Title: Practical Numerical Math Functions
Description:
Provides a large number of functions from numerical analysis and
linear algebra, numerical optimization, differential equations,
time series, plus some well-known special mathematical functions.
Uses 'MATLAB' function names where appropriate to simplify porting.
Author: Hans Werner Borchers [aut, cre]
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between pracma versions 1.9.5 dated 2016-09-06 and 1.9.9 dated 2017-01-10
DESCRIPTION | 21 ++++----- MD5 | 42 ++++++++++-------- NEWS | 116 +++++++++++++++++++++++++++++--------------------- R/haversine.R |only R/humps.R | 8 +++ R/matlab.R | 13 +++-- R/nelder_mead.R | 9 ++- R/shooting.R |only R/sind.R |only R/whittaker.R | 28 +++++++----- data/brown72.rda |binary data/nile.rda |binary data/titanium.rda |binary man/bvp.Rd | 2 man/ezcontour.Rd | 2 man/gaussLaguerre.Rd | 2 man/haversine.Rd |only man/humps.Rd | 16 ++++-- man/interp2.Rd | 2 man/nelder_mead.Rd | 14 +++++- man/pracma-package.Rd | 11 ++-- man/savgol.Rd | 26 ----------- man/shooting.Rd |only man/sind.Rd |only man/whittaker.Rd | 47 +++++++++----------- 25 files changed, 196 insertions(+), 163 deletions(-)
Title: Graphic Presentation of Complex Genomic and Network Data
Analysis
Description: Implements various simple function utilities and flexible pipelines to generate circular images for visualizing complex genomic and network data analysis features.
Author: Minghui Wang, Bin Zhang
Maintainer: Minghui Wang <m.h.wang@live.com>
Diff between NetWeaver versions 0.0.1 dated 2016-12-22 and 0.0.2 dated 2017-01-10
DESCRIPTION | 10 ++-- MD5 | 35 +++++++++----- NAMESPACE | 4 + R/rc.initialize.R | 1 R/rc.plot.area.R | 1 R/rc.plot.histogram.R | 1 R/rc.plot.line.R |only R/rc.plot.mHistogram.R | 8 ++- R/rc.plot.text.R |only R/rc.plot.track.id.R | 3 - build |only inst |only man/Modules.Rd | 109 +--------------------------------------------- man/NetWeaver.Rd | 2 man/rc.initialize.Rd | 15 +++--- man/rc.plot.histogram.Rd | 2 man/rc.plot.line.Rd |only man/rc.plot.mHistogram.Rd | 11 ++-- man/rc.plot.text.Rd |only man/rc.plot.track.id.Rd | 4 - vignettes |only 21 files changed, 61 insertions(+), 145 deletions(-)
Title: Generalized Order-Restricted Information Criterion for Selecting
Order-Restricted (Multivariate) Linear Models
Description: Generalized Order-Restricted Information Criterion (GORIC) value for a set of hypotheses in multivariate regression models.
Author: Daniel Gerhard [aut, cre],
Rebecca M. Kuiper [aut]
Maintainer: Daniel Gerhard <00gerhard@gmail.com>
Diff between goric versions 0.0-8 dated 2014-11-16 and 0.0-95 dated 2017-01-10
DESCRIPTION | 17 ++++++++++------- MD5 | 13 +++++++++---- NAMESPACE | 6 ++++++ R/goric.R | 8 +++++++- R/orglm.R | 2 +- build |only inst |only vignettes |only 8 files changed, 33 insertions(+), 13 deletions(-)
Title: Bayesian Adaptive Spline Surfaces
Description: Bayesian fitting and sensitivity analysis methods for adaptive
spline surfaces. Built to handle continuous and categorical inputs as well as
functional or scalar output. An extension of the methodology in Denison, Mallick
and Smith (1998) <doi:10.1023/A:1008824606259>.
Author: Devin Francom [aut, cre],
Bruno Sanso [ths],
Agner Fog [ctb, cph]
Maintainer: Devin Francom <devinfrancom@gmail.com>
Diff between BASS versions 0.1.0 dated 2016-12-16 and 0.2.0 dated 2017-01-10
DESCRIPTION | 10 +++--- MD5 | 35 ++++++++++++--------- NEWS.md |only R/bass.R | 77 ++++++++++++++++++++++++++++-------------------- R/mcmc_funcs.R | 5 +-- R/mcmc_update.R | 12 +++---- R/misc.R | 12 ++++--- R/plot.R | 6 +-- R/rjmcmc_cat.R | 6 +-- R/rjmcmc_cat_func.R | 6 +-- R/rjmcmc_des.R | 6 +-- R/rjmcmc_des_cat.R | 6 +-- R/rjmcmc_des_cat_func.R | 6 +-- R/rjmcmc_des_func.R | 6 +-- R/sobol.R | 36 ++++++++++++++-------- build |only inst |only man/bass.Rd | 18 +++++------ man/plot.bassSob.Rd | 2 - vignettes |only 20 files changed, 142 insertions(+), 107 deletions(-)
Title: Practical Item Response Theory and Computer-Based Testing in R
Description: An implementation of item response theory (IRT) and computer-based testing in R. It is designed for bridging the gap between theoretical advancements in psychometric research and their applications in practice. Currently, it consists of five modules: (1) common IRT functions, (2) estimation procedures, (3) automated test assembly framework, (4) computerized adaptive testing framework, (5) multistage testing framework. See detailed documentation at <https://github.com/xluo11/xxIRT/blob/master/README.md>.
Author: Xiao Luo [aut, cre]
Maintainer: Xiao Luo <xluo1986@gmail.com>
Diff between xxIRT versions 1.1.0 dated 2016-08-29 and 2.0.0 dated 2017-01-10
xxIRT-1.1.0/xxIRT/R/assembly.R |only xxIRT-1.1.0/xxIRT/R/assemblyGUI.R |only xxIRT-1.1.0/xxIRT/R/cat.R |only xxIRT-1.1.0/xxIRT/R/catGUI.R |only xxIRT-1.1.0/xxIRT/R/commons.R |only xxIRT-1.1.0/xxIRT/R/estimation.R |only xxIRT-1.1.0/xxIRT/R/estimationGUI.R |only xxIRT-1.1.0/xxIRT/R/mst.R |only xxIRT-1.1.0/xxIRT/R/mstGUI.R |only xxIRT-1.1.0/xxIRT/R/utility.R |only xxIRT-1.1.0/xxIRT/R/winsteps.R |only xxIRT-1.1.0/xxIRT/man/ataGUI.Rd |only xxIRT-1.1.0/xxIRT/man/catGUI.Rd |only xxIRT-1.1.0/xxIRT/man/estimate.item.jmle.Rd |only xxIRT-1.1.0/xxIRT/man/estimate.theta.mle.Rd |only xxIRT-1.1.0/xxIRT/man/estimationGUI.Rd |only xxIRT-1.1.0/xxIRT/man/gen.irt.Rd |only xxIRT-1.1.0/xxIRT/man/irt.Rd |only xxIRT-1.1.0/xxIRT/man/mstGUI.Rd |only xxIRT-1.1.0/xxIRT/man/prob.Rd |only xxIRT-1.1.0/xxIRT/man/winsteps.Rd |only xxIRT-2.0.0/xxIRT/DESCRIPTION | 14 xxIRT-2.0.0/xxIRT/MD5 | 58 +- xxIRT-2.0.0/xxIRT/NAMESPACE | 69 +-- xxIRT-2.0.0/xxIRT/R/module0_gui_ata.R |only xxIRT-2.0.0/xxIRT/R/module0_gui_cat.R |only xxIRT-2.0.0/xxIRT/R/module0_gui_estimation.R |only xxIRT-2.0.0/xxIRT/R/module0_gui_irt.R |only xxIRT-2.0.0/xxIRT/R/module0_gui_mst.R |only xxIRT-2.0.0/xxIRT/R/module1_3PLmodel.R |only xxIRT-2.0.0/xxIRT/R/module1_commons.R |only xxIRT-2.0.0/xxIRT/R/module1_utilities.R |only xxIRT-2.0.0/xxIRT/R/module2_estimations.R |only xxIRT-2.0.0/xxIRT/R/module3_ata.R |only xxIRT-2.0.0/xxIRT/R/module4_cat.R |only xxIRT-2.0.0/xxIRT/R/module5_mst.R |only xxIRT-2.0.0/xxIRT/README.md | 572 +++++++++++++++++---------- xxIRT-2.0.0/xxIRT/man/ata.Rd | 249 +++++++---- xxIRT-2.0.0/xxIRT/man/cat.sim.Rd | 157 +++++-- xxIRT-2.0.0/xxIRT/man/estimate.3pl.Rd |only xxIRT-2.0.0/xxIRT/man/estimate.items.Rd |only xxIRT-2.0.0/xxIRT/man/estimate.people.Rd |only xxIRT-2.0.0/xxIRT/man/gui.ata.Rd |only xxIRT-2.0.0/xxIRT/man/gui.cat.Rd |only xxIRT-2.0.0/xxIRT/man/gui.estimation.Rd |only xxIRT-2.0.0/xxIRT/man/gui.irt.Rd |only xxIRT-2.0.0/xxIRT/man/gui.mst.Rd |only xxIRT-2.0.0/xxIRT/man/irt.model.3pl.Rd |only xxIRT-2.0.0/xxIRT/man/irt.model.Rd |only xxIRT-2.0.0/xxIRT/man/mst.Rd | 270 +++++++----- xxIRT-2.0.0/xxIRT/man/quadrature.Rd |only xxIRT-2.0.0/xxIRT/man/rmse.Rd | 23 - 52 files changed, 860 insertions(+), 552 deletions(-)
Title: Text Processing for Small or Big Data Files
Description: Processes big text data files in batches efficiently. For this purpose, it offers functions for splitting, parsing, tokenizing and creating a vocabulary. Moreover, it includes functions for building either a document-term matrix or a term-document matrix and extracting information from those (term-associations, most frequent terms). Lastly, it embodies functions for calculating token statistics (collocations, look-up tables, string dissimilarities) and functions to work with sparse matrices. The source code is based on 'C++11' and exported in R through the 'Rcpp', 'RcppArmadillo' and 'BH' packages.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between textTinyR versions 1.0.0 dated 2017-01-07 and 1.0.1 dated 2017-01-10
DESCRIPTION | 8 MD5 | 72 NAMESPACE | 56 NEWS.md | 8 R/RcppExports.R | 270 +- R/utils.R | 81 README.md | 12 build/vignette.rds |binary cleanup | 16 configure | 1 configure.ac | 7 inst/doc/functionality_of_textTinyR_package.R | 2419 ++++++++++--------- inst/doc/functionality_of_textTinyR_package.Rmd | 163 - inst/doc/functionality_of_textTinyR_package.html | 2792 +++++++++++------------ man/big_tokenize_transform.Rd | 402 +-- man/bytes_converter.Rd | 52 man/cosine_distance.Rd | 64 man/dense_2sparse.Rd | 52 man/dice_distance.Rd | 64 man/levenshtein_distance.Rd | 60 man/load_sparse_binary.Rd | 48 man/matrix_sparsity.Rd | 56 man/read_characters.Rd | 50 man/read_rows.Rd | 56 man/save_sparse_binary.Rd | 60 man/sparse_Means.Rd | 60 man/sparse_Sums.Rd | 60 man/sparse_term_matrix.Rd | 344 +- man/text_file_parser.Rd | 88 man/token_stats.Rd | 326 +- man/tokenize_transform_text.Rd | 250 +- man/tokenize_transform_vec_docs.Rd | 240 - man/utf_locale.Rd | 54 man/vocabulary_parser.Rd | 222 - src/Makevars.in | 2 src/RcppExports.cpp | 212 - vignettes/functionality_of_textTinyR_package.Rmd | 163 - 37 files changed, 4552 insertions(+), 4338 deletions(-)
Title: Regression Spline Functions and Classes Too
Description: A complementary package on splines providing functions
constructing B-splines, integral of B-splines, monotone splines
(M-splines) and its integral (I-splines), convex splines (C-splines),
and their derivatives of given order. Piecewise constant basis is
allowed for B-spline and M-spline basis.
Author: Wenjie Wang [aut, cre],
Jun Yan [aut]
Maintainer: Wenjie Wang <wenjie.2.wang@uconn.edu>
Diff between splines2 versions 0.2.3 dated 2016-12-10 and 0.2.4 dated 2017-01-10
DESCRIPTION | 17 +-- MD5 | 60 ++++++----- NAMESPACE | 11 ++ NEWS.md | 27 +++++ R/bSpline.R | 189 +++++++++++++++++++++-------------- R/cSpline.R | 192 +++++++++++++++++++++--------------- R/dbs.R |only R/deriv.R |only R/iSpline.R | 229 ++++++++++++++++++++++++------------------- R/ibs.R | 69 +++++++----- R/mSpline.R | 111 +++++++++++++------- R/predict.R | 79 ++++++++++---- R/print.R | 26 +++- R/splines2-package.R | 11 +- inst/CITATION | 8 - inst/doc/splines2-intro.R | 26 ++++ inst/doc/splines2-intro.Rmd | 111 ++++++++++++++------ inst/doc/splines2-intro.html | 51 ++++++--- man/bSpline.Rd | 62 ++++++----- man/cSpline.Rd | 78 ++++++++------ man/dbs.Rd |only man/deriv.Rd |only man/iSpline.Rd | 70 +++++++------ man/ibs.Rd | 38 +++---- man/mSpline.Rd | 68 +++++++----- man/predict.Rd | 31 +++-- man/print.Rd | 14 +- man/splines2.Rd | 9 - tests |only vignettes/splines2-intro.Rmd | 111 ++++++++++++++------ 30 files changed, 1054 insertions(+), 644 deletions(-)
Title: Risk Neutral Density Extraction Package
Description: Extract the implied risk neutral density from options using various methods.
Author: Kam Hamidieh <khamidieh@gmail.com>
Maintainer: Kam Hamidieh <khamidieh@gmail.com>
Diff between RND versions 1.1 dated 2014-03-22 and 1.2 dated 2017-01-10
DESCRIPTION | 14 +++++++------- MD5 | 6 +++--- NAMESPACE | 4 ++++ man/RND-package.Rd | 6 +++--- 4 files changed, 17 insertions(+), 13 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences.
All routines based on ( Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995) ).
Author: Fred Viole
Maintainer: Fred Viole <viole.nawrocki@gmail.com>
Diff between NNS versions 0.2.4 dated 2016-11-28 and 0.2.5 dated 2017-01-10
NNS-0.2.4/NNS/man/VN.ANOVA.Rd |only NNS-0.2.4/NNS/man/VN.ANOVA.bin.Rd |only NNS-0.2.4/NNS/man/VN.ARMA.Rd |only NNS-0.2.4/NNS/man/VN.FSD.Rd |only NNS-0.2.4/NNS/man/VN.M.reg.Rd |only NNS-0.2.4/NNS/man/VN.SD.Efficient.Set.Rd |only NNS-0.2.4/NNS/man/VN.SSD.Rd |only NNS-0.2.4/NNS/man/VN.SSD.uni.Rd |only NNS-0.2.4/NNS/man/VN.TSD.Rd |only NNS-0.2.4/NNS/man/VN.caus.Rd |only NNS-0.2.4/NNS/man/VN.cor.Rd |only NNS-0.2.4/NNS/man/VN.dep.Rd |only NNS-0.2.4/NNS/man/VN.norm.Rd |only NNS-0.2.4/NNS/man/VN.reg.Rd |only NNS-0.2.4/NNS/man/VN.seas.Rd |only NNS-0.2.5/NNS/DESCRIPTION | 11 +- NNS-0.2.5/NNS/MD5 | 92 ++++++++++++------------ NNS-0.2.5/NNS/NAMESPACE | 31 ++++---- NNS-0.2.5/NNS/R/ANOVA.R | 16 ++-- NNS-0.2.5/NNS/R/ARMA.R | 12 +-- NNS-0.2.5/NNS/R/Binary_ANOVA.R | 11 +- NNS-0.2.5/NNS/R/Causation.R | 14 +-- NNS-0.2.5/NNS/R/Correlation.R | 21 +++-- NNS-0.2.5/NNS/R/Dependence.R | 25 +++--- NNS-0.2.5/NNS/R/FSD.R | 6 - NNS-0.2.5/NNS/R/Feature_probability.R | 4 - NNS-0.2.5/NNS/R/Find_Interval.R | 6 - NNS-0.2.5/NNS/R/Multivariate_Regression.R | 29 +++---- NNS-0.2.5/NNS/R/NNS_term_matrix.R | 2 NNS-0.2.5/NNS/R/Normalization.R | 23 +++--- NNS-0.2.5/NNS/R/Partial_Moments.R | 2 NNS-0.2.5/NNS/R/Partition_Map.R | 6 - NNS-0.2.5/NNS/R/Regression.R | 104 ++++++++++++---------------- NNS-0.2.5/NNS/R/SD_Efficient_Set.R | 12 +-- NNS-0.2.5/NNS/R/SSD.R | 6 - NNS-0.2.5/NNS/R/Seasonality_Test.R | 6 - NNS-0.2.5/NNS/R/Stack.R |only NNS-0.2.5/NNS/R/Stack_intermediate.R |only NNS-0.2.5/NNS/R/TSD.R | 6 - NNS-0.2.5/NNS/R/Uni_SD_Routines.R | 6 - NNS-0.2.5/NNS/R/dy_d_wrt.R | 12 +-- NNS-0.2.5/NNS/R/dy_dx.R | 12 +-- NNS-0.2.5/NNS/man/NNS.ANOVA.Rd |only NNS-0.2.5/NNS/man/NNS.ANOVA.bin.Rd |only NNS-0.2.5/NNS/man/NNS.ARMA.Rd |only NNS-0.2.5/NNS/man/NNS.FSD.Rd |only NNS-0.2.5/NNS/man/NNS.M.reg.Rd |only NNS-0.2.5/NNS/man/NNS.SD.Efficient.Set.Rd |only NNS-0.2.5/NNS/man/NNS.SSD.Rd |only NNS-0.2.5/NNS/man/NNS.SSD.uni.Rd |only NNS-0.2.5/NNS/man/NNS.TSD.Rd |only NNS-0.2.5/NNS/man/NNS.caus.Rd |only NNS-0.2.5/NNS/man/NNS.cor.Rd |only NNS-0.2.5/NNS/man/NNS.dep.Rd |only NNS-0.2.5/NNS/man/NNS.norm.Rd |only NNS-0.2.5/NNS/man/NNS.reg.Rd |only NNS-0.2.5/NNS/man/NNS.seas.Rd |only NNS-0.2.5/NNS/man/NNS.stack.Rd |only NNS-0.2.5/NNS/man/NNS.stack.intermediate.Rd |only NNS-0.2.5/NNS/man/NNS.term.matrix.Rd | 2 NNS-0.2.5/NNS/man/dy.d_.Rd | 8 +- NNS-0.2.5/NNS/man/dy.dx.Rd | 6 - NNS-0.2.5/NNS/man/findInterval2.Rd | 5 - NNS-0.2.5/NNS/man/partition.map.Rd | 4 - 64 files changed, 244 insertions(+), 256 deletions(-)
Title: Quantitative Analysis of Mass Spectrometry Data
Description: A complete analysis pipeline for matrix-assisted laser
desorption/ionization-time-of-flight (MALDI-TOF) and other
two-dimensional mass spectrometry data. In addition to commonly
used plotting and processing methods it includes distinctive
features, namely baseline subtraction methods such as
morphological filters (TopHat) or the statistics-sensitive
non-linear iterative peak-clipping algorithm (SNIP), peak
alignment using warping functions, handling of replicated
measurements as well as allowing spectra with different
resolutions.
Author: Sebastian Gibb [aut, cre],
Korbinian Strimmer [ths]
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>
Diff between MALDIquant versions 1.16 dated 2016-12-13 and 1.16.1 dated 2017-01-10
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 8 ++++++++ R/match.closest-functions.R | 2 ++ inst/doc/MALDIquant-intro.pdf |binary tests/testthat/test_match.closest-functions.R | 8 ++++++++ 6 files changed, 27 insertions(+), 9 deletions(-)
Title: Tools for Remote Sensing Data Analysis
Description: Toolbox for remote sensing image processing and analysis such as
calculating spectral indices, principal component transformation, unsupervised
and supervised classification or fractional cover analyses.
Author: Benjamin Leutner [cre, aut],
Ned Horning [aut]
Maintainer: Benjamin Leutner <benjamin.leutner@uni-wuerzburg.de>
Diff between RStoolbox versions 0.1.6 dated 2016-11-07 and 0.1.7 dated 2017-01-10
DESCRIPTION | 10 MD5 | 111 ++++--- NAMESPACE | 3 NEWS | 28 + R/RStoolbox.R | 6 R/RcppExports.R | 4 R/classifyQA.R | 6 R/coregisterImages.R | 3 R/encodeQA.R | 2 R/estimateHaze.R | 5 R/fCover.R | 29 + R/ggR.R | 5 R/ggRGB.R | 4 R/panSharpen.R | 3 R/pifMatch.R | 7 R/radCor.R | 7 R/readMeta.R | 484 ++++++++++++++++----------------- R/readSLI.R | 97 +++--- R/sam.R | 29 + R/spectralIndices.R | 51 ++- R/superClass.R | 96 ++++-- R/sysdata.rda |binary R/topCor.R | 28 + R/validateMap.R | 8 inst/external/vegSpec.sli |only inst/external/vegSpec.sli.hdr |only man/coregisterImages.Rd | 3 man/encodeQA.Rd | 2 man/estimateHaze.Rd | 2 man/fCover.Rd | 4 man/ggR.Rd | 3 man/panSharpen.Rd | 3 man/pifMatch.Rd | 6 man/radCor.Rd | 3 man/readSLI.Rd | 22 - man/sam.Rd | 8 man/spectralIndices.Rd | 27 + man/topCor.Rd | 4 man/validateMap.Rd | 8 man/writeSLI.Rd | 24 - src/RcppExports.cpp | 9 src/pwSimilarity.cpp | 3 src/spectralIndices.cpp | 55 +-- tests/testthat/test-classifyQA.R |only tests/testthat/test-cloudMask.R |only tests/testthat/test-coregisterImages.R |only tests/testthat/test-fCover.R |only tests/testthat/test-getMeta.R |only tests/testthat/test-ggplot.R | 9 tests/testthat/test-mlc.R |only tests/testthat/test-multicore.R | 70 ++-- tests/testthat/test-normImage.R | 47 ++- tests/testthat/test-pifMatch.R |only tests/testthat/test-readEE.R |only tests/testthat/test-readMeta.R | 11 tests/testthat/test-rsOpts.R |only tests/testthat/test-sam.R |only tests/testthat/test-sli.R |only tests/testthat/test-spectralIndices.R | 32 +- tests/testthat/test-superClass.R | 24 + tests/testthat/test-tasseledCap.R |only tests/testthat/test-topCor.R |only tests/testthat/test-unsuperClass.R | 29 + tests/testthat/test-validateMap.R | 5 64 files changed, 844 insertions(+), 595 deletions(-)
Title: Tools for an Introductory Class in Regression and Modeling
Description: Contains basic tools for visualizing, interpreting, and building regression models. It has been designed for use with the book Introduction to Regression and Modeling with R by Adam Petrie, Cognella Publishers, ISBN: 978-1-63189-250-9 <https://titles.cognella.com/behavioral-and-social-sciences/general-social-sciences/introduction-to-regression-and-modeling-with-r-9781631892509.html>.
Author: Adam Petrie
Maintainer: Adam Petrie <apetrie@utk.edu>
Diff between regclass versions 1.4 dated 2016-08-06 and 1.5 dated 2017-01-10
DESCRIPTION | 10 +- MD5 | 155 ++++++++++++++++++----------------- R/Untitled.R |only R/all_correlations.R | 44 ++++++++-- R/build_tree.R | 4 R/combine_rare_levels.R |only R/mode_factor.R |only R/mosaic.R | 182 ++++++++++++++++++++++-------------------- R/see_interactions.R | 2 R/suggest_levels.R | 50 +++-------- R/visualize_relationship.R | 6 - R/zzz.R | 2 data/ACCOUNT.rda |binary data/APPLIANCE.rda |binary data/ATTRACTF.rda |binary data/ATTRACTM.rda |binary data/AUTO.rda |binary data/BODYFAT.rda |binary data/BODYFAT2.rda |binary data/BULLDOZER.rda |binary data/BULLDOZER2.rda |binary data/CALLS.rda |binary data/CENSUS.rda |binary data/CENSUSMLR.rda |binary data/CHARITY.rda |binary data/CHURN.rda |binary data/CUSTCHURN.rda |binary data/CUSTLOYALTY.rda |binary data/CUSTREACQUIRE.rda |binary data/CUSTVALUE.rda |binary data/DIET.rda |binary data/DONOR.rda |binary data/EDUCATION.rda |binary data/EX2.CENSUS.rda |binary data/EX2.TIPS.rda |binary data/EX3.ABALONE.rda |binary data/EX3.BODYFAT.rda |binary data/EX3.HOUSING.rda |binary data/EX3.NFL.rda |binary data/EX4.BIKE.rda |binary data/EX4.STOCKPREDICT.rda |binary data/EX4.STOCKS.rda |binary data/EX5.BIKE.rda |binary data/EX5.DONOR.rda |binary data/EX6.CLICK.rda |binary data/EX6.DONOR.rda |binary data/EX6.WINE.rda |binary data/EX7.BIKE.rda |binary data/EX7.CATALOG.rda |binary data/EX9.BIRTHWEIGHT.rda |binary data/EX9.NFL.rda |binary data/EX9.STORE.rda |binary data/FRIEND.rda |binary data/FUMBLES.rda |binary data/JUNK.rda |binary data/LARGEFLYER.rda |binary data/LAUNCH.rda |binary data/MOVIE.rda |binary data/NFL.rda |binary data/OFFENSE.rda |binary data/PIMA.rda |binary data/POISON.rda |binary data/PRODUCT.rda |binary data/PURCHASE.rda |binary data/SALARY.rda |binary data/SMALLFLYER.rda |binary data/SOLD26.rda |binary data/SPEED.rda |binary data/STUDENT.rda |binary data/SURVEY09.rda |binary data/SURVEY10.rda |binary data/SURVEY11.rda |binary data/TIPS.rda |binary data/WINE.rda |binary man/all_correlations.Rd | 4 man/build_tree.Rd | 7 + man/combine_rare_levels.Rd |only man/mode_factor.Rd |only man/mosaic.Rd | 21 ++++ man/suggest_levels.Rd | 20 ++-- man/visualize_relationship.Rd | 7 - 81 files changed, 284 insertions(+), 230 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Daniel Adler <dadler@uni-goettingen.de>, Duncan Murdoch <murdoch@stats.uwo.ca>, and others (see README)
Maintainer: Duncan Murdoch <murdoch@stats.uwo.ca>
Diff between rgl versions 0.96.0 dated 2016-08-25 and 0.97.0 dated 2017-01-10
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Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications as things
that can be generated and manipulated programmatically. Structural equation
models may be specified with reticular action model matrices or paths, linear
structural relations matrices or paths, or directly in matrix algebra. Fit
functions include full information maximum likelihood, maximum likelihood, and
weighted least squares. Example models include confirmatory factor, multiple
group, mixture distribution, categorical threshold, modern test theory,
differential equations, state space, and many others.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb],
Charles Driver [ctb],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Association for Computing Machinery [cph],
Dieter Kraft [cph],
Stefan Wilhelm [cph],
Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.6.9 dated 2016-07-28 and 2.7.2 dated 2017-01-10
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18 OpenMx-2.7.2/OpenMx/man/MxAlgebra-class.Rd | 4 OpenMx-2.7.2/OpenMx/man/MxBounds-class.Rd | 4 OpenMx-2.7.2/OpenMx/man/MxCI-class.Rd | 4 OpenMx-2.7.2/OpenMx/man/MxConstraint-class.Rd | 54 OpenMx-2.7.2/OpenMx/man/MxData-class.Rd | 4 OpenMx-2.7.2/OpenMx/man/MxExpectationGREML-class.Rd | 2 OpenMx-2.7.2/OpenMx/man/MxFitFunctionGREML-class.Rd | 2 OpenMx-2.7.2/OpenMx/man/MxMatrix-class.Rd | 4 OpenMx-2.7.2/OpenMx/man/MxModel-class.Rd | 4 OpenMx-2.7.2/OpenMx/man/Named-entity.Rd | 2 OpenMx-2.7.2/OpenMx/man/cvectorize.Rd | 2 OpenMx-2.7.2/OpenMx/man/demoOneFactor_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/demoTwoFactor_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/diag2vec.Rd | 2 OpenMx-2.7.2/OpenMx/man/eigenvec.Rd | 2 OpenMx-2.7.2/OpenMx/man/example1_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/example2_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/factorExample1_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/factorScaleExample1_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/factorScaleExample2_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/imxReportProgress.Rd |only OpenMx-2.7.2/OpenMx/man/imxWlsChiSquare.Rd | 2 OpenMx-2.7.2/OpenMx/man/imxWlsStandardErrors.Rd | 2 OpenMx-2.7.2/OpenMx/man/jointdata_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/latentMultipleRegExample1_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/latentMultipleRegExample2_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/multiData1_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/mxAlgebra.Rd | 14 OpenMx-2.7.2/OpenMx/man/mxAlgebraObjective.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxBounds.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxCI.Rd | 50 OpenMx-2.7.2/OpenMx/man/mxCheckIdentification.Rd | 2 OpenMx-2.7.2/OpenMx/man/mxCompare.Rd | 2 OpenMx-2.7.2/OpenMx/man/mxComputeConfidenceInterval.Rd | 45 OpenMx-2.7.2/OpenMx/man/mxComputeGradientDescent.Rd | 16 OpenMx-2.7.2/OpenMx/man/mxComputeIterate.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxComputeNumericDeriv.Rd | 8 OpenMx-2.7.2/OpenMx/man/mxComputeTryHard.Rd |only OpenMx-2.7.2/OpenMx/man/mxConstraint.Rd | 20 OpenMx-2.7.2/OpenMx/man/mxData.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxDataWLS.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxEval.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxExpectationBA81.Rd | 62 OpenMx-2.7.2/OpenMx/man/mxExpectationGREML.Rd | 2 OpenMx-2.7.2/OpenMx/man/mxExpectationLISREL.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxExpectationNormal.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxExpectationRAM.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxExpectationStateSpace.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxExpectationStateSpaceContinuousTime.Rd | 6 OpenMx-2.7.2/OpenMx/man/mxFIMLObjective.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxFactor.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxFactorScores.Rd | 25 OpenMx-2.7.2/OpenMx/man/mxFitFunctionAlgebra.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxFitFunctionGREML.Rd | 2 OpenMx-2.7.2/OpenMx/man/mxFitFunctionML.Rd | 19 OpenMx-2.7.2/OpenMx/man/mxFitFunctionMultigroup.Rd | 2 OpenMx-2.7.2/OpenMx/man/mxFitFunctionR.Rd | 6 OpenMx-2.7.2/OpenMx/man/mxFitFunctionRow.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxFitFunctionWLS.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxGREMLDataHandler.Rd | 2 OpenMx-2.7.2/OpenMx/man/mxGenerateData.Rd | 24 OpenMx-2.7.2/OpenMx/man/mxGetExpected.Rd | 13 OpenMx-2.7.2/OpenMx/man/mxKalmanScores.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxLISRELObjective.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxMI.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxMLObjective.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxMatrix.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxModel.Rd | 8 OpenMx-2.7.2/OpenMx/man/mxOption.Rd | 26 OpenMx-2.7.2/OpenMx/man/mxPath.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxRAMObjective.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxRObjective.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxRename.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxRestore.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxRowObjective.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxRun.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxSE.Rd |only OpenMx-2.7.2/OpenMx/man/mxSave.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxThreshold.Rd | 4 OpenMx-2.7.2/OpenMx/man/mxTryHard.Rd | 6 OpenMx-2.7.2/OpenMx/man/mxTypes.Rd | 2 OpenMx-2.7.2/OpenMx/man/mxVersion.Rd | 4 OpenMx-2.7.2/OpenMx/man/myAutoregressiveData_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/myFADataRaw.Rd | 2 OpenMx-2.7.2/OpenMx/man/myGrowthKnownClassData_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/myGrowthMixtureData_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/myLongitudinalData_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/myRegDataRaw_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/myRegData_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/myTwinData_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/nuclear_twin_design_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxAllInt.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxApply.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxAssignFirstParameters.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxBrownie.Rd | 4 OpenMx-2.7.2/OpenMx/man/omxCheckCloseEnough.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxCheckEquals.Rd | 4 OpenMx-2.7.2/OpenMx/man/omxCheckError.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxCheckIdentical.Rd | 4 OpenMx-2.7.2/OpenMx/man/omxCheckSetEquals.Rd | 4 OpenMx-2.7.2/OpenMx/man/omxCheckTrue.Rd | 4 OpenMx-2.7.2/OpenMx/man/omxCheckWarning.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxCheckWithinPercentError.Rd | 4 OpenMx-2.7.2/OpenMx/man/omxDefaultComputePlan.Rd |only OpenMx-2.7.2/OpenMx/man/omxGetParameters.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxGraphviz.Rd | 4 OpenMx-2.7.2/OpenMx/man/omxLapply.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxLocateParameters.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxLogical.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxManifestModelByParameterJacobian.Rd | 9 OpenMx-2.7.2/OpenMx/man/omxMatrixOperations.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxMnor.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxRMSEA.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxSapply.Rd | 2 OpenMx-2.7.2/OpenMx/man/omxSaturatedModel.Rd | 24 OpenMx-2.7.2/OpenMx/man/omxSelectRowsAndCols.Rd | 4 OpenMx-2.7.2/OpenMx/man/omxSetParameters.Rd | 2 OpenMx-2.7.2/OpenMx/man/rvectorize.Rd | 2 OpenMx-2.7.2/OpenMx/man/summary.MxModel.Rd | 12 OpenMx-2.7.2/OpenMx/man/tr.Rd | 2 OpenMx-2.7.2/OpenMx/man/twinData.Rd | 2 OpenMx-2.7.2/OpenMx/man/twin_NA_dot_data.Rd | 2 OpenMx-2.7.2/OpenMx/man/vec2diag.Rd | 2 OpenMx-2.7.2/OpenMx/man/vech.Rd | 2 OpenMx-2.7.2/OpenMx/man/vech2full.Rd | 2 OpenMx-2.7.2/OpenMx/man/vechs.Rd | 2 OpenMx-2.7.2/OpenMx/man/vechs2full.Rd | 2 OpenMx-2.7.2/OpenMx/src/AlgebraFunctions.h | 172 + OpenMx-2.7.2/OpenMx/src/Compute.cpp | 308 +- OpenMx-2.7.2/OpenMx/src/Compute.h | 74 OpenMx-2.7.2/OpenMx/src/ComputeGD.cpp | 1171 ++++++++- OpenMx-2.7.2/OpenMx/src/ComputeNR.cpp | 42 OpenMx-2.7.2/OpenMx/src/ComputeSD.cpp | 18 OpenMx-2.7.2/OpenMx/src/FellnerFitFunction.cpp | 34 OpenMx-2.7.2/OpenMx/src/Makevars.in | 4 OpenMx-2.7.2/OpenMx/src/RAMInternal.h | 96 OpenMx-2.7.2/OpenMx/src/autodep | 364 +- OpenMx-2.7.2/OpenMx/src/ba81quad.cpp | 68 OpenMx-2.7.2/OpenMx/src/ba81quad.h | 23 OpenMx-2.7.2/OpenMx/src/dmvnorm.cpp | 11 OpenMx-2.7.2/OpenMx/src/glue.cpp | 211 + OpenMx-2.7.2/OpenMx/src/glue.h | 15 OpenMx-2.7.2/OpenMx/src/matrix.cpp | 4 OpenMx-2.7.2/OpenMx/src/merge.cpp | 4 OpenMx-2.7.2/OpenMx/src/nanotimer_gettime.h |only OpenMx-2.7.2/OpenMx/src/nanotimer_macosx.h |only OpenMx-2.7.2/OpenMx/src/nanotimer_rtposix.h |only OpenMx-2.7.2/OpenMx/src/nanotimer_windows.h |only OpenMx-2.7.2/OpenMx/src/nloptcpp.cpp | 74 OpenMx-2.7.2/OpenMx/src/omxAlgebra.cpp | 21 OpenMx-2.7.2/OpenMx/src/omxAlgebra.h | 9 OpenMx-2.7.2/OpenMx/src/omxAlgebraFitFunction.cpp | 8 OpenMx-2.7.2/OpenMx/src/omxCsolnp.cpp | 35 OpenMx-2.7.2/OpenMx/src/omxCsolnp.h | 9 OpenMx-2.7.2/OpenMx/src/omxData.cpp | 447 --- OpenMx-2.7.2/OpenMx/src/omxData.h | 69 OpenMx-2.7.2/OpenMx/src/omxDefines.h | 139 + OpenMx-2.7.2/OpenMx/src/omxExpectation.cpp | 153 - OpenMx-2.7.2/OpenMx/src/omxExpectation.h | 37 OpenMx-2.7.2/OpenMx/src/omxExpectationBA81.cpp | 23 OpenMx-2.7.2/OpenMx/src/omxExpectationBA81.h | 6 OpenMx-2.7.2/OpenMx/src/omxExportBackendState.cpp | 10 OpenMx-2.7.2/OpenMx/src/omxFIMLFitFunction.cpp | 1012 +++++++- OpenMx-2.7.2/OpenMx/src/omxFIMLFitFunction.h | 337 ++ OpenMx-2.7.2/OpenMx/src/omxFIMLSingleIteration.cpp | 364 +- OpenMx-2.7.2/OpenMx/src/omxFitFunction.cpp | 108 OpenMx-2.7.2/OpenMx/src/omxFitFunction.h | 18 OpenMx-2.7.2/OpenMx/src/omxFitFunctionBA81.cpp | 64 OpenMx-2.7.2/OpenMx/src/omxGREMLExpectation.cpp | 47 OpenMx-2.7.2/OpenMx/src/omxGREMLExpectation.h | 3 OpenMx-2.7.2/OpenMx/src/omxGREMLfitfunction.cpp | 756 ++++-- OpenMx-2.7.2/OpenMx/src/omxGREMLfitfunction.h | 27 OpenMx-2.7.2/OpenMx/src/omxHessianCalculation.cpp | 25 OpenMx-2.7.2/OpenMx/src/omxImportFrontendState.cpp | 66 OpenMx-2.7.2/OpenMx/src/omxLISRELExpectation.cpp | 7 OpenMx-2.7.2/OpenMx/src/omxLISRELExpectation.h | 2 OpenMx-2.7.2/OpenMx/src/omxMLFitFunction.cpp | 54 OpenMx-2.7.2/OpenMx/src/omxMatrix.cpp | 70 OpenMx-2.7.2/OpenMx/src/omxMatrix.h | 104 OpenMx-2.7.2/OpenMx/src/omxNPSOLSpecific.cpp | 231 + OpenMx-2.7.2/OpenMx/src/omxNPSOLSpecific.h | 2 OpenMx-2.7.2/OpenMx/src/omxNormalExpectation.cpp | 6 OpenMx-2.7.2/OpenMx/src/omxNormalExpectation.h | 2 OpenMx-2.7.2/OpenMx/src/omxRAMExpectation.cpp | 186 - OpenMx-2.7.2/OpenMx/src/omxRFitFunction.cpp | 11 OpenMx-2.7.2/OpenMx/src/omxRFitFunction.h | 2 OpenMx-2.7.2/OpenMx/src/omxRowFitFunction.cpp | 46 OpenMx-2.7.2/OpenMx/src/omxRowFitFunction.h | 28 OpenMx-2.7.2/OpenMx/src/omxSadmvnWrapper.h | 508 +++- OpenMx-2.7.2/OpenMx/src/omxState.cpp | 214 + OpenMx-2.7.2/OpenMx/src/omxState.h | 111 OpenMx-2.7.2/OpenMx/src/omxStateSpaceExpectation.cpp | 153 - OpenMx-2.7.2/OpenMx/src/omxStateSpaceExpectation.h | 5 OpenMx-2.7.2/OpenMx/src/omxSymbolTable.cpp | 6 OpenMx-2.7.2/OpenMx/src/omxSymbolTable.h | 6 OpenMx-2.7.2/OpenMx/src/omxWLSFitFunction.cpp | 460 ++- OpenMx-2.7.2/OpenMx/src/ssMLFit.cpp |only OpenMx-2.7.2/OpenMx/src/subnp.cpp | 48 623 files changed, 10690 insertions(+), 4705 deletions(-)
More information about NetworkRiskMeasures at CRAN
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Title: Multiple-Instance Logistic Regression with LASSO Penalty
Description: The multiple instance data set consists of many independent subjects
(called bags) and each subject is composed of several components (called instances).
The outcomes of such data set are binary or multinomial, and, we can only observe
the subject-level outcomes. For example, in manufactory processes, a subject is labeled
as "defective" if at least one of its own components is defective, and otherwise, is
labeled as "non-defective". The 'milr' package focuses on the predictive model for the
multiple instance data set with binary outcomes and performs the maximum likelihood
estimation with the Expectation-Maximization algorithm under the framework of logistic
regression. Moreover, the LASSO penalty is attached to the likelihood function for
simultaneous parameter estimation and variable selection.
Author: Ping-Yang Chen [aut, cre],
ChingChuan Chen [aut],
Chun-Hao Yang [aut],
Sheng-Mao Chang [aut]
Maintainer: Ping-Yang Chen <pychen.ping@gmail.com>
Diff between milr versions 0.1.0 dated 2016-07-14 and 0.2.0 dated 2017-01-10
DESCRIPTION | 12 +-- LICENSE | 4 - MD5 | 32 +++++----- NAMESPACE | 5 + R/DGP.R | 66 ++++++++++---------- R/RcppExports.R | 2 R/milr-package.R | 57 +++++++++-------- R/milr.R | 156 ++++++++++++++++++++++++++++++++++++------------- R/softmax.R | 86 +++++++++++++++++++-------- man/DGP.Rd | 54 ++++++++-------- man/fitted.milr.Rd |only man/fitted.softmax.Rd |only man/logit.Rd | 46 +++++++------- man/milr-package.Rd | 50 +++++++-------- man/milr.Rd | 40 +++++++----- man/predict.milr.Rd |only man/predict.softmax.Rd |only man/softmax.Rd | 6 + src/RcppExports.cpp | 26 ++++---- 19 files changed, 386 insertions(+), 256 deletions(-)
Title: Multiscale Clustering of Geometrical Network
Description: Co-Expression Network Analysis by adopting network embedding technique.
Author: Won-Min Song, Bin Zhang
Maintainer: Won-Min Song <wonmin1984@gmail.com>
Diff between MEGENA versions 1.3.5-2 dated 2016-10-25 and 1.3.6 dated 2017-01-10
DESCRIPTION | 8 +-- MD5 | 28 ++++++------- R/ClusteringPackage.R | 67 ++++++++++++++++++--------------- R/Combined_functions.R | 3 - R/ModuleHierarchyPlot.R | 11 ++--- R/ModulePlot.R | 14 ++---- R/NetworkSummary.R | 2 R/RcppExports.R | 2 inst/doc/MEGENA_pipeline_10062016.R | 6 +- inst/doc/MEGENA_pipeline_10062016.Rmd | 10 ++-- inst/doc/MEGENA_pipeline_10062016.html | 16 +++---- man/do.MEGENA.Rd | 2 man/plot_module.Rd | 3 - src/RcppExports.cpp | 10 ++-- vignettes/MEGENA_pipeline_10062016.Rmd | 10 ++-- 15 files changed, 99 insertions(+), 93 deletions(-)
Title: Data Supporting the 'VGAM' Package
Description: Data sets to accompany the VGAM package and
the book "Vector Generalized Linear and
Additive Models: With an Implementation in R" (Yee, 2015)
<DOI:10.1007/978-1-4939-2818-7>.
These are used to illustrate vector generalized
linear and additive models (VGLMs/VGAMs), and associated models
(Reduced-Rank VGLMs, Quadratic RR-VGLMs, Row-Column
Interaction Models, and constrained and unconstrained ordination
models in ecology).
Author: Thomas Yee [aut, cre, cph],
James Gray [dtc]
Maintainer: Thomas Yee <t.yee@auckland.ac.nz>
Diff between VGAMdata versions 1.0-2 dated 2016-05-31 and 1.0-3 dated 2017-01-10
DESCRIPTION | 8 ++-- MD5 | 90 ++++++++++++++++++++++++------------------------ NEWS | 15 +++++++- data/SardiniaHotels.rda |only data/bb.de.rda |binary data/bd.us.rda |binary data/belcap.rda |binary data/crashf.au.rda |binary data/crime.us.rda |binary data/datalist | 1 data/ecb06it.rda |binary data/ecb14it.rda |binary data/exam1.rda |binary data/fibre15.rda |binary data/fibre1dot5.rda |binary data/gala.rda |binary data/hued.rda |binary data/huie.rda |binary data/huse.rda |binary data/oly12.rda |binary data/pirates1.rda |binary data/pirates2.rda |binary data/prison.us.rda |binary data/profs.nz.rda |binary data/rainfall.rda |binary data/rugby.rda |binary data/rugby.ties.rda |binary data/students.tw.rda |binary data/trapO.rda |binary data/tube10.rda |binary data/ugss.rda |binary data/vtinpat.rda |binary data/wffc.indiv.rda |binary data/wffc.nc.rda |binary data/wffc.rda |binary data/wffc.teams.rda |binary data/xs.nz.rda |binary inst/CITATION | 4 +- man/DeLury.Rd | 4 +- man/SardiniaHotels.Rd |only man/pirates1.Rd | 4 +- man/pirates2.Rd | 2 - man/prison.us.Rd | 5 +- man/ugss.Rd | 4 +- man/wffc.P2star.Rd | 4 +- man/wffc.Rd | 4 +- man/xs.nz.Rd | 42 +++++++++++----------- 47 files changed, 102 insertions(+), 85 deletions(-)
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, PCA and correlation matrices, cluster analyses, scatter
plots, Likert scales, effects plots of regression models (including interaction
terms) and much more. This package supports labelled data.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.2.0 dated 2016-12-27 and 2.2.1 dated 2017-01-10
DESCRIPTION | 8 MD5 | 18 - NEWS | 10 NEWS.md | 12 R/sjPlotKfoldCV.R | 222 +++++++------- R/sjPlotLinreg.R | 25 - build/partial.rdb |binary man/sjPlot-package.Rd | 4 man/sjp.int.Rd | 726 ++++++++++++++++++++++++------------------------ man/sjp.lm.Rd | 742 +++++++++++++++++++++++++------------------------- 10 files changed, 892 insertions(+), 875 deletions(-)
Title: Number-Theoretic Functions
Description:
Provides number-theoretic functions for factorization, prime numbers,
twin primes, primitive roots, modular inverses, extended GCD, Farey
series and continuous fractions. Included are some divisor functions,
or Euler's Phi function and Egyptian fractions.
Author: Hans Werner Borchers
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between numbers versions 0.6-1 dated 2015-07-14 and 0.6-6 dated 2017-01-10
DESCRIPTION | 18 ++++++++++++------ MD5 | 21 +++++++++++++-------- NAMESPACE | 4 +++- NEWS | 16 ++++++++++++++++ R/contFrac.R | 40 ++++++++++++++++++++++++++++++++++++++++ R/divisors.R |only R/necklace.R |only R/primroot.R | 2 +- man/cf2num.Rd |only man/contFrac.Rd | 7 +++++-- man/divisors.Rd |only man/factorize.Rd | 2 +- man/necklace.Rd |only man/sigma.Rd | 2 +- 14 files changed, 92 insertions(+), 20 deletions(-)
Title: Nanosecond-Resolution Time for R
Description: Full 64-bit resolution date and time support with resolution up
to nanosecond granularity is provided, with easy transition to and from the
standard 'POSIXct' type.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between nanotime versions 0.0.1 dated 2016-12-16 and 0.1.0 dated 2017-01-10
ChangeLog | 56 ++++++++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 14 +++++-------- MD5 | 20 +++++++++++------- NAMESPACE | 1 R/nanotime.R | 44 +++++++++++++++++++++++++++++++--------- README.md | 22 +++++++++++++++----- build/partial.rdb |binary demo |only inst |only man/nanotime.Rd | 19 +++++++++++++---- tests/data.frame.R |only tests/simpleTests.R | 9 ++++++++ 12 files changed, 150 insertions(+), 35 deletions(-)
Title: Import, Plot and Analyze Bathymetric and Topographic Data
Description: Import xyz data from the NOAA (National Oceanic and Atmospheric Administration, <http://www.noaa.gov>), GEBCO (General Bathymetric Chart of the Oceans, <http://www.gebco.net>) and other sources, plot xyz data to prepare publication-ready figures, analyze xyz data to extract transects, get depth / altitude based on geographical coordinates, or calculate z-constrained least-cost paths.
Author: Eric Pante, Benoit Simon-Bouhet, and Jean-Olivier Irisson
Maintainer: Eric Pante <pante.eric@gmail.com>
Diff between marmap versions 0.9.5 dated 2015-12-10 and 0.9.6 dated 2017-01-10
DESCRIPTION | 12 +++++++----- MD5 | 40 ++++++++++++++++++++-------------------- R/as.bathy.R | 4 ++-- R/getNOAA.bathy.R | 2 +- build/vignette.rds |binary data/aleutians.rda |binary data/celt.rda |binary data/florida.rda |binary data/hawaii.rda |binary data/hawaii.sites.rda |binary data/irregular.rda |binary data/metallo.rda |binary data/nw.atlantic.coast.rda |binary data/nw.atlantic.rda |binary man/griddify.Rd | 2 +- man/irregular.Rd | 2 +- man/lc.dist.Rd | 4 ++-- man/marmap.Rd | 4 ++-- man/nw.atlantic.coast.Rd | 4 ++-- man/subsetBathy.Rd | 2 +- man/trans.mat.Rd | 8 ++++---- 21 files changed, 43 insertions(+), 41 deletions(-)
Title: DATRAS Trawl Database Web Services
Description: R interface to access the web services of the ICES (International
Council for the Exploration of the Sea) DATRAS trawl survey
database <https://datras.ices.dk/WebServices/Webservices.aspx>.
Author: Colin Millar [aut, cre],
Scott Large [aut],
Arni Magnusson [aut]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesDatras versions 1.0-0 dated 2016-08-04 and 1.2-0 dated 2017-01-10
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Title: Phase I Control Charts (with Emphasis on Distribution-Free
Methods)
Description: Statistical methods for retrospectively detecting changes in location and/or dispersion of univariate and multivariate variables. Data values are assumed to be independent, can be individual (one observation at each instant of time) or subgrouped (more than one observation at each instant of time). Control limits are computed, often using a permutation approach, so that a prescribed false alarm probability is guaranteed without making any parametric assumptions on the stable (in-control) distribution.
Author: Giovanna Capizzi and Guido Masarotto
Maintainer: Giovanna Capizzi <giovanna.capizzi@unipd.it>
Diff between dfphase1 versions 1.0.1 dated 2016-09-25 and 1.1.0 dated 2017-01-10
DESCRIPTION | 8 +-- MD5 | 36 ++++++++++------ NAMESPACE | 5 +- NEWS |only R/RcppExports.R | 10 ++++ R/mphase1.R |only R/rsp.R | 10 ++-- build/partial.rdb |binary data/Student.RData |only man/Student.Rd |only man/changepoint.Rd | 16 ++++--- man/colonscopy.Rd | 2 man/dfphase1-package.Rd | 26 +++++++----- man/mphase1-methods.Rd |only man/mphase1.Rd |only man/mshewhart.Rd | 10 +++- man/phase1Plot.Rd | 8 ++- man/rsp.Rd | 9 ++-- man/ryan.Rd | 4 - man/shewhart.Rd | 5 ++ src/RcppExports.cpp | 104 ++++++++++++++++++++++++++++++------------------ src/lars.cpp |only src/mphase1.cpp |only 23 files changed, 163 insertions(+), 90 deletions(-)
Title: Simplify the Creation of Choropleth Maps in R
Description: Choropleths are thematic maps where geographic regions, such as
states, are colored according to some metric, such as the number of people
who live in that state. This package simplifies this process by 1.
Providing ready-made functions for creating choropleths of common maps. 2.
Providing data and API connections to interesting data sources for making
choropleths. 3. Providing a framework for creating choropleths from
arbitrary shapefiles. 4. Overlaying those maps over reference maps from
Google Maps. Please see the vignettes for more details.
Author: Ari Lamstein <ari@lamsteinconsulting.com>[cre, aut],
Brian P Johnson <brian@pjohnson.info> [ctb, frontend animation code]
Maintainer: Ari Lamstein <ari@lamsteinconsulting.com>
Diff between choroplethr versions 3.5.2 dated 2016-03-30 and 3.5.3 dated 2017-01-10
choroplethr-3.5.2/choroplethr/build |only choroplethr-3.5.2/choroplethr/inst/doc |only choroplethr-3.5.2/choroplethr/vignettes |only choroplethr-3.5.3/choroplethr/DESCRIPTION | 19 +++----- choroplethr-3.5.3/choroplethr/MD5 | 47 ++------------------- choroplethr-3.5.3/choroplethr/NEWS | 5 ++ choroplethr-3.5.3/choroplethr/R/choropleth.R | 4 - choroplethr-3.5.3/choroplethr/R/startup_messages.R | 9 +--- choroplethr-3.5.3/choroplethr/README.md | 39 ----------------- 9 files changed, 24 insertions(+), 99 deletions(-)
Title: Easily Tidy Data with 'spread()' and 'gather()' Functions
Description: An evolution of 'reshape2'. It's designed specifically for data
tidying (not general reshaping or aggregating) and works well with
'dplyr' data pipelines.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyr versions 0.6.0 dated 2016-08-12 and 0.6.1 dated 2017-01-10
DESCRIPTION | 13 +++--- MD5 | 20 ++++----- NEWS.md | 7 +++ R/RcppExports.R | 2 R/utils.R | 4 - README.md | 86 ++++++++++++++++++++++-------------------- build/vignette.rds |binary inst/doc/tidy-data.html | 40 +++++++++---------- man/extract_numeric.Rd | 2 src/RcppExports.cpp | 34 ++++++++-------- tests/testthat/test-drop_na.R | 2 11 files changed, 113 insertions(+), 97 deletions(-)
Title: Tools for Reshaping Text
Description: Tools that can be used to reshape text data.
Author: Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textshape versions 0.2.0 dated 2016-12-31 and 1.0.0 dated 2017-01-10
DESCRIPTION | 10 - MD5 | 33 +++-- NAMESPACE | 3 NEWS | 11 + R/bind_list.R | 10 - R/bind_table.R | 9 - R/bind_vector.R | 8 - R/split_token.R | 2 R/tidy_list.R |only R/tidy_table.R |only R/tidy_vector.R |only README.md | 223 ++++++++++++++++++------------------- inst/CITATION | 8 - inst/figure/unnamed-chunk-15-1.png |only inst/figure/unnamed-chunk-7-1.png |only inst/figure/unnamed-chunk-8-1.png |only man/bind_list.Rd | 7 - man/bind_table.Rd | 6 man/bind_vector.Rd | 6 man/tidy_list.Rd |only man/tidy_table.Rd |only man/tidy_vector.Rd |only 22 files changed, 180 insertions(+), 156 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible toolset for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre],
Paul Nulty [ctb],
Kohei Watanabe [ctb],
Adam Obeng [ctb],
Haiyan Wang [ctb],
Benjamin Lauderdale [ctb],
Will Lowe [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
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Title: Exponential Integral and Incomplete Gamma Function
Description: The exponential integrals E_1(x), E_2(x), E_n(x) and
Ei(x), and the incomplete gamma function G(a, x) defined for
negative values of its first argument. The package also gives easy
access to the underlying C routines through an API; see the package
vignette for details. A test package included in sub-directory
example_API provides an implementation. C routines derived from the
GNU Scientific Library <https://www.gnu.org/software/gsl/>.
Author: Vincent Goulet [cre, aut],
Gerard Jungman [aut] (Original GSL code),
Brian Gough [aut] (Original GSL code),
Jeffrey A. Ryan [aut] (Package API),
Robert Gentleman [aut] (Parts of the R to C interface),
Ross Ihaka [aut] (Parts of the R to C interface),
R Core Team [aut] (Parts of the R to C interface),
R Foundation [aut] (Parts of the R to C interface)
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between expint versions 0.1-2 dated 2016-12-23 and 0.1-3 dated 2017-01-10
DESCRIPTION | 24 ++++++++++++------------ MD5 | 10 +++++----- build/partial.rdb |binary inst/NEWS.Rd | 17 +++++++++++++++++ inst/doc/expint.pdf |binary src/expint.c | 8 ++++---- 6 files changed, 38 insertions(+), 21 deletions(-)
Title: Automated Runs and Evaluations of Ecological Niche Models
Description: Automatically partitions data into evaluation bins, executes ecological niche models across a range of settings, and calculates a variety of evaluation statistics. Current version only implements ENMs with Maxent (Phillips et al. 2006)<doi:10.1016/j.ecolmodel.2005.03.026>.
Author: Robert Muscarella, Peter J. Galante, Mariano Soley-Guardia, Robert A. Boria, Jamie M. Kass, Maria Uriarte and Robert P. Anderson
Maintainer: Robert Muscarella <bob.muscarella@gmail.com>
Diff between ENMeval versions 0.2.1 dated 2016-01-04 and 0.2.2 dated 2017-01-10
DESCRIPTION | 12 +++--- MD5 | 45 +++++++++++++++--------- NAMESPACE | 2 - NEWS | 11 ++++++ R/ENMevaluate.R | 55 +++++++++++++++++++++--------- R/all.classes.R | 20 +++++------ R/calc.aicc.R | 47 ++++++++++++++----------- R/get.block.R | 14 +++++-- R/get.checkerboard1.R | 7 +++ R/get.checkerboard2.R | 8 +++- R/get.jackknife.R | 6 ++- R/get.randomkfold.R | 6 ++- R/get.user.R | 4 ++ R/tuning.R | 85 ++++++++++++++++++++++++----------------------- R/var.importance.R |only README.md |only build |only data/enmeval_results.rda |binary data/eval2.rda |only inst/doc |only man/ENMeval-package.Rd | 4 +- man/ENMevaluate.Rd | 24 +++++++++---- man/enmeval_results.Rd | 5 +- man/eval2.Rd |only man/var.importance.Rd |only vignettes |only 26 files changed, 224 insertions(+), 131 deletions(-)
Title: Platform for EDGAR Filing Management
Description: In the USA, firms file different forms with the U.S. Securities and
Exchange Commission (SEC) through EDGAR (Electronic Data Gathering, Analysis,
and Retrieval system). EDGAR automated system collects all the different
necessary filings and make it publicly available. Secondly, it validates
collected filings, then perform indexing and accepting of these submitted
forms. Investors, regulators, and researchers often require these forms for
various purposes. This package helps in data gathering, management, and
visualization in this regard. It downloads SEC EDGAR quarterly master
indexes, daily master indexes, and filings from SEC.org site and perform
sentiment analysis of these filing.
Author: Gunratan Lonare <lonare.gunratan@gmail.com>, Bharat Patil
<bharatspatil@gmail.com>
Maintainer: Gunratan Lonare <lonare.gunratan@gmail.com>
Diff between edgar versions 1.0.7 dated 2016-12-16 and 1.0.8 dated 2017-01-10
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/getDailyMaster.R | 17 ++++++++++------- R/getMasterIndex.R | 12 ++++++++---- man/getDailyMaster.Rd | 2 +- man/getMasterIndex.Rd | 4 ++-- 6 files changed, 30 insertions(+), 23 deletions(-)
Title: Manage Sub-Processes in R
Description: Create and handle multiple sub-processes in R, exchange
data over standard input and output streams, control their life cycle.
Author: Lukasz Bartnik [aut, cre]
Maintainer: Lukasz Bartnik <l.bartnik@gmail.com>
Diff between subprocess versions 0.7.4 dated 2016-11-29 and 0.8.0 dated 2017-01-10
subprocess-0.7.4/subprocess/src/is_something.c |only subprocess-0.7.4/subprocess/src/sub-linux.c |only subprocess-0.7.4/subprocess/src/sub-windows.c |only subprocess-0.7.4/subprocess/src/subprocess.c |only subprocess-0.7.4/subprocess/src/win-reader.c |only subprocess-0.7.4/subprocess/src/win-reader.h |only subprocess-0.8.0/subprocess/DESCRIPTION | 11 subprocess-0.8.0/subprocess/MD5 | 64 +- subprocess-0.8.0/subprocess/NAMESPACE | 7 subprocess-0.8.0/subprocess/NEWS.md |only subprocess-0.8.0/subprocess/R/readwrite.R | 99 +++- subprocess-0.8.0/subprocess/R/signals.R | 4 subprocess-0.8.0/subprocess/R/subprocess.R | 48 +- subprocess-0.8.0/subprocess/R/tests.R |only subprocess-0.8.0/subprocess/R/utils.R | 7 subprocess-0.8.0/subprocess/build/vignette.rds |binary subprocess-0.8.0/subprocess/inst/doc/intro.R | 58 +- subprocess-0.8.0/subprocess/inst/doc/intro.Rmd | 58 +- subprocess-0.8.0/subprocess/inst/doc/intro.html | 86 +-- subprocess-0.8.0/subprocess/man/readwrite.Rd | 51 +- subprocess-0.8.0/subprocess/man/signals.Rd | 2 subprocess-0.8.0/subprocess/man/terminating.Rd | 34 - subprocess-0.8.0/subprocess/man/tests.Rd |only subprocess-0.8.0/subprocess/src/Makevars | 2 subprocess-0.8.0/subprocess/src/Makevars.win | 2 subprocess-0.8.0/subprocess/src/config-os.h |only subprocess-0.8.0/subprocess/src/rapi.cc |only subprocess-0.8.0/subprocess/src/rapi.h |only subprocess-0.8.0/subprocess/src/sub-linux.cc |only subprocess-0.8.0/subprocess/src/sub-windows.cc |only subprocess-0.8.0/subprocess/src/subprocess.cc |only subprocess-0.8.0/subprocess/src/subprocess.h | 240 ++++++++-- subprocess-0.8.0/subprocess/src/tests.cc |only subprocess-0.8.0/subprocess/tests/testthat/helper-processes.R | 52 +- subprocess-0.8.0/subprocess/tests/testthat/signal-trap.sh |only subprocess-0.8.0/subprocess/tests/testthat/test-package.R |only subprocess-0.8.0/subprocess/tests/testthat/test-parameters.R | 38 + subprocess-0.8.0/subprocess/tests/testthat/test-readwrite.R | 57 ++ subprocess-0.8.0/subprocess/tests/testthat/test-signals.R |only subprocess-0.8.0/subprocess/tests/testthat/test-subprocess.R | 51 +- subprocess-0.8.0/subprocess/tests/testthat/test-termination.R | 47 + subprocess-0.8.0/subprocess/tests/testthat/test-utf8.R |only subprocess-0.8.0/subprocess/vignettes/intro.Rmd | 58 +- 43 files changed, 752 insertions(+), 324 deletions(-)