Title: Utilities for Generating SQL Queries from Model Objects
Description: Provides utilities for generating SQL queries (particularly CREATE
TABLE statements) from R model objects. The most important use case is
generating SQL to score a generalized linear model or related model
represented as an R object, in which case the package handles parsing
formula operators and including the model's response function.
Author: William Brannon [aut, cre]
Maintainer: William Brannon <wwbrannon@email.wm.edu>
Diff between sqlscore versions 0.1.0 dated 2016-12-11 and 0.1.1 dated 2017-01-07
DESCRIPTION | 18 ++--- MD5 | 23 +++--- NEWS.md | 9 ++ R/extract_coef.R | 34 ++++++++- R/linpred.R | 7 + R/score_expression.R | 58 ++++++++++++++-- R/utils.R |only README.md | 30 ++++---- man/linpred.Rd | 8 ++ man/score_expression.Rd | 8 ++ tests/testthat/helper-functions.R | 16 ++++ tests/testthat/test-extract_coef.R | 6 + tests/testthat/test-score_expression.R | 117 ++++++++++++++++++++++----------- 13 files changed, 249 insertions(+), 85 deletions(-)
Title: Automated Method for Verbal Autopsy
Description: Implements multiple existing open-source algorithms for coding cause of death from verbal autopsies. It also provides tools for data manipulation tasks commonly used in Verbal Autopsy analysis and implements easy graphical visualization of individual and population level statistics.
Author: Zehang Li, Tyler McCormick, Sam Clark
Maintainer: Zehang Li <lizehang@uw.edu>
Diff between openVA versions 1.0.2 dated 2016-11-19 and 1.0.3 dated 2017-01-07
DESCRIPTION | 10 ++++----- MD5 | 14 +++++++----- NAMESPACE | 1 R/CSMF.r | 51 ++++++++++++++++++++++++++++++++++++++++++++++- R/ConvertData.r | 23 +++++++++++---------- R/VAmain.r | 19 +++++++++++++---- inst |only man/ConvertData.phmrc.Rd | 12 +++++------ man/getCSMF_accuracy.Rd |only 9 files changed, 97 insertions(+), 33 deletions(-)
Title: Manipulate and Visualize VCF Data
Description: Facilitates easy manipulation of variant call format (VCF) data.
Functions are provided to rapidly read from and write to VCF files.
Once VCF data is read into R a parser function extracts matrices of data.
This information can then be used for quality control or other purposes.
Additional functions provide visualization of genomic data.
Once processing is complete data may be written to a VCF file (*.vcf.gz).
It also may be converted into other popular R objects (e.g., genlight, DNAbin).
VcfR provides a link between VCF data and familiar R software.
Author: Brian J. Knaus [cre, aut],
Niklaus J. Grunwald [aut],
Eric C. Anderson [ctb],
David J. Winter [ctb],
Zhian N. Kamvar [ctb]
Maintainer: Brian J. Knaus <briank.lists@gmail.com>
Diff between vcfR versions 1.3.0 dated 2016-12-08 and 1.4.0 dated 2017-01-07
DESCRIPTION | 6 +- MD5 | 71 +++++++++++++------------ R/extract_gt.R | 14 +++- R/get_methods.R | 21 +++++-- build/vignette.rds |binary inst/doc/converting_data.html | 26 ++++----- inst/doc/filtering_data.html | 12 ++-- inst/doc/intro_to_vcfR.Rmd | 110 +++++++++++++++----------------------- inst/doc/intro_to_vcfR.html | 60 +++++++++------------ inst/doc/ranking_data.html | 16 ++--- inst/doc/sequence_coverage.html | 6 +- inst/doc/vcf_data.R | 18 +++--- inst/doc/vcf_data.Rmd | 103 ++++++++++++++++++++++-------------- inst/doc/vcf_data.html | 113 +++++++++++++++++++++++++--------------- inst/doc/visualization_1.html | 12 ++-- inst/doc/visualization_2.html | 4 - inst/doc/workflow.Rmd |only inst/doc/workflow.html |only man/extract_gt.Rd | 2 man/getFIX.Rd | 4 + src/Makevars | 1 src/NM2winNM.cpp | 21 ++++--- src/RcppExports.cpp | 4 - src/ad_frequency.cpp | 4 - src/extractGT2NM.cpp | 42 +++++++------- src/freq_peak.cpp | 9 +-- src/gt_to_popsum.cpp | 24 ++++---- src/is_het.cpp | 2 src/masplit.cpp | 38 ++++++++++++- src/pair_sort.cpp | 3 - src/rank_variants.cpp | 12 ++-- src/seq_to_rects.cpp | 5 + src/vcfRCommon.cpp | 8 +- src/vcf_io.cpp | 32 ++++++----- tests/testthat.R | 10 +++ vignettes/intro_to_vcfR.Rmd | 110 +++++++++++++++----------------------- vignettes/vcf_data.Rmd | 103 ++++++++++++++++++++++-------------- vignettes/workflow.Rmd |only 38 files changed, 567 insertions(+), 459 deletions(-)
Title: Targeted Maximum Likelihood Estimation
Description: Targeted maximum likelihood estimation of point treatment effects (Targeted Maximum Likelihood Learning, The International Journal of biostatistics, 2(1), 2006. This version adds the tmleMSM() function to the package, for estimating the parameters of a marginal structural model for a binary point treatment effect. The tmle() function calculates the adjusted marginal difference in mean outcome associated with a binary point treatment, for continuous or binary outcomes. Relative risk and odds ratio estimates are also reported for binary outcomes. Missingness in the outcome is allowed, but not in treatment assignment or baseline covariate values. Effect estimation stratified by a binary mediating variable is also available. The population mean is calculated when there is missingness, and no variation in the treatment assignment. An ID argument can be used to identify repeated measures. Default settings call 'SuperLearner' to estimate the Q and g portions of the likelihood, unless values or a user-supplied regression function are passed in as arguments.
Author: Susan Gruber [aut, cre],
Mark van der Laan [aut]
Maintainer: Susan Gruber <sgruber@cal.berkeley.edu>
Diff between tmle versions 1.2.0-4 dated 2014-03-09 and 1.2.0-5 dated 2017-01-07
tmle-1.2.0-4/tmle/man/SL.glm.interaction.Rd |only tmle-1.2.0-5/tmle/DESCRIPTION | 23 +++--- tmle-1.2.0-5/tmle/MD5 | 31 ++++----- tmle-1.2.0-5/tmle/NAMESPACE | 16 ++++ tmle-1.2.0-5/tmle/NEWS | 6 + tmle-1.2.0-5/tmle/R/tmle.R | 95 ++++++++++++---------------- tmle-1.2.0-5/tmle/R/zzz.R | 2 tmle-1.2.0-5/tmle/man/calcParameters.Rd | 2 tmle-1.2.0-5/tmle/man/calcSigma.Rd | 2 tmle-1.2.0-5/tmle/man/estimateG.Rd | 5 - tmle-1.2.0-5/tmle/man/estimateQ.Rd | 5 - tmle-1.2.0-5/tmle/man/summary.tmle.Rd | 2 tmle-1.2.0-5/tmle/man/summary.tmleMSM.Rd | 2 tmle-1.2.0-5/tmle/man/tmle-package.Rd | 8 +- tmle-1.2.0-5/tmle/man/tmle.Rd | 5 - tmle-1.2.0-5/tmle/man/tmleMSM.Rd | 5 - tmle-1.2.0-5/tmle/man/tmleNews.Rd | 2 17 files changed, 112 insertions(+), 99 deletions(-)
Title: Advanced Forest Plot Using 'grid' Graphics
Description: A forest plot that allows for
multiple confidence intervals per row,
custom fonts for each text element,
custom confidence intervals,
text mixed with expressions, and more.
The aim is to extend the use of forest plots beyond meta-analyses.
This is a more general version of the original 'rmeta' package's forestplot()
function and relies heavily on the 'grid' package.
Author: Max Gordon [aut, cre],
Thomas Lumley [aut, ctb]
Maintainer: Max Gordon <max@gforge.se>
Diff between forestplot versions 1.6 dated 2016-11-14 and 1.7 dated 2017-01-07
DESCRIPTION | 12 ++++++------ MD5 | 15 ++++++++------- NAMESPACE | 4 ++++ NEWS | 6 ++++++ R/forestplot.R | 11 ++++++++--- R/private.R | 24 +++++++++++++++++++++++- inst/doc/forestplot.html | 38 +++++++++++++++++++------------------- tests/testthat/test-inputs.R |only tests/testthat/test-prGparMerge.R | 4 ++++ 9 files changed, 78 insertions(+), 36 deletions(-)
Title: Create Waffle Chart Visualizations in R
Description: Square pie charts (a.k.a. waffle charts) can be used
to communicate parts of a whole for categorical quantities. To emulate the
percentage view of a pie chart, a 10x10 grid should be used with each square
representing 1% of the total. Modern uses of waffle charts do not
necessarily adhere to this rule and can be created with a grid of any
rectangular shape. Best practices suggest keeping the number of categories
small, just as should be done when creating pie charts. Tools are provided
to create waffle charts as well as stitch them together, and to use glyphs
for making isotype pictograms.
Author: Bob Rudis [aut, cre],
Dave Gandy [aut] (Font Awesome)
Maintainer: Bob Rudis <bob@rud.is>
Diff between waffle versions 0.6.0 dated 2016-09-18 and 0.7.0 dated 2017-01-07
DESCRIPTION | 17 +++++++----- MD5 | 17 +++++++----- NEWS.md |only R/aaa.r |only R/iron.R | 67 ----------------------------------------------- R/utils.r |only R/waffle-package.R | 4 -- R/waffle.R | 43 ++++++++++++++++-------------- README.md | 75 ++++++++++++++++++++++++++--------------------------- man/iron.Rd | 2 - man/waffle.Rd | 8 +++-- 11 files changed, 91 insertions(+), 142 deletions(-)
Title: 'Lex' and 'Yacc'
Description: R implementation of the common parsing tools 'lex' and 'yacc'.
Author: Marek Jagielski [aut, cre, cph], David M. Beazley [aut, cph], Yasutaka Tanaka [ctb]
Maintainer: Marek Jagielski <marek.jagielski@gmail.com>
Diff between rly versions 1.4.0 dated 2017-01-06 and 1.4.1 dated 2017-01-07
DESCRIPTION | 16 +++++++++------- MD5 | 11 ++++++----- NAMESPACE | 5 +++-- NEWS.md | 8 ++++++++ R/logger.R | 1 + R/yacc.R | 2 +- tests/testthat/test.lex_precedence.R |only 7 files changed, 28 insertions(+), 15 deletions(-)
Title: An Image Processing Toolkit
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform and the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library.
Author: Lampros Mouselimis [aut, cre],
Sight Machine [cph] (findHOGFeatures function of the SimpleCV computer
vision platform),
Johannes Buchner [cph] (average_hash, dhash and phash functions of the
ImageHash python library)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between OpenImageR versions 1.0.2 dated 2016-07-11 and 1.0.3 dated 2017-01-07
DESCRIPTION | 8 MD5 | 108 +-- NAMESPACE | 74 +- NEWS.md | 5 R/RcppExports.R | 492 ++++++++-------- R/open_image_rscript.R | 9 README.md | 2 build/vignette.rds |binary inst/doc/The_OpenImageR_package.R | 734 +++++++++++------------ inst/doc/The_OpenImageR_package.html | 1072 +++++++++++++++++------------------ man/Augmentation.Rd | 170 ++--- man/HOG.Rd | 72 +- man/HOG_apply.Rd | 104 +-- man/List_2_Array.Rd | 68 +- man/MinMaxObject.Rd | 102 +-- man/NormalizeObject.Rd | 102 +-- man/ZCAwhiten.Rd | 76 +- man/average_hash.Rd | 82 +- man/convolution.Rd | 96 +-- man/cropImage.Rd | 86 +- man/crop_image_secondary.Rd | 26 man/delationErosion.Rd | 78 +- man/dhash.Rd | 78 +- man/down_sample_image.Rd | 84 +- man/edge_detection.Rd | 98 +-- man/flipImage.Rd | 64 +- man/func_chech_range.Rd | 26 man/func_transform.Rd | 26 man/gamma_correction.Rd | 70 +- man/gaussian_kernel.Rd | 26 man/hash_apply.Rd | 98 +-- man/imageShow.Rd | 56 - man/image_thresholding.Rd | 70 +- man/invariant_hash.Rd | 126 ++-- man/laplacian_kernels.Rd | 26 man/norm_range_gauss.Rd | 26 man/phash.Rd | 84 +- man/readImage.Rd | 60 - man/resizeImage.Rd | 78 +- man/rgb_2gray.Rd | 64 +- man/rotateFixed.Rd | 64 +- man/rotateImage.Rd | 76 +- man/runUI.Rd | 26 man/sec_gaus_bl.Rd | 26 man/sec_resiz_array.Rd | 26 man/switch_filter.Rd | 28 man/switch_hashing.Rd | 28 man/switch_invariant.Rd | 26 man/translation.Rd | 70 +- man/uniform_filter.Rd | 74 +- man/writeImage.Rd | 68 +- src/dilation_erosion_rgb2gray.cpp | 14 src/hog_features.cpp | 8 src/image_hashing.cpp | 88 +- src/utils.cpp | 10 55 files changed, 2694 insertions(+), 2664 deletions(-)
Title: Calculation of Minimum Averaged Mean Squared Error (MAMSE)
Weights
Description: Calculates the nonparametric adaptive MAMSE
weights for univariate, right-censored or multivariate data.
The MAMSE weights can be used in a weighted likelihood or to
define a mixture of empirical distribution functions. The package
includes functions for the MAMSE weighted Kaplan-Meier estimate
and for MAMSE weighted ROC curves.
Author: Jean-Francois Plante <jfplante@hec.ca>
Maintainer: Jean-Francois Plante <jfplante@hec.ca>
Diff between MAMSE versions 0.1-3 dated 2013-06-27 and 0.2-1 dated 2017-01-07
ChangeLog | 17 +++ DESCRIPTION | 17 +-- MD5 | 17 ++- NAMESPACE | 15 ++- R/MAMSE.R | 240 +++++++++++++++++++++++++++++++++++++++++---------- data |only man/MAMSE-package.Rd | 48 ++++++++-- man/MAMSE.Rd | 6 + man/Progesterone.Rd |only man/roc.Rd |only src/MAMSE.c | 32 ++++++ 11 files changed, 320 insertions(+), 72 deletions(-)
Title: A Lightweight and Flexible Web Framework
Description: A very flexible framework for building server side logic in R. The
framework is unopinionated when it comes to how HTTP requests and WebSocket
messages are handled and supports all levels of app complexity; from serving
static content to full-blown dynamic web-apps. Fiery does not hold your hand
as much as e.g. the shiny package does, but instead sets you free to create
your web app the way you want.
Author: Thomas Lin Pedersen [aut, cre]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between fiery versions 0.2.1 dated 2016-07-04 and 0.2.2 dated 2017-01-07
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/Fire.R | 2 +- README.md | 2 +- tests/testthat/test-Fire.R | 20 +++++++++++--------- tests/testthat/test-fake_request.R | 1 + 7 files changed, 30 insertions(+), 22 deletions(-)
Title: Continuous Time Structural Equation Modelling
Description: A multivariate continuous (and discrete) time dynamic modelling
package for panel and time series data, using linear stochastic differential
equations. Contains a faster frequentist set of functions using OpenMx for
single subject and mixed-effects (random intercepts only) structural
equation models, or a hierarchical Bayesian implementation using Stan that
allows for random effects over all model parameters. Allows for modelling of
multiple noisy measurements of multiple stochastic processes, time varying
input / event covariates, and time invariant covariates used to predict the
parameters.
Author: Charles Driver [aut, cre, cph],
Manuel Voelkle [aut, cph],
Han Oud [aut, cph]
Maintainer: Charles Driver <driver@mpib-berlin.mpg.de>
Diff between ctsem versions 2.1.0 dated 2016-12-22 and 2.1.1 dated 2017-01-07
ctsem-2.1.0/ctsem/R/ctPSMfit.R |only ctsem-2.1.0/ctsem/man/ctPSMfit.Rd |only ctsem-2.1.0/ctsem/vignettes/ctsem-blx.bib |only ctsem-2.1.0/ctsem/vignettes/hierarchical-concordance.tex |only ctsem-2.1.0/ctsem/vignettes/tmp-pdfcrop-6188.tex |only ctsem-2.1.1/ctsem/DESCRIPTION | 8 +-- ctsem-2.1.1/ctsem/MD5 | 35 ++++++-------- ctsem-2.1.1/ctsem/NAMESPACE | 1 ctsem-2.1.1/ctsem/NEWS | 20 ++++++-- ctsem-2.1.1/ctsem/R/ctFit.R | 29 ++++++----- ctsem-2.1.1/ctsem/R/ctKalman.R | 4 - ctsem-2.1.1/ctsem/R/ctRefineTo.R | 4 - ctsem-2.1.1/ctsem/R/ctStanFit.R | 23 ++++++--- ctsem-2.1.1/ctsem/R/plot.ctsemFit.R | 17 ++++-- ctsem-2.1.1/ctsem/inst/doc/ctsem.R | 33 ++++--------- ctsem-2.1.1/ctsem/inst/doc/ctsem.pdf |binary ctsem-2.1.1/ctsem/inst/doc/ctsem.rnw | 37 +++++---------- ctsem-2.1.1/ctsem/inst/doc/hierarchical.pdf |binary ctsem-2.1.1/ctsem/man/ctPlot.Rd | 5 +- ctsem-2.1.1/ctsem/man/ctStanFit.Rd | 9 ++- ctsem-2.1.1/ctsem/vignettes/ctsem.rnw | 37 +++++---------- 21 files changed, 129 insertions(+), 133 deletions(-)
Title: Parse XML
Description: Work with XML files using a simple, consistent interface. Built on
top of the 'libxml2' C library.
Author: Hadley Wickham [aut],
James Hester [aut, cre],
Jeroen Ooms [aut],
RStudio [cph],
R Foundation [ctb] (Copy of R-project homepage cached as example)
Maintainer: James Hester <james.hester@rstudio.com>
Diff between xml2 versions 1.0.0 dated 2016-06-24 and 1.1.0 dated 2017-01-07
xml2-1.0.0/xml2/man/xml_name-set.Rd |only xml2-1.0.0/xml2/src/xml2_types.h |only xml2-1.0.0/xml2/src/xml_push.cpp |only xml2-1.0.0/xml2/tests/testthat/test-as.list.R |only xml2-1.1.0/xml2/DESCRIPTION | 27 xml2-1.1.0/xml2/MD5 | 156 ++-- xml2-1.1.0/xml2/NAMESPACE | 61 + xml2-1.1.0/xml2/NEWS.md | 60 + xml2-1.1.0/xml2/R/RcppExports.R | 98 ++- xml2-1.1.0/xml2/R/as_list.R | 51 + xml2-1.1.0/xml2/R/as_xml_document.R |only xml2-1.1.0/xml2/R/classes.R | 145 ++++ xml2-1.1.0/xml2/R/paths.R | 12 xml2-1.1.0/xml2/R/utils.R | 36 + xml2-1.1.0/xml2/R/xml_attr.R | 76 ++ xml2-1.1.0/xml2/R/xml_children.R | 10 xml2-1.1.0/xml2/R/xml_find.R | 2 xml2-1.1.0/xml2/R/xml_modify.R | 175 ++++- xml2-1.1.0/xml2/R/xml_name.R | 35 + xml2-1.1.0/xml2/R/xml_namespaces.R | 12 xml2-1.1.0/xml2/R/xml_parse.R | 82 -- xml2-1.1.0/xml2/R/xml_path.R | 1 xml2-1.1.0/xml2/R/xml_schema.R |only xml2-1.1.0/xml2/R/xml_serialize.R |only xml2-1.1.0/xml2/R/xml_text.R | 25 xml2-1.1.0/xml2/R/xml_url.R | 5 xml2-1.1.0/xml2/R/xml_write.R | 100 ++- xml2-1.1.0/xml2/README.md | 1 xml2-1.1.0/xml2/build/vignette.rds |binary xml2-1.1.0/xml2/build/xml2.pdf |only xml2-1.1.0/xml2/cleanup |only xml2-1.1.0/xml2/inst/doc/modification.R | 23 xml2-1.1.0/xml2/inst/doc/modification.Rmd | 72 +- xml2-1.1.0/xml2/inst/doc/modification.html | 237 ++++--- xml2-1.1.0/xml2/inst/extdata/order-doc.xml |only xml2-1.1.0/xml2/inst/extdata/order-schema.xml |only xml2-1.1.0/xml2/inst/include |only xml2-1.1.0/xml2/man/as_list.Rd | 11 xml2-1.1.0/xml2/man/as_xml_document.Rd |only xml2-1.1.0/xml2/man/read_xml.Rd | 34 - xml2-1.1.0/xml2/man/url_absolute.Rd | 1 xml2-1.1.0/xml2/man/url_escape.Rd | 1 xml2-1.1.0/xml2/man/url_parse.Rd | 1 xml2-1.1.0/xml2/man/write_xml.Rd | 35 - xml2-1.1.0/xml2/man/xml_attr.Rd | 32 - xml2-1.1.0/xml2/man/xml_cdata.Rd |only xml2-1.1.0/xml2/man/xml_children.Rd | 12 xml2-1.1.0/xml2/man/xml_comment.Rd |only xml2-1.1.0/xml2/man/xml_dtd.Rd |only xml2-1.1.0/xml2/man/xml_find_all.Rd | 9 xml2-1.1.0/xml2/man/xml_missing.Rd |only xml2-1.1.0/xml2/man/xml_name.Rd | 14 xml2-1.1.0/xml2/man/xml_new_document.Rd | 29 xml2-1.1.0/xml2/man/xml_ns.Rd | 1 xml2-1.1.0/xml2/man/xml_ns_strip.Rd | 1 xml2-1.1.0/xml2/man/xml_path.Rd | 1 xml2-1.1.0/xml2/man/xml_replace.Rd | 24 xml2-1.1.0/xml2/man/xml_serialize.Rd |only xml2-1.1.0/xml2/man/xml_set_namespace.Rd | 1 xml2-1.1.0/xml2/man/xml_structure.Rd | 3 xml2-1.1.0/xml2/man/xml_text.Rd | 8 xml2-1.1.0/xml2/man/xml_type.Rd | 1 xml2-1.1.0/xml2/man/xml_url.Rd | 1 xml2-1.1.0/xml2/man/xml_validate.Rd |only xml2-1.1.0/xml2/src/Makevars.in | 2 xml2-1.1.0/xml2/src/Makevars.win | 11 xml2-1.1.0/xml2/src/RcppExports.cpp | 568 ++++++++++-------- xml2-1.1.0/xml2/src/xml2_doc.cpp | 163 ++++- xml2-1.1.0/xml2/src/xml2_namespace.cpp | 8 xml2-1.1.0/xml2/src/xml2_node.cpp | 148 +--- xml2-1.1.0/xml2/src/xml2_output.cpp |only xml2-1.1.0/xml2/src/xml2_schema.cpp |only xml2-1.1.0/xml2/src/xml2_xpath.cpp | 4 xml2-1.1.0/xml2/tests/testthat/output |only xml2-1.1.0/xml2/tests/testthat/test-as_list.R |only xml2-1.1.0/xml2/tests/testthat/test-as_xml_document.R |only xml2-1.1.0/xml2/tests/testthat/test-cdata.R |only xml2-1.1.0/xml2/tests/testthat/test-comment.R |only xml2-1.1.0/xml2/tests/testthat/test-dtd.R |only xml2-1.1.0/xml2/tests/testthat/test-modify-xml.R | 101 +++ xml2-1.1.0/xml2/tests/testthat/test-null.R |only xml2-1.1.0/xml2/tests/testthat/test-print.R |only xml2-1.1.0/xml2/tests/testthat/test-read-xml.R | 21 xml2-1.1.0/xml2/tests/testthat/test-write_xml.R |only xml2-1.1.0/xml2/tests/testthat/test-xml_attrs.R | 64 ++ xml2-1.1.0/xml2/tests/testthat/test-xml_children.R | 14 xml2-1.1.0/xml2/tests/testthat/test-xml_find.R | 2 xml2-1.1.0/xml2/tests/testthat/test-xml_missing.R | 9 xml2-1.1.0/xml2/tests/testthat/test-xml_name.R | 28 xml2-1.1.0/xml2/tests/testthat/test-xml_nodeset.R |only xml2-1.1.0/xml2/tests/testthat/test-xml_schema.R |only xml2-1.1.0/xml2/tests/testthat/test-xml_serialize.R |only xml2-1.1.0/xml2/tests/testthat/test-xml_text.R | 39 - xml2-1.1.0/xml2/vignettes/modification.Rmd | 11 94 files changed, 2061 insertions(+), 854 deletions(-)
Title: Partial Dependence Plots
Description: A general framework for constructing partial dependence (i.e.,
marginal effect) plots from various types machine learning models in R.
Author: Brandon Greenwell [aut, cre]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Diff between pdp versions 0.3.0 dated 2016-12-18 and 0.4.0 dated 2017-01-07
DESCRIPTION | 11 +- MD5 | 28 +++-- NAMESPACE | 5 NEWS.md | 6 + R/getTrainingData.R |only R/partial.R | 237 +++++++++++++++++++++++++++++-------------- R/pdClassification.R | 209 +++++++++++++++++++++----------------- R/pdRegression.R | 86 +++++++++------ R/pdp.R | 1 R/plotPartial.R | 73 +++++++++++-- R/predGrid.R |only R/superType.R |only R/topPredictors.R |only R/utils.R | 245 ++------------------------------------------- README.md | 22 ++-- man/partial.Rd | 70 +++++++++--- man/topPredictors.Rd |only man/trellis.last.object.Rd |only 18 files changed, 503 insertions(+), 490 deletions(-)
Title: Functions for Smoothing with Infinite Order Flat-Top Kernels
Description: Density, spectral density, and regression estimation using infinite
order flat-top kernels.
Author: Timothy L. McMurry, Dimitris N. Politis
Maintainer: Timothy L. McMurry <tmcmurry@virginia.edu>
Diff between iosmooth versions 0.91 dated 2014-08-29 and 0.93 dated 2017-01-07
DESCRIPTION | 14 ++++++++------ MD5 | 10 +++++----- NAMESPACE | 8 +++++++- R/bwadap.R | 2 +- man/bwplot.numeric.Rd | 2 +- man/iospecden.Rd | 4 ++-- 6 files changed, 24 insertions(+), 16 deletions(-)
Title: Nonparametric Depth Functions for Multivariate Analysis
Description: Tools for depth functions methodology applied
to multivariate analysis. Besides allowing calculation
of depth values and depth-based location estimators, the package
includes functions or drawing contour plots and perspective plots
of depth functions. Euclidian and spherical depths are supported.
Author: Maxime Genest <maxime.genest@clevislauzon.qc.ca>, Jean-Claude
Masse <jcmasse@mat.ulaval.ca>, Jean-Francois Plante
<jfplante@hec.ca>.
Maintainer: Jean-Francois Plante <jfplante@hec.ca>
Diff between depth versions 2.1-0 dated 2016-12-16 and 2.1-1 dated 2017-01-07
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/scontour.R | 4 ++-- src/depth.f | 26 +++++++++++++++++++++++--- 5 files changed, 38 insertions(+), 13 deletions(-)