Title: Identify and Visualize Significantly Responsive Branches in a
Phylogenetic Tree
Description: Provides tools to identify and visualize branches in a phylogenetic tree that are significantly responsive to some intervention, taking as primary inputs a phylogenetic tree (of class phylo) and a data frame (or matrix) of corresponding tip (OTU) labels and p-values.
Author: John R. Stevens and Todd R. Jones
Maintainer: John R. Stevens <john.r.stevens@usu.edu>
Diff between SigTree versions 1.10.3 dated 2016-02-06 and 1.10.4 dated 2017-01-19
DESCRIPTION | 12 ++--- MD5 | 42 +++++++++--------- NAMESPACE | 7 ++- NEWS | 18 +++++++ R/SigTree.other.R | 66 ++++++++++++++++++++++++---- R/adonis.tree.R |only R/export.figtree.R | 26 ++++++----- R/export.inherit.R | 19 +++++--- R/p2.p1.R |only R/plotSigTree.R | 14 +++--- build/vignette.rds |binary inst/CITATION | 4 - inst/doc/SigTree.R | 72 +++++++++++++++++-------------- inst/doc/SigTree.Rnw | 95 +++++++++++++++++++++++++++++++---------- inst/doc/SigTree.pdf |binary man/SigTree-package.Rd | 8 +-- man/SigTree.other.Rd | 6 +- man/adonis.tree.Rd |only man/export.figtree.Rd | 11 +++- man/export.inherit.Rd | 11 +++- man/p2.p1.Rd |only man/plotSigTree.Rd | 16 +++++- vignettes/SigTree.Rnw | 95 +++++++++++++++++++++++++++++++---------- vignettes/sigsampleFigTree.jpg |binary 24 files changed, 369 insertions(+), 153 deletions(-)
Title: Generalized Dynamic Principal Components
Description: Functions to compute the Generalized Dynamic Principal Components
introduced in Peña and Yohai (2016) <DOI:10.1080/01621459.2015.1072542>.
Author: Daniel Peña <daniel.pena@uc3m.es>,
Ezequiel Smucler <ezequiels.90@gmail.com>,
Victor Yohai <vyohai@dm.uba.ar>
Maintainer: Ezequiel Smucler <ezequiels.90@gmail.com>
Diff between gdpc versions 1.0.0 dated 2016-11-10 and 1.0.1 dated 2017-01-19
DESCRIPTION | 8 ++++---- MD5 | 11 ++++++----- NEWS |only R/classGDPC.R | 34 +++++++++++++++++----------------- man/auto.gdpc.Rd | 2 +- man/gdpc-package.Rd | 4 ++-- src/gdpc_auxfunc.cpp | 12 ++++++------ 7 files changed, 36 insertions(+), 35 deletions(-)
Title: R Package for Geometric Shade Calculations
Description: Functions for calculating (1) shade height at a single point, (2) shaded proportion of a building facade; (3) a polygonal layer of shade footprints on the ground; and (4) Sky View Factor value at a single point. Typical inputs include a polygonal layer of buildings outline along with the height of each building, sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: converting polygons to line segments, finding segment azimuth, shifting segments by azimuth and distance, and constructing the footprint of a line of sight between an observer and the sun.
Author: Michael Dorman [aut, cre],
Evyatar Erell [ctb],
Itai Kloog [ctb],
Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between shadow versions 0.1.3 dated 2016-12-06 and 0.2.0 dated 2017-01-19
shadow-0.1.3/shadow/R/deg_rad.R |only shadow-0.2.0/shadow/DESCRIPTION | 11 ++++--- shadow-0.2.0/shadow/MD5 | 33 +++++++++++++---------- shadow-0.2.0/shadow/NAMESPACE | 3 ++ shadow-0.2.0/shadow/R/SVF.R | 2 - shadow-0.2.0/shadow/R/deg2rad.R |only shadow-0.2.0/shadow/R/rad2deg.R |only shadow-0.2.0/shadow/R/shadeFootprint.R | 2 - shadow-0.2.0/shadow/R/shadeHeight.R | 35 ++++++++++++------------- shadow-0.2.0/shadow/R/shadeImageWall.R |only shadow-0.2.0/shadow/R/shiftAz.R | 2 - shadow-0.2.0/shadow/R/sunLocation.R | 4 +- shadow-0.2.0/shadow/R/toSeg.R | 2 - shadow-0.2.0/shadow/inst/doc/introduction.Rmd | 14 +++++----- shadow-0.2.0/shadow/inst/doc/introduction.html | 31 ++++++++++++---------- shadow-0.2.0/shadow/man/deg2rad.Rd |only shadow-0.2.0/shadow/man/rad2deg.Rd |only shadow-0.2.0/shadow/man/shadeHeight.Rd | 12 ++++---- shadow-0.2.0/shadow/man/shadeImageWall.Rd |only shadow-0.2.0/shadow/man/toSeg.Rd | 2 - shadow-0.2.0/shadow/vignettes/introduction.Rmd | 14 +++++----- 21 files changed, 90 insertions(+), 77 deletions(-)
Title: Data and Functions for USA State and County Unemployment Data
Description: Contains data and visualization functions for USA unemployment
data. Data comes from the US Bureau of Labor Statistics (BLS). State data
is in ?df_state_unemployment and covers 2000-2013. County data is in
?df_county_unemployment and covers 1990-2013. Choropleth maps of the data
can be generated with ?state_unemployment_choropleth() and
?county_unemployment_choropleth() respectively.
Author: Ari Lamstein <ari@lamsteinconsulting.com>
Maintainer: Ari Lamstein <ari@lamsteinconsulting.com>
Diff between rUnemploymentData versions 1.0.0 dated 2015-01-04 and 1.1.0 dated 2017-01-19
rUnemploymentData-1.0.0/rUnemploymentData/build |only rUnemploymentData-1.0.0/rUnemploymentData/inst/doc |only rUnemploymentData-1.0.0/rUnemploymentData/vignettes |only rUnemploymentData-1.1.0/rUnemploymentData/DESCRIPTION | 23 ++---- rUnemploymentData-1.1.0/rUnemploymentData/MD5 | 38 +++------- rUnemploymentData-1.1.0/rUnemploymentData/NAMESPACE | 4 - rUnemploymentData-1.1.0/rUnemploymentData/R/county.R | 22 +++-- rUnemploymentData-1.1.0/rUnemploymentData/R/state.R | 17 ++-- rUnemploymentData-1.1.0/rUnemploymentData/README.md |only rUnemploymentData-1.1.0/rUnemploymentData/man/animated_county_unemployment_choropleth.Rd | 5 - rUnemploymentData-1.1.0/rUnemploymentData/man/animated_state_unemployment_choropleth.Rd | 5 - rUnemploymentData-1.1.0/rUnemploymentData/man/build_county_df.Rd | 3 rUnemploymentData-1.1.0/rUnemploymentData/man/build_state_df.Rd | 3 rUnemploymentData-1.1.0/rUnemploymentData/man/county_unemployment_choropleth.Rd | 13 +-- rUnemploymentData-1.1.0/rUnemploymentData/man/df_county_unemployment.Rd | 8 +- rUnemploymentData-1.1.0/rUnemploymentData/man/df_state_unemployment.Rd | 7 + rUnemploymentData-1.1.0/rUnemploymentData/man/get_county_unemployment_df.Rd | 5 - rUnemploymentData-1.1.0/rUnemploymentData/man/get_state_unemployment_df.Rd | 3 rUnemploymentData-1.1.0/rUnemploymentData/man/state_unemployment_choropleth.Rd | 13 +-- 19 files changed, 88 insertions(+), 81 deletions(-)
More information about rUnemploymentData at CRAN
Permanent link
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Education Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 1.2.0 dated 2016-12-14 and 1.3.0 dated 2017-01-19
DESCRIPTION | 8 +-- MD5 | 82 +++++++++++++++---------------- R/nagelkerke.r | 17 +++--- R/pairwiseDifferences.r | 21 ++++--- R/pairwiseMcnemar.r | 27 +++++++--- R/pairwiseMedianMatrix.r | 19 +++---- R/pairwiseMedianTest.r | 27 ++++++---- R/pairwiseNominalIndependence.r | 13 +++- R/pairwiseOrdinalIndependence.r | 17 +++--- R/pairwiseOrdinalMatrix.r | 19 +++---- R/pairwiseOrdinalPairedMatrix.r | 18 ++++-- R/pairwiseOrdinalPairedTest.r | 32 +++++++----- R/pairwiseOrdinalTest.r | 27 ++++++---- R/pairwisePermutationMatrix.r | 27 +++++----- R/pairwisePermutationSymmetry.r | 34 +++++++----- R/pairwisePermutationSymmetryMatrix.r | 20 ++++--- R/pairwisePermutationTest.r | 25 +++++---- R/pairwiseRobustMatrix.r | 19 +++---- R/pairwiseRobustTest.r | 27 ++++++---- R/pairwiseSignMatrix.r | 19 +++---- R/pairwiseSignTest.r | 28 ++++++---- R/plotPredy.r | 24 +++++---- man/nagelkerke.Rd | 2 man/pairwiseDifferences.Rd | 8 +-- man/pairwiseMcnemar.Rd | 21 +++++-- man/pairwiseMedianMatrix.Rd | 4 - man/pairwiseMedianTest.Rd | 16 +++--- man/pairwiseNominalIndependence.Rd | 13 +++- man/pairwiseOrdinalIndependence.Rd | 17 +++--- man/pairwiseOrdinalMatrix.Rd | 4 - man/pairwiseOrdinalPairedMatrix.Rd | 4 + man/pairwiseOrdinalPairedTest.Rd | 20 ++++--- man/pairwiseOrdinalTest.Rd | 16 +++--- man/pairwisePermutationMatrix.Rd | 12 ++-- man/pairwisePermutationSymmetry.Rd | 22 ++++---- man/pairwisePermutationSymmetryMatrix.Rd | 4 - man/pairwisePermutationTest.Rd | 14 +++-- man/pairwiseRobustMatrix.Rd | 4 - man/pairwiseRobustTest.Rd | 16 +++--- man/pairwiseSignMatrix.Rd | 4 - man/pairwiseSignTest.Rd | 16 +++--- man/plotPredy.Rd | 18 +++--- 42 files changed, 455 insertions(+), 330 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: José Pinheiro [aut] (S version),
Douglas Bates [aut] (up to 2007),
Saikat DebRoy [ctb] (up to 2002),
Deepayan Sarkar [ctb] (up to 2005),
EISPACK authors [ctb] (src/rs.f),
Siem Heisterkamp [ctb] (Author fixed sigma),
Bert Van Willigen [ctb] (Programmer fixed sigma),
R-core [aut, cre]
Maintainer: R-core <R-core@R-project.org>
Diff between nlme versions 3.1-128 dated 2016-05-10 and 3.1-129 dated 2017-01-19
nlme-3.1-128/nlme/tests/ss2.rda |only nlme-3.1-129/nlme/ChangeLog | 16 ++++++++++ nlme-3.1-129/nlme/DESCRIPTION | 10 +++--- nlme-3.1-129/nlme/MD5 | 42 +++++++++++++------------- nlme-3.1-129/nlme/NAMESPACE | 17 ++++++++++ nlme-3.1-129/nlme/R/corStruct.R | 32 ++++++++------------ nlme-3.1-129/nlme/R/gnls.R | 28 ++++++++--------- nlme-3.1-129/nlme/R/groupedData.R | 7 ++-- nlme-3.1-129/nlme/R/lme.R | 16 ++++------ nlme-3.1-129/nlme/R/nlme.R | 15 +++++---- nlme-3.1-129/nlme/R/pdMat.R | 24 ++++++--------- nlme-3.1-129/nlme/R/zzMethods.R | 48 +++++++++++++++++++++++++++++- nlme-3.1-129/nlme/TODO | 1 nlme-3.1-129/nlme/inst/CITATION | 2 - nlme-3.1-129/nlme/man/lmeObject.Rd | 6 ++- nlme-3.1-129/nlme/man/nlsList.Rd | 9 +++-- nlme-3.1-129/nlme/src/init.c | 3 - nlme-3.1-129/nlme/tests/data.frame.R | 17 ++++++++-- nlme-3.1-129/nlme/tests/lme.R | 16 +++++++++- nlme-3.1-129/nlme/tests/lme.Rout.save | 20 ++++++++++-- nlme-3.1-129/nlme/tests/nlme.R | 10 +++++- nlme-3.1-129/nlme/tests/sigma-fixed-etc.R | 25 +++++++++------ nlme-3.1-129/nlme/tests/ss2.rds |only 23 files changed, 242 insertions(+), 122 deletions(-)
Title: Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species
occurrence in dynamic landscapes, simulate future landscape occupation and
evaluate range expansion when new empty patches are available (e.g. as a
result of climate change).
Author: Frederico Mestre, Fernando Canovas, Ricardo Pita, Antonio Mira, Pedro
Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>
Diff between MetaLandSim versions 0.5.4 dated 2016-10-03 and 0.5.5 dated 2017-01-19
DESCRIPTION | 8 ++--- MD5 | 8 ++--- R/spom.R | 64 +++++++++++++++++++++++++++++++++++++++++++-- inst/doc/MetaLandSim.pdf |binary man/MetaLandSim-package.Rd | 4 +- 5 files changed, 72 insertions(+), 12 deletions(-)
Title: Test Set for Differential Equations
Description: Solvers and test set for stiff and non-stiff differential equations, and
differential algebraic equations.
Author: Karline Soetaert [aut, cre],
Jeff Cash [aut],
Francesca Mazzia [aut],
LAPACK authors [cph]
Maintainer: Karline Soetaert <karline.soetaert@nioz.nl>
Diff between deTestSet versions 1.1.3 dated 2016-12-06 and 1.1.5 dated 2017-01-19
DESCRIPTION | 14 ++++++------- MD5 | 34 +++++++++++++++---------------- R/functions.R | 2 - R/mebdfi.R | 13 +++++------- man/dopri5.Rd | 4 +-- src/Ex_nand.f | 12 +++++++---- src/Ex_twobit.f | 6 ++--- src/bimd.f | 58 ++++++++++++++++++++++++++++++++++++++++++++++++++---- src/bimda.f | 7 ++---- src/call_dopri.c | 2 - src/call_gam.c | 3 +- src/call_mebdfi.c | 1 src/cashkarp.f | 31 +++++++++++++++++----------- src/de.h | 2 - src/dopri6.f | 4 +-- src/dopri8.f | 8 +++---- src/gamd.f90 | 12 +++++------ src/mebdfi.f | 42 ++++++++++++++++++++++----------------- 18 files changed, 161 insertions(+), 94 deletions(-)
Title: Statistics About Bytes Contained in a File as a Circle Plot
Description: Shows statistics about bytes contained in a file
as a circle graph of deviations from mean in sigma increments.
The function can be useful for statistically analyze the content of files
in a glimpse: text files are shown as a green centered crown, compressed
and encrypted files should be shown as equally distributed variations with
a very low CV (sigma/mean), and other types of files can be classified between
these two categories depending on their text vs binary content, which can be
useful to quickly determine how information is stored inside them (databases,
multimedia files, etc).
Author: Roberto S. Galende [aut, cre]
Maintainer: Roberto S. Galende <roberto.s.galende@gmail.com>
Diff between bytescircle versions 1.0 dated 2016-11-16 and 1.1 dated 2017-01-19
DESCRIPTION | 12 +++--- MD5 | 18 ++++----- R/bytescircle.R | 86 +++++++++++++++++++++++++++++++++---------- build/vignette.rds |binary inst/doc/bytescircle.R | 2 - inst/doc/bytescircle.Rmd | 82 ++++++++++++++++++++++++++--------------- inst/doc/bytescircle.pdf |binary man/bytescircle.Rd | 21 ++++++++-- src/bytescircle_read_file_.c | 13 +++--- vignettes/bytescircle.Rmd | 82 ++++++++++++++++++++++++++--------------- 10 files changed, 208 insertions(+), 108 deletions(-)
Title: Search Contributed R Packages, Sort by Package
Description: Search contributed R packages, sort by package.
Author: Spencer Graves, Sundar Dorai-Raj, and Romain Francois
Maintainer: Spencer Graves <spencer.graves@prodsyse.com>
Diff between sos versions 1.3-9 dated 2016-06-21 and 1.4-1 dated 2017-01-19
DESCRIPTION | 10 +- MD5 | 14 ++-- R/findFn.R | 38 +++++------ R/print.findFn.R | 123 +++++++++++++++++++++--------------- build/vignette.rds |binary inst/brew/default/results.brew.html | 6 + inst/doc/sos.pdf |binary man/findFn.Rd | 2 8 files changed, 112 insertions(+), 81 deletions(-)
Title: Estimation of Overlapping in Empirical Distributions
Description: Functions for estimating the overlapping area of two or more empirical distributions (special unofficial edition).
Author: Massimiliano Pastore
Maintainer: Massimiliano Pastore <massimiliano.pastore@unipd.it>
Diff between overlapping versions 1.3 dated 2016-06-24 and 1.4.0 dated 2017-01-19
DESCRIPTION | 12 +++++----- MD5 | 12 +++++----- NAMESPACE | 2 - NEWS | 12 +++++++--- R/final.plot.R | 49 ++++++++++++++++++++++++++---------------- R/overlap.R | 62 +++++++++++++++++++++++++++++++++--------------------- man/final.plot.Rd | 16 ++++++------- 7 files changed, 98 insertions(+), 67 deletions(-)
Title: Add a Scale Bar to 'OpenStreetMap' Plots
Description: Functionality to handle and project lat-long coordinates, easily download background maps
and add a correct scale bar to 'OpenStreetMap' plots in any map projection.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between OSMscale versions 0.3.5 dated 2016-09-21 and 0.4.1 dated 2017-01-19
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS | 16 ++++++++++++++++ R/OSMscale-package.R | 3 ++- R/earthDist.R | 48 +++++++++++++++++++++++++++++++++++------------- R/pointsMap.R | 23 +++++++++++------------ R/scaleBar.R | 35 ++++++++++++++++++++--------------- README.md | 27 ++++++++++++++------------- man/OSMscale-package.Rd | 3 ++- man/earthDist.Rd | 33 ++++++++++++++++++++++++--------- man/pointsMap.Rd | 18 ++++++++---------- man/scaleBar.Rd | 28 +++++++++++++++------------- 12 files changed, 163 insertions(+), 103 deletions(-)
Title: Nonparametric and Stochastic Efficiency and Productivity
Analysis
Description: Provides a variety of tools for nonparametric and parametric efficiency measurement.
Author: Oleg Badunenko [aut, cre],
Yaryna Kolomiytseva [aut],
Pavlo Mozharovskyi [aut]
Maintainer: Oleg Badunenko <oleg.badunenko@port.ac.uk>
Diff between npsf versions 0.1.9 dated 2016-09-02 and 0.2.0 dated 2017-01-19
ChangeLog | 5 DESCRIPTION | 10 MD5 | 22 - R/npsf-internal.R | 657 ++++++++++++++++++++++++++++++------------------- R/print.summary.npsf.R | 43 +-- R/sf.R | 127 +++++---- R/teradial.R | 8 R/truncreg.R | 9 man/npsf-package.Rd | 12 man/truncreg.Rd | 9 src/nonradial.c | 58 ++++ src/radial.c | 62 ++++ 12 files changed, 682 insertions(+), 340 deletions(-)
Title: Non-Parametric Concordance Coefficient: A Non-Parametric
Concordance Test
Description: A non-parametric test for multi-observer concordance and
differences between concordances in (un)balanced data.
Author: Rowan Kuiper [cre, aut],
Remco Hoogenboezem [aut],
Sjoerd Huisman [ctb],
google-sparsehash@googlegroups.com [aut, cph] (Copyright by Google Inc.
as mentioned in inst/COPYRIGHTS, applies to all the files in the
src/densehash directory)
Maintainer: Rowan Kuiper <r.kuiper.emc@gmail.com>
Diff between nopaco versions 0.99.7 dated 2017-01-18 and 0.99.8 dated 2017-01-19
DESCRIPTION | 10 MD5 | 22 configure | 2997 +++++++++++++++++++----------- configure.ac | 2 configure.win |only man/coef-methods.Rd | 3 man/concordance.test.Rd | 3 man/convertionMethods.Rd | 7 man/get-methods.Rd | 1 man/getPsi-methods.Rd | 7 man/names-methods.Rd | 3 src/densehash/m4/ax_cxx_compile_stdcxx.m4 |only src/densehash/sparseconfig.h | 8 13 files changed, 2024 insertions(+), 1039 deletions(-)
Title: Add Even More Interactivity to Interactive Charts
Description: Like package 'manipulate' does for static graphics, this package
helps to easily add controls like sliders, pickers, checkboxes, etc. that
can be used to modify the input data or the parameters of an interactive
chart created with package 'htmlwidgets'.
Author: Francois Guillem [aut, cre],
RTE [cph],
JJ Allaire [ctb]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between manipulateWidget versions 0.4.0 dated 2017-01-05 and 0.5.0 dated 2017-01-19
manipulateWidget-0.4.0/manipulateWidget/NEWS |only manipulateWidget-0.5.0/manipulateWidget/DESCRIPTION | 21 manipulateWidget-0.5.0/manipulateWidget/MD5 | 44 - manipulateWidget-0.5.0/manipulateWidget/NAMESPACE | 4 manipulateWidget-0.5.0/manipulateWidget/NEWS.md |only manipulateWidget-0.5.0/manipulateWidget/R/combineWidgets.R | 209 ++++--- manipulateWidget-0.5.0/manipulateWidget/R/controls.R | 136 ++--- manipulateWidget-0.5.0/manipulateWidget/R/controlsUtils.R |only manipulateWidget-0.5.0/manipulateWidget/R/manipulateWidget.R | 267 +++++----- manipulateWidget-0.5.0/manipulateWidget/R/mwControlsUI.R | 32 - manipulateWidget-0.5.0/manipulateWidget/R/mwServer.R |only manipulateWidget-0.5.0/manipulateWidget/R/mwUI.R | 97 ++- manipulateWidget-0.5.0/manipulateWidget/R/staticImage.R |only manipulateWidget-0.5.0/manipulateWidget/inst/doc/manipulateWidgets.R | 43 + manipulateWidget-0.5.0/manipulateWidget/inst/doc/manipulateWidgets.Rmd | 68 ++ manipulateWidget-0.5.0/manipulateWidget/inst/doc/manipulateWidgets.html | 80 ++ manipulateWidget-0.5.0/manipulateWidget/inst/examples |only manipulateWidget-0.5.0/manipulateWidget/inst/htmlwidgets/combineWidgets.js | 23 manipulateWidget-0.5.0/manipulateWidget/man/combineWidgets.Rd | 23 manipulateWidget-0.5.0/manipulateWidget/man/manipulateWidget.Rd | 111 ++-- manipulateWidget-0.5.0/manipulateWidget/man/mwControlsUI.Rd | 15 manipulateWidget-0.5.0/manipulateWidget/man/mwSelect.Rd | 3 manipulateWidget-0.5.0/manipulateWidget/man/mwUI.Rd | 63 +- manipulateWidget-0.5.0/manipulateWidget/man/staticPlot.Rd |only manipulateWidget-0.5.0/manipulateWidget/vignettes/comparison.gif |only manipulateWidget-0.5.0/manipulateWidget/vignettes/dynamic_inputs.gif |only manipulateWidget-0.5.0/manipulateWidget/vignettes/example-kmeans.gif |only manipulateWidget-0.5.0/manipulateWidget/vignettes/manipulateWidgets.Rmd | 96 ++- 28 files changed, 890 insertions(+), 445 deletions(-)
More information about manipulateWidget at CRAN
Permanent link
Title: Fill Missing Values in Satellite Data
Description: Tools to fill missing values in satellite data and to develop new
gap-fill algorithms. The methods are tailored to data (images) observed
at equally-spaced points in time. The package is illustrated with MODIS
NDVI data.
Author: Florian Gerber
Maintainer: Florian Gerber <florian.gerber@math.uzh.ch>
Diff between gapfill versions 0.9.5 dated 2017-01-18 and 0.9.5-2 dated 2017-01-19
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NEWS | 5 ++++- 3 files changed, 11 insertions(+), 8 deletions(-)
More information about UncertainInterval at CRAN
Permanent link
Title: Taxonomic Information from Around the Web
Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
such as getting database specific taxonomic identifiers, verifying
species names, getting taxonomic hierarchies, fetching downstream and
upstream taxonomic names, getting taxonomic synonyms, converting
scientific to common names and vice versa, and more.
Author: Scott Chamberlain [aut, cre],
Eduard Szoecs [aut],
Zachary Foster [aut],
Carl Boettiger [ctb],
Karthik Ram [ctb],
Ignasi Bartomeus [ctb],
John Baumgartner [ctb],
James O'Donnell [ctb],
Jari Oksanen [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between taxize versions 0.8.0 dated 2016-12-16 and 0.8.4 dated 2017-01-19
DESCRIPTION | 40 +++--- LICENSE | 2 MD5 | 149 ++++++++++++----------- NAMESPACE | 23 +++ NEWS.md | 20 +++ R/children.R | 69 +++++++++- R/classification.R | 203 +++++++++++++++++++++++--------- R/comm2sci.R | 40 ++++-- R/downstream.R | 2 R/eol_pages.R | 44 ++++-- R/eol_search.R | 39 +++--- R/get_boldid.R | 6 R/get_colid.R | 6 R/get_eolid.R | 127 ++++++++++++-------- R/get_gbifid.R | 6 R/get_ids.R | 8 - R/get_natservid.R |only R/get_nbnid.R | 6 R/get_tolid.R | 6 R/get_tpsid.R | 6 R/get_tsn.R | 6 R/get_uid.R | 6 R/get_wormsid.R |only R/iucn_id.R | 4 R/rankagg.R | 6 R/sci2comm.R | 93 ++++++++++---- R/synonyms.R | 46 +++++-- R/taxize-package.R | 3 R/taxize_cite.R | 29 +++- R/upstream.R | 2 R/zzz.R | 9 + README.md | 26 ++-- inst/vign/name_cleaning.md | 87 ++++++++----- inst/vign/taxize_vignette.md | 90 +++++--------- man/children.Rd | 20 ++- man/classification.Rd | 110 +++++++++++------ man/comm2sci.Rd | 23 ++- man/downstream.Rd | 2 man/eol_pages.Rd | 42 +++--- man/eol_search.Rd | 31 ++-- man/eubon.Rd | 2 man/eubon_capabilities.Rd | 2 man/eubon_children.Rd | 2 man/eubon_hierarchy.Rd | 2 man/get_boldid.Rd | 10 + man/get_colid.Rd | 12 + man/get_eolid.Rd | 78 +++++++----- man/get_gbifid.Rd | 10 + man/get_ids.Rd | 12 + man/get_natservid.Rd |only man/get_nbnid.Rd | 10 + man/get_tolid.Rd | 12 + man/get_tpsid.Rd | 12 + man/get_tsn.Rd | 12 + man/get_uid.Rd | 12 + man/get_wormsid.Rd |only man/iucn_id.Rd | 4 man/rankagg.Rd | 4 man/sci2comm.Rd | 46 ++++--- man/synonyms.Rd | 25 ++- man/taxize-package.Rd | 3 man/taxize_cite.Rd | 8 - man/upstream.Rd | 2 tests/testthat/test-children.R |only tests/testthat/test-comm2sci.R | 9 - tests/testthat/test-get_gbifid.R | 2 tests/testthat/test-get_natservid.R |only tests/testthat/test-get_wormsid.R |only tests/testthat/test-gni_details.R | 2 tests/testthat/test-gni_parse.R | 2 tests/testthat/test-itis_downstream.R | 2 tests/testthat/test-itis_kingdomnames.R | 4 tests/testthat/test-itis_lsid.R | 4 tests/testthat/test-itis_taxrank.R | 4 tests/testthat/test-sci2comm.R | 5 tests/testthat/test-synonyms.R | 14 ++ tests/testthat/test-tnrs.R | 20 +-- tests/testthat/test-tp_summary.R | 2 tests/testthat/test-tp_synonyms.R | 2 79 files changed, 1148 insertions(+), 641 deletions(-)
Title: R Graphics as Microplots (Sparklines) in 'LaTeX', 'HTML',
'Excel'
Description: Prepare lists of R graphics files to be used as
microplots (sparklines) in tables in either 'LaTeX',
'HTML', or 'Excel' files. For 'LaTeX', use the
'Hmisc::latex' function or 'xtable::xtable' function with
'Sweave', 'knitr', 'rmarkdown', or 'Emacs' 'org-mode' to
construct 'latex' tabular environments which include the
graphs. For 'HTML' files, use either 'Emacs' 'org-mode' or the
'htmlTable::htmlTable' function to construct an 'HTML' file
containing tables which include the graphs. For 'Excel'
use on 'Windows', the file 'examples/irisExcel.xls' includes 'VBA'
code which brings the individual panels into individual
cells in the spreadsheet. Examples in the 'examples'
subdirectory and demos are shown with 'lattice' graphics,
'base' graphics, and 'ggplot2' graphics. Examples for 'LaTeX'
include 'Sweave' (both 'LaTeX'-style and 'Noweb'-style), 'knitr',
'emacs' 'org-mode', and 'rmarkdown' input files and their 'pdf'
output files. Examples for 'HTML' include 'org-mode' and 'Rmd'
input files and their webarchive 'HTML' output files. In
addition, the 'as.orgtable' function can display a
'data.frame' in an 'org-mode' document.
Author: Richard M. Heiberger, with contributions from Karen Byron and Nooreen Dabbish.
Maintainer: Richard M. Heiberger <rmh@temple.edu>
Diff between microplot versions 1.0-14 dated 2016-06-22 and 1.0-16 dated 2017-01-19
DESCRIPTION | 46 ++++--- MD5 | 25 ++-- build/partial.rdb |binary build/vignette.rds |binary demo/00Index | 4 demo/NTplot.r | 13 +- demo/boxplot.ggplot.r |only demo/bwplot.lattice.r |only demo/bwplot.r | 90 -------------- demo/iris.r | 13 +- demo/timeseries.r | 8 + inst/doc/rmhPoster.R | 272 ++++++++++++++++++++++---------------------- inst/doc/rmhPoster.pdf |binary inst/examples/irisExcel.xls |only man/microplot-package.Rd | 25 ++-- 15 files changed, 224 insertions(+), 272 deletions(-)
Title: Global Summary Daily Weather Data in R
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day (GSOD) weather data from
the from the USA National Climatic Data Center (NCDC) for use in R. All
units are converted from from United States Customary System (USCS) units to
International System of Units (SI). Stations may be individually checked for
number of missing days defined by the user, where stations with too many
missing observations are omitted. Only stations with valid reported latitude
and longitude values are permitted in the final data. Additional useful
variables, saturation vapour pressure (es), actual vapour pressure (ea) and
relative humidity are calculated from the original data and included in the
final data set. The resulting data include station identification
information, state, country, latitude, longitude, elevation, weather
observations and associated flags. Data may be automatically saved to disk.
File output may be returned as a comma-separated values (CSV) or GeoPackage
(GPKG) file. Additional data are included with this R package: a list of
elevation values for stations between -60 and 60 degrees latitude derived
from the Shuttle Radar Topography Measuring Mission (SRTM). For information
on the GSOD data from NCDC, please see the GSOD readme.txt file available
from, <http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre],
Tomislav Hengl [aut],
Andrew Nelson [aut]
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 0.1.9 dated 2016-07-15 and 1.0.0 dated 2017-01-19
GSODR-0.1.9/GSODR/data/stations.rda |only GSODR-0.1.9/GSODR/man/stations.Rd |only GSODR-1.0.0/GSODR/DESCRIPTION | 92 -- GSODR-1.0.0/GSODR/LICENSE |only GSODR-1.0.0/GSODR/MD5 | 52 - GSODR-1.0.0/GSODR/NAMESPACE | 7 GSODR-1.0.0/GSODR/NEWS.md | 255 +++--- GSODR-1.0.0/GSODR/R/GSODR.R |only GSODR-1.0.0/GSODR/R/data.R | 79 - GSODR-1.0.0/GSODR/R/get_GSOD.R | 1048 ++++++++++++------------- GSODR-1.0.0/GSODR/R/get_station_list.R |only GSODR-1.0.0/GSODR/R/nearest_stations.R |only GSODR-1.0.0/GSODR/R/process_gz.R |only GSODR-1.0.0/GSODR/R/reformat_GSOD.R |only GSODR-1.0.0/GSODR/README.md | 870 ++++++++++++++++---- GSODR-1.0.0/GSODR/build |only GSODR-1.0.0/GSODR/data/SRTM_GSOD_elevation.rda |only GSODR-1.0.0/GSODR/data/country_list.rda |binary GSODR-1.0.0/GSODR/inst/CITATION | 7 GSODR-1.0.0/GSODR/inst/doc |only GSODR-1.0.0/GSODR/inst/paper |only GSODR-1.0.0/GSODR/man/GSODR.Rd |only GSODR-1.0.0/GSODR/man/SRTM_GSOD_elevation.Rd |only GSODR-1.0.0/GSODR/man/country_list.Rd | 15 GSODR-1.0.0/GSODR/man/get_GSOD.Rd | 347 ++++---- GSODR-1.0.0/GSODR/man/get_station_list.Rd |only GSODR-1.0.0/GSODR/man/nearest_stations.Rd |only GSODR-1.0.0/GSODR/man/reformat_GSOD.Rd |only GSODR-1.0.0/GSODR/tests |only GSODR-1.0.0/GSODR/vignettes |only 30 files changed, 1653 insertions(+), 1119 deletions(-)