Title: BMRB Data Access and Visualization
Description: The Biological Magnetic Resonance Data Bank (BMRB,<http://www.bmrb.wisc.edu/>) collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR(Nuclear Magnetic Resonance) spectroscopic investigations of biological macromolecules and metabolites. This package provides an interface to BMRB database for easy data access and includes a minimal set of data visualization functions. Users are encouraged to make their own data visualizations using BMRB data.
Author: Kumaran Baskaran
Maintainer: Kumaran Baskaran<kbaskaran@bmrb.wisc.edu>
Diff between RBMRB versions 2.0 dated 2016-11-18 and 2.0.2 dated 2017-01-05
DESCRIPTION | 10 MD5 | 15 - NAMESPACE | 3 R/RBMRB.R | 540 +++++++++++++++++++++++++++---------- man/chemical_shift_hist.Rd |only man/chemical_shift_hists.Rd |only man/convert_cs_to_c13hsqc.Rd | 2 man/fetch_atom_chemical_shifts.Rd | 4 man/fetch_entry_chemical_shifts.Rd | 6 man/fetch_res_chemical_shifts.Rd |only 10 files changed, 420 insertions(+), 160 deletions(-)
Title: Input/Output Functionality for "PO" and "POT" Message
Translation Files
Description: Read and write PO and POT files, for package translations.
Author: Richard Cotton [aut, cre],
Thomas Leeper [aut]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between poio versions 0.0-1 dated 2016-10-30 and 0.0-2 dated 2017-01-05
DESCRIPTION | 16 MD5 | 45 +- NAMESPACE | 13 NEWS |only R/fix_metadata.R | 26 + R/generate_po_from_pot.R | 7 R/get_n_plural_forms.R | 5 R/language_codes-dataset.R | 5 R/plural_forms-dataset.R | 3 R/po-object.R |only R/print.R |only R/read.R | 75 ---- R/summary.R |only R/write.R | 24 - data/language_codes.RData |binary data/plural_forms.RData |binary man/fix_metadata.Rd | 12 man/generate_po_from_pot.Rd | 6 man/language_codes.Rd | 5 man/plural_forms.Rd | 3 man/po.Rd |only man/print.po.Rd |only man/read_po.Rd | 60 --- man/summary.po.Rd |only tests/testthat.R | 47 ++ tests/testthat/test-empty.R | 202 +++++------- tests/testthat/test-summerof69.R | 649 ++++++++++++++++++--------------------- 27 files changed, 562 insertions(+), 641 deletions(-)
Title: Combination of Factorial Methods and Cluster Analysis
Description: Multivariate exploration of a data table with factorial
analysis and cluster methods.
Author: Campo Elias Pardo <cepardot@unal.edu.co>, Pedro Cesar del Campo
<pcdelcampon@unal.edu.co> and Camilo Jose Torres
<cjtorresj@unal.edu.co>, with the contributions from Ivan Diaz
<ildiazm@unal.edu.co>, Mauricio Sadinle
<msadinleg@unal.edu.co>.
Maintainer: Campo Elias Pardo <cepardot@unal.edu.co>
Diff between FactoClass versions 1.1.2 dated 2015-08-05 and 1.1.3 dated 2017-01-05
DESCRIPTION | 8 MD5 | 14 - R/FactoClass.tex.R | 498 +++++++++++++++++++++++++-------------------------- R/cluster.carac.R | 31 ++- R/dudi.tex.R | 113 +++++------ R/plot.dudi.R | 27 +- man/cluster.carac.Rd | 4 man/dudi.tex.Rd | 106 +++++----- 8 files changed, 406 insertions(+), 395 deletions(-)
Title: Differential Functioning of Items and Tests
Description: A set of functions to perform Raju, van der Linden and Fleer's
(1995, doi:10.1177/014662169501900405) Differential Functioning of Items
and Tests (DFIT) analyses. It includes functions to use the Monte Carlo Item
Parameter Replication approach (Oshima, Raju, & Nanda, 2006, doi:10.1111/j.
1745-3984.2006.00001.x) for obtaining the associated statistical significance
tests cut-off points. They may also be used for a priori and post-hoc power
calculations (Cervantes, 2017, doi:10.18637/jss.v076.i05).
Author: Victor H. Cervantes <vhcervantesb@unal.edu.co>
Maintainer: Victor H. Cervantes <vhcervantesb@unal.edu.co>
Diff between DFIT versions 1.0-2 dated 2015-02-01 and 1.0-3 dated 2017-01-05
DESCRIPTION | 24 ++++++----- MD5 | 84 +++++++++++++++++++-------------------- NAMESPACE | 3 - NEWS | 7 +++ R/DFIT.R | 17 ++++--- R/IPR.R | 37 ++++++++--------- R/IRTSE.R | 18 ++++---- R/MantelHaenszel.R | 10 ++-- R/NCDIF.R | 30 ++++++------- R/RajuAreas.R | 12 ++--- R/data.R | 10 +--- README | 23 +++++++++- inst/CITATION | 29 +++++++++---- man/Ase1pl.Rd | 7 +-- man/Ase2pl.Rd | 7 +-- man/Ase3pl.Rd | 7 +-- man/AseIrt.Rd | 8 ++- man/Bound3PlIpr.Rd | 6 +- man/Calculate1plProb.Rd | 5 +- man/Calculate2plProb.Rd | 5 +- man/Calculate3plProb.Rd | 5 +- man/CalculateGrmExp.Rd | 7 +-- man/CalculateItemDifferences.Rd | 5 +- man/CalculatePcmExp.Rd | 7 +-- man/Cdif.Rd | 13 +++--- man/CrossedProbabilities.Rd | 11 ++--- man/CutoffIpr.Rd | 22 ++++++---- man/DFIT.Rd | 21 +++++---- man/DeltaMhIrt.Rd | 7 ++- man/Dtf.Rd | 13 +++--- man/Ipr.Rd | 8 ++- man/IprMh.Rd | 14 +++--- man/IprNcdif.Rd | 12 +++-- man/IprSam.Rd | 10 ++-- man/IprUam.Rd | 10 ++-- man/IrtMh.Rd | 13 +++--- man/Ncdif.Rd | 13 +++--- man/PlotNcdif.Rd | 7 ++- man/ProductProbabilities.Rd | 9 ++-- man/SignedArea.Rd | 11 +++-- man/UnsignedArea.Rd | 11 +++-- man/dichotomousItemParameters.Rd | 10 ++-- man/polytomousItemParameters.Rd | 10 ++-- 43 files changed, 347 insertions(+), 251 deletions(-)
Title: N-Gram Analysis of Biological Sequences
Description: Tools for extraction and analysis of various
n-grams (k-mers) derived from biological sequences (proteins
or nucleic acids). Contains QuiPT (quick permutation test) for fast
feature-filtering of the n-gram data.
Author: Michal Burdukiewicz [cre, aut],
Piotr Sobczyk [aut],
Chris Lauber [aut]
Maintainer: Michal Burdukiewicz <michalburdukiewicz@gmail.com>
Diff between biogram versions 1.3 dated 2016-09-21 and 1.4 dated 2017-01-05
CHANGELOG | 57 DESCRIPTION | 8 MD5 | 192 +-- NAMESPACE | 119 +- R/aaprop.R | 1818 +++++++++++++++---------------- R/add_remove_ngrams.R | 240 ++-- R/biogram.R | 190 +-- R/calc_ed.R | 497 ++++---- R/calc_si.R | 107 - R/chi_square.R | 56 R/cluster_reg_exp.R | 198 +-- R/construct_ngrams.R | 174 +-- R/count_multigrams.R | 82 - R/count_ngrams.R | 360 +++--- R/count_specified.R | 178 +-- R/create_encoding.R |only R/criterion_distribution.R | 186 +-- R/criterions.R | 142 +- R/data_manipulation.R | 112 - R/degenerate.R | 244 ++-- R/distr_crit.R | 198 +-- R/feature_test_class.R | 384 +++--- R/human_cleave.R | 42 R/indices_and_positions.R | 194 +-- R/information_gain.R | 104 - R/is_ngram.R | 88 - R/kl_divergence.R | 54 R/ngram_coding.R | 200 +-- R/ngrams.R | 172 +-- R/position_ngrams.R | 150 +- R/seq2matrix.R | 50 R/table_ngrams.R | 112 - R/test_features.R | 338 ++--- R/utilities.R | 176 +-- README.md | 82 - build/vignette.rds |binary inst/CITATION | 48 inst/doc/overview.R | 221 +-- inst/doc/overview.Rmd | 529 ++++----- inst/doc/overview.html | 588 +++++----- man/aaprop.Rd | 1834 ++++++++++++++++---------------- man/add_1grams.Rd | 74 - man/as.data.frame.feature_test.Rd | 60 - man/binarize.Rd | 38 man/biogram-package.Rd | 196 +-- man/calc_criterion.Rd | 100 - man/calc_cs.Rd | 84 - man/calc_ed.Rd | 120 +- man/calc_ig.Rd | 96 - man/calc_kl.Rd | 92 - man/calc_pi.Rd |only man/calc_si.Rd | 106 - man/cluster_reg_exp.Rd | 78 - man/code_ngrams.Rd | 50 man/construct_ngrams.Rd | 116 +- man/count_multigrams.Rd | 112 - man/count_ngrams.Rd | 172 +-- man/count_specified.Rd | 76 - man/count_total.Rd | 76 - man/create_encoding.Rd |only man/create_feature_target.Rd | 68 - man/create_ngrams.Rd | 86 - man/criterion_distribution.Rd | 58 - man/cut.feature_test.Rd | 68 - man/decode_ngrams.Rd | 58 - man/degenerate.Rd | 82 - man/distr_crit.Rd | 68 - man/encoding2df.Rd | 73 - man/fast_crosstable.Rd | 88 - man/feature_test.Rd | 64 - man/gap_ngrams.Rd | 62 - man/get_ngrams_ind.Rd | 70 - man/human_cleave.Rd | 64 - man/is_ngram.Rd | 46 man/l2n.Rd | 60 - man/list2matrix.Rd | 60 - man/n2l.Rd | 60 - man/ngrams2df.Rd | 50 man/plot.criterion_distribution.Rd | 98 - man/position_ngrams.Rd | 76 - man/print.feature_test.Rd | 40 man/seq2ngrams.Rd | 76 - man/summary.feature_test.Rd | 48 man/table_ngrams.Rd | 76 - man/test_features.Rd | 212 +-- man/validate_encoding.Rd | 92 - tests/test-all.R | 4 tests/testthat/test_calc_ed.R | 230 ++-- tests/testthat/test_count_ngrams.R | 150 +- tests/testthat/test_create_ngrams.R | 42 tests/testthat/test_crosstable.R | 22 tests/testthat/test_get_ngrams_pos.R | 10 tests/testthat/test_is_ngram.R | 44 tests/testthat/test_position_ngrams.R | 64 - tests/testthat/test_quipt_consistency.R | 50 tests/testthat/test_seq2grams.R | 54 tests/testthat/test_table_ngrams.R | 34 vignettes/biogram_pub.bib |only vignettes/overview.Rmd | 529 ++++----- 99 files changed, 7663 insertions(+), 7643 deletions(-)
Title: Visualization of Plasmid Profile Results
Description: Contains functions developed to combine the results of querying a plasmid database using
short-read sequence typing with the results of a blast analysis against the query results.
Author: Adrian Zetner [aut, cre]
Maintainer: Adrian Zetner <adrian.zetner@phac-aspc.gc.ca>
Diff between Plasmidprofiler versions 0.1.5 dated 2017-01-05 and 0.1.6 dated 2017-01-05
DESCRIPTION | 13 +++++++------ MD5 | 4 ++-- R/main_aux.R | 7 ++++++- 3 files changed, 15 insertions(+), 9 deletions(-)
More information about Plasmidprofiler at CRAN
Permanent link
Title: Principal Axes Methods for Contingency Tables with Partition
Structures on Rows and Columns
Description: Correspondence Analysis of Contingency Tables with Simple
and Double Structures Superimposed Representations, Intra
Blocks Correspondence Analysis (IBCA), Weighted Intra Blocks
Correspondence Analysis (WIBCA).
Author: Campo Elias Pardo <cepardot@unal.edu.co>
Maintainer: Campo Elias Pardo <cepardot@unal.edu.co>
Diff between pamctdp versions 0.3.1 dated 2015-02-04 and 0.3.2 dated 2017-01-05
DESCRIPTION | 8 MD5 | 14 - NAMESPACE | 7 R/inertia.wwm.R | 435 ++++++++++++++++++++++++++-------------------------- man/inertia.wwm.Rd | 28 +-- man/multilingual.Rd | 124 +++++++------- man/partial.wwm.Rd | 187 +++++++++++----------- man/witwit.model.Rd | 2 8 files changed, 404 insertions(+), 401 deletions(-)
Title: Lightweight Sparklines for a LaTeX Document
Description: Sparklines are small plots (about one line of text high),
made popular by Edward Tufte. This package is the interface from R
to the LaTeX package sparklines by Andreas Loeffer and Dan Luecking
(<http://www.ctan.org/pkg/sparklines>). It can work with Sweave or
knitr or other engines that produce TeX. The package can be used to
plot vectors, matrices, data frames, time series (in ts or zoo format).
Author: Boris Veytsman [aut, cre]
Maintainer: Boris Veytsman <borisv@lk.net>
Diff between ltxsparklines versions 1.0 dated 2016-12-27 and 1.1.2 dated 2017-01-05
DESCRIPTION | 10 MD5 | 20 + NEWS |only R/ltxsparklines.R | 52 +++-- build/partial.rdb |binary inst/doc/ltxsparklines.R | 127 +++++++++++- inst/doc/ltxsparklines.Rnw | 442 ++++++++++++++++++++++++++++++++++++++++--- inst/doc/ltxsparklines.pdf |binary man/ltxsparklines-package.Rd | 71 ++++++ man/sparkline.Rd | 72 +++++-- vignettes/ltxsparklines.Rnw | 442 ++++++++++++++++++++++++++++++++++++++++--- vignettes/ltxsparklines.bib |only 12 files changed, 1133 insertions(+), 103 deletions(-)
Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model.
Author: Hana Sevcikova (hanas@uw.edu), Leontine Alkema (alkema@nus.edu.sg), Adrian Raftery (raftery@uw.edu), Bailey Fosdick (bfosdick@uw.edu), Patrick Gerland (gerland@un.org)
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesTFR versions 5.0-4 dated 2016-11-21 and 5.0-5 dated 2017-01-05
ChangeLog | 9 ++++++++- DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/plot_functions.R | 2 ++ R/predict_tfr.R | 34 +++++++++++++++++----------------- man/bayesTFR-package.Rd | 4 ++-- man/predict-tfr.Rd | 4 +++- 7 files changed, 42 insertions(+), 31 deletions(-)
Title: Algorithms for Quantitative Pedology
Description: A collection of algorithms related to modeling of soil resources, soil classification, soil profile aggregation, and visualization.
Author: Dylan Beaudette [aut, cre], Pierre Roudier [aut, ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@ca.usda.gov>
Diff between aqp versions 1.9.14 dated 2016-11-04 and 1.10 dated 2017-01-05
DESCRIPTION | 12 +++++++----- MD5 | 17 +++++++++-------- NEWS | 4 ++++ R/SPC-find_horizons.R |only R/SoilProfileCollection-methods.R | 8 ++++---- R/munsell2rgb.R | 11 +++++++---- R/setters.R | 19 +++++++++++++++---- R/sim.R | 18 ++++++++++++++---- man/aqp-package.Rd | 13 +++---------- man/ca630.Rd | 2 +- 10 files changed, 64 insertions(+), 40 deletions(-)
Title: 3D Scatter Plot
Description: Plots a three dimensional (3D) point cloud.
Author: Uwe Ligges <ligges@statistik.tu-dortmund.de>, Martin Maechler, Sarah Schnackenberg
Maintainer: Uwe Ligges <ligges@statistik.tu-dortmund.de>
Diff between scatterplot3d versions 0.3-37 dated 2016-05-24 and 0.3-38 dated 2017-01-05
CHANGES | 1 + DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/scatterplot3d.R | 6 +++++- inst/doc/s3d.pdf |binary vignettes/SFBs3d_Related.tex | 2 +- 6 files changed, 16 insertions(+), 11 deletions(-)
Title: R Interface to 'WinEdt'
Description: A plug in for using 'WinEdt' as an editor for R.
Author: Uwe Ligges <Uwe.Ligges@R-project.org>
with contributions (the original R-Sweave mode) from Gilbert Ritschard and Karl Koeller
Maintainer: Uwe Ligges <Uwe.Ligges@R-project.org>
Diff between RWinEdt versions 2.0-5 dated 2015-07-29 and 2.0-6 dated 2017-01-05
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- inst/CHANGES | 10 ++++++++++ inst/doc/RWinEdt.Rnw | 2 +- inst/doc/RWinEdt.pdf |binary src/Makevars.win | 2 +- vignettes/RWinEdt.Rnw | 2 +- vignettes/RWinEdt.pdf |binary 8 files changed, 26 insertions(+), 16 deletions(-)
Title: Helpers for Parameters in Black-Box Optimization, Tuning and
Machine Learning
Description: Functions for parameter descriptions and operations in black-box
optimization, tuning and machine learning. Parameters can be described
(type, constraints, defaults, etc.), combined to parameter sets and can in
general be programmed on. A useful OptPath object (archive) to log function
evaluations is also provided.
Author: Bernd Bischl [aut, cre],
Michel Lang [aut],
Jakob Bossek [aut],
Daniel Horn [aut],
Karin Schork [ctb],
Jakob Richter [aut],
Pascal Kerschke [aut]
Maintainer: Bernd Bischl <bernd_bischl@gmx.net>
Diff between ParamHelpers versions 1.9 dated 2016-09-09 and 1.10 dated 2017-01-05
DESCRIPTION | 10 LICENSE | 2 MD5 | 92 +++-- NAMESPACE | 17 - NEWS | 11 R/LearnerParam.R | 12 R/OptPath_plotter.R | 73 ++++ R/aParam.R | 129 +++++++- R/convertDiscrete.R | 8 R/convertParamSetToIrace.R | 13 R/evaluateParamExpressions.R | 4 R/filterParams.R | 8 R/generateDesignOfDefaults.R |only R/getParamTypeCounts.R | 13 R/getRequirements.R |only R/getTypeStrings.R | 20 + R/isFeasible.R | 43 -- R/isSpecialValue.R |only R/isType.R | 37 -- R/isTypeString.R |only R/isVector.R | 7 R/listToDfOneRow.R |only R/makeLearnerParamFuns.R | 150 +-------- R/makeParamFuns.R | 398 +------------------------ R/paramValueToString.R | 61 +-- R/renderOptPathPlot.R | 6 R/sample.R | 2 R/utils.R | 10 R/zzz.R | 1 man/LearnerParam.Rd | 24 - man/Param.Rd | 41 +- man/discreteNameToValue.Rd | 3 man/discreteValueToName.Rd | 3 man/evaluateParamExpressions.Rd | 4 man/filterParams.Rd | 4 man/generateDesignOfDefaults.Rd |only man/getRequirements.Rd |only man/getTypeStrings.Rd | 9 man/isSpecialValue.Rd |only man/isType.Rd | 5 man/isTypeString.Rd |only man/renderOptPathPlot.Rd | 4 tests/testthat/Rplots.pdf |binary tests/testthat/test_LearnerParam.R | 2 tests/testthat/test_Param.R | 13 tests/testthat/test_convertParamSetToIrace.R | 24 - tests/testthat/test_generateDesignOfDefaults.R |only tests/testthat/test_getParamTypeCounts.R | 2 tests/testthat/test_getRequirements.R |only tests/testthat/test_isFeasible.R | 11 tests/testthat/test_isSpecialValue.R |only tests/testthat/test_paramValueToString.R | 5 tests/testthat/test_renderOptPathPlot.R | 5 53 files changed, 541 insertions(+), 745 deletions(-)
Title: Multi-Step Adaptive Elastic-Net
Description: Multi-step adaptive elastic-net (MSAENet) algorithm for
feature selection in high-dimensional regressions proposed in
Xiao and Xu (2015) <DOI:10.1080/00949655.2015.1016944>,
with additional support for multi-step adaptive MCP-Net
(MSAMNet) and multi-step adaptive SCAD-Net (MSASNet) methods.
Author: Nan Xiao [aut, cre]
Maintainer: Nan Xiao <me@nanx.me>
Diff between msaenet versions 1.1 dated 2016-12-28 and 2.0 dated 2017-01-05
msaenet-1.1/msaenet/R/msaenet-misc.R |only msaenet-1.1/msaenet/R/msaenet-tune.R |only msaenet-1.1/msaenet/man/msaenet.tune.glmnet.alpha.Rd |only msaenet-2.0/msaenet/DESCRIPTION | 12 +- msaenet-2.0/msaenet/MD5 | 66 ++++++++------- msaenet-2.0/msaenet/NAMESPACE | 10 ++ msaenet-2.0/msaenet/NEWS.md | 14 +++ msaenet-2.0/msaenet/R/aenet.R | 83 ++++++++++--------- msaenet-2.0/msaenet/R/amnet.R |only msaenet-2.0/msaenet/R/asnet.R |only msaenet-2.0/msaenet/R/msaenet-inspect.R |only msaenet-2.0/msaenet/R/msaenet-package.R | 15 ++- msaenet-2.0/msaenet/R/msaenet-tune-glmnet.R |only msaenet-2.0/msaenet/R/msaenet-tune-ncvreg.R |only msaenet-2.0/msaenet/R/msaenet-utils.R |only msaenet-2.0/msaenet/R/msaenet.R | 33 +++---- msaenet-2.0/msaenet/R/msamnet.R |only msaenet-2.0/msaenet/R/msasnet.R |only msaenet-2.0/msaenet/R/plot-msaenet.R | 22 ++--- msaenet-2.0/msaenet/R/predict-msaenet.R | 24 +++-- msaenet-2.0/msaenet/R/print-msaenet.R | 30 ++++-- msaenet-2.0/msaenet/README.md | 30 ++++-- msaenet-2.0/msaenet/inst/doc/msaenet.R | 1 msaenet-2.0/msaenet/inst/doc/msaenet.Rmd | 1 msaenet-2.0/msaenet/inst/doc/msaenet.html | 20 ++++ msaenet-2.0/msaenet/man/aenet.Rd | 7 - msaenet-2.0/msaenet/man/amnet.Rd |only msaenet-2.0/msaenet/man/asnet.Rd |only msaenet-2.0/msaenet/man/coef.msaenet.Rd | 9 +- msaenet-2.0/msaenet/man/msaenet-package.Rd | 15 ++- msaenet-2.0/msaenet/man/msaenet.Rd | 7 - msaenet-2.0/msaenet/man/msaenet.fp.Rd | 7 - msaenet-2.0/msaenet/man/msaenet.nzv.Rd | 7 - msaenet-2.0/msaenet/man/msaenet.nzv.all.Rd |only msaenet-2.0/msaenet/man/msaenet.tp.Rd | 7 - msaenet-2.0/msaenet/man/msaenet.tune.glmnet.Rd |only msaenet-2.0/msaenet/man/msaenet.tune.ncvreg.Rd |only msaenet-2.0/msaenet/man/msamnet.Rd |only msaenet-2.0/msaenet/man/msasnet.Rd |only msaenet-2.0/msaenet/man/plot.msaenet.Rd | 7 - msaenet-2.0/msaenet/man/predict.msaenet.Rd | 11 +- msaenet-2.0/msaenet/man/print.msaenet.Rd | 8 - msaenet-2.0/msaenet/vignettes/msaenet.Rmd | 1 43 files changed, 284 insertions(+), 163 deletions(-)
Title: Functions for Forest Biometrics
Description: Functions for different purposes related to Forest biometrics, including illustrative graphics, numerical computation, modeling height-diameter relationships, prediction of tree volumes, and modelling of diameter distributions. Datasets on tree height-diameter relationship, light response of moss photosynthesis, and productivity of stump-lifting machines are included.
Author: Lauri Mehtatalo
Maintainer: Lauri Mehtatalo <lauri.mehtatalo@uef.fi>
Diff between lmfor versions 1.1 dated 2015-03-10 and 1.2 dated 2017-01-05
DESCRIPTION | 10 +-- MD5 | 49 ++++++++++--------- NAMESPACE | 15 ++++- R/lmfor.R | 130 +++++++++++++++++++++++++++++++++++++++++---------- data/foto.RData |binary data/spati.RData |binary data/spati2.RData |only data/stumplift.RData |only man/HDmodels.Rd | 10 +-- man/ImputeHeights.Rd | 4 + man/NR.Rd | 21 ++++---- man/NRnum.Rd | 13 ++--- man/circle.Rd | 18 +++---- man/ddcomp.Rd |only man/fithd.Rd | 3 - man/foto.Rd | 5 + man/linesplot.Rd | 7 ++ man/lmfor-package.Rd | 6 +- man/mywhiskers.Rd | 7 +- man/plot.hdmod.Rd | 6 +- man/predvol.Rd | 4 + man/qqplotHD.Rd | 2 man/recweib.Rd | 1 man/scaleDMean.Rd | 1 man/spati.Rd | 58 ++++++++++++---------- man/spati2.Rd |only man/stumplift.Rd |only man/updown.Rd | 17 +++--- 28 files changed, 253 insertions(+), 134 deletions(-)
Title: Local Approximate Gaussian Process Regression
Description: Performs approximate GP regression for large computer experiments and spatial datasets. The approximation is based on finding small local designs for prediction (independently) at particular inputs. OpenMP and SNOW parallelization are supported for prediction over a vast out-of-sample testing set; GPU acceleration is also supported for an important subroutine. OpenMP and GPU features may require special compilation. An interface to lower-level (full) GP inference and prediction is also provided, as are associated wrapper routines for blackbox optimization under mixed equality and inequality constraints via an augmented Lagrangian scheme, and for large scale computer model calibration.
Author: Robert B. Gramacy <rbg@vt.edu>
Maintainer: Robert B. Gramacy <rbg@vt.edu>
Diff between laGP versions 1.3 dated 2016-08-07 and 1.3-1 dated 2017-01-05
ChangeLog | 8 ++ DESCRIPTION | 8 +- MD5 | 30 +++++------ NAMESPACE | 5 + R/gp.R | 38 +++++++++++++- R/gp_sep.R | 39 ++++++++++++++ demo/ALfhat.R | 5 + inst/doc/laGP.R | 6 +- inst/doc/laGP.Rnw | 6 +- inst/doc/laGP.pdf |binary man/alcGP.Rd | 15 +++++ man/optim.auglag.Rd | 2 src/gp.c | 139 ++++++++++++++++++++++++++++++++++++++++++++++++++++ src/gp_sep.c | 139 ++++++++++++++++++++++++++++++++++++++++++++++++++++ src/ieci.c | 3 - vignettes/laGP.Rnw | 6 +- 16 files changed, 413 insertions(+), 36 deletions(-)
Title: GPU Functions for R Objects
Description: Provides GPU enabled functions for R objects in a simple and
approachable manner. New gpu* and vcl* classes have been provided to
wrap typical R objects (e.g. vector, matrix), in both host and device
spaces, to mirror typical R syntax without the need to know OpenCL.
Author: Charles Determan Jr.
Maintainer: Charles Determan Jr. <cdetermanjr@gmail.com>
Diff between gpuR versions 1.2.0 dated 2016-12-21 and 1.2.1 dated 2017-01-05
DESCRIPTION | 8 +- INSTALL | 7 +- MD5 | 20 +++--- R/RcppExports.R | 40 ++++++------- R/gpuMatrix.R | 8 ++ R/vclMatrix.R | 6 +- configure | 46 ++++++++++++---- inst/doc/gpuR.pdf |binary src/RcppExports.cpp | 106 ++++++++++++++++++------------------- tests/testthat/test_cpu_deepcopy.R | 2 tests/testthat/test_deepcopy.R | 2 11 files changed, 138 insertions(+), 107 deletions(-)
Title: Survival Analysis using a Transform-Both-Sides Model
Description: Functions to perform the reliability/survival
analysis using a parametric Transform-both-sides (TBS) model.
Author: Adriano Polpo <polpo@ufscar.br>, Cassio de Campos <cassiopc@acm.org>, D. Sinha <sinhad@stat.fsu.edu>, Stuart Lipsitz <slipsitz@partners.org>, Jianchang Lin <jlin@stat.fsu.edu>
Maintainer: Cassio de Campos <cassiopc@acm.org>
Diff between TBSSurvival versions 1.2 dated 2014-12-29 and 1.3 dated 2017-01-05
TBSSurvival-1.2/TBSSurvival/tests/article.r |only TBSSurvival-1.2/TBSSurvival/tests/loadlibs.r |only TBSSurvival-1.3/TBSSurvival/DESCRIPTION | 12 - TBSSurvival-1.3/TBSSurvival/MD5 | 16 +- TBSSurvival-1.3/TBSSurvival/NAMESPACE | 7 TBSSurvival-1.3/TBSSurvival/build/vignette.rds |binary TBSSurvival-1.3/TBSSurvival/demo |only TBSSurvival-1.3/TBSSurvival/inst/CITATION | 12 - TBSSurvival-1.3/TBSSurvival/inst/doc/TBSSurvival.pdf |binary TBSSurvival-1.3/TBSSurvival/tests/simple.r | 138 ++++++++++++++----- 10 files changed, 130 insertions(+), 55 deletions(-)
Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts ('TrueType',
'OpenType', Type 1, web fonts, etc.) in R graphs, and supporting most output
formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted
into polygons or raster images, hence after the plot has been created, it no
longer relies on the font files. No external software such as 'Ghostscript' is
needed to use this package.
Author: Yixuan Qiu and authors/contributors of the
included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between showtext versions 0.4-5 dated 2016-10-14 and 0.4-6 dated 2017-01-05
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- build/vignette.rds |binary cleanup |only inst/NEWS.Rd | 7 +++++++ inst/doc/introduction.html | 8 ++++---- src/raster.c | 11 +++++++---- 7 files changed, 28 insertions(+), 17 deletions(-)
Title: 'Rcpp' Bindings to Parser for Tom's Obvious Markup Language
Description: The configuration format defined by 'TOML' (which expands to
"Tom's Obvious Markup Language") specifies an excellent format (described at
<https://github.com/toml-lang/toml>) suitable for both human editing as well
as the common uses of a machine-readable format. This package uses 'Rcpp' to
connect the 'cpptoml' parser written by Chase Geigle (in modern C++11) to R.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppTOML versions 0.0.5 dated 2015-12-19 and 0.1.0 dated 2017-01-05
ChangeLog | 28 ++ DESCRIPTION | 18 - MD5 | 18 - R/RcppExports.R | 2 R/parseToml.R | 21 + README.md | 9 inst/NEWS.Rd |only inst/include/cpptoml.h | 548 +++++++++++++++++++++++++++++++++++++------------ src/Makevars.win |only src/RcppExports.cpp | 10 src/parse.cpp | 23 ++ 11 files changed, 516 insertions(+), 161 deletions(-)
Title: An Interruptible Progress Bar with OpenMP Support for C++ in R
Packages
Description: Allows to display a progress bar in the R
console for long running computations taking place in c++ code,
and support for interrupting those computations even in multithreaded
code, typically using OpenMP.
Author: Karl Forner <karl.forner@gmail.com>
Maintainer: Karl Forner <karl.forner@gmail.com>
Diff between RcppProgress versions 0.2.1 dated 2015-01-09 and 0.3 dated 2017-01-05
CHANGELOG |only DESCRIPTION | 14 ++-- MD5 | 17 ++-- inst/examples/RcppProgressArmadillo/src/example.cpp | 2 inst/include/interruptable_progress_monitor.hpp | 69 +++----------------- inst/include/interrupts.hpp | 3 inst/include/progress.hpp | 6 - inst/include/progress_bar.hpp |only inst/include/progress_legacy.hpp |only man/RcppProgress-package.Rd | 12 +++ src/Makevars | 5 - 11 files changed, 46 insertions(+), 82 deletions(-)
Title: Text Mining of PubMed Abstracts
Description: Text mining of PubMed Abstracts (text and XML) from <http://www.ncbi.nlm.nih.gov/pubmed>.
Author: Jyoti Rani, S.Ramachandran, Ab Rauf Shah
Maintainer: S. Ramachandran <ramu@igib.in>
Diff between pubmed.mineR versions 1.0.6 dated 2017-01-04 and 1.0.7 dated 2017-01-05
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/Give_Sentences_PMC.R | 2 +- R/get_Sequences.R | 2 +- data/GeneToEntrez.rda |binary data/HGNC2UniprotID.rda |binary data/HGNCdata.rda |binary data/common_words_new.rda |binary 8 files changed, 13 insertions(+), 13 deletions(-)
Title: R Source Code Modularizer
Description: Modularizes source code. Keeps the global environment clean,
explicifies interdependencies. Inspired by 'RequireJS'<http://requirejs.org/>.
Author: Peter van den Berg [aut, cre]
Maintainer: Peter van den Berg <peter_v_d_berg@hotmail.com>
Diff between requireR versions 1.0.0.0 dated 2016-12-11 and 1.0.0.1 dated 2017-01-05
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/requireR.R | 30 ++++++++++++++++-------------- inst/doc/requireR.html | 4 ++-- man/requireR.Rd | 30 ++++++++++++++++-------------- 5 files changed, 41 insertions(+), 37 deletions(-)
More information about manipulateWidget at CRAN
Permanent link
Title: Local Fisher Discriminant Analysis
Description: Functions for performing and visualizing Local Fisher Discriminant
Analysis(LFDA), Kernel Fisher Discriminant Analysis(KLFDA), and Semi-supervised
Local Fisher Discriminant Analysis(SELF).
Author: Yuan Tang. Contributions from Nan Xiao and Zachary Deane-Mayer.
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between lfda versions 1.1.1 dated 2016-02-04 and 1.1.2 dated 2017-01-05
DESCRIPTION | 15 - LICENSE | 2 MD5 | 60 ++--- NAMESPACE | 36 +-- NEWS |only R/aaa.R | 6 R/helpers.R | 154 ++++++------- R/klfda.R | 258 +++++++++++------------ R/kmatrixGauss.R | 102 ++++----- R/lfda.R | 370 ++++++++++++++++----------------- R/lfda_visualization.R | 142 ++++++------ R/self.R | 254 +++++++++++----------- README.md | 244 +++++++++++---------- inst |only man/Cols.Rd | 36 +-- man/getAffinityMatrix.Rd | 44 +-- man/getMetricOfType.Rd | 48 ++-- man/grapes-pow-grapes.Rd | 42 +-- man/klfda.Rd | 189 ++++++++-------- man/kmatrixGauss.Rd | 115 +++++----- man/lfda.Rd | 196 ++++++++--------- man/plot.lfda.Rd | 48 ++-- man/predict.lfda.Rd | 56 ++-- man/print.lfda.Rd | 34 +-- man/repmat.Rd | 46 ++-- man/self.Rd | 160 +++++++------- tests/testthat.R | 8 tests/testthat/test_helper_functions.R | 37 +-- tests/testthat/test_klfda.R | 24 +- tests/testthat/test_lfda.R | 46 ++-- tests/testthat/test_self.R | 52 ++-- tests/testthat/test_visualization.R | 106 ++++----- 32 files changed, 1471 insertions(+), 1459 deletions(-)
Title: Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
Description: Estimation of the components of an ETAS (Epidemic Type Aftershock Sequence) model for earthquake description. Non-parametric background seismicity can be estimated through FLP (Forward Likelihood Predictive), while parametric components are estimated through maximum likelihood. The two estimation steps are alternated until convergence is obtained. For each event the probability of being a background event is estimated and used as a weight for declustering steps. Many options to control the estimation process are present, together with some diagnostic tools. Some descriptive functions for earthquakes catalogs are present; also plot, print, summary, profile methods are defined for main output (objects of class 'etasclass').
Author: Marcello Chiodi [aut, cre],
Giada Adelfio [aut]
Maintainer: Marcello Chiodi <marcello.chiodi@unipa.it>
Diff between etasFLP versions 1.3.1 dated 2016-12-07 and 1.4.0 dated 2017-01-05
ChangeLog | 4 ++++ DESCRIPTION | 14 +++++++------- MD5 | 13 +++++++------ R/plot.etasclass.R | 4 +++- inst |only man/etasFLP-package.Rd | 33 +++++++++++++++++++++++++-------- man/etasclass.Rd | 20 +++++++++++++------- man/plot.etasclass.Rd | 19 +++++++++++++++++++ 8 files changed, 78 insertions(+), 29 deletions(-)
Title: Estimating Aboveground Biomass and Its Uncertainty in Tropical
Forests
Description: Contains functions to estimate aboveground biomass/carbon and its uncertainty in tropical forests. These functions allow to (1) retrieve and to correct taxonomy, (2) estimate wood density and its uncertainty, (3) construct height-diameter models, (4) estimate the above-ground biomass/carbon at the stand level with associated uncertainty. To cite BIOMASS, please use citation("BIOMASS").
Author: Maxime REJOU-MECHAIN, Ariane TANGUY, Camille PIPONIOT, Jerome CHAVE, Bruno HERAULT
Maintainer: Maxime REJOU-MECHAIN <maxime.rejou@gmail.com>
Diff between BIOMASS versions 1.0 dated 2016-09-21 and 1.1 dated 2017-01-05
DESCRIPTION | 14 + MD5 | 42 +++-- NEWS |only R/AGBmonteCarlo.R | 347 +++++++++++++++++++++++++------------------------ R/computeAGB.R | 88 ++++++------ R/correctTaxo.R | 254 +++++++++++++++++++---------------- R/getWoodDensity.R | 328 +++++++++++++++++++++++----------------------- R/retrieveH.R | 3 build/partial.rdb |binary build/vignette.rds |only data/NouraguesHD.rda |binary inst |only man/AGBmonteCarlo.Rd | 22 ++- man/NouraguesHD.Rd | 10 - man/computeAGB.Rd | 7 man/computeE.Rd | 2 man/correctTaxo.Rd | 3 man/getBioclimParam.Rd | 2 man/getWoodDensity.Rd | 2 man/param_4.Rd | 2 man/param_7.Rd | 2 man/retrieveH.Rd | 2 vignettes |only 23 files changed, 594 insertions(+), 536 deletions(-)
Title: Extreme Gradient Boosting
Description: Extreme Gradient Boosting, which is an efficient implementation
of the gradient boosting framework from Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>.
This package is its R interface. The package includes efficient linear
model solver and tree learning algorithms. The package can automatically
do parallel computation on a single machine which could be more than 10
times faster than existing gradient boosting packages. It supports
various objective functions, including regression, classification and ranking.
The package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen <tianqi.tchen@gmail.com>, Tong He <hetong007@gmail.com>,
Michael Benesty <michael@benesty.fr>, Vadim Khotilovich <khotilovich@gmail.com>,
Yuan Tang <terrytangyuan@gmail.com>
Maintainer: Tong He <hetong007@gmail.com>
Diff between xgboost versions 0.6-3 dated 2016-12-31 and 0.6-4 dated 2017-01-05
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/xgb.plot.multi.trees.R | 9 ++++----- R/xgb.plot.tree.R | 9 ++++----- inst/doc/discoverYourData.html | 2 +- inst/doc/xgboost.pdf |binary inst/doc/xgboostPresentation.html | 10 +++++----- tests/testthat/test_basic.R | 11 ++++++++--- tests/testthat/test_helpers.R | 30 ++++++++++++++++-------------- 9 files changed, 51 insertions(+), 46 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial data, with bindings to GDAL, GEOS and Proj.4.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Michael Sumner [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 0.2-7 dated 2016-12-07 and 0.2-8 dated 2017-01-05
sf-0.2-7/sf/R/cast.R |only sf-0.2-7/sf/tests/Rplots.pdf |only sf-0.2-8/sf/DESCRIPTION | 17 + sf-0.2-8/sf/MD5 | 159 +++++++++--------- sf-0.2-8/sf/NAMESPACE | 26 ++ sf-0.2-8/sf/R/RcppExports.R | 28 ++- sf-0.2-8/sf/R/cast_sfc.R |only sf-0.2-8/sf/R/cast_sfg.R |only sf-0.2-8/sf/R/crs.R | 25 ++ sf-0.2-8/sf/R/db.R | 28 +-- sf-0.2-8/sf/R/geom.R | 291 ++++++++++++++++++++++++++++++--- sf-0.2-8/sf/R/graticule.R |only sf-0.2-8/sf/R/init.R | 17 + sf-0.2-8/sf/R/plot.R | 276 +++++++++++++++++++++++++++---- sf-0.2-8/sf/R/read.R | 166 ++++++++++++------ sf-0.2-8/sf/R/sf.R | 47 ++++- sf-0.2-8/sf/R/sfc.R | 42 ++-- sf-0.2-8/sf/R/sfg.R | 100 ++++++----- sf-0.2-8/sf/R/sp.R | 23 ++ sf-0.2-8/sf/R/tidy.R | 13 - sf-0.2-8/sf/R/transform.R | 13 + sf-0.2-8/sf/R/wkt.R | 44 ++-- sf-0.2-8/sf/configure | 285 ++++++++++++++++++++++++++++++++ sf-0.2-8/sf/configure.in | 156 +++++++++++++++++ sf-0.2-8/sf/demo/meuse_sf.R | 2 sf-0.2-8/sf/inst/doc/sf1.R | 20 +- sf-0.2-8/sf/inst/doc/sf1.Rmd | 20 +- sf-0.2-8/sf/inst/doc/sf1.html | 63 +++---- sf-0.2-8/sf/inst/doc/sf2.html | 16 - sf-0.2-8/sf/inst/doc/sf3.R | 8 sf-0.2-8/sf/inst/doc/sf3.Rmd | 18 -- sf-0.2-8/sf/inst/doc/sf3.html | 44 +--- sf-0.2-8/sf/man/dplyr.Rd | 2 sf-0.2-8/sf/man/extension_map.Rd |only sf-0.2-8/sf/man/geos.Rd | 60 ++++++ sf-0.2-8/sf/man/is_driver_available.Rd |only sf-0.2-8/sf/man/is_driver_can.Rd |only sf-0.2-8/sf/man/plot.Rd | 86 +++++++++ sf-0.2-8/sf/man/prefix_map.Rd |only sf-0.2-8/sf/man/sf.Rd | 4 sf-0.2-8/sf/man/sf_extSoftVersion.Rd |only sf-0.2-8/sf/man/sfc.Rd | 5 sf-0.2-8/sf/man/st.Rd | 7 sf-0.2-8/sf/man/st_cast.Rd | 64 +++++++ sf-0.2-8/sf/man/st_graticule.Rd |only sf-0.2-8/sf/man/st_interpolate_aw.Rd |only sf-0.2-8/sf/man/st_makegrid.Rd |only sf-0.2-8/sf/man/st_read.Rd | 7 sf-0.2-8/sf/man/st_transform.Rd | 7 sf-0.2-8/sf/man/st_write.Rd | 11 - sf-0.2-8/sf/man/st_write_db.Rd | 2 sf-0.2-8/sf/src/Makevars.win | 5 sf-0.2-8/sf/src/RcppExports.cpp | 78 +++++++- sf-0.2-8/sf/src/bbox.cpp | 1 sf-0.2-8/sf/src/gdal.cpp | 16 + sf-0.2-8/sf/src/gdal_geom.cpp | 64 +++---- sf-0.2-8/sf/src/gdal_read.cpp | 60 +++++- sf-0.2-8/sf/src/gdal_write.cpp | 13 + sf-0.2-8/sf/src/geos.cpp | 15 + sf-0.2-8/sf/src/proj.cpp |only sf-0.2-8/sf/src/wkb.cpp | 2 sf-0.2-8/sf/tests/cast.R |only sf-0.2-8/sf/tests/cast.Rout.save |only sf-0.2-8/sf/tests/crs.Rout.save | 17 - sf-0.2-8/sf/tests/dist.R |only sf-0.2-8/sf/tests/dist.Rout.save |only sf-0.2-8/sf/tests/dplyr.R | 49 +++-- sf-0.2-8/sf/tests/dplyr.Rout.save | 124 +++++++------- sf-0.2-8/sf/tests/gdal_geom.R | 2 sf-0.2-8/sf/tests/gdal_geom.Rout.save | 6 sf-0.2-8/sf/tests/geos.R | 34 +++ sf-0.2-8/sf/tests/geos.Rout.save | 114 ++++++++++-- sf-0.2-8/sf/tests/graticule.R |only sf-0.2-8/sf/tests/graticule.Rout.save |only sf-0.2-8/sf/tests/pg.R | 5 sf-0.2-8/sf/tests/pg.Rout.save | 7 sf-0.2-8/sf/tests/plot.R | 10 + sf-0.2-8/sf/tests/plot.Rout.save | 23 ++ sf-0.2-8/sf/tests/sfc.R | 14 + sf-0.2-8/sf/tests/sfc.Rout.save | 182 +++++++++++++------- sf-0.2-8/sf/tests/testthat/test_crs.R | 28 ++- sf-0.2-8/sf/tests/testthat/test_gdal.R | 22 +- sf-0.2-8/sf/tests/testthat/test_geos.R | 36 +++- sf-0.2-8/sf/tests/testthat/test_read.R | 136 +++++++++++++-- sf-0.2-8/sf/tests/testthat/test_sf.R | 2 sf-0.2-8/sf/tests/testthat/test_sfc.R | 4 sf-0.2-8/sf/tests/testthat/test_tidy.R |only sf-0.2-8/sf/tests/testthat/test_tm.R | 10 - sf-0.2-8/sf/tests/testthat/test_wkt.R | 9 - sf-0.2-8/sf/vignettes/sf1.Rmd | 20 +- sf-0.2-8/sf/vignettes/sf3.Rmd | 18 -- 91 files changed, 2525 insertions(+), 803 deletions(-)
More information about Plasmidprofiler at CRAN
Permanent link
Title: Partitioning Using Deletion, Substitution, and Addition Moves
Description: A novel tool for generating a piecewise
constant estimation list of increasingly complex predictors
based on an intensive and comprehensive search over the entire
covariate space.
Author: Annette Molinaro <annette.molinaro@ucsf.edu>,
Adam Olshen <olshena@biostat.ucsf.edu>,
Karen Lostritto <karen.lostritto@yale.edu>,
Gregory Ryslik <gregory.ryslik@yale.edu>,
Steve Weston <stephen.weston@yale.com>
Maintainer: Annette Molinaro <annette.molinaro@ucsf.edu>
Diff between partDSA versions 0.9.10 dated 2015-02-22 and 0.9.14 dated 2017-01-05
DESCRIPTION | 6 +-- MD5 | 20 +++++----- NAMESPACE | 3 + R/control.R | 11 ++++- R/cv_boosting.R |only R/main-Leafy.R | 91 +++++++++++++++++++++++++++++++++++++----------- R/main.R | 74 +++++++++++++++++---------------------- R/run_boosting.R |only build/vignette.rds |binary inst/doc/partDSAvig.pdf |binary inst/doc/survival.pdf |binary man/partDSA.Rd | 16 +++++--- 12 files changed, 140 insertions(+), 81 deletions(-)
Title: Multivariate Regression with Covariance Estimation
Description: Compute and select tuning parameters for the MRCE estimator proposed by Rothman, Levina, and Zhu (2010) <doi:10.1198/jcgs.2010.09188>. This estimator fits the multiple output linear regression model with a sparse estimator of the error precision matrix and a sparse estimator of the regression coefficient matrix.
Author: Adam J. Rothman
Maintainer: Adam J. Rothman <arothman@umn.edu>
Diff between MRCE versions 2.0 dated 2013-06-10 and 2.1 dated 2017-01-05
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- NAMESPACE | 1 + 3 files changed, 9 insertions(+), 8 deletions(-)
Title: Tools to Visualize, Manipulate, and Summarize MCMC Output
Description: Performs key functions for MCMC analysis using minimal code - visualizes, manipulates, and summarizes MCMC output. Functions support simple and straightforward subsetting of model parameters within the calls, and produce presentable and 'publication-ready' output. MCMC output may be derived from Bayesian model output fit with JAGS, Stan, or other MCMC samplers.
Author: Casey Youngflesh
Maintainer: Casey Youngflesh <caseyyoungflesh@gmail.com>
Diff between MCMCvis versions 0.6.3 dated 2016-10-06 and 0.7.0 dated 2017-01-05
DESCRIPTION | 11 - MD5 | 33 ++-- NEWS.md |only R/MCMCchains.R | 2 R/MCMCplot.R | 330 +++++++++++++++++++++++++---------------- R/MCMCsummary.R | 100 +++++------- R/MCMCtrace.R | 27 ++- R/MCMCvis.R | 61 +++---- build/vignette.rds |binary inst/doc/MCMCvis.R | 12 + inst/doc/MCMCvis.Rmd | 395 +++++++++++++++++++++++++------------------------- inst/doc/MCMCvis.html | 32 ++-- man/MCMCchains.Rd | 2 man/MCMCplot.Rd | 96 ++++-------- man/MCMCsummary.Rd | 7 man/MCMCtrace.Rd | 10 - man/MCMCvis.Rd | 7 vignettes/MCMCvis.Rmd | 395 +++++++++++++++++++++++++------------------------- 18 files changed, 805 insertions(+), 715 deletions(-)
Title: Read HYDRA Rainfall Data
Description: Read data from the City of Portland's 'HYDRA' <http://or.water.usgs.gov/precip/> rainfall datasets within R.
Author: Oliver Keyes
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between hail versions 0.1.0 dated 2015-12-15 and 0.1.1 dated 2017-01-05
hail-0.1.0/hail/data/hydra_data.RData |only hail-0.1.1/hail/DESCRIPTION | 12 +++++++----- hail-0.1.1/hail/LICENSE | 2 +- hail-0.1.1/hail/MD5 | 18 +++++++++--------- hail-0.1.1/hail/NAMESPACE | 2 +- hail-0.1.1/hail/NEWS.md | 2 ++ hail-0.1.1/hail/README.md | 2 +- hail-0.1.1/hail/data/hydra_data.rda |only hail-0.1.1/hail/man/hail.Rd | 2 +- hail-0.1.1/hail/man/hail_hydra.Rd | 3 ++- hail-0.1.1/hail/man/hydra_data.Rd | 2 +- 11 files changed, 25 insertions(+), 20 deletions(-)
Title: Wrapper for the Gnu Scientific Library
Description:
An R wrapper for the special functions and quasi random number
generators of the Gnu Scientific Library
(http://www.gnu.org/software/gsl/). See gsl-package.Rd for details of
overall package organization, and Misc.Rd for some functions that are
widely used in the package, and some tips on installation.
Author: Robin K. S. Hankin; qrng functions by Duncan Murdoch and
multimin by Andrew Clausen
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between gsl versions 1.9-10.2 dated 2016-12-15 and 1.9-10.3 dated 2017-01-05
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- build/vignette.rds |binary 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Fixed Sequence Multiple Testing Procedures
Description: Several generalized / directional Fixed Sequence Multiple Testing
Procedures (FSMTPs) are developed for testing a sequence of pre-ordered
hypotheses while controlling the FWER, FDR and Directional Error (mdFWER).
All three FWER controlling generalized FSMTPs are designed under arbitrary
dependence, which allow any number of acceptances. Two FDR controlling
generalized FSMTPs are respectively designed under arbitrary dependence and
independence, which allow more but a given number of acceptances. Two mdFWER
controlling directional FSMTPs are respectively designed under arbitrary
dependence and independence, which can also make directional decisions based
on the signs of the test statistics. The main functions for each proposed
generalized / directional FSMTPs are designed to calculate adjusted p-values
and critical values, respectively. For users' convenience, the functions also
provide the output option for printing decision rules.
Author: Yalin Zhu, Wenge Guo
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>
Diff between FixSeqMTP versions 0.1.1 dated 2016-12-09 and 0.1.2 dated 2017-01-05
DESCRIPTION | 28 ++++++++++++++++------------ MD5 | 17 +++++++++++------ NAMESPACE | 4 ++++ R/FSFDR.R | 8 ++++---- R/FSFWER.R | 4 ++-- R/FSmdFWER.R |only R/FixSeqMTP.R | 15 +++++++++++++-- man/FSmdFWER.arbidept.cv.Rd |only man/FSmdFWER.arbidept.p.adjust.Rd |only man/FSmdFWER.indept.cv.Rd |only man/FSmdFWER.indept.p.adjust.Rd |only man/FixSeqMTP.Rd | 16 ++++++++++++++-- 12 files changed, 64 insertions(+), 28 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre],
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>
Diff between ergm versions 3.6.0 dated 2016-03-25 and 3.6.1 dated 2017-01-05
ergm-3.6.0/ergm/tests/Rplots.pdf |only ergm-3.6.1/ergm/DESCRIPTION | 10 ergm-3.6.1/ergm/LICENSE | 2 ergm-3.6.1/ergm/MD5 | 397 ++++++++-------- ergm-3.6.1/ergm/R/InitConstraint.R | 2 ergm-3.6.1/ergm/R/InitErgmTerm.R | 5 ergm-3.6.1/ergm/R/InitErgmTerm.coincidence.R | 2 ergm-3.6.1/ergm/R/InitErgmTerm.transitiveties.R | 2 ergm-3.6.1/ergm/R/InitErgmTermcondegmple.R | 2 ergm-3.6.1/ergm/R/InitMHP.R | 2 ergm-3.6.1/ergm/R/InitMHP.blockdiag.R | 2 ergm-3.6.1/ergm/R/InitReferences.R | 2 ergm-3.6.1/ergm/R/InitWtErgmTerm.R | 5 ergm-3.6.1/ergm/R/InitWtMHP.R | 2 ergm-3.6.1/ergm/R/MHproposal.R | 2 ergm-3.6.1/ergm/R/WtReferences.R | 2 ergm-3.6.1/ergm/R/anova.ergm.R | 2 ergm-3.6.1/ergm/R/anova.ergmlist.R | 2 ergm-3.6.1/ergm/R/as.network.numeric.R | 2 ergm-3.6.1/ergm/R/check.ErgmTerm.R | 2 ergm-3.6.1/ergm/R/coef.ergm.R | 6 ergm-3.6.1/ergm/R/control.ergm.R | 2 ergm-3.6.1/ergm/R/control.ergm.bridge.R | 2 ergm-3.6.1/ergm/R/control.gof.R | 2 ergm-3.6.1/ergm/R/control.logLik.ergm.R | 2 ergm-3.6.1/ergm/R/control.san.R | 2 ergm-3.6.1/ergm/R/control.simulate.R | 2 ergm-3.6.1/ergm/R/delete.isolates.R | 2 ergm-3.6.1/ergm/R/ergm.Cprepare.R | 2 ergm-3.6.1/ergm/R/ergm.MCMCse.R | 2 ergm-3.6.1/ergm/R/ergm.MCMCse.lognormal.R | 2 ergm-3.6.1/ergm/R/ergm.MCMLE.R | 2 ergm-3.6.1/ergm/R/ergm.R | 2 ergm-3.6.1/ergm/R/ergm.allstats.R | 2 ergm-3.6.1/ergm/R/ergm.bounddeg.R | 2 ergm-3.6.1/ergm/R/ergm.bridge.R | 6 ergm-3.6.1/ergm/R/ergm.check.R | 2 ergm-3.6.1/ergm/R/ergm.coefficient.degeneracy.R | 2 ergm-3.6.1/ergm/R/ergm.curved.statsmatrix.R | 2 ergm-3.6.1/ergm/R/ergm.degeneracy.R | 2 ergm-3.6.1/ergm/R/ergm.design.R | 2 ergm-3.6.1/ergm/R/ergm.estimate.R | 2 ergm-3.6.1/ergm/R/ergm.eta.R | 2 ergm-3.6.1/ergm/R/ergm.etagrad.R | 2 ergm-3.6.1/ergm/R/ergm.etagradmult.R | 2 ergm-3.6.1/ergm/R/ergm.etamap.R | 2 ergm-3.6.1/ergm/R/ergm.geodistn.R | 2 ergm-3.6.1/ergm/R/ergm.getMCMCsample.R | 2 ergm-3.6.1/ergm/R/ergm.getglobalstats.R | 2 ergm-3.6.1/ergm/R/ergm.getmodel.R | 38 - ergm-3.6.1/ergm/R/ergm.getnetwork.R | 2 ergm-3.6.1/ergm/R/ergm.getterms.R | 2 ergm-3.6.1/ergm/R/ergm.initialfit.R | 2 ergm-3.6.1/ergm/R/ergm.llik.R | 2 ergm-3.6.1/ergm/R/ergm.llik.obs.R | 2 ergm-3.6.1/ergm/R/ergm.logitreg.R | 2 ergm-3.6.1/ergm/R/ergm.mahalanobis.R | 2 ergm-3.6.1/ergm/R/ergm.mapl.R | 2 ergm-3.6.1/ergm/R/ergm.maple.R | 2 ergm-3.6.1/ergm/R/ergm.model.utils.R | 2 ergm-3.6.1/ergm/R/ergm.mple.R | 2 ergm-3.6.1/ergm/R/ergm.phase12.R | 2 ergm-3.6.1/ergm/R/ergm.pl.R | 2 ergm-3.6.1/ergm/R/ergm.reviseinit.R | 2 ergm-3.6.1/ergm/R/ergm.robmon.R | 2 ergm-3.6.1/ergm/R/ergm.san.R | 2 ergm-3.6.1/ergm/R/ergm.sociality.R | 2 ergm-3.6.1/ergm/R/ergm.stepping.R | 2 ergm-3.6.1/ergm/R/ergm.stocapprox.R | 2 ergm-3.6.1/ergm/R/ergm.sufftoprob.R | 2 ergm-3.6.1/ergm/R/ergm.utility.R | 2 ergm-3.6.1/ergm/R/formula.utils.R | 2 ergm-3.6.1/ergm/R/gof.ergm.R | 2 ergm-3.6.1/ergm/R/is.curved.R | 2 ergm-3.6.1/ergm/R/is.dyad.independent.R | 2 ergm-3.6.1/ergm/R/is.inCH.R | 2 ergm-3.6.1/ergm/R/mcmc.diagnostics.ergm.R | 2 ergm-3.6.1/ergm/R/midarrow.R | 2 ergm-3.6.1/ergm/R/mvmodel.R | 2 ergm-3.6.1/ergm/R/network.update.R | 2 ergm-3.6.1/ergm/R/parallel.utils.R | 2 ergm-3.6.1/ergm/R/plot.ergm.R | 2 ergm-3.6.1/ergm/R/plot.network.ergm.R | 2 ergm-3.6.1/ergm/R/print.ergm.R | 2 ergm-3.6.1/ergm/R/print.network.list.R | 2 ergm-3.6.1/ergm/R/print.summary.ergm.R | 2 ergm-3.6.1/ergm/R/robust.inverse.R | 2 ergm-3.6.1/ergm/R/simulate.ergm.R | 2 ergm-3.6.1/ergm/R/summary.ergm.R | 2 ergm-3.6.1/ergm/R/summary.network.list.R | 2 ergm-3.6.1/ergm/R/summary.statistics.network.R | 2 ergm-3.6.1/ergm/R/wtd.median.R | 2 ergm-3.6.1/ergm/R/zzz.R | 4 ergm-3.6.1/ergm/build/partial.rdb |only ergm-3.6.1/ergm/build/vignette.rds |binary ergm-3.6.1/ergm/data/samplk.RData |binary ergm-3.6.1/ergm/data/sampson.RData |binary ergm-3.6.1/ergm/inst/CITATION | 2 ergm-3.6.1/ergm/inst/NEWS.Rd | 89 ++- ergm-3.6.1/ergm/inst/doc/ergm.Rnw | 32 - ergm-3.6.1/ergm/inst/doc/ergm.pdf |binary ergm-3.6.1/ergm/inst/include/MHproposal.h | 10 ergm-3.6.1/ergm/inst/include/wtMHproposal.h | 1 ergm-3.6.1/ergm/man/Getting.Started.Rd | 6 ergm-3.6.1/ergm/man/MHproposal.Rd | 2 ergm-3.6.1/ergm/man/anova.ergm.Rd | 2 ergm-3.6.1/ergm/man/approx.hotelling.diff.test.Rd | 2 ergm-3.6.1/ergm/man/as.network.numeric.Rd | 2 ergm-3.6.1/ergm/man/coef.ergm.Rd | 2 ergm-3.6.1/ergm/man/coef.length.model.Rd | 2 ergm-3.6.1/ergm/man/control.ergm.Rd | 2 ergm-3.6.1/ergm/man/control.ergm.bridge.Rd | 2 ergm-3.6.1/ergm/man/control.gof.Rd | 2 ergm-3.6.1/ergm/man/control.logLik.ergm.Rd | 2 ergm-3.6.1/ergm/man/control.san.Rd | 2 ergm-3.6.1/ergm/man/control.simulate.ergm.Rd | 2 ergm-3.6.1/ergm/man/ecoli.Rd | 2 ergm-3.6.1/ergm/man/enformulate.curved.Rd | 2 ergm-3.6.1/ergm/man/ergm-MetropolisHastingsProposals.Rd | 2 ergm-3.6.1/ergm/man/ergm-constraints.Rd | 4 ergm-3.6.1/ergm/man/ergm-internal.Rd | 2 ergm-3.6.1/ergm/man/ergm-package.Rd | 8 ergm-3.6.1/ergm/man/ergm-parallel.Rd | 2 ergm-3.6.1/ergm/man/ergm-references.Rd | 4 ergm-3.6.1/ergm/man/ergm-terms.Rd | 32 - ergm-3.6.1/ergm/man/ergm.ConstraintImplication.Rd | 2 ergm-3.6.1/ergm/man/ergm.MHP.table.Rd | 2 ergm-3.6.1/ergm/man/ergm.Rd | 10 ergm-3.6.1/ergm/man/ergm.allstats.Rd | 4 ergm-3.6.1/ergm/man/ergm.bridge.dindstart.llk.Rd | 2 ergm-3.6.1/ergm/man/ergm.bridge.llr.Rd | 2 ergm-3.6.1/ergm/man/ergm.exact.Rd | 4 ergm-3.6.1/ergm/man/ergm.init.methods.Rd | 2 ergm-3.6.1/ergm/man/eut-upgrade.Rd | 2 ergm-3.6.1/ergm/man/faux.desert.high.Rd | 2 ergm-3.6.1/ergm/man/faux.magnolia.high.Rd | 2 ergm-3.6.1/ergm/man/faux.mesa.high.Rd | 2 ergm-3.6.1/ergm/man/fix.curved.Rd | 2 ergm-3.6.1/ergm/man/flobusiness.Rd | 2 ergm-3.6.1/ergm/man/flomarriage.Rd | 2 ergm-3.6.1/ergm/man/florentine.Rd | 2 ergm-3.6.1/ergm/man/g4.Rd | 2 ergm-3.6.1/ergm/man/gof.ergm.Rd | 2 ergm-3.6.1/ergm/man/is.curved.Rd | 2 ergm-3.6.1/ergm/man/is.dyad.independent.Rd | 2 ergm-3.6.1/ergm/man/is.inCH.Rd | 2 ergm-3.6.1/ergm/man/kapferer.Rd | 2 ergm-3.6.1/ergm/man/lasttoggle.Rd | 2 ergm-3.6.1/ergm/man/logLik.ergm.Rd | 2 ergm-3.6.1/ergm/man/mcmc.diagnostics.ergm.Rd | 2 ergm-3.6.1/ergm/man/molecule.Rd | 2 ergm-3.6.1/ergm/man/network.update.Rd | 2 ergm-3.6.1/ergm/man/plot.ergm.Rd | 2 ergm-3.6.1/ergm/man/plot.gofobject.Rd | 2 ergm-3.6.1/ergm/man/plot.network.ergm.Rd | 2 ergm-3.6.1/ergm/man/print.ergm.Rd | 2 ergm-3.6.1/ergm/man/samplk.Rd | 113 ++-- ergm-3.6.1/ergm/man/sampson.Rd | 114 +++- ergm-3.6.1/ergm/man/san.Rd | 2 ergm-3.6.1/ergm/man/simulate.ergm.Rd | 2 ergm-3.6.1/ergm/man/summary.ergm.Rd | 2 ergm-3.6.1/ergm/man/summary.gofobject.Rd | 2 ergm-3.6.1/ergm/man/summary.network.list.Rd | 2 ergm-3.6.1/ergm/man/summary.statistics.Rd | 2 ergm-3.6.1/ergm/man/vcov.ergm.Rd | 2 ergm-3.6.1/ergm/man/wtd.median.Rd | 2 ergm-3.6.1/ergm/src/CD.c | 18 ergm-3.6.1/ergm/src/MCMC.c | 14 ergm-3.6.1/ergm/src/MHproposal.h | 10 ergm-3.6.1/ergm/src/SAN.c | 32 - ergm-3.6.1/ergm/src/wtCD.c | 18 ergm-3.6.1/ergm/src/wtMCMC.c | 14 ergm-3.6.1/ergm/src/wtMHproposal.h | 1 ergm-3.6.1/ergm/src/wtSAN.c | 14 ergm-3.6.1/ergm/tests/constrain_blockdiag.R | 2 ergm-3.6.1/ergm/tests/constrain_degrees.R | 2 ergm-3.6.1/ergm/tests/constrain_observed.R | 2 ergm-3.6.1/ergm/tests/constraint_conflict.R | 2 ergm-3.6.1/ergm/tests/constraint_generalized.R | 2 ergm-3.6.1/ergm/tests/drop_tests.R | 2 ergm-3.6.1/ergm/tests/ergm.mixed.R | 2 ergm-3.6.1/ergm/tests/ergm.update.formula.R | 2 ergm-3.6.1/ergm/tests/ergmMPLEtest.R | 2 ergm-3.6.1/ergm/tests/estflo.R | 2 ergm-3.6.1/ergm/tests/fix.curved.R | 2 ergm-3.6.1/ergm/tests/flomarkov.R | 2 ergm-3.6.1/ergm/tests/hamming_termtests.R | 2 ergm-3.6.1/ergm/tests/misc_tests.R | 2 ergm-3.6.1/ergm/tests/miss_tests.R | 2 ergm-3.6.1/ergm/tests/mle_offset.R | 2 ergm-3.6.1/ergm/tests/mple_largenetwork.R | 2 ergm-3.6.1/ergm/tests/mple_offset.R | 2 ergm-3.6.1/ergm/tests/mple_target.stats.R | 2 ergm-3.6.1/ergm/tests/nodemix.R | 2 ergm-3.6.1/ergm/tests/nodrop.R | 2 ergm-3.6.1/ergm/tests/sampson.wrong.RData |only ergm-3.6.1/ergm/tests/termTests.directed.R | 2 ergm-3.6.1/ergm/tests/termTests.flexible.R | 2 ergm-3.6.1/ergm/vignettes/ergm-term-crossRef.Rmd | 2 ergm-3.6.1/ergm/vignettes/ergm-term-crossRef.html | 2 ergm-3.6.1/ergm/vignettes/ergm.Rnw | 32 - 201 files changed, 754 insertions(+), 627 deletions(-)
Title: Ensemble Partial Least Squares Regression
Description: An algorithmic framework for measuring feature importance,
outlier detection, model applicability domain evaluation,
and ensemble predictive modeling with (sparse)
partial least squares regressions.
Author: Nan Xiao [aut, cre],
Dongsheng Cao [aut],
Miaozhu Li [aut],
Qingsong Xu [aut]
Maintainer: Nan Xiao <me@nanx.me>
Diff between enpls versions 5.6 dated 2016-11-26 and 5.7 dated 2017-01-05
DESCRIPTION | 24 +++++++++----- LICENSE |only MD5 | 15 ++++---- NEWS.md | 86 +++++++++++++++++++++++++++------------------------ R/enpls-package.R | 12 ++----- README.md | 26 +++++++++++---- TODO | 1 inst/doc/enpls.html | 4 +- man/enpls-package.Rd | 12 ++----- 9 files changed, 100 insertions(+), 80 deletions(-)
Title: Test Coverage for Packages
Description: Track and report code coverage for your package and (optionally)
upload the results to a coverage service like 'Codecov' (http://codecov.io) or
'Coveralls' (http://coveralls.io). Code coverage is a measure of the amount of
code being exercised by a set of tests. It is an indirect measure of test
quality and completeness. This package is compatible with any testing
methodology or framework and tracks coverage of both R code and compiled
C/C++/FORTRAN code.
Author: Jim Hester [aut, cre],
Willem Ligtenberg [ctb],
Kirill Müller [ctb],
Henrik Bengtsson [ctb],
Steve Peak [ctb],
Kirill Sevastyanenko [ctb],
Jon Clayden [ctb],
Robert Flight [ctb],
Eric Brown [ctb],
Brodie Gaslam [ctb],
Will Beasley [ctb],
Robert Krzyzanowski [ctb],
Markus Wamser [ctb],
Karl Forner [ctb],
Gergely Daróczi [ctb],
Jouni Helske [ctb],
Kun Ren [ctb],
Jeroen Ooms [ctb],
Ken Williams [ctb],
Chris Campbell [ctb]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between covr versions 2.2.1 dated 2016-08-10 and 2.2.2 dated 2017-01-05
DESCRIPTION | 57 +++++- LICENSE | 2 MD5 | 97 +++++----- NAMESPACE | 5 NEWS.md | 5 R/codecov.R | 2 R/compiled.R | 4 R/covr.R | 71 ++++++- R/display_name.R | 5 R/parse_data.R | 7 R/report.R | 65 ------ R/trace_calls.R | 6 R/utils.R | 5 R/vectorized.R | 2 R/zzz.R | 14 - README.md | 2 build/vignette.rds |binary inst/doc/how_it_works.R | 59 +----- inst/doc/how_it_works.Rmd | 376 ++++++++++++++++++++-------------------- inst/doc/how_it_works.html | 260 ++++++++++++++------------- man/clear_counters.Rd | 1 man/code_coverage.Rd |only man/codecov.Rd | 1 man/count.Rd | 1 man/coveralls.Rd | 1 man/exclusions.Rd | 2 man/file_coverage.Rd | 1 man/function_coverage.Rd | 1 man/key.Rd | 1 man/new_counter.Rd | 1 man/package_coverage.Rd | 1 man/percent_coverage.Rd | 1 man/print.coverage.Rd | 1 man/report.Rd | 14 - man/system_check.Rd | 1 man/system_output.Rd | 1 man/tally_coverage.Rd | 1 man/to_cobertura.Rd | 1 man/trace_calls.Rd | 1 man/value.Rd | 1 man/zero_coverage.Rd | 1 tests/testthat/cobertura.xml | 10 - tests/testthat/corner-cases.Rds |binary tests/testthat/test-braceless.R | 81 ++++---- tests/testthat/test-cobertura.R | 10 - tests/testthat/test-codecov.R | 2 tests/testthat/test-report.R | 64 +----- tests/testthat/test-report.htm | 10 - tests/testthat/test-summary.R | 6 vignettes/how_it_works.Rmd | 312 ++++++++++++++++----------------- 50 files changed, 780 insertions(+), 793 deletions(-)
Title: Crowd Sourced System Benchmarks
Description: Benchmark your CPU and compare against other CPUs. Also provides
functions for obtaining system specifications, such as
RAM, CPU type, and R version.
Author: Colin Gillespie [aut, cre]
Maintainer: Colin Gillespie <csgillespie@gmail.com>
Diff between benchmarkme versions 0.3.0 dated 2016-06-25 and 0.4.0 dated 2017-01-05
benchmarkme-0.3.0/benchmarkme/R/get_blas_library.R |only benchmarkme-0.3.0/benchmarkme/R/shine.R |only benchmarkme-0.3.0/benchmarkme/inst/doc/b_benchmarks_description.Rmd |only benchmarkme-0.3.0/benchmarkme/inst/doc/b_benchmarks_description.html |only benchmarkme-0.3.0/benchmarkme/tests/testthat/Rplots.pdf |only benchmarkme-0.3.0/benchmarkme/vignettes/b_benchmarks_description.Rmd |only benchmarkme-0.4.0/benchmarkme/DESCRIPTION | 11 benchmarkme-0.4.0/benchmarkme/MD5 | 54 +-- benchmarkme-0.4.0/benchmarkme/NAMESPACE | 3 benchmarkme-0.4.0/benchmarkme/NEWS.md | 5 benchmarkme-0.4.0/benchmarkme/R/benchmark_io.R | 2 benchmarkme-0.4.0/benchmarkme/R/datatable.R | 8 benchmarkme-0.4.0/benchmarkme/R/get_linear_algebra.R |only benchmarkme-0.4.0/benchmarkme/R/get_ram.R | 32 -- benchmarkme-0.4.0/benchmarkme/R/plot_results.R | 6 benchmarkme-0.4.0/benchmarkme/R/upload_results.R | 38 +- benchmarkme-0.4.0/benchmarkme/R/zzz.r |only benchmarkme-0.4.0/benchmarkme/build/vignette.rds |binary benchmarkme-0.4.0/benchmarkme/inst/doc/a_introduction.R | 46 +- benchmarkme-0.4.0/benchmarkme/inst/doc/a_introduction.Rmd | 155 ++++++---- benchmarkme-0.4.0/benchmarkme/inst/doc/a_introduction.html | 130 +++++--- benchmarkme-0.4.0/benchmarkme/man/benchmark_io.Rd | 2 benchmarkme-0.4.0/benchmarkme/man/get_datatable.Rd | 2 benchmarkme-0.4.0/benchmarkme/man/get_linear_algebra.Rd | 6 benchmarkme-0.4.0/benchmarkme/man/get_ram.Rd | 2 benchmarkme-0.4.0/benchmarkme/man/rank_results.Rd | 2 benchmarkme-0.4.0/benchmarkme/man/reexports.Rd | 16 - benchmarkme-0.4.0/benchmarkme/man/upload_results.Rd | 14 benchmarkme-0.4.0/benchmarkme/tests/testthat.R | 2 benchmarkme-0.4.0/benchmarkme/tests/testthat/test-datatable.R | 2 benchmarkme-0.4.0/benchmarkme/tests/testthat/test-upload_results.R | 11 benchmarkme-0.4.0/benchmarkme/vignettes/a_introduction.Rmd | 155 ++++++---- 32 files changed, 413 insertions(+), 291 deletions(-)