Title: Partial Dependence Plots
Description: A general framework for constructing partial dependence (i.e.,
marginal effect) plots from various types machine learning models in R.
Author: Brandon Greenwell [aut, cre]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between pdp versions 0.2.0 dated 2016-12-03 and 0.3.0 dated 2016-12-18
DESCRIPTION | 13 ++-- MD5 | 23 ++++---- NAMESPACE | 3 + NEWS.md | 9 ++- R/partial.R | 101 ++++++++++++++++++++++++++++--------- R/pdClassification.R | 83 ++++++++++++++++-------------- R/pdRegression.R | 34 +++++++----- R/pdp.R |only R/plotPartial.R | 29 +++++----- R/utils.R | 15 +++++ README.md | 137 ++++++++++++++------------------------------------- man/grid.arrange.Rd |only man/partial.Rd | 49 +++++++++++++++--- man/pdp.Rd |only 14 files changed, 281 insertions(+), 215 deletions(-)
Title: Programming with Big Data -- Interface to MPI
Description: An efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data
('SPMD')
parallel programming style, which is intended for batch parallel
execution.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb] (FreeBSD),
Brian Ripley [ctb] (Windows HPC Pack 2012),
R Core team [ctb] (some functions are modified from the base packages)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdMPI versions 0.3-2 dated 2016-07-15 and 0.3-3 dated 2016-12-18
ChangeLog | 19 +++++- DESCRIPTION | 15 ++--- INSTALL | 10 +-- MD5 | 30 +++++----- NAMESPACE | 4 - README.md | 3 - inst/CITATION | 8 +- inst/doc/pbdMPI-guide.Rnw | 12 +--- inst/doc/pbdMPI-guide.pdf |binary man/vv_seed.Rd | 2 src/Makevars.win | 78 ++++++++++++++++++++++++-- vignettes/pbdMPI-guide.Rnw | 12 +--- vignettes/pbdMPI-include/01-introduction.tex | 2 vignettes/pbdMPI-include/03-faq.tex | 34 ++++++++++- vignettes/pbdMPI-include/04-windows_msmpi.tex | 4 - vignettes/pbdMPI-include/pbdMPI.bib | 16 ++--- 16 files changed, 177 insertions(+), 72 deletions(-)
Title: Robust Linear Mixed Effects Models
Description: A method to fit linear mixed effects models robustly.
Robustness is achieved by modification of the scoring equations
combined with the Design Adaptive Scale approach.
Author: Manuel Koller
Maintainer: Manuel Koller <koller.manuel@gmail.com>
Diff between robustlmm versions 2.1 dated 2016-12-01 and 2.1-2 dated 2016-12-18
robustlmm-2.1-2/robustlmm/DESCRIPTION | 8 robustlmm-2.1-2/robustlmm/MD5 | 29 robustlmm-2.1-2/robustlmm/R/helpers.R | 5 robustlmm-2.1-2/robustlmm/R/psiFunc2.R | 10 robustlmm-2.1-2/robustlmm/inst/doc/rlmer.Rnw | 8 robustlmm-2.1-2/robustlmm/inst/doc/rlmer.pdf |binary robustlmm-2.1-2/robustlmm/inst/include/robustlmm.h | 41 + robustlmm-2.1-2/robustlmm/src/Integration.cpp |only robustlmm-2.1-2/robustlmm/src/Integration.h |only robustlmm-2.1-2/robustlmm/src/PsiFunction.cpp | 619 +++++++++------------ robustlmm-2.1-2/robustlmm/src/PsiFunction.h |only robustlmm-2.1-2/robustlmm/src/globals.h | 1 robustlmm-2.1-2/robustlmm/tests/PsiFunction.R | 12 robustlmm-2.1-2/robustlmm/vignettes/rlmer.Rnw | 8 robustlmm-2.1-2/robustlmm/vignettes/rlmer.bib | 11 robustlmm-2.1-2/robustlmm/vignettes/rlmer.sty | 7 robustlmm-2.1/robustlmm/vignettes/jss.dtx |only robustlmm-2.1/robustlmm/vignettes/jsslogo.pdf |only 18 files changed, 388 insertions(+), 371 deletions(-)
Title: 'Lex' and 'Yacc'
Description: R implementation of the common parsing tools 'lex' and 'yacc'.
Author: Marek Jagielski [aut, cre, cph], David M. Beazley [aut, cph]
Maintainer: Marek Jagielski <marek.jagielski@gmail.com>
Diff between rly versions 1.1.0 dated 2016-12-04 and 1.2.1 dated 2016-12-18
rly-1.1.0/rly/tests/testthat/test.calclex2.R |only rly-1.1.0/rly/tests/testthat/test.pkg_test2.R |only rly-1.1.0/rly/tests/testthat/test.pkg_test3.R |only rly-1.1.0/rly/tests/testthat/test.pkg_test4.R |only rly-1.1.0/rly/tests/testthat/test.pkg_test5.R |only rly-1.1.0/rly/tests/testthat/test.pkg_test6.R |only rly-1.1.0/rly/tests/testthat/test.yacc_unicode_literals.R |only rly-1.2.1/rly/DESCRIPTION | 12 +- rly-1.2.1/rly/MD5 | 20 +-- rly-1.2.1/rly/NEWS.md | 18 +++ rly-1.2.1/rly/R/lex.R | 12 +- rly-1.2.1/rly/R/yacc.R | 68 +++++++++---- rly-1.2.1/rly/tests/testthat/parser.out |only rly-1.2.1/rly/tests/testthat/test.yacc_error6.R | 66 ++++++------- rly-1.2.1/rly/tests/testthat/test.yacc_nested.R | 71 ++++++++++++++ 15 files changed, 193 insertions(+), 74 deletions(-)
Title: Adjusted Means and Proportions by Direct Standardisation
Description: Calculate adjusted means and proportions of a variable by groups defined by another variable by direct standardisation, standardised to the structure of the dataset.
Author: Christiana Kartsonaki
Maintainer: Christiana Kartsonaki <christiana.kartsonaki@gmail.com>
Diff between DirectStandardisation versions 1.1 dated 2016-12-10 and 1.2 dated 2016-12-18
DESCRIPTION | 8 +-- MD5 | 14 ++--- R/adjmeans.R | 15 +++++ R/adjprop.R | 89 +++++++++++++++++++++++------------ build/partial.rdb |binary man/DirectStandardisation-package.Rd | 1 man/adjmeans.Rd | 30 +++++++++-- man/adjprop.Rd | 74 +++++++++++++++++++++++++---- 8 files changed, 173 insertions(+), 58 deletions(-)
More information about DirectStandardisation at CRAN
Permanent link
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical
measures, which otherwise could only be calculated with additional
effort (like standard errors or root mean squared errors). Second,
these shortcut functions are generic (if appropriate), and can be
applied not only to vectors, but also to other objects as well
(e.g., the Coefficient of Variation can be computed for vectors,
linear models, or linear mixed models; the r2()-function returns
the r-squared value for 'lm', 'glm', 'merMod' or 'lme' objects).
The focus of most functions lies on summary statistics or fit
measures for regression models, including generalized linear
models and mixed effects models. However, some of the functions
also deal with other statistical measures, like Cronbach's Alpha,
Cramer's V, Phi etc.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.7.0 dated 2016-12-08 and 0.7.1 dated 2016-12-18
DESCRIPTION | 10 - MD5 | 22 ++-- NEWS | 148 ++++++++++++++------------ NEWS.md | 84 ++++++++------- R/icc.R | 6 - R/merMod_p.R | 218 +++++++++++++++++++-------------------- R/prop.R | 269 ++++++++++++++++++++++++------------------------- R/se.R | 4 R/std_b.R | 7 - build/partial.rdb |binary man/prop.Rd | 4 man/sjstats-package.Rd | 74 ++++++------- 12 files changed, 434 insertions(+), 412 deletions(-)
Title: Expand Short URLs
Description: Tools expand vectors of short URLs into long URLs. No API services are used,
which may mean that this operates more slowly than API services do (since they usually
cache results of expansions every user of the service performs).
Author: Bob Rudis [aut, cre]
Maintainer: Bob Rudis <bob@rud.is>
Diff between longurl versions 0.2.0 dated 2016-08-31 and 0.3.0 dated 2016-12-18
DESCRIPTION | 16 +++++------ MD5 | 14 +++++----- NAMESPACE | 7 +++-- NEWS.md | 5 +++ R/longurl-package.r | 9 ++---- R/longurl.r | 72 +++++++++++++++++----------------------------------- man/expand_urls.Rd | 28 +++++++++----------- man/longurl.Rd | 5 +-- 8 files changed, 67 insertions(+), 89 deletions(-)
Title: Forecasting Using Smoothing Functions
Description: The set of smoothing functions used for time series analysis and in forecasting.
Currently the package includes exponential smoothing models and SARIMA in state-space
form + several simulation functions.
Author: Ivan Svetunkov [aut, cre] (Research Associate at Lancaster Centre for
Forecasting, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 1.5.1 dated 2016-12-01 and 1.5.2 dated 2016-12-18
DESCRIPTION | 8 +- MD5 | 78 ++++++++++++------------ NAMESPACE | 10 ++- NEWS | 17 +++++ R/autoces.R | 2 R/autossarima.R | 2 R/ces.R | 23 +++---- R/es.R | 50 ++++++++++----- R/ges.R | 19 ++--- R/iss.R | 65 +++++++++++++------- R/methods.R | 146 ++++++++++------------------------------------ R/simces.R | 14 ++-- R/simes.R | 14 ++-- R/simssarima.R | 22 +++--- R/sma.R | 9 +- R/ssarima.R | 13 ++-- R/ssfunctions.R | 18 ++++- build/vignette.rds |binary inst/doc/ces.html | 46 +++++++------- inst/doc/es.html | 74 +++++++++++------------ inst/doc/ges.html | 12 +-- inst/doc/simulate.Rmd | 6 - inst/doc/simulate.html | 98 ++++++++++++++---------------- inst/doc/sma.html | 8 +- inst/doc/smooth.html | 4 - inst/doc/ssarima.html | 45 +++++++------- man/autoces.Rd | 7 +- man/autossarima.Rd | 8 +- man/ces.Rd | 8 +- man/es.Rd | 10 +-- man/ges.Rd | 11 ++- man/iss.Rd | 8 +- man/simces.Rd | 2 man/simes.Rd | 2 man/simssarima.Rd | 2 man/sma.Rd | 1 man/ssarima.Rd | 8 +- tests/testthat/test_ces.R | 4 - tests/testthat/test_es.R | 8 +- vignettes/simulate.Rmd | 6 - 40 files changed, 445 insertions(+), 443 deletions(-)
Title: Regularized Generalized Linear Models with Interaction Effects
Description: Provides an efficient procedure for fitting the entire solution
path for high-dimensional regularized quadratic generalized linear models with
interactions effects under the strong or weak heredity constraint.
Author: Yang Feng, Ning Hao and Hao Helen Zhang
Maintainer: Yang Feng <yang.feng@columbia.edu>
Diff between RAMP versions 1.4 dated 2016-06-07 and 1.9 dated 2016-12-18
RAMP-1.4/RAMP/R/cd.lasso.R |only RAMP-1.4/RAMP/R/ols.refit.R |only RAMP-1.4/RAMP/src/cd_lasso_bin.f |only RAMP-1.4/RAMP/src/cd_lasso_lin.f |only RAMP-1.9/RAMP/ChangeLog |only RAMP-1.9/RAMP/DESCRIPTION | 13 - RAMP-1.9/RAMP/MD5 | 39 ++-- RAMP-1.9/RAMP/NAMESPACE | 2 RAMP-1.9/RAMP/R/RAMP.R | 333 ++++++++++++++++++------------------- RAMP-1.9/RAMP/R/cd.general.R | 27 +-- RAMP-1.9/RAMP/R/intertomain.R | 4 RAMP-1.9/RAMP/R/loglik.R | 10 - RAMP-1.9/RAMP/R/maintointer.R | 2 RAMP-1.9/RAMP/R/oraclefit.R | 2 RAMP-1.9/RAMP/R/outercprod.R | 2 RAMP-1.9/RAMP/R/predict.RAMP.R | 19 +- RAMP-1.9/RAMP/R/preprocess.R | 2 RAMP-1.9/RAMP/R/print.RAMP.R | 4 RAMP-1.9/RAMP/man/RAMP.Rd | 47 +++-- RAMP-1.9/RAMP/man/predict.RAMP.Rd | 20 +- RAMP-1.9/RAMP/man/print.RAMP.Rd | 4 RAMP-1.9/RAMP/src/cd_general_bin.f | 16 - RAMP-1.9/RAMP/src/cd_general_lin.f | 16 - 23 files changed, 280 insertions(+), 282 deletions(-)
Title: Partial Least Squares and Principal Component Regression
Description: Multivariate regression methods
Partial Least Squares Regression (PLSR), Principal Component
Regression (PCR) and Canonical Powered Partial Least Squares (CPPLS).
Author: Bjørn-Helge Mevik, Ron Wehrens and Kristian Hovde Liland
Maintainer: Bjørn-Helge Mevik <pls@mevik.net>
Diff between pls versions 2.5-0 dated 2015-08-22 and 2.6-0 dated 2016-12-18
DESCRIPTION | 8 +-- MD5 | 44 +++++++++++---------- NAMESPACE | 11 ++--- R/kernelpls.fit.R | 4 - R/ncomp.R |only R/plots.R | 27 +++++++++---- build/vignette.rds |binary inst/NEWS.Rd | 17 +++++++- inst/doc/pls-manual.R | 95 ++++++++++++++++++++++++++++------------------- inst/doc/pls-manual.Rnw | 60 +++++++++++++++++++++++++---- inst/doc/pls-manual.pdf |binary man/coef.mvr.Rd | 4 - man/coefplot.Rd | 6 +- man/cppls.fit.Rd | 4 - man/kernelpls.fit.Rd | 4 - man/oscorespls.fit.Rd | 4 - man/predplot.Rd | 4 + man/selectNcomp.Rd |only man/simpls.fit.Rd | 4 - man/svdpc.fit.Rd | 4 - man/validationplot.Rd | 6 +- man/widekernelpls.fit.Rd | 4 - vignettes/pls-manual.Rnw | 60 +++++++++++++++++++++++++---- vignettes/pls-manual.bib | 22 ++++++++++ 24 files changed, 278 insertions(+), 114 deletions(-)
Title: R Functions for Elementary Statistics
Description: A collection of data sets and functions that are useful in the
teaching of statistics at an elementary level to students who may have
little or no previous experience with the command line. The functions for
elementary inferential procedures follow a uniform interface for user
input. Some of the functions are instructional applets that can only be
run on the R Studio integrated development environment with package
'manipulate' installed. Other instructional applets are Shiny apps
that may be run locally. In teaching the package is used alongside of
package 'mosaic', 'mosaicData' and 'abd', which are therefore listed as
dependencies.
Author: Rebekah Robinson <rebekahrobinson14@gmail.com> and Homer
White <hwhite0@georgetowncollege.edu>
Maintainer: Homer White <hwhite0@georgetowncollege.edu>
Diff between tigerstats versions 0.2.7 dated 2015-09-23 and 0.3 dated 2016-12-18
tigerstats-0.2.7/tigerstats/build |only tigerstats-0.2.7/tigerstats/inst/doc |only tigerstats-0.2.7/tigerstats/vignettes |only tigerstats-0.3/tigerstats/DESCRIPTION | 14 tigerstats-0.3/tigerstats/MD5 | 320 +++++++------------- tigerstats-0.3/tigerstats/NAMESPACE | 2 tigerstats-0.3/tigerstats/R/barchartGC.R | 1 tigerstats-0.3/tigerstats/R/data.R | 4 tigerstats-0.3/tigerstats/R/helpGC.R | 96 +++--- tigerstats-0.3/tigerstats/R/tigerstats-package.R | 4 tigerstats-0.3/tigerstats/R/zzz.R |only tigerstats-0.3/tigerstats/inst/NEWS.Rd | 11 tigerstats-0.3/tigerstats/man/BinomNorm.Rd | 2 tigerstats-0.3/tigerstats/man/BinomSkew.Rd | 2 tigerstats-0.3/tigerstats/man/CIMean.Rd | 4 tigerstats-0.3/tigerstats/man/CIProp.Rd | 2 tigerstats-0.3/tigerstats/man/ChisqSimSlow.Rd | 2 tigerstats-0.3/tigerstats/man/DtrellHist.Rd | 4 tigerstats-0.3/tigerstats/man/DtrellScat.Rd | 2 tigerstats-0.3/tigerstats/man/EmpRule.Rd | 6 tigerstats-0.3/tigerstats/man/EmpRuleGC.Rd | 2 tigerstats-0.3/tigerstats/man/FakeSchool.Rd | 2 tigerstats-0.3/tigerstats/man/FindRegLine.Rd | 2 tigerstats-0.3/tigerstats/man/MeanSampler.Rd | 2 tigerstats-0.3/tigerstats/man/Ovarian.Rd | 6 tigerstats-0.3/tigerstats/man/ParseFormula.Rd | 6 tigerstats-0.3/tigerstats/man/Points2Watch.Rd | 2 tigerstats-0.3/tigerstats/man/PropSampler.Rd | 2 tigerstats-0.3/tigerstats/man/RandomExp.Rd | 4 tigerstats-0.3/tigerstats/man/RectShade.Rd | 2 tigerstats-0.3/tigerstats/man/RegEstimate.Rd | 2 tigerstats-0.3/tigerstats/man/SampDist2Means.Rd | 2 tigerstats-0.3/tigerstats/man/SampDist2Props.Rd | 2 tigerstats-0.3/tigerstats/man/SampDistMean.Rd | 2 tigerstats-0.3/tigerstats/man/ShallowReg.Rd | 2 tigerstats-0.3/tigerstats/man/SimpleRandom.Rd | 14 tigerstats-0.3/tigerstats/man/SimpleRandom2.Rd | 4 tigerstats-0.3/tigerstats/man/Skewer.Rd | 2 tigerstats-0.3/tigerstats/man/SlowGoodness.Rd | 2 tigerstats-0.3/tigerstats/man/SmallExp.Rd | 2 tigerstats-0.3/tigerstats/man/Type12Errors.Rd | 2 tigerstats-0.3/tigerstats/man/UnderShade.Rd | 2 tigerstats-0.3/tigerstats/man/Variability.Rd | 4 tigerstats-0.3/tigerstats/man/VaryCorrelation.Rd | 2 tigerstats-0.3/tigerstats/man/alcohol.Rd | 4 tigerstats-0.3/tigerstats/man/attitudes.Rd | 4 tigerstats-0.3/tigerstats/man/barchartGC.Rd | 10 tigerstats-0.3/tigerstats/man/beans.Rd | 2 tigerstats-0.3/tigerstats/man/binomtestGC.Rd | 6 tigerstats-0.3/tigerstats/man/cabrera.Rd | 2 tigerstats-0.3/tigerstats/man/chisqtestGC.Rd | 4 tigerstats-0.3/tigerstats/man/chugtime.Rd | 2 tigerstats-0.3/tigerstats/man/colPerc.Rd | 2 tigerstats-0.3/tigerstats/man/deathpen.Rd | 10 tigerstats-0.3/tigerstats/man/expCounts.Rd | 4 tigerstats-0.3/tigerstats/man/fuel.Rd | 2 tigerstats-0.3/tigerstats/man/galton.Rd | 2 tigerstats-0.3/tigerstats/man/gcfeeling.Rd | 2 tigerstats-0.3/tigerstats/man/gcstudents.Rd | 2 tigerstats-0.3/tigerstats/man/gss02.Rd | 4 tigerstats-0.3/tigerstats/man/gss08.Rd | 4 tigerstats-0.3/tigerstats/man/gss2012.Rd | 2 tigerstats-0.3/tigerstats/man/hair_and_act.Rd | 2 tigerstats-0.3/tigerstats/man/handheight.Rd | 2 tigerstats-0.3/tigerstats/man/hanford1.Rd | 4 tigerstats-0.3/tigerstats/man/hanford2.Rd | 4 tigerstats-0.3/tigerstats/man/helpGC.Rd | 14 tigerstats-0.3/tigerstats/man/henderson.Rd | 2 tigerstats-0.3/tigerstats/man/hofbatting.Rd | 2 tigerstats-0.3/tigerstats/man/hofpitching.Rd | 2 tigerstats-0.3/tigerstats/man/imagpop.Rd | 4 tigerstats-0.3/tigerstats/man/iqsiblings.Rd | 2 tigerstats-0.3/tigerstats/man/knifeorgunblock.Rd | 2 tigerstats-0.3/tigerstats/man/labels.Rd | 2 tigerstats-0.3/tigerstats/man/ledgejump.Rd | 8 tigerstats-0.3/tigerstats/man/lmGC.Rd | 2 tigerstats-0.3/tigerstats/man/m111survey.Rd | 2 tigerstats-0.3/tigerstats/man/m111surveyfa12.Rd | 2 tigerstats-0.3/tigerstats/man/m111surveyfa13.Rd | 2 tigerstats-0.3/tigerstats/man/music.Rd | 2 tigerstats-0.3/tigerstats/man/napkins.Rd | 2 tigerstats-0.3/tigerstats/man/nonresponse.Rd | 8 tigerstats-0.3/tigerstats/man/nosmokeday.Rd | 8 tigerstats-0.3/tigerstats/man/oldfaithful.Rd | 2 tigerstats-0.3/tigerstats/man/pbinomGC.Rd | 4 tigerstats-0.3/tigerstats/man/pchisqGC.Rd | 2 tigerstats-0.3/tigerstats/man/pennstate1.Rd | 2 tigerstats-0.3/tigerstats/man/plot.GClm.Rd | 2 tigerstats-0.3/tigerstats/man/plot.polyGC.Rd | 2 tigerstats-0.3/tigerstats/man/pnormGC.Rd | 2 tigerstats-0.3/tigerstats/man/polyfitGC.Rd | 2 tigerstats-0.3/tigerstats/man/popsamp.Rd | 2 tigerstats-0.3/tigerstats/man/predict.GClm.Rd | 2 tigerstats-0.3/tigerstats/man/predict.polyGC.Rd | 2 tigerstats-0.3/tigerstats/man/print.GCbinomtest.Rd | 2 tigerstats-0.3/tigerstats/man/print.GCchisqtest.Rd | 2 tigerstats-0.3/tigerstats/man/print.GClm.Rd | 2 tigerstats-0.3/tigerstats/man/print.GCttest.Rd | 2 tigerstats-0.3/tigerstats/man/print.gcp1test.Rd | 2 tigerstats-0.3/tigerstats/man/print.gcp2test.Rd | 2 tigerstats-0.3/tigerstats/man/print.polyGC.Rd | 2 tigerstats-0.3/tigerstats/man/proptestGC.Rd | 4 tigerstats-0.3/tigerstats/man/ptGC.Rd | 2 tigerstats-0.3/tigerstats/man/pushups.Rd | 2 tigerstats-0.3/tigerstats/man/qnormGC.Rd | 4 tigerstats-0.3/tigerstats/man/rowPerc.Rd | 2 tigerstats-0.3/tigerstats/man/saltmarsh.Rd | 6 tigerstats-0.3/tigerstats/man/sat.Rd | 4 tigerstats-0.3/tigerstats/man/sealsO2.Rd | 6 tigerstats-0.3/tigerstats/man/simpleFind.Rd | 6 tigerstats-0.3/tigerstats/man/simpleKeyRev.Rd | 6 tigerstats-0.3/tigerstats/man/stumps.Rd | 2 tigerstats-0.3/tigerstats/man/tExplore.Rd | 2 tigerstats-0.3/tigerstats/man/tSampler.Rd | 2 tigerstats-0.3/tigerstats/man/temperature.Rd | 2 tigerstats-0.3/tigerstats/man/theme.rpres.Rd | 3 tigerstats-0.3/tigerstats/man/themerpres.Rd | 3 tigerstats-0.3/tigerstats/man/tigerstats-package.Rd | 4 tigerstats-0.3/tigerstats/man/tips.Rd | 4 tigerstats-0.3/tigerstats/man/tornado.Rd | 4 tigerstats-0.3/tigerstats/man/ttestGC.Rd | 6 tigerstats-0.3/tigerstats/man/ucdavis1.Rd | 2 tigerstats-0.3/tigerstats/man/verlander.Rd | 12 tigerstats-0.3/tigerstats/man/youthrisk03.Rd | 2 124 files changed, 392 insertions(+), 432 deletions(-)
Title: Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), Mahalanobis distance are some of the many fast functions.
Author: Manos Papadakis, Michail Tsagris, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis and John Burkardt
Maintainer: Manos Papadakis <papadakm95@gmail.com>
Diff between Rfast versions 1.7.2 dated 2016-12-14 and 1.7.3 dated 2016-12-18
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/score.multinomregs.R | 2 +- man/Rfast-package.Rd | 4 ++-- src/Lgamma.cpp | 2 -- src/mn.cpp | 9 +++------ src/mn.h | 32 +++++++++++++++++--------------- src/sort_uniq_int.cpp | 35 ++++++++++++++--------------------- 8 files changed, 48 insertions(+), 58 deletions(-)
Title: Extreme Gradient Boosting
Description: Extreme Gradient Boosting, which is an efficient implementation
of gradient boosting framework. This package is its R interface. The package
includes efficient linear model solver and tree learning algorithms. The package
can automatically do parallel computation on a single machine which could be
more than 10 times faster than existing gradient boosting packages. It supports
various objective functions, including regression, classification and ranking.
The package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen <tianqi.tchen@gmail.com>, Tong He <hetong007@gmail.com>,
Michael Benesty <michael@benesty.fr>, Vadim Khotilovich <khotilovich@gmail.com>,
Yuan Tang <terrytangyuan@gmail.com>
Maintainer: Tong He <hetong007@gmail.com>
Diff between xgboost versions 0.6-0 dated 2016-12-16 and 0.6-2 dated 2016-12-18
xgboost-0.6-0/xgboost/src/Makevars |only xgboost-0.6-2/xgboost/DESCRIPTION | 6 xgboost-0.6-2/xgboost/MD5 | 15 xgboost-0.6-2/xgboost/build/vignette.rds |binary xgboost-0.6-2/xgboost/cleanup |only xgboost-0.6-2/xgboost/configure |only xgboost-0.6-2/xgboost/configure.ac |only xgboost-0.6-2/xgboost/inst/doc/discoverYourData.html | 681 ++++++++---- xgboost-0.6-2/xgboost/inst/doc/xgboost.pdf |binary xgboost-0.6-2/xgboost/inst/doc/xgboostPresentation.html | 848 ++++++++++------ xgboost-0.6-2/xgboost/src/Makevars.in |only 11 files changed, 1014 insertions(+), 536 deletions(-)
Title: C++ Header Files for Stan
Description: The C++ header files of the Stan project are provided by this package, but it contains no R code, vignettes, or function documentation. There is a shared object containing part of the 'CVODES' library, but it is not accessible from R. 'StanHeaders' is only useful for developers who want to utilize the 'LinkingTo' directive of their package's DESCRIPTION file to build on the Stan library without incurring unnecessary dependencies. The Stan project develops a probabilistic programming language that implements full or approximate Bayesian statistical inference via Markov Chain Monte Carlo or 'variational' methods and implements (optionally penalized) maximum likelihood estimation via optimization. The Stan library includes an advanced automatic differentiation scheme, 'templated' statistical and linear algebra functions that can handle the automatically 'differentiable' scalar types (and doubles, 'ints', etc.), and a parser for the Stan language. The 'rstan' package provides user-facing R functions to parse, compile, test, estimate, and analyze Stan models.
Author: Ben Goodrich [cre, aut],
Joshua Pritikin [ctb],
Andrew Gelman [aut],
Bob Carpenter [aut],
Matt Hoffman [aut],
Daniel Lee [aut],
Michael Betancourt [aut],
Marcus Brubaker [aut],
Jiqiang Guo [aut],
Peter Li [aut],
Allen Riddell [aut],
Marco Inacio [aut],
Mitzi Morris [aut],
Jeffrey Arnold [aut],
Rob Goedman [aut],
Brian Lau [aut],
Rob Trangucci [aut],
Jonah Gabry [aut],
Alp Kucukelbir [aut],
Robert Grant [aut],
Dustin Tran [aut],
Michael Malecki [aut],
Yuanjun Gao [aut],
Trustees of Columbia University [cph],
Lawrence Livermore National Security [cph] (CVODES),
The Regents of the University of California [cph] (CVODES),
Southern Methodist University [cph] (CVODES)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between StanHeaders versions 2.12.0-1 dated 2016-11-20 and 2.13.1 dated 2016-12-18
StanHeaders-2.12.0-1/StanHeaders/inst/include/src/stan/model/util.hpp |only StanHeaders-2.12.0-1/StanHeaders/inst/include/stan/math/prim/mat/fun/abs.hpp |only StanHeaders-2.12.0-1/StanHeaders/src/cvodes/src/nvec_openmp |only StanHeaders-2.12.0-1/StanHeaders/src/cvodes/src/nvec_par |only StanHeaders-2.12.0-1/StanHeaders/src/cvodes/src/nvec_pthreads |only StanHeaders-2.13.1/StanHeaders/DESCRIPTION | 10 StanHeaders-2.13.1/StanHeaders/MD5 | 793 +++++---- StanHeaders-2.13.1/StanHeaders/inst/CITATION | 21 StanHeaders-2.13.1/StanHeaders/inst/include/cvodes/cvodes_klu.h | 8 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_openmp.h | 16 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_parallel.h | 43 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_parhyp.h |only StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_petsc.h |only StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_pthreads.h | 16 StanHeaders-2.13.1/StanHeaders/inst/include/nvector/nvector_serial.h | 16 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/command/stanc_helper.hpp | 52 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/ast.hpp | 94 + StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/ast_def.cpp | 304 +++ StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/compiler.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/function_signatures.h | 105 - StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/generator.hpp | 777 +++++---- StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/expression_grammar_def.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/functions_grammar_def.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/indexes_grammar_def.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/program_grammar_def.hpp | 5 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions.hpp | 41 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/semantic_actions_def.cpp | 231 +- StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/statement_grammar_def.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/term_grammar_def.hpp | 41 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar.hpp | 21 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/grammars/var_decls_grammar_def.hpp | 127 - StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/lang/parser.hpp | 5 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/mcmc/hmc/hamiltonians/base_hamiltonian.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/finite_diff_grad.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/grad_hess_log_prob.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/grad_tr_mat_times_hessian.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/gradient.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/gradient_dot_vector.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/hessian.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/hessian_times_vector.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/log_prob_grad.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/log_prob_propto.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/model_functional.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/model/test_gradients.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/optimization/bfgs.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/optimization/newton.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/services/init/initialize_state.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/variational/advi.hpp | 1 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/variational/families/normal_fullrank.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/variational/families/normal_meanfield.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/src/stan/version.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/core/fvar.hpp | 79 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/core/operator_addition.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/core/operator_division.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/core/operator_subtraction.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/mat/fun/Eigen_NumTraits.hpp | 46 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/mat/fun/determinant.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/mat/fun/divide.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/mat/fun/multiply.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/Phi_approx.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/acosh.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/asinh.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atan2.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/atanh.hpp | 13 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/binary_log_loss.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/binomial_coefficient_log.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/cbrt.hpp | 15 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/digamma.hpp | 13 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/erf.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/erfc.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/expm1.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/falling_factorial.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fdim.hpp | 56 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fma.hpp | 9 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmax.hpp | 34 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmin.hpp | 9 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/fmod.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_p.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/gamma_q.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/hypot.hpp | 55 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/inv_logit.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lbeta.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/lgamma.hpp | 22 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m.hpp | 9 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_exp.hpp | 18 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1m_inv_logit.hpp | 16 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log1p.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log2.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_diff_exp.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_falling_factorial.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_mix.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_rising_factorial.hpp | 27 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/log_sum_exp.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/multiply_log.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/owens_t.hpp | 29 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/pow.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/rising_factorial.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/round.hpp | 20 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/tgamma.hpp | 15 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/trigamma.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/fun/trunc.hpp | 11 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/fwd/scal/meta/ad_promotable.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/memory/stack_alloc.hpp | 19 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/mix/mat.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/mix/mat/functor/finite_diff_grad_hessian.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/mix/scal.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/err/check_matching_sizes.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/err/check_nonzero_size.hpp | 9 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/err/check_ordered.hpp | 10 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/fun/fill.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/fun/scaled_add.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/functor/coupled_ode_observer.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat.hpp | 67 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor.hpp | 21 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cholesky_factor_corr.hpp | 22 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_column_index.hpp | 16 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_corr_matrix.hpp | 10 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_cov_matrix.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_ldlt_factor.hpp | 9 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_lower_triangular.hpp | 15 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_matching_dims.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_multiplicable.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_ordered.hpp | 10 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_definite.hpp | 19 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_pos_semidefinite.hpp | 15 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_positive_ordered.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_range.hpp | 38 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_row_index.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_simplex.hpp | 8 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_spsd_matrix.hpp | 15 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_square.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_std_vector_index.hpp | 8 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_symmetric.hpp | 17 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_unit_vector.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/err/check_vector.hpp | 13 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/LDLT_factor.hpp | 35 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/MatrixExponential.h |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/Phi_approx.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/acosh.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/asinh.hpp | 17 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/atanh.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/cov_exp_quad.hpp | 26 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/erf.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/exp2.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/fabs.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/lgamma.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/log1m_inv_logit.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/log1p.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/log2.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/log_inv_logit.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/logit.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/make_nu.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/matrix_exp_pade.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_L.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/read_corr_matrix.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/round.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/trigamma.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/fun/trunc.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_gradient.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/functor/finite_diff_hessian.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/categorical_log.hpp | 19 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/gaussian_dlm_obs_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/inv_wishart_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_cholesky_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/lkj_corr_log.hpp | 8 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_cholesky_log.hpp | 1 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_normal_prec_log.hpp | 1 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/multi_student_t_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/multinomial_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/ordered_logistic_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/mat/prob/wishart_log.hpp | 10 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal.hpp | 19 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_bounded.hpp | 18 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_size.hpp | 11 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_consistent_sizes.hpp | 45 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_equal.hpp | 20 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_finite.hpp | 13 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater.hpp | 20 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_greater_or_equal.hpp | 20 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less.hpp | 13 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_less_or_equal.hpp | 17 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_nonnegative.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_not_nan.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive_finite.hpp | 8 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_positive_size.hpp | 8 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/check_size_match.hpp | 16 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/domain_error_vec.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/invalid_argument_vec.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/err/out_of_range.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/Phi_approx.hpp | 19 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/acosh.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/asinh.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/atanh.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_first_kind.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/bessel_second_kind.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/binary_log_loss.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/boost_policy.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/cbrt.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/choose.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/digamma.hpp | 15 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/divide.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/erf.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/erfc.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/exp2.hpp | 23 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/expm1.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/fdim.hpp | 25 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/fma.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/fmax.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/fmin.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/grad_reg_inc_beta.hpp | 28 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/hypot.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/ibeta.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_cloglog.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_logit.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_sqrt.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/inv_square.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/is_inf.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/ldexp.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/lgamma.hpp | 22 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/lmgamma.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m.hpp | 10 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_exp.hpp | 20 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1m_inv_logit.hpp | 26 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p.hpp | 50 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log1p_exp.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log2.hpp | 30 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_falling_factorial.hpp | 20 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_inv_logit.hpp | 23 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/log_rising_factorial.hpp | 20 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/logit.hpp | 23 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_first_kind.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/modified_bessel_second_kind.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/modulus.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/owens_t.hpp | 10 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/round.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/square.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/tgamma.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/trigamma.hpp | 91 - StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/trunc.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/fun/value_of_rec.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/meta/ad_promotable.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_logit_rng.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/bernoulli_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_ccdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_cdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/beta_rng.hpp | 39 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/binomial_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_ccdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_cdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/cauchy_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/chi_square_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/double_exponential_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/exp_mod_normal_rng.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/exponential_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/frechet_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/gamma_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/gumbel_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_chi_square_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf.hpp | 8 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_cdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/inv_gamma_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_ccdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/logistic_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/lognormal_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_ccdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_cdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_log_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_2_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/neg_binomial_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/normal_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/pareto_type_2_rng.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_ccdf_log.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_cdf_log.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log.hpp | 3 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_log_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/poisson_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/rayleigh_rng.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_ccdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_cdf_log.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/scaled_inv_chi_square_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_log.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/skew_normal_rng.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/student_t_rng.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/uniform_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/von_mises_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/prim/scal/prob/weibull_rng.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_addition.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_divide_equal.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_division.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_equal.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_greater_than.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_greater_than_or_equal.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_less_than.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_less_than_or_equal.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_minus_equal.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_multiplication.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_multiply_equal.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_not_equal.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_plus_equal.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/operator_subtraction.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/precomputed_gradients.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/var.hpp | 11 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/core/vari.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp | 237 ++ StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/LDLT_factor.hpp | 27 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/cholesky_decompose.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/cov_exp_quad.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/trace_inv_quad_form_ldlt.hpp | 8 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/fun/unit_vector_constrain.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/functor/cvodes_ode_data.hpp | 8 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/functor/integrate_ode_bdf.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/mat/functor/ode_system.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal.hpp | 5 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/acosh.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/asinh.hpp | 15 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/atan2.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/atanh.hpp | 27 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/binary_log_loss.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/cbrt.hpp | 10 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/digamma.hpp | 1 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/erf.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/erfc.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/exp2.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/expm1.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/falling_factorial.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/fdim.hpp | 81 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/fma.hpp | 71 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/fmod.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_p.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/gamma_q.hpp | 11 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/hypot.hpp | 28 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/ibeta.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/if_else.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/lgamma.hpp | 10 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_exp.hpp | 30 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1m_inv_logit.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log1p.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_diff_exp.hpp | 49 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_falling_factorial.hpp | 16 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/log_inv_logit.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/logit.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/multiply_log.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/owens_t.hpp | 19 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/pow.hpp | 4 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/rising_factorial.hpp | 14 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/round.hpp | 6 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/tgamma.hpp | 12 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/trigamma.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/fun/trunc.hpp | 9 StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/rev/scal/meta/ad_promotable.hpp |only StanHeaders-2.13.1/StanHeaders/inst/include/stan/math/version.hpp | 2 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_band.h | 20 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_config.h | 7 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_config.in | 5 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_dense.h | 20 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_direct.h | 14 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_klu_impl.h | 5 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_nvector.h | 29 StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_sparse.h | 93 - StanHeaders-2.13.1/StanHeaders/inst/include/sundials/sundials_superlumt_impl.h | 9 StanHeaders-2.13.1/StanHeaders/src/cvodes/LICENSE | 8 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/cvodes/cvodes_klu.h | 8 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_openmp.h | 16 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_parallel.h | 43 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_parhyp.h |only StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_petsc.h |only StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_pthreads.h | 16 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/nvector/nvector_serial.h | 16 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_band.h | 20 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_config.h | 7 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_config.in | 5 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_dense.h | 20 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_direct.h | 14 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_klu_impl.h | 5 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_nvector.h | 29 StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_sparse.h | 93 - StanHeaders-2.13.1/StanHeaders/src/cvodes/include/sundials/sundials_superlumt_impl.h | 9 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/CMakeLists.txt | 4 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/README | 459 ----- StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodea.c | 22 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes.c | 7 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_band.c | 22 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_bandpre.c | 21 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_bbdpre.c | 26 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_dense.c | 28 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_diag.c | 10 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_direct.c | 16 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_direct_impl.h | 19 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_impl.h | 15 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_klu.c | 146 + StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_lapack.c | 38 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_sparse_impl.h | 6 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_spbcgs.c | 21 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_spgmr.c | 21 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_spils.c | 19 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_spils_impl.h | 15 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_sptfqmr.c | 27 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/cvodes/cvodes_superlumt.c | 37 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/nvec_ser/README | 90 - StanHeaders-2.13.1/StanHeaders/src/cvodes/src/nvec_ser/nvector_serial.c | 27 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/sundials/README | 188 -- StanHeaders-2.13.1/StanHeaders/src/cvodes/src/sundials/sundials_direct.c | 3 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/sundials/sundials_nvector.c | 11 StanHeaders-2.13.1/StanHeaders/src/cvodes/src/sundials/sundials_sparse.c | 829 +++++----- 423 files changed, 4628 insertions(+), 3927 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see http://spark.apache.org. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.4 dated 2016-09-24 and 0.5 dated 2016-12-18
sparklyr-0.4/sparklyr/man/copy_to.Rd |only sparklyr-0.4/sparklyr/man/hive_context.Rd |only sparklyr-0.4/sparklyr/man/java_context.Rd |only sparklyr-0.4/sparklyr/man/spark_connect.Rd |only sparklyr-0.4/sparklyr/man/spark_connection_is_open.Rd |only sparklyr-0.4/sparklyr/man/spark_context.Rd |only sparklyr-0.4/sparklyr/man/spark_disconnect.Rd |only sparklyr-0.4/sparklyr/man/spark_session.Rd |only sparklyr-0.4/sparklyr/tests/testthat/derby.log |only sparklyr-0.5/sparklyr/DESCRIPTION | 23 sparklyr-0.5/sparklyr/MD5 | 302 +++-- sparklyr-0.5/sparklyr/NAMESPACE | 59 + sparklyr-0.5/sparklyr/NEWS.md |only sparklyr-0.5/sparklyr/R/config_spark.R | 10 sparklyr-0.5/sparklyr/R/connection_instances.R | 12 sparklyr-0.5/sparklyr/R/connection_spark.R | 145 +- sparklyr-0.5/sparklyr/R/connection_viewer.R | 9 sparklyr-0.5/sparklyr/R/data_copy.R | 32 sparklyr-0.5/sparklyr/R/data_csv.R | 66 + sparklyr-0.5/sparklyr/R/data_interface.R | 160 ++ sparklyr-0.5/sparklyr/R/dbi_spark_table.R | 2 sparklyr-0.5/sparklyr/R/dplyr_do.R |only sparklyr-0.5/sparklyr/R/dplyr_spark.R | 93 - sparklyr-0.5/sparklyr/R/dplyr_spark_connection.R | 11 sparklyr-0.5/sparklyr/R/formulas.R | 30 sparklyr-0.5/sparklyr/R/imports.R | 6 sparklyr-0.5/sparklyr/R/install_spark.R | 57 - sparklyr-0.5/sparklyr/R/install_spark_versions.R | 2 sparklyr-0.5/sparklyr/R/livy_connection.R |only sparklyr-0.5/sparklyr/R/livy_install.R |only sparklyr-0.5/sparklyr/R/livy_invoke.R |only sparklyr-0.5/sparklyr/R/livy_service.R |only sparklyr-0.5/sparklyr/R/livy_sources.R |only sparklyr-0.5/sparklyr/R/ml_alternating_least_squares.R | 4 sparklyr-0.5/sparklyr/R/ml_backwards_compatibility.R | 16 sparklyr-0.5/sparklyr/R/ml_decision_tree.R | 13 sparklyr-0.5/sparklyr/R/ml_feature_transformation.R | 353 +++--- sparklyr-0.5/sparklyr/R/ml_feature_transformation_utils.R |only sparklyr-0.5/sparklyr/R/ml_generalized_linear_regression.R | 16 sparklyr-0.5/sparklyr/R/ml_gradient_boosted_tree.R | 15 sparklyr-0.5/sparklyr/R/ml_kmeans.R | 11 sparklyr-0.5/sparklyr/R/ml_lda.R | 11 sparklyr-0.5/sparklyr/R/ml_linear_regression.R | 17 sparklyr-0.5/sparklyr/R/ml_logistic_regression.R | 17 sparklyr-0.5/sparklyr/R/ml_model_print_methods.R | 26 sparklyr-0.5/sparklyr/R/ml_multilayer_perceptron.R | 19 sparklyr-0.5/sparklyr/R/ml_naive_bayes.R | 41 sparklyr-0.5/sparklyr/R/ml_one_vs_rest.R | 15 sparklyr-0.5/sparklyr/R/ml_options.R | 11 sparklyr-0.5/sparklyr/R/ml_pca.R | 9 sparklyr-0.5/sparklyr/R/ml_random_forest.R | 15 sparklyr-0.5/sparklyr/R/ml_survival_regression.R | 17 sparklyr-0.5/sparklyr/R/ml_utils.R | 16 sparklyr-0.5/sparklyr/R/mutation.R | 10 sparklyr-0.5/sparklyr/R/na_actions.R |only sparklyr-0.5/sparklyr/R/precondition.R | 7 sparklyr-0.5/sparklyr/R/reexports.R | 4 sparklyr-0.5/sparklyr/R/sdf_interface.R | 241 ++-- sparklyr-0.5/sparklyr/R/sdf_saveload.R | 44 sparklyr-0.5/sparklyr/R/sdf_wrapper.R | 41 sparklyr-0.5/sparklyr/R/spark_compile.R | 7 sparklyr-0.5/sparklyr/R/spark_connection.R | 152 +- sparklyr-0.5/sparklyr/R/spark_dataframe.R | 13 sparklyr-0.5/sparklyr/R/spark_deserialize.R | 23 sparklyr-0.5/sparklyr/R/spark_extensions.R | 16 sparklyr-0.5/sparklyr/R/spark_gateway.R |only sparklyr-0.5/sparklyr/R/spark_hive.R | 6 sparklyr-0.5/sparklyr/R/spark_invoke.R | 62 - sparklyr-0.5/sparklyr/R/spark_jobj.R | 73 - sparklyr-0.5/sparklyr/R/spark_magrittr.R | 4 sparklyr-0.5/sparklyr/R/spark_serialize.R | 20 sparklyr-0.5/sparklyr/R/spark_shell.R | 569 ++++++---- sparklyr-0.5/sparklyr/R/spark_version.R | 44 sparklyr-0.5/sparklyr/R/tables_spark.R |only sparklyr-0.5/sparklyr/R/tbl_spark.R |only sparklyr-0.5/sparklyr/R/test_connection.R |only sparklyr-0.5/sparklyr/R/utils.R | 93 + sparklyr-0.5/sparklyr/R/zzz.R |only sparklyr-0.5/sparklyr/README.md | 113 + sparklyr-0.5/sparklyr/inst/conf/config-template.yml | 10 sparklyr-0.5/sparklyr/inst/extdata/install_spark.csv | 12 sparklyr-0.5/sparklyr/inst/java/commons-csv-1.1.jar |only sparklyr-0.5/sparklyr/inst/java/spark-csv_2.11-1.3.0.jar |only sparklyr-0.5/sparklyr/inst/java/sparklyr-1.5-2.10.jar |only sparklyr-0.5/sparklyr/inst/java/sparklyr-1.6-2.10.jar |binary sparklyr-0.5/sparklyr/inst/java/sparklyr-2.0-2.11.jar |binary sparklyr-0.5/sparklyr/inst/java/univocity-parsers-1.5.1.jar |only sparklyr-0.5/sparklyr/inst/livy |only sparklyr-0.5/sparklyr/inst/staticdocs/index.r | 10 sparklyr-0.5/sparklyr/java/backend.scala | 348 +++++- sparklyr-0.5/sparklyr/java/handler.scala | 231 ---- sparklyr-0.5/sparklyr/java/invoke.scala |only sparklyr-0.5/sparklyr/java/logging.scala | 10 sparklyr-0.5/sparklyr/java/stream.scala |only sparklyr-0.5/sparklyr/java/tracker.scala |only sparklyr-0.5/sparklyr/java/utils.scala | 27 sparklyr-0.5/sparklyr/man/copy_to.spark_connection.Rd |only sparklyr-0.5/sparklyr/man/ft_binarizer.Rd | 21 sparklyr-0.5/sparklyr/man/ft_bucketizer.Rd | 10 sparklyr-0.5/sparklyr/man/ft_discrete_cosine_transform.Rd | 12 sparklyr-0.5/sparklyr/man/ft_elementwise_product.Rd | 13 sparklyr-0.5/sparklyr/man/ft_index_to_string.Rd | 10 sparklyr-0.5/sparklyr/man/ft_one_hot_encoder.Rd | 10 sparklyr-0.5/sparklyr/man/ft_quantile_discretizer.Rd | 14 sparklyr-0.5/sparklyr/man/ft_regex_tokenizer.Rd |only sparklyr-0.5/sparklyr/man/ft_sql_transformer.Rd | 15 sparklyr-0.5/sparklyr/man/ft_string_indexer.Rd | 11 sparklyr-0.5/sparklyr/man/ft_tokenizer.Rd |only sparklyr-0.5/sparklyr/man/ft_vector_assembler.Rd | 12 sparklyr-0.5/sparklyr/man/invoke.Rd | 32 sparklyr-0.5/sparklyr/man/livy_config.Rd |only sparklyr-0.5/sparklyr/man/livy_install.Rd |only sparklyr-0.5/sparklyr/man/livy_service.Rd |only sparklyr-0.5/sparklyr/man/ml_als_factorization.Rd | 5 sparklyr-0.5/sparklyr/man/ml_decision_tree.Rd | 5 sparklyr-0.5/sparklyr/man/ml_generalized_linear_regression.Rd | 5 sparklyr-0.5/sparklyr/man/ml_gradient_boosted_trees.Rd | 5 sparklyr-0.5/sparklyr/man/ml_kmeans.Rd | 5 sparklyr-0.5/sparklyr/man/ml_lda.Rd | 5 sparklyr-0.5/sparklyr/man/ml_linear_regression.Rd | 5 sparklyr-0.5/sparklyr/man/ml_logistic_regression.Rd | 5 sparklyr-0.5/sparklyr/man/ml_multilayer_perceptron.Rd | 5 sparklyr-0.5/sparklyr/man/ml_naive_bayes.Rd | 5 sparklyr-0.5/sparklyr/man/ml_one_vs_rest.Rd | 5 sparklyr-0.5/sparklyr/man/ml_options.Rd | 10 sparklyr-0.5/sparklyr/man/ml_pca.Rd | 5 sparklyr-0.5/sparklyr/man/ml_prepare_dataframe.Rd | 5 sparklyr-0.5/sparklyr/man/ml_prepare_inputs.Rd | 9 sparklyr-0.5/sparklyr/man/ml_random_forest.Rd | 5 sparklyr-0.5/sparklyr/man/ml_survival_regression.Rd | 5 sparklyr-0.5/sparklyr/man/ml_tree_feature_importance.Rd | 4 sparklyr-0.5/sparklyr/man/na.replace.Rd | 2 sparklyr-0.5/sparklyr/man/pipe.Rd | 4 sparklyr-0.5/sparklyr/man/reexports.Rd |only sparklyr-0.5/sparklyr/man/register_extension.Rd | 16 sparklyr-0.5/sparklyr/man/sdf-saveload.Rd | 2 sparklyr-0.5/sparklyr/man/sdf_copy_to.Rd | 21 sparklyr-0.5/sparklyr/man/sdf_mutate.Rd | 2 sparklyr-0.5/sparklyr/man/sdf_persist.Rd |only sparklyr-0.5/sparklyr/man/sdf_quantile.Rd |only sparklyr-0.5/sparklyr/man/sdf_schema.Rd |only sparklyr-0.5/sparklyr/man/sdf_with_unique_id.Rd | 6 sparklyr-0.5/sparklyr/man/spark-api.Rd |only sparklyr-0.5/sparklyr/man/spark-connections.Rd |only sparklyr-0.5/sparklyr/man/spark_compile.Rd | 2 sparklyr-0.5/sparklyr/man/spark_connection.Rd | 13 sparklyr-0.5/sparklyr/man/spark_dataframe.Rd | 13 sparklyr-0.5/sparklyr/man/spark_jobj.Rd | 18 sparklyr-0.5/sparklyr/man/spark_load_table.Rd |only sparklyr-0.5/sparklyr/man/spark_log.Rd | 22 sparklyr-0.5/sparklyr/man/spark_read_csv.Rd | 63 - sparklyr-0.5/sparklyr/man/spark_read_json.Rd | 23 sparklyr-0.5/sparklyr/man/spark_read_parquet.Rd | 23 sparklyr-0.5/sparklyr/man/spark_save_table.Rd |only sparklyr-0.5/sparklyr/man/spark_version.Rd | 22 sparklyr-0.5/sparklyr/man/spark_version_from_home.Rd |only sparklyr-0.5/sparklyr/man/spark_web.Rd | 4 sparklyr-0.5/sparklyr/man/spark_write_csv.Rd | 9 sparklyr-0.5/sparklyr/man/spark_write_json.Rd | 10 sparklyr-0.5/sparklyr/man/spark_write_parquet.Rd | 10 sparklyr-0.5/sparklyr/man/tbl_cache.Rd | 20 sparklyr-0.5/sparklyr/man/tbl_uncache.Rd | 13 sparklyr-0.5/sparklyr/tests/testthat/helper-initialize.R | 50 sparklyr-0.5/sparklyr/tests/testthat/test-dplyr-do.R |only sparklyr-0.5/sparklyr/tests/testthat/test-feature-transformers.R |only sparklyr-0.5/sparklyr/tests/testthat/test-install-spark.R | 2 sparklyr-0.5/sparklyr/tests/testthat/test-ml-generalized-linear-regression.R | 5 sparklyr-0.5/sparklyr/tests/testthat/test-ml-kmeans.R | 5 sparklyr-0.5/sparklyr/tests/testthat/test-ml-linear-regression.R | 5 sparklyr-0.5/sparklyr/tests/testthat/test-ml-saveload.R | 26 sparklyr-0.5/sparklyr/tests/testthat/test-naive-bayes.R |only sparklyr-0.5/sparklyr/tests/testthat/test-read-write.R |only sparklyr-0.5/sparklyr/tests/testthat/test-serialization.R | 72 + sparklyr-0.5/sparklyr/tests/testthat/test.csv |only 174 files changed, 2867 insertions(+), 1725 deletions(-)
Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a
probabilistic programming language that implements full Bayesian statistical
inference via Markov Chain Monte Carlo, rough Bayesian inference via 'variational'
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need
to derive the partial derivatives.
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cph] (R/cxxfunplus.R),
The R Core Team [cph] (R/pairs.R, R/dynGet.R),
Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R),
Hadley Wickham [cph] (R/rtools.R),
Joel de Guzman [cph] (Boost),
John Fletcher [cph] (Boost),
Thomas Heller [cph] (Boost),
Eric Niebler [cph] (Boost)
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.12.1 dated 2016-09-12 and 2.13.2 dated 2016-12-18
DESCRIPTION | 25 MD5 | 93 + R/dynGet.R |only R/expose_stan_functions.R | 13 R/git_rstan_head.R | 1 R/makefile_op.R | 2 R/misc.R | 54 - R/pairs.R | 34 R/plugin.R | 2 R/rstan.R | 65 - R/rstan_package_skeleton.R | 75 - R/rtools.R | 9 R/stan_plot_helpers.R | 54 - R/stan_plot_options.R | 8 R/stanc.R | 33 R/stanfit-class.R | 13 R/stanmodel-class.R | 103 +- R/sysdata.rda |binary build/vignette.rds |binary inst/CITATION | 45 inst/NEWS | 28 inst/doc/external.R |only inst/doc/external.Rmd |only inst/doc/external.html |only inst/doc/rstan.R | 2 inst/doc/rstan.Rmd | 2 inst/doc/rstan.html | 158 +-- inst/doc/stanfit-objects.Rmd | 4 inst/doc/stanfit-objects.html | 168 +-- inst/include/boost_not_in_BH/boost/exception |only inst/include/rstan/stan_fit.hpp | 2 man/expose_stan_functions.Rd | 18 man/figures |only man/read_rdump.Rd | 5 man/rstan.Rd | 9 man/rstan.package.skeleton.Rd | 44 man/stan_model.Rd | 13 man/stan_plot.Rd | 2 man/stanc.Rd | 13 man/stanfit-class.Rd | 7 man/stanfit-method-logprob.Rd | 24 man/stanfit-method-pairs.Rd | 15 man/stanfit-method-traceplot.Rd | 9 src/init.cpp | 4 src/stanc.cpp | 7 tools/stan-functions.txt | 1265 +++++++++++++-------------- vignettes/besselK.hpp |only vignettes/external.Rmd |only vignettes/fib.hpp |only vignettes/rstan.Rmd | 2 vignettes/rstan.bib | 2 vignettes/stanfit-objects.Rmd | 4 52 files changed, 1268 insertions(+), 1168 deletions(-)
Title: Database Preferences and Skyline Computation
Description: Routines to select and visualize the maxima for a given strict
partial order. This especially includes the computation of the Pareto
frontier, also known as (Top-k) Skyline operator, and some
generalizations (database preferences).
Author: Patrick Roocks <mail@p-roocks.de>
Maintainer: Patrick Roocks <mail@p-roocks.de>
Diff between rPref versions 1.1 dated 2016-09-01 and 1.2 dated 2016-12-18
rPref-1.1/rPref/R/base-pref-macros.R |only rPref-1.2/rPref/DESCRIPTION | 16 rPref-1.2/rPref/MD5 | 76 - rPref-1.2/rPref/NAMESPACE | 24 rPref-1.2/rPref/NEWS | 43 rPref-1.2/rPref/R/RcppExports.R | 46 rPref-1.2/rPref/R/base-pref-macros.r |only rPref-1.2/rPref/R/base-pref.r | 41 rPref-1.2/rPref/R/complex-pref.r | 85 + rPref-1.2/rPref/R/general-pref.r | 72 - rPref-1.2/rPref/R/pred-succ.r | 117 ++ rPref-1.2/rPref/R/pref-classes.r | 1324 +++++++++++++--------------- rPref-1.2/rPref/R/pref-eval.r | 38 rPref-1.2/rPref/R/rPref.r | 1 rPref-1.2/rPref/R/show-pref.r | 45 rPref-1.2/rPref/R/visualize.r | 58 - rPref-1.2/rPref/inst/doc/introduction.R | 2 rPref-1.2/rPref/inst/doc/introduction.Rmd | 2 rPref-1.2/rPref/inst/doc/introduction.html | 4 rPref-1.2/rPref/inst/doc/visualization.R | 8 rPref-1.2/rPref/inst/doc/visualization.Rmd | 14 rPref-1.2/rPref/inst/doc/visualization.html | 18 rPref-1.2/rPref/inst/test/test-algorithms.R | 2 rPref-1.2/rPref/inst/test/test-hasse.R | 5 rPref-1.2/rPref/inst/test/test-psel.R | 9 rPref-1.2/rPref/man/base_pref.Rd | 290 +++--- rPref-1.2/rPref/man/base_pref_macros.Rd | 152 +-- rPref-1.2/rPref/man/complex_pref.Rd | 23 rPref-1.2/rPref/man/general_pref.Rd | 42 rPref-1.2/rPref/man/plot_btg.Rd | 292 +++--- rPref-1.2/rPref/man/plot_front.Rd | 102 +- rPref-1.2/rPref/man/pred_succ.Rd | 194 ++-- rPref-1.2/rPref/man/psel.Rd | 312 +++--- rPref-1.2/rPref/man/rPref.Rd | 148 +-- rPref-1.2/rPref/man/show.pref.Rd | 18 rPref-1.2/rPref/man/show.query.Rd | 104 +- rPref-1.2/rPref/src/RcppExports.cpp | 42 rPref-1.2/rPref/src/scalagon.cpp | 2 rPref-1.2/rPref/vignettes/introduction.Rmd | 2 rPref-1.2/rPref/vignettes/visualization.Rmd | 14 40 files changed, 1953 insertions(+), 1834 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that Armadillo
requires a fairly recent compiler; for the g++ family at least version 4.6.*
is required.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.7.500.0.0 dated 2016-10-22 and 0.7.600.1.0 dated 2016-12-18
ChangeLog | 29 + DESCRIPTION | 8 MD5 | 76 ++-- R/RcppExports.R | 2 build/vignette.rds |binary inst/NEWS.Rd | 21 + inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/RcppArmadilloExtensions/sample.h | 10 inst/include/armadillo | 4 inst/include/armadillo_bits/Glue_bones.hpp | 10 inst/include/armadillo_bits/arma_cmath.hpp | 183 +++++++++- inst/include/armadillo_bits/arma_forward.hpp | 3 inst/include/armadillo_bits/arma_rng_cxx11.hpp | 6 inst/include/armadillo_bits/arma_version.hpp | 6 inst/include/armadillo_bits/auxlib_meat.hpp | 79 ++-- inst/include/armadillo_bits/compiler_setup.hpp | 16 inst/include/armadillo_bits/diskio_meat.hpp | 2 inst/include/armadillo_bits/eop_core_bones.hpp | 1 inst/include/armadillo_bits/eop_core_meat.hpp | 3 inst/include/armadillo_bits/fn_elem.hpp | 151 ++++++++ inst/include/armadillo_bits/fn_trig.hpp | 146 +++++-- inst/include/armadillo_bits/fn_trunc_exp.hpp | 6 inst/include/armadillo_bits/fn_trunc_log.hpp | 6 inst/include/armadillo_bits/glue_atan2_bones.hpp |only inst/include/armadillo_bits/glue_atan2_meat.hpp |only inst/include/armadillo_bits/glue_hypot_bones.hpp |only inst/include/armadillo_bits/glue_hypot_meat.hpp |only inst/include/armadillo_bits/mtOp_bones.hpp | 2 inst/include/armadillo_bits/newarp_DoubleShiftQR_meat.hpp | 19 - inst/include/armadillo_bits/newarp_GenEigsSolver_bones.hpp | 12 inst/include/armadillo_bits/newarp_GenEigsSolver_meat.hpp | 74 ++-- inst/include/armadillo_bits/newarp_SymEigsSolver_bones.hpp | 12 inst/include/armadillo_bits/newarp_SymEigsSolver_meat.hpp | 74 ++-- inst/include/armadillo_bits/newarp_UpperHessenbergEigen_meat.hpp | 4 inst/include/armadillo_bits/newarp_UpperHessenbergQR_meat.hpp | 4 inst/include/armadillo_bits/op_misc_bones.hpp | 15 inst/include/armadillo_bits/op_misc_meat.hpp | 90 ++++ inst/include/armadillo_bits/spop_misc_bones.hpp | 72 +++ inst/include/armadillo_bits/spop_misc_meat.hpp | 163 ++++++++ src/RcppExports.cpp | 46 -- 41 files changed, 1110 insertions(+), 245 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use in
photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse
ratios and other derived quantities from spectral data. Local maxima and
minima. Conversion between energy- and photon-based units. Wavelength
interpolation. Astronomical calculations related solar angles and day
length. Colours and vision.
Author: Pedro J. Aphalo [aut, cre],
Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.9.12 dated 2016-10-21 and 0.9.13 dated 2016-12-18
DESCRIPTION | 21 +++---- MD5 | 96 +++++++++++++++++--------------- NAMESPACE | 7 ++ NEWS | 18 +++++- R/auto.hinges.r | 2 R/copy.attr.R | 18 +++--- R/d2.fel.data.r |only R/d2.spectrum.r | 44 +++++---------- R/fel.spectrum.r | 18 ++---- R/irradiance.r | 2 R/spct.absorbance.R | 2 R/spct.absorptance.R | 2 R/spct.classes.r | 28 ++++++--- R/spct.conversion.R | 73 +++++++++++++++++++++--- R/spct.irrad.r | 2 R/spct.peaks.r | 9 ++- R/spct.ratios.R | 16 ++--- R/spct.reflectance.r | 2 R/spct.response.R | 2 R/spct.summaries.r | 26 ++++++++ R/spct.tag.r | 2 R/spct.transmittance.r | 2 R/spct.trim.r | 46 +++++++++++++++ R/sun.calc.r | 55 ++++++++++++++++++ build/vignette.rds |binary data/D2-FEL-constants.rda |only inst/CITATION | 2 inst/doc/userguide-astronomy.Rmd | 14 ++++ inst/doc/userguide-astronomy.html | 32 +++++----- inst/doc/userguide-intro.Rmd | 2 inst/doc/userguide-intro.html | 8 +- inst/doc/userguide-radiation.R | 6 ++ inst/doc/userguide-radiation.Rmd | 22 ++++++- inst/doc/userguide-radiation.html | 111 ++++++++++++++++++++++++++++++++++++-- inst/staticdocs/index.r | 4 + man/D2.UV586.Rd |only man/D2.UV653.Rd |only man/D2.UV654.Rd |only man/D2_spectrum.Rd | 8 +- man/FEL.BN.9101.165.Rd |only man/FEL_spectrum.Rd | 10 +-- man/copy_attributes.Rd | 4 - man/cps2irrad.Rd | 8 ++ man/e_ratio.Rd | 9 +-- man/eq_ratio.Rd | 9 +-- man/q_ratio.Rd | 9 +-- man/qe_ratio.Rd | 9 +-- man/sun_angles.Rd | 15 +++++ man/trim_spct.Rd | 10 +++ vignettes/userguide-astronomy.Rmd | 14 ++++ vignettes/userguide-intro.Rmd | 2 vignettes/userguide-radiation.Rmd | 22 ++++++- 52 files changed, 616 insertions(+), 207 deletions(-)
Title: Programming with Big Data -- Interface to ZeroMQ
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.1.0 rc1)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] (file transfer),
George Ostrouchov [aut] (Mac OSX),
Whit Armstrong [ctb] (some functions are modified from the rzmq package
for backwards compatibility),
Brian Ripley [ctb] (C code of shellexec, and Solaris),
R Core team [ctb] (some functions are modified from the R source code),
Philipp A. [ctb] (Fedora)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.2-4 dated 2016-09-22 and 0.2-5 dated 2016-12-18
ChangeLog | 20 ++++++++++++++++++++ DESCRIPTION | 11 ++++++----- MD5 | 18 +++++++++--------- inst/doc/pbdZMQ-guide.Rnw | 8 ++------ inst/doc/pbdZMQ-guide.pdf |binary src/zmqsrc/src/curve_client.cpp | 6 ++++-- src/zmqsrc/src/curve_server.cpp | 6 ++++-- vignettes/pbdZMQ-guide.Rnw | 8 ++------ vignettes/pbdZMQ-include/01-copyright.tex | 2 +- vignettes/pbdZMQ-include/05-cs.tex | 2 +- 10 files changed, 49 insertions(+), 32 deletions(-)
Title: Plotting Field Plans for Agricultural Experiments
Description: A function for plotting maps of agricultural field experiments that
are laid out in grids.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between desplot versions 1.0 dated 2015-12-14 and 1.1 dated 2016-12-18
desplot-1.0/desplot/inst/doc/desplot.R |only desplot-1.0/desplot/inst/doc/desplot.Rmd |only desplot-1.0/desplot/inst/doc/desplot.html |only desplot-1.0/desplot/vignettes/desplot.Rmd |only desplot-1.1/desplot/DESCRIPTION | 10 desplot-1.1/desplot/MD5 | 25 desplot-1.1/desplot/NAMESPACE | 1 desplot-1.1/desplot/R/desplot.r | 542 ++++++++++----------- desplot-1.1/desplot/build/vignette.rds |binary desplot-1.1/desplot/inst/doc/desplot_examples.R |only desplot-1.1/desplot/inst/doc/desplot_examples.Rmd |only desplot-1.1/desplot/inst/doc/desplot_examples.html |only desplot-1.1/desplot/man/RedGrayBlue.Rd | 10 desplot-1.1/desplot/man/desplot.Rd | 90 ++- desplot-1.1/desplot/man/panel.outlinelevelplot.Rd | 6 desplot-1.1/desplot/tests |only desplot-1.1/desplot/vignettes/desplot.bib | 10 desplot-1.1/desplot/vignettes/desplot_examples.Rmd |only 18 files changed, 350 insertions(+), 344 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups
preprocessed through matching, weighting or subclassification, for example,
using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching',
'CBPS', and 'ebal' for assessing balance on the output of their preprocessing functions. Users
can also specify data for balance assessment not generated through the above packages.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah@unc.edu>
Diff between cobalt versions 1.3.0 dated 2016-10-23 and 1.3.1 dated 2016-12-18
cobalt-1.3.0/cobalt/R/Under_construction |only cobalt-1.3.0/cobalt/R/f.build.R |only cobalt-1.3.1/cobalt/DESCRIPTION | 16 cobalt-1.3.1/cobalt/MD5 | 49 +- cobalt-1.3.1/cobalt/NAMESPACE | 4 cobalt-1.3.1/cobalt/R/bal.plot.R | 7 cobalt-1.3.1/cobalt/R/bal.tab.R | 225 ++++++++--- cobalt-1.3.1/cobalt/R/do_not_include |only cobalt-1.3.1/cobalt/R/get.C.R | 9 cobalt-1.3.1/cobalt/R/love.plot.R | 511 ++++++++++++++------------ cobalt-1.3.1/cobalt/R/print.bal.tab.R | 18 cobalt-1.3.1/cobalt/R/utilities.R |only cobalt-1.3.1/cobalt/R/x2base.R | 227 ++++++++++- cobalt-1.3.1/cobalt/inst/doc/cobalt.R | 48 +- cobalt-1.3.1/cobalt/inst/doc/cobalt.Rmd | 99 +++-- cobalt-1.3.1/cobalt/inst/doc/cobalt.html | 160 ++++---- cobalt-1.3.1/cobalt/man/bal.tab.CBPS.Rd | 4 cobalt-1.3.1/cobalt/man/bal.tab.Match.Rd | 4 cobalt-1.3.1/cobalt/man/bal.tab.Rd | 9 cobalt-1.3.1/cobalt/man/bal.tab.df.formula.Rd | 55 +- cobalt-1.3.1/cobalt/man/bal.tab.ebalance.Rd |only cobalt-1.3.1/cobalt/man/bal.tab.matchit.Rd | 4 cobalt-1.3.1/cobalt/man/bal.tab.ps.Rd | 4 cobalt-1.3.1/cobalt/man/love.plot.Rd | 15 cobalt-1.3.1/cobalt/vignettes/cobalt.Rmd | 99 +++-- 25 files changed, 1006 insertions(+), 561 deletions(-)