Title: Time Series Regression
Description: Time series regression. The dyn class interfaces ts,
irts(), zoo() and zooreg() time series classes to lm(), glm(),
loess(), quantreg::rq(), MASS::rlm(), MCMCpack::MCMCregress(),
quantreg::rq(), randomForest::randomForest() and other regression
functions allowing those functions to be used with time series
including specifications that may contain lags, diffs and
missing values.
Author: G. Grothendieck
Maintainer: M. Leeds <markleeds2@gmail.com>
Diff between dyn versions 0.2-9.2 dated 2016-12-14 and 0.2-9.3 dated 2017-02-08
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 7 +++++++ R/model.frame.dyn.R | 4 ++-- 4 files changed, 16 insertions(+), 9 deletions(-)
Title: Import Articles from 'Factiva' Using the 'tm' Text Mining
Framework
Description: Provides a 'tm' Source to create corpora from
articles exported from the Dow Jones 'Factiva' content provider as
XML or HTML files. It is able to read both text content and meta-data
information (including source, date, title, author, subject,
geographical coverage, company, industry, and various
provider-specific fields).
Author: Milan Bouchet-Valat [aut, cre],
Grigorij Ljubownikow [ctb]
Maintainer: Milan Bouchet-Valat <nalimilan@club.fr>
Diff between tm.plugin.factiva versions 1.5 dated 2014-07-05 and 1.6 dated 2017-02-08
DESCRIPTION | 21 +++++++++++---------- MD5 | 8 ++++---- NEWS | 4 ++++ R/FactivaSource.R | 2 +- man/FactivaSource.Rd | 18 ++++++++++++------ 5 files changed, 32 insertions(+), 21 deletions(-)
More information about tm.plugin.factiva at CRAN
Permanent link
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement complex
random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an
efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.7.7 dated 2017-02-01 and 1.7.8 dated 2017-02-08
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 8 ++++++++ inst/include/cppad/example/cppad_eigen.hpp | 26 +++++++++++++++++++++----- inst/include/cppad/local/ad.hpp | 3 +++ inst/include/cppad/local/ad_ctor.hpp | 24 ++++++++++++++++++++++++ inst/include/tmbutils/density.hpp | 2 +- 7 files changed, 67 insertions(+), 16 deletions(-)
Title: Interface for the 'Wildbook' Wildlife Data Management Framework
Description: Provides an interface with the 'Wildbook' mark-recapture ecological database framework. It
helps users to pull data from the 'Wildbook' framework and format data for further analysis
with mark-recapture applications like 'Program MARK' (which can be accessed via the 'RMark' package in 'R').
Further information on the 'Wildbook' framework is available at: <http://www.wildbook.org/doku.php>.
Author: Simon Bonner [aut, cre],
Xinxin Huang [aut]
Maintainer: Simon Bonner <sbonner6@uwo.ca>
Diff between RWildbook versions 0.9.1 dated 2016-12-27 and 0.9.2 dated 2017-02-08
DESCRIPTION | 8 MD5 | 20 +- R/WBsearchURL.R | 9 R/searchWB.R | 7 inst/doc/RWildbook_demo1_vignette.R | 4 inst/doc/RWildbook_demo1_vignette.Rmd | 4 inst/doc/RWildbook_demo1_vignette.html | 8 inst/doc/RWildbook_demo2_vignette.html | 6 man/WBsearchURL.Rd | 44 ++-- man/searchWB.Rd | 314 ++++++++++++++++----------------- vignettes/RWildbook_demo1_vignette.Rmd | 4 11 files changed, 219 insertions(+), 209 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible toolset for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre],
Kohei Watanabe [ctb],
Paul Nulty [ctb],
Adam Obeng [ctb],
Haiyan Wang [ctb],
Benjamin Lauderdale [ctb],
Will Lowe [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.9.9-17 dated 2017-01-27 and 0.9.9-22 dated 2017-02-08
quanteda-0.9.9-17/quanteda/src/dist_parallel.cpp |only quanteda-0.9.9-17/quanteda/src/fcm.cpp |only quanteda-0.9.9-22/quanteda/DESCRIPTION | 12 quanteda-0.9.9-22/quanteda/MD5 | 113 ++--- quanteda-0.9.9-22/quanteda/NAMESPACE | 3 quanteda-0.9.9-22/quanteda/NEWS.md | 19 quanteda-0.9.9-22/quanteda/R/RcppExports.R | 28 - quanteda-0.9.9-22/quanteda/R/convert.R | 4 quanteda-0.9.9-22/quanteda/R/dfm.R | 16 quanteda-0.9.9-22/quanteda/R/dfm_lookup.R | 7 quanteda-0.9.9-22/quanteda/R/dictionaries-deprecated.R | 1 quanteda-0.9.9-22/quanteda/R/dictionaries.R | 226 +++++----- quanteda-0.9.9-22/quanteda/R/fcm.R | 24 - quanteda-0.9.9-22/quanteda/R/kwic2.R | 3 quanteda-0.9.9-22/quanteda/R/phrases.R | 4 quanteda-0.9.9-22/quanteda/R/textstat_keyness.R | 70 ++- quanteda-0.9.9-22/quanteda/R/tokens.R | 78 ++- quanteda-0.9.9-22/quanteda/R/tokens_compound.R | 37 - quanteda-0.9.9-22/quanteda/R/tokens_lookup.R | 47 +- quanteda-0.9.9-22/quanteda/R/tokens_ngrams.R | 18 quanteda-0.9.9-22/quanteda/R/tokens_select.R | 3 quanteda-0.9.9-22/quanteda/R/zzz.R | 5 quanteda-0.9.9-22/quanteda/README.md | 22 quanteda-0.9.9-22/quanteda/inst/doc/LitVignette.html | 5 quanteda-0.9.9-22/quanteda/inst/doc/plotting.html | 6 quanteda-0.9.9-22/quanteda/inst/doc/quickstart.R | 5 quanteda-0.9.9-22/quanteda/inst/doc/quickstart.Rmd | 5 quanteda-0.9.9-22/quanteda/inst/doc/quickstart.html | 29 - quanteda-0.9.9-22/quanteda/man/fcm.Rd | 8 quanteda-0.9.9-22/quanteda/man/keyness.Rd | 4 quanteda-0.9.9-22/quanteda/man/phrasetotoken.Rd | 4 quanteda-0.9.9-22/quanteda/man/textstat_keyness.Rd | 17 quanteda-0.9.9-22/quanteda/man/tokens_compound.Rd | 4 quanteda-0.9.9-22/quanteda/man/tokens_hashed_recompile.Rd |only quanteda-0.9.9-22/quanteda/man/tokens_lookup.Rd | 5 quanteda-0.9.9-22/quanteda/src/RcppExports.cpp | 96 ++-- quanteda-0.9.9-22/quanteda/src/dev.h | 7 quanteda-0.9.9-22/quanteda/src/dist_mt.cpp |only quanteda-0.9.9-22/quanteda/src/fcm_mt.cpp |only quanteda-0.9.9-22/quanteda/src/quanteda.h | 54 +- quanteda-0.9.9-22/quanteda/src/sequences_mt.cpp | 21 quanteda-0.9.9-22/quanteda/src/tokens_compound_mt.cpp |only quanteda-0.9.9-22/quanteda/src/tokens_detect_mt.cpp | 15 quanteda-0.9.9-22/quanteda/src/tokens_lookup_mt.cpp | 112 +++- quanteda-0.9.9-22/quanteda/src/tokens_match_mt.cpp |only quanteda-0.9.9-22/quanteda/src/tokens_ngrams_mt.cpp | 34 - quanteda-0.9.9-22/quanteda/src/tokens_recompile_mt.cpp |only quanteda-0.9.9-22/quanteda/src/tokens_replace_mt.cpp | 41 - quanteda-0.9.9-22/quanteda/src/tokens_select_mt.cpp | 36 - quanteda-0.9.9-22/quanteda/tests/data/dictionaries/mary.lc3 | 10 quanteda-0.9.9-22/quanteda/tests/testthat/test-convert.R | 23 + quanteda-0.9.9-22/quanteda/tests/testthat/test-corpus-compress.R | 1 quanteda-0.9.9-22/quanteda/tests/testthat/test-dfm.R | 30 + quanteda-0.9.9-22/quanteda/tests/testthat/test-dfm_lookup.R | 9 quanteda-0.9.9-22/quanteda/tests/testthat/test-fcm.R | 78 ++- quanteda-0.9.9-22/quanteda/tests/testthat/test-textstat_keyness.R | 40 + quanteda-0.9.9-22/quanteda/tests/testthat/test-tokens.R | 10 quanteda-0.9.9-22/quanteda/tests/testthat/test-tokens_compound.R | 23 - quanteda-0.9.9-22/quanteda/tests/testthat/test-tokens_hashed_recompile.R |only quanteda-0.9.9-22/quanteda/tests/testthat/test-tokens_lookup.R | 45 + quanteda-0.9.9-22/quanteda/tests/testthat/test-tokens_select.R | 1 quanteda-0.9.9-22/quanteda/vignettes/quickstart.Rmd | 5 62 files changed, 968 insertions(+), 555 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is available, as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with 'RStudio' and 'knitr' including generation of R markdown instructions for interpretative output.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.5.3 dated 2017-01-02 and 3.5.5 dated 2017-02-08
lessR-3.5.3/lessR/man/img |only lessR-3.5.5/lessR/DESCRIPTION | 8 lessR-3.5.5/lessR/MD5 | 175 ++++---- lessR-3.5.5/lessR/NAMESPACE | 3 lessR-3.5.5/lessR/NEWS | 56 ++ lessR-3.5.5/lessR/R/ANOVA.R | 27 - lessR-3.5.5/lessR/R/ANOVAz1.R | 14 lessR-3.5.5/lessR/R/ANOVAz2.R | 6 lessR-3.5.5/lessR/R/BarChart.R | 80 ++- lessR-3.5.5/lessR/R/BoxPlot.R | 87 ++-- lessR-3.5.5/lessR/R/Correlation.R | 4 lessR-3.5.5/lessR/R/CountAll.R | 5 lessR-3.5.5/lessR/R/Density.R | 134 ++++-- lessR-3.5.5/lessR/R/Help.R | 9 lessR-3.5.5/lessR/R/Histogram.R | 107 +++-- lessR-3.5.5/lessR/R/LineChart.R | 80 ++- lessR-3.5.5/lessR/R/Logit.R | 38 + lessR-3.5.5/lessR/R/Model.R | 4 lessR-3.5.5/lessR/R/PieChart.R | 12 lessR-3.5.5/lessR/R/Plot.R | 600 +++++++++++++---------------- lessR-3.5.5/lessR/R/Read.R | 16 lessR-3.5.5/lessR/R/Regression.R | 49 +- lessR-3.5.5/lessR/R/SummaryStats.R | 8 lessR-3.5.5/lessR/R/VariableLabels.R | 19 lessR-3.5.5/lessR/R/bc.data.frame.R | 56 ++ lessR-3.5.5/lessR/R/bc.zmain.R | 32 + lessR-3.5.5/lessR/R/corCFA.R | 4 lessR-3.5.5/lessR/R/corProp.R | 4 lessR-3.5.5/lessR/R/corReflect.R | 4 lessR-3.5.5/lessR/R/corReorder.R | 4 lessR-3.5.5/lessR/R/corScree.R | 24 - lessR-3.5.5/lessR/R/cr.data.frame.R | 10 lessR-3.5.5/lessR/R/dp.zmain.R | 30 - lessR-3.5.5/lessR/R/hst.zmain.R | 24 - lessR-3.5.5/lessR/R/lc.zmain.R | 10 lessR-3.5.5/lessR/R/logit.z4Pred.R | 16 lessR-3.5.5/lessR/R/pc.zmain.R | 2 lessR-3.5.5/lessR/R/plt.by.zlegend.R | 23 - lessR-3.5.5/lessR/R/plt.zbad.R | 19 lessR-3.5.5/lessR/R/plt.zlegend.R | 18 lessR-3.5.5/lessR/R/plt.zmain.R | 522 ++++++++++++++++--------- lessR-3.5.5/lessR/R/prob.norm.R | 10 lessR-3.5.5/lessR/R/prob.tcut.R | 24 - lessR-3.5.5/lessR/R/reg.z3dnResidual.R | 10 lessR-3.5.5/lessR/R/reg.z3resfitResidual.R | 18 lessR-3.5.5/lessR/R/reg.z5Plot.R | 34 + lessR-3.5.5/lessR/R/reg.zRmd.R | 4 lessR-3.5.5/lessR/R/regPlot.R | 8 lessR-3.5.5/lessR/R/simCImean.R | 8 lessR-3.5.5/lessR/R/simCLT.R | 16 lessR-3.5.5/lessR/R/simFlips.R | 8 lessR-3.5.5/lessR/R/simMeans.R | 10 lessR-3.5.5/lessR/R/ss.zfactor.R | 16 lessR-3.5.5/lessR/R/theme.R | 376 +++++++----------- lessR-3.5.5/lessR/R/tt.z1graph.R | 5 lessR-3.5.5/lessR/R/tt.z1group.R | 30 - lessR-3.5.5/lessR/R/tt.z2graph.R | 15 lessR-3.5.5/lessR/R/tt.z2group.R | 71 +-- lessR-3.5.5/lessR/R/ttest.R | 62 +- lessR-3.5.5/lessR/R/ttestPower.R | 4 lessR-3.5.5/lessR/R/ttp2zgraph.R | 8 lessR-3.5.5/lessR/R/zzz.R | 134 +++--- lessR-3.5.5/lessR/man/ANOVA.Rd | 6 lessR-3.5.5/lessR/man/BarChart.Rd | 104 ++--- lessR-3.5.5/lessR/man/BoxPlot.Rd | 69 +-- lessR-3.5.5/lessR/man/Correlation.Rd | 6 lessR-3.5.5/lessR/man/Density.Rd | 111 ++--- lessR-3.5.5/lessR/man/Histogram.Rd | 121 +++-- lessR-3.5.5/lessR/man/LineChart.Rd | 74 +-- lessR-3.5.5/lessR/man/Logit.Rd | 8 lessR-3.5.5/lessR/man/PieChart.Rd | 57 +- lessR-3.5.5/lessR/man/Plot.Rd | 377 ++++++++---------- lessR-3.5.5/lessR/man/Regression.Rd | 8 lessR-3.5.5/lessR/man/SummaryStats.Rd | 7 lessR-3.5.5/lessR/man/corCFA.Rd | 6 lessR-3.5.5/lessR/man/corProp.Rd | 6 lessR-3.5.5/lessR/man/corReflect.Rd | 6 lessR-3.5.5/lessR/man/corReorder.Rd | 6 lessR-3.5.5/lessR/man/corScree.Rd | 8 lessR-3.5.5/lessR/man/prob.norm.Rd | 12 lessR-3.5.5/lessR/man/prob.tcut.Rd | 8 lessR-3.5.5/lessR/man/regPlot.Rd | 6 lessR-3.5.5/lessR/man/simCImean.Rd | 10 lessR-3.5.5/lessR/man/simCLT.Rd | 10 lessR-3.5.5/lessR/man/simFlips.Rd | 10 lessR-3.5.5/lessR/man/simMeans.Rd | 10 lessR-3.5.5/lessR/man/theme.Rd | 53 +- lessR-3.5.5/lessR/man/ttest.Rd | 12 lessR-3.5.5/lessR/man/ttestPower.Rd | 6 89 files changed, 2372 insertions(+), 1959 deletions(-)
Title: Convert Spatial Grids to Polygons
Description: Converts a spatial object from class SpatialGridDataFrame to
SpatialPolygonsDataFrame.
Author: Jason C. Fisher [aut, cre]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between Grid2Polygons versions 0.1-5 dated 2015-02-20 and 0.1.6 dated 2017-02-08
Grid2Polygons-0.1-5/Grid2Polygons/NEWS |only Grid2Polygons-0.1-5/Grid2Polygons/inst/doc |only Grid2Polygons-0.1.6/Grid2Polygons/DESCRIPTION | 24 - Grid2Polygons-0.1.6/Grid2Polygons/MD5 | 15 Grid2Polygons-0.1.6/Grid2Polygons/NAMESPACE | 13 Grid2Polygons-0.1.6/Grid2Polygons/NEWS.md |only Grid2Polygons-0.1.6/Grid2Polygons/R/Grid2Polygons.R | 272 +++++++++++------ Grid2Polygons-0.1.6/Grid2Polygons/R/zzz.R |only Grid2Polygons-0.1.6/Grid2Polygons/README.md |only Grid2Polygons-0.1.6/Grid2Polygons/inst/CITATION |only Grid2Polygons-0.1.6/Grid2Polygons/inst/misc |only Grid2Polygons-0.1.6/Grid2Polygons/man/Grid2Polygons.Rd | 155 ++++----- 12 files changed, 285 insertions(+), 194 deletions(-)
Title: Mosaic Plots in the 'ggplot2' Framework
Description: Mosaic plots in the 'ggplot2' framework. Mosaic plot functionality
is provided in a single 'ggplot2' layer by calling the geom 'mosaic'.
Author: Haley Jeppson [aut, cre],
Heike Hofmann [aut],
Di Cook [aut],
Hadley Wickham [ctb]
Maintainer: Haley Jeppson <hjeppson@iastate.edu>
Diff between ggmosaic versions 0.1.1 dated 2016-12-29 and 0.1.2 dated 2017-02-08
ggmosaic-0.1.1/ggmosaic/man/is.product.Rd |only ggmosaic-0.1.1/ggmosaic/man/scale_product.Rd |only ggmosaic-0.1.1/ggmosaic/man/set.separators.Rd |only ggmosaic-0.1.2/ggmosaic/DESCRIPTION | 6 ggmosaic-0.1.2/ggmosaic/MD5 | 34 - ggmosaic-0.1.2/ggmosaic/NAMESPACE | 14 ggmosaic-0.1.2/ggmosaic/NEWS.md |only ggmosaic-0.1.2/ggmosaic/R/geom-mosaic.r | 12 ggmosaic-0.1.2/ggmosaic/R/geom2plotly.R | 5 ggmosaic-0.1.2/ggmosaic/R/scale-product.R | 120 ++++-- ggmosaic-0.1.2/ggmosaic/R/stat-mosaic.r | 347 ++++-------------- ggmosaic-0.1.2/ggmosaic/README.md | 1 ggmosaic-0.1.2/ggmosaic/inst/doc/ggmosaic.R | 16 ggmosaic-0.1.2/ggmosaic/inst/doc/ggmosaic.Rmd | 43 -- ggmosaic-0.1.2/ggmosaic/inst/doc/ggmosaic.html | 59 --- ggmosaic-0.1.2/ggmosaic/inst/nhanes.R | 6 ggmosaic-0.1.2/ggmosaic/man/geom_mosaic.Rd | 12 ggmosaic-0.1.2/ggmosaic/man/product.Rd | 15 ggmosaic-0.1.2/ggmosaic/man/scale_productlist.Rd |only ggmosaic-0.1.2/ggmosaic/man/scale_type.productlist.Rd |only ggmosaic-0.1.2/ggmosaic/vignettes/ggmosaic.Rmd | 43 -- 21 files changed, 265 insertions(+), 468 deletions(-)
Title: Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Description: Comprehensive open-source toolbox for analysing Spatial Point Patterns. Focused mainly on two-dimensional point patterns, including multitype/marked points, in any spatial region. Also supports three-dimensional point patterns, space-time point patterns in any number of dimensions, point patterns on a linear network, and patterns of other geometrical objects. Supports spatial covariate data such as pixel images.
Contains over 2000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference.
Data types include point patterns, line segment patterns, spatial windows, pixel images, tessellations, and linear networks.
Exploratory methods include quadrat counts, K-functions and their simulation envelopes, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics, and kernel estimates of covariate effects. Formal hypothesis tests of random pattern (chi-squared, Kolmogorov-Smirnov, Diggle-Cressie-Loosmore-Ford, Dao-Genton) and tests for covariate effects (Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov) are also supported.
Parametric models can be fitted to point pattern data using the functions ppm(), kppm(), slrm(), dppm() similar to glm(). Types of models include Poisson, Gibbs and Cox point processes, Neyman-Scott cluster processes, and determinantal point processes. Models may involve dependence on covariates, inter-point interaction, cluster formation and dependence on marks. Models are fitted by maximum likelihood, logistic regression, minimum contrast, and composite likelihood methods.
A model can be fitted to a list of point patterns (replicated point pattern data) using the function mppm(). The model can include random effects and fixed effects depending on the experimental design, in addition to all the features listed above.
Fitted point process models can be simulated, automatically. Formal hypothesis tests of a fitted model are supported (likelihood ratio test, analysis of deviance, Monte Carlo tests) along with basic tools for model selection (stepwise(), AIC()). Tools for validating the fitted model include simulation envelopes, residuals, residual plots and Q-Q plots, leverage and influence diagnostics, partial residuals, and added variable plots.
Author: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>,
Rolf Turner <r.turner@auckland.ac.nz>
and Ege Rubak <rubak@math.aau.dk>,
with substantial contributions of code by
Kasper Klitgaard Berthelsen;
Ottmar Cronie;
Yongtao Guan;
Ute Hahn;
Abdollah Jalilian;
Marie-Colette van Lieshout;
Tuomas Rajala;
Suman Rakshit;
Dominic Schuhmacher;
Rasmus Waagepetersen;
and Hangsheng Wang.
Additional contributions
by M. Adepeju;
C. Anderson;
Q.W. Ang;
M. Austenfeld;
S. Azaele;
M. Baddeley;
C. Beale;
M. Bell;
R. Bernhardt;
T. Bendtsen;
A. Bevan;
B. Biggerstaff;
A. Bilgrau;
L. Bischof;
C. Biscio;
R. Bivand;
J.M. Blanco Moreno;
F. Bonneu;
J. Burgos;
S. Byers;
Y.M. Chang;
J.B. Chen;
I. Chernayavsky;
Y.C. Chin;
B. Christensen;
J.-F. Coeurjolly;
K. Colyvas;
R. Corria Ainslie;
M. de la Cruz;
P. Dalgaard;
M. D'Antuono;
S. Das;
T. Davies;
P.J. Diggle;
P. Donnelly;
I. Dryden;
S. Eglen;
A. El-Gabbas;
B. Fandohan;
O. Flores;
E.D. Ford;
P. Forbes;
S. Frank;
J. Franklin;
N. Funwi-Gabga;
O. Garcia;
A. Gault;
J. Geldmann;
M. Genton;
S. Ghalandarayeshi;
J. Gilbey;
J. Goldstick;
P. Grabarnik;
C. Graf;
U. Hahn;
A. Hardegen;
M.B. Hansen;
M. Hazelton;
J. Heikkinen;
M. Hering;
M. Herrmann;
P. Hewson;
K. Hingee;
K. Hornik;
P. Hunziker;
J. Hywood;
R. Ihaka;
C. Icos;
A. Jammalamadaka;
R. John-Chandran;
D. Johnson;
M. Khanmohammadi;
R. Klaver;
P. Kovesi;
M. Kuhn;
J. Laake;
F. Lavancier;
T. Lawrence;
R.A. Lamb;
J. Lee;
G.P. Leser;
H.T. Li;
G. Limitsios;
A. Lister;
B. Madin;
M. Maechler;
J. Marcus;
K. Marchikanti;
R. Mark;
J. Mateu;
P. McCullagh;
U. Mehlig;
F. Mestre;
S. Meyer;
X.C. Mi;
L. De Middeleer;
R.K. Milne;
E. Miranda;
J. Moller;
M. Moradi;
V. Morera Pujol;
E. Mudrak;
G.M. Nair;
N. Najari;
N. Nava;
L.S. Nielsen;
F. Nunes;
J.R. Nyengaard;
J. Oehlschlaegel;
T. Onkelinx;
S. O'Riordan;
E. Parilov;
J. Picka;
N. Picard;
M. Porter;
S. Protsiv;
A. Raftery;
S. Rakshit;
B. Ramage;
P. Ramon;
X. Raynaud,
M. Reiter;
I. Renner;
T.O. Richardson;
B.D. Ripley;
E. Rosenbaum;
B. Rowlingson;
J. Rudokas;
J. Rudge;
C. Ryan;
F. Safavimanesh;
A. Sarkka;
C. Schank;
K. Schladitz;
S. Schutte;
B.T. Scott;
O. Semboli;
F. Semecurbe;
V. Shcherbakov;
G.C. Shen;
P. Shi;
H.-J. Ship;
I.-M. Sintorn;
Y. Song;
M. Spiess;
M. Stevenson;
K. Stucki;
M. Sumner;
P. Surovy;
B. Taylor;
T. Thorarinsdottir;
B. Turlach;
T. Tvedebrink;
K. Ummer;
M. Uppala;
A. van Burgel;
T. Verbeke;
M. Vihtakari;
A. Villers;
F. Vinatier;
S. Voss;
S. Wagner;
H. Wang;
H. Wendrock;
J. Wild;
C. Witthoft;
S. Wong;
M. Woringer;
M.E. Zamboni
and
A. Zeileis.
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat versions 1.48-0 dated 2016-12-22 and 1.49-0 dated 2017-02-08
spatstat-1.48-0/spatstat/src/utils.c |only spatstat-1.49-0/spatstat/DESCRIPTION | 13 spatstat-1.49-0/spatstat/MD5 | 483 ++-- spatstat-1.49-0/spatstat/NAMESPACE | 271 -- spatstat-1.49-0/spatstat/NEWS | 163 + spatstat-1.49-0/spatstat/R/Kmeasure.R | 26 spatstat-1.49-0/spatstat/R/Math.im.R | 12 spatstat-1.49-0/spatstat/R/Math.imlist.R |only spatstat-1.49-0/spatstat/R/areainter.R | 4 spatstat-1.49-0/spatstat/R/badgey.R | 6 spatstat-1.49-0/spatstat/R/bc.R | 4 spatstat-1.49-0/spatstat/R/blur.R | 2 spatstat-1.49-0/spatstat/R/boundingbox.R | 8 spatstat-1.49-0/spatstat/R/breakpts.R | 20 spatstat-1.49-0/spatstat/R/bugtable.R | 12 spatstat-1.49-0/spatstat/R/bw.diggle.R | 9 spatstat-1.49-0/spatstat/R/bw.optim.R | 11 spatstat-1.49-0/spatstat/R/bw.ppl.R | 7 spatstat-1.49-0/spatstat/R/cdf.test.mppm.R | 10 spatstat-1.49-0/spatstat/R/cdftest.R | 32 spatstat-1.49-0/spatstat/R/centroid.R | 8 spatstat-1.49-0/spatstat/R/circdensity.R | 2 spatstat-1.49-0/spatstat/R/clarkevans.R | 6 spatstat-1.49-0/spatstat/R/clickjoin.R | 62 spatstat-1.49-0/spatstat/R/clickpoly.R | 2 spatstat-1.49-0/spatstat/R/clickppp.R | 39 spatstat-1.49-0/spatstat/R/clip.psp.R | 22 spatstat-1.49-0/spatstat/R/close3Dpairs.R | 4 spatstat-1.49-0/spatstat/R/closepairs.R | 86 spatstat-1.49-0/spatstat/R/clusterinfo.R | 106 - spatstat-1.49-0/spatstat/R/clusterset.R | 2 spatstat-1.49-0/spatstat/R/colourschemes.R | 6 spatstat-1.49-0/spatstat/R/colourtables.R | 70 spatstat-1.49-0/spatstat/R/colourtools.R | 30 spatstat-1.49-0/spatstat/R/compareFit.R | 6 spatstat-1.49-0/spatstat/R/compileK.R | 2 spatstat-1.49-0/spatstat/R/concom.R | 16 spatstat-1.49-0/spatstat/R/connected.R | 52 spatstat-1.49-0/spatstat/R/covariates.R | 2 spatstat-1.49-0/spatstat/R/covering.R | 2 spatstat-1.49-0/spatstat/R/cut.ppp.R | 4 spatstat-1.49-0/spatstat/R/daogenton.R | 12 spatstat-1.49-0/spatstat/R/dclftest.R | 32 spatstat-1.49-0/spatstat/R/deldir.R | 50 spatstat-1.49-0/spatstat/R/deltametric.R | 2 spatstat-1.49-0/spatstat/R/density.lpp.R | 12 spatstat-1.49-0/spatstat/R/density.ppp.R | 60 spatstat-1.49-0/spatstat/R/density.psp.R | 2 spatstat-1.49-0/spatstat/R/derivfv.R | 18 spatstat-1.49-0/spatstat/R/detPPF-class.R | 16 spatstat-1.49-0/spatstat/R/detpointprocfamilyfun.R | 30 spatstat-1.49-0/spatstat/R/dg.R | 20 spatstat-1.49-0/spatstat/R/dgs.R | 8 spatstat-1.49-0/spatstat/R/diagnoseppm.R | 6 spatstat-1.49-0/spatstat/R/diagram.R | 38 spatstat-1.49-0/spatstat/R/digestCovariates.R |only spatstat-1.49-0/spatstat/R/disc.R | 57 spatstat-1.49-0/spatstat/R/discarea.R | 4 spatstat-1.49-0/spatstat/R/dist2dpath.R | 10 spatstat-1.49-0/spatstat/R/distan3D.R | 28 spatstat-1.49-0/spatstat/R/distances.R | 14 spatstat-1.49-0/spatstat/R/distances.psp.R | 6 spatstat-1.49-0/spatstat/R/distanxD.R | 28 spatstat-1.49-0/spatstat/R/distbdry.R | 65 spatstat-1.49-0/spatstat/R/distcdf.R | 4 spatstat-1.49-0/spatstat/R/distfunlpp.R | 2 spatstat-1.49-0/spatstat/R/distmap.R | 18 spatstat-1.49-0/spatstat/R/dppm.R | 4 spatstat-1.49-0/spatstat/R/dummify.R | 4 spatstat-1.49-0/spatstat/R/dummy.R | 44 spatstat-1.49-0/spatstat/R/edgeRipley.R | 18 spatstat-1.49-0/spatstat/R/effectfun.R | 16 spatstat-1.49-0/spatstat/R/envelope.R | 104 - spatstat-1.49-0/spatstat/R/envelopelpp.R | 2 spatstat-1.49-0/spatstat/R/eval.fasp.R | 8 spatstat-1.49-0/spatstat/R/eval.fv.R | 18 spatstat-1.49-0/spatstat/R/eval.im.R | 22 spatstat-1.49-0/spatstat/R/evalcovar.R | 68 spatstat-1.49-0/spatstat/R/ewcdf.R | 40 spatstat-1.49-0/spatstat/R/exactMPLEstrauss.R | 8 spatstat-1.49-0/spatstat/R/exactPdt.R | 16 spatstat-1.49-0/spatstat/R/exactdt.R | 16 spatstat-1.49-0/spatstat/R/fardist.R | 12 spatstat-1.49-0/spatstat/R/fasp.R | 18 spatstat-1.49-0/spatstat/R/fgk3.R | 58 spatstat-1.49-0/spatstat/R/fiksel.R | 10 spatstat-1.49-0/spatstat/R/fitted.ppm.R | 4 spatstat-1.49-0/spatstat/R/flipxy.R | 4 spatstat-1.49-0/spatstat/R/formulae.R | 121 - spatstat-1.49-0/spatstat/R/fourierbasis.R | 6 spatstat-1.49-0/spatstat/R/fryplot.R | 8 spatstat-1.49-0/spatstat/R/fv.R | 137 - spatstat-1.49-0/spatstat/R/geyer.R | 26 spatstat-1.49-0/spatstat/R/hackglmm.R | 12 spatstat-1.49-0/spatstat/R/hasclose.R | 9 spatstat-1.49-0/spatstat/R/hermite.R | 4 spatstat-1.49-0/spatstat/R/hexagons.R | 20 spatstat-1.49-0/spatstat/R/hierhard.R | 4 spatstat-1.49-0/spatstat/R/hierpair.family.R | 10 spatstat-1.49-0/spatstat/R/hierstrhard.R | 4 spatstat-1.49-0/spatstat/R/hybrid.R | 14 spatstat-1.49-0/spatstat/R/hybrid.family.R | 8 spatstat-1.49-0/spatstat/R/hyperframe.R | 22 spatstat-1.49-0/spatstat/R/hypersub.R | 26 spatstat-1.49-0/spatstat/R/idw.R | 14 spatstat-1.49-0/spatstat/R/images.R | 154 - spatstat-1.49-0/spatstat/R/indicator.R |only spatstat-1.49-0/spatstat/R/indices.R | 4 spatstat-1.49-0/spatstat/R/infline.R | 30 spatstat-1.49-0/spatstat/R/interp.im.R | 12 spatstat-1.49-0/spatstat/R/iplot.R | 14 spatstat-1.49-0/spatstat/R/iplotlayered.R | 12 spatstat-1.49-0/spatstat/R/ippm.R | 10 spatstat-1.49-0/spatstat/R/is.cadlag.R | 2 spatstat-1.49-0/spatstat/R/is.subset.owin.R | 6 spatstat-1.49-0/spatstat/R/kernel2d.R | 6 spatstat-1.49-0/spatstat/R/kppm.R | 24 spatstat-1.49-0/spatstat/R/laslett.R | 26 spatstat-1.49-0/spatstat/R/layered.R | 40 spatstat-1.49-0/spatstat/R/lennard.R | 10 spatstat-1.49-0/spatstat/R/leverage.R | 20 spatstat-1.49-0/spatstat/R/linalg.R | 12 spatstat-1.49-0/spatstat/R/linearK.R | 2 spatstat-1.49-0/spatstat/R/linearKmulti.R | 14 spatstat-1.49-0/spatstat/R/lineardisc.R | 8 spatstat-1.49-0/spatstat/R/linearmrkcon.R | 8 spatstat-1.49-0/spatstat/R/linearpcf.R | 2 spatstat-1.49-0/spatstat/R/linearpcfmulti.R | 14 spatstat-1.49-0/spatstat/R/linequad.R | 48 spatstat-1.49-0/spatstat/R/linfun.R | 4 spatstat-1.49-0/spatstat/R/linim.R | 32 spatstat-1.49-0/spatstat/R/linnet.R | 20 spatstat-1.49-0/spatstat/R/linnetsurgery.R | 4 spatstat-1.49-0/spatstat/R/lintess.R | 14 spatstat-1.49-0/spatstat/R/lixellate.R | 10 spatstat-1.49-0/spatstat/R/locator.R |only spatstat-1.49-0/spatstat/R/logistic.R | 16 spatstat-1.49-0/spatstat/R/lohboot.R | 10 spatstat-1.49-0/spatstat/R/lpp.R | 13 spatstat-1.49-0/spatstat/R/lppm.R | 8 spatstat-1.49-0/spatstat/R/lurking.R | 14 spatstat-1.49-0/spatstat/R/measures.R | 102 - spatstat-1.49-0/spatstat/R/mppm.R | 7 spatstat-1.49-0/spatstat/R/newformula.R |only spatstat-1.49-0/spatstat/R/options.R | 2 spatstat-1.49-0/spatstat/R/otherpackages.R | 8 spatstat-1.49-0/spatstat/R/parres.R | 18 spatstat-1.49-0/spatstat/R/pixellate.R | 87 spatstat-1.49-0/spatstat/R/plot.anylist.R | 72 spatstat-1.49-0/spatstat/R/plot.fv.R | 4 spatstat-1.49-0/spatstat/R/plot.plotppm.R | 4 spatstat-1.49-0/spatstat/R/polygood.R |only spatstat-1.49-0/spatstat/R/polynom.R |only spatstat-1.49-0/spatstat/R/ppp.R | 12 spatstat-1.49-0/spatstat/R/ppqq.R | 2 spatstat-1.49-0/spatstat/R/primefactors.R | 190 + spatstat-1.49-0/spatstat/R/psp.R | 10 spatstat-1.49-0/spatstat/R/pspcross.R | 14 spatstat-1.49-0/spatstat/R/randommk.R | 6 spatstat-1.49-0/spatstat/R/reduceformula.R | 4 spatstat-1.49-0/spatstat/R/relrisk.R | 7 spatstat-1.49-0/spatstat/R/resolve.defaults.R | 18 spatstat-1.49-0/spatstat/R/rmh.default.R | 135 - spatstat-1.49-0/spatstat/R/rmhcontrol.R | 38 spatstat-1.49-0/spatstat/R/rmhsnoop.R | 2 spatstat-1.49-0/spatstat/R/setcov.R | 13 spatstat-1.49-0/spatstat/R/smooth.ppp.R | 7 spatstat-1.49-0/spatstat/R/solist.R | 13 spatstat-1.49-0/spatstat/R/ssf.R | 30 spatstat-1.49-0/spatstat/R/strauss.R | 2 spatstat-1.49-0/spatstat/R/summary.ppm.R | 4 spatstat-1.49-0/spatstat/R/tapplysum.R | 10 spatstat-1.49-0/spatstat/R/terse.R | 88 spatstat-1.49-0/spatstat/R/timed.R |only spatstat-1.49-0/spatstat/R/triplets.R | 4 spatstat-1.49-0/spatstat/R/unique.ppp.R | 4 spatstat-1.49-0/spatstat/R/util.R | 1418 -------------- spatstat-1.49-0/spatstat/R/utilarg.R |only spatstat-1.49-0/spatstat/R/utilmatrix.R |only spatstat-1.49-0/spatstat/R/utilseq.R |only spatstat-1.49-0/spatstat/R/utiltext.R |only spatstat-1.49-0/spatstat/R/varblock.R | 4 spatstat-1.49-0/spatstat/R/weights.R | 4 spatstat-1.49-0/spatstat/R/window.R | 92 spatstat-1.49-0/spatstat/R/wingeom.R | 112 - spatstat-1.49-0/spatstat/R/xycircle.R |only spatstat-1.49-0/spatstat/R/xypolygon.R | 257 -- spatstat-1.49-0/spatstat/inst/doc/datasets.pdf |binary spatstat-1.49-0/spatstat/inst/doc/getstart.pdf |binary spatstat-1.49-0/spatstat/inst/doc/packagesizes.txt | 1 spatstat-1.49-0/spatstat/inst/doc/replicated.pdf |binary spatstat-1.49-0/spatstat/inst/doc/shapefiles.pdf |binary spatstat-1.49-0/spatstat/inst/doc/updates.pdf |binary spatstat-1.49-0/spatstat/man/Extract.solist.Rd | 24 spatstat-1.49-0/spatstat/man/Math.im.Rd | 16 spatstat-1.49-0/spatstat/man/Math.imlist.Rd |only spatstat-1.49-0/spatstat/man/Ops.msr.Rd |only spatstat-1.49-0/spatstat/man/PPversion.Rd | 2 spatstat-1.49-0/spatstat/man/as.data.frame.im.Rd | 15 spatstat-1.49-0/spatstat/man/as.function.leverage.ppm.Rd |only spatstat-1.49-0/spatstat/man/as.function.owin.Rd |only spatstat-1.49-0/spatstat/man/bdist.pixels.Rd | 23 spatstat-1.49-0/spatstat/man/bronzefilter.Rd | 110 - spatstat-1.49-0/spatstat/man/cdf.test.Rd | 17 spatstat-1.49-0/spatstat/man/density.ppp.Rd | 20 spatstat-1.49-0/spatstat/man/detpointprocfamilyfun.Rd | 366 +-- spatstat-1.49-0/spatstat/man/dim.detpointprocfamily.Rd | 44 spatstat-1.49-0/spatstat/man/dppBessel.Rd | 84 spatstat-1.49-0/spatstat/man/dppCauchy.Rd | 100 spatstat-1.49-0/spatstat/man/dppGauss.Rd | 94 spatstat-1.49-0/spatstat/man/dppMatern.Rd | 102 - spatstat-1.49-0/spatstat/man/dppPowerExp.Rd | 96 spatstat-1.49-0/spatstat/man/dppapproxkernel.Rd | 60 spatstat-1.49-0/spatstat/man/dppapproxpcf.Rd | 62 spatstat-1.49-0/spatstat/man/dppeigen.Rd | 58 spatstat-1.49-0/spatstat/man/dppkernel.Rd | 56 spatstat-1.49-0/spatstat/man/dppparbounds.Rd | 66 spatstat-1.49-0/spatstat/man/dppspecden.Rd | 60 spatstat-1.49-0/spatstat/man/dppspecdenrange.Rd | 60 spatstat-1.49-0/spatstat/man/ewcdf.Rd | 7 spatstat-1.49-0/spatstat/man/harmonic.Rd | 3 spatstat-1.49-0/spatstat/man/hextess.Rd | 9 spatstat-1.49-0/spatstat/man/intersect.owin.Rd | 3 spatstat-1.49-0/spatstat/man/is.dppm.Rd | 36 spatstat-1.49-0/spatstat/man/kppm.Rd | 3 spatstat-1.49-0/spatstat/man/leverage.ppm.Rd | 4 spatstat-1.49-0/spatstat/man/mean.im.Rd | 70 spatstat-1.49-0/spatstat/man/measureVariation.Rd |only spatstat-1.49-0/spatstat/man/methods.ssf.Rd | 10 spatstat-1.49-0/spatstat/man/msr.Rd | 6 spatstat-1.49-0/spatstat/man/owin.Rd | 7 spatstat-1.49-0/spatstat/man/pixellate.ppp.Rd | 39 spatstat-1.49-0/spatstat/man/polynom.Rd |only spatstat-1.49-0/spatstat/man/ppp.Rd | 57 spatstat-1.49-0/spatstat/man/quantile.ewcdf.Rd | 21 spatstat-1.49-0/spatstat/man/rdpp.Rd | 120 - spatstat-1.49-0/spatstat/man/regularpolygon.Rd |only spatstat-1.49-0/spatstat/man/rmhcontrol.Rd | 22 spatstat-1.49-0/spatstat/man/rsyst.Rd | 178 - spatstat-1.49-0/spatstat/man/spatstat-internal.Rd | 33 spatstat-1.49-0/spatstat/man/spatstat.options.Rd | 111 - spatstat-1.49-0/spatstat/man/stieltjes.Rd | 24 spatstat-1.49-0/spatstat/man/update.detpointprocfamily.Rd | 62 spatstat-1.49-0/spatstat/man/valid.detpointprocfamily.Rd | 68 spatstat-1.49-0/spatstat/man/where.max.Rd | 8 spatstat-1.49-0/spatstat/src/circxseg.c |only spatstat-1.49-0/spatstat/src/distances.c | 42 spatstat-1.49-0/spatstat/src/distmapbin.c | 6 spatstat-1.49-0/spatstat/src/init.c |only spatstat-1.49-0/spatstat/src/matchpoints.c |only spatstat-1.49-0/spatstat/src/primefax.c |only spatstat-1.49-0/spatstat/src/proto.h |only spatstat-1.49-0/spatstat/src/revcum.c |only spatstat-1.49-0/spatstat/tests/testsAtoF.R | 9 spatstat-1.49-0/spatstat/tests/testsGtoK.R | 4 spatstat-1.49-0/spatstat/tests/testsQtoR.R | 4 256 files changed, 3923 insertions(+), 5109 deletions(-)
Title: Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness
Estimation
Description: GAMs, GAMMs and other generalized ridge regression with
multiple smoothing parameter estimation by GCV, REML or UBRE/AIC.
Includes a gam() function, a wide variety of smoothers, JAGS
support and distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.8-16 dated 2016-11-07 and 1.8-17 dated 2017-02-08
ChangeLog | 28 +++++++ DESCRIPTION | 6 - MD5 | 67 +++++++++--------- NAMESPACE | 7 + R/efam.r | 2 R/fast-REML.r | 8 +- R/gam.fit3.r | 24 ++++-- R/gam.fit4.r | 25 ++++-- R/gamlss.r | 12 ++- R/mgcv.r | 22 ++++- R/smooth.r | 122 +++++++++++++++++++++++++++++---- inst/CITATION | 47 ++++++------ inst/po/de/LC_MESSAGES/R-mgcv.mo |binary inst/po/en@quot/LC_MESSAGES/R-mgcv.mo |binary inst/po/en@quot/LC_MESSAGES/mgcv.mo |binary inst/po/fr/LC_MESSAGES/R-mgcv.mo |binary inst/po/ko/LC_MESSAGES/R-mgcv.mo |binary inst/po/pl/LC_MESSAGES/R-mgcv.mo |binary man/gamlss.etamu.Rd |only man/gamlss.gH.Rd |only man/jagam.Rd | 2 man/smooth.construct.bs.smooth.spec.Rd | 52 +++++++++++--- man/smooth.construct.tp.smooth.spec.Rd | 16 ++++ man/trind.generator.Rd |only man/uniquecombs.Rd | 16 +++- po/R-de.po | 18 ++++ po/R-fr.po | 18 ++++ po/R-ko.po | 18 ++++ po/R-mgcv.pot | 19 ++++- po/R-pl.po | 22 +++++ po/mgcv.pot | 4 - src/discrete.c | 15 ++-- src/gdi.c | 56 +++++++-------- src/magic.c | 10 +- src/mat.c | 108 ++++++++++++++--------------- src/mgcv.h | 16 +--- 36 files changed, 536 insertions(+), 224 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. 'Armadillo' is licensed under the MPL 2.0, while
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the
GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that Armadillo
requires a fairly recent compiler; for the g++ family at least version 4.6.*
is required.
Author: Dirk Eddelbuettel, Romain Francois and Doug Bates
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.7.600.1.0 dated 2016-12-18 and 0.7.700.0.0 dated 2017-02-08
ChangeLog | 17 ++++ DESCRIPTION | 8 +- MD5 | 49 +++++++++----- inst/NEWS.Rd | 23 ++++++ inst/doc/RcppArmadillo-intro.pdf |binary inst/doc/RcppArmadillo-unitTests.pdf |binary inst/include/armadillo | 13 +++ inst/include/armadillo_bits/Glue_bones.hpp | 7 +- inst/include/armadillo_bits/arma_forward.hpp | 2 inst/include/armadillo_bits/arma_version.hpp | 6 - inst/include/armadillo_bits/auxlib_meat.hpp | 8 +- inst/include/armadillo_bits/field_meat.hpp | 4 - inst/include/armadillo_bits/fn_log_det.hpp | 51 ++++++++++++-- inst/include/armadillo_bits/fn_polyfit.hpp |only inst/include/armadillo_bits/fn_polyval.hpp |only inst/include/armadillo_bits/fn_range.hpp |only inst/include/armadillo_bits/fn_symmat.hpp | 58 +++++++++++++++++ inst/include/armadillo_bits/fn_trimat.hpp | 26 +++++++ inst/include/armadillo_bits/glue_polyfit_bones.hpp |only inst/include/armadillo_bits/glue_polyfit_meat.hpp |only inst/include/armadillo_bits/glue_polyval_bones.hpp |only inst/include/armadillo_bits/glue_polyval_meat.hpp |only inst/include/armadillo_bits/op_range_bones.hpp |only inst/include/armadillo_bits/op_range_meat.hpp |only inst/include/armadillo_bits/running_stat_bones.hpp | 7 +- inst/include/armadillo_bits/running_stat_meat.hpp | 14 +++- inst/include/armadillo_bits/running_stat_vec_bones.hpp | 57 +++++++++++----- inst/include/armadillo_bits/running_stat_vec_meat.hpp | 31 ++++++--- inst/include/armadillo_bits/spop_symmat_bones.hpp |only inst/include/armadillo_bits/spop_symmat_meat.hpp |only inst/include/armadillo_bits/spop_trimat_bones.hpp |only inst/include/armadillo_bits/spop_trimat_meat.hpp |only 32 files changed, 312 insertions(+), 69 deletions(-)
Title: Bi-Directional Interface Between R and Scala with Callbacks
Description: The Scala interpreter is embedded in R and callbacks to R from the embedded interpreter are supported. Conversely, the R interpreter is embedded in Scala. Scala versions in the 2.10.x, 2.11.x, and 2.12.x series are supported.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 1.0.14 dated 2016-11-22 and 1.0.15 dated 2017-02-08
rscala-1.0.14/rscala/inst/java/rscala_2.10-1.0.14.jar |only rscala-1.0.14/rscala/inst/java/rscala_2.11-1.0.14.jar |only rscala-1.0.14/rscala/inst/java/rscala_2.12-1.0.14.jar |only rscala-1.0.14/rscala/java/rscala_2.10-1.0.14-sources.jar |only rscala-1.0.14/rscala/java/rscala_2.11-1.0.14-sources.jar |only rscala-1.0.14/rscala/java/rscala_2.12-1.0.14-sources.jar |only rscala-1.0.15/rscala/DESCRIPTION | 12 +++++----- rscala-1.0.15/rscala/MD5 | 18 +++++++-------- rscala-1.0.15/rscala/NEWS | 4 +++ rscala-1.0.15/rscala/R/protocol.R | 2 - rscala-1.0.15/rscala/inst/java/rscala_2.10-1.0.15.jar |only rscala-1.0.15/rscala/inst/java/rscala_2.11-1.0.15.jar |only rscala-1.0.15/rscala/inst/java/rscala_2.12-1.0.15.jar |only rscala-1.0.15/rscala/java/rscala_2.10-1.0.15-sources.jar |only rscala-1.0.15/rscala/java/rscala_2.11-1.0.15-sources.jar |only rscala-1.0.15/rscala/java/rscala_2.12-1.0.15-sources.jar |only 16 files changed, 20 insertions(+), 16 deletions(-)
Title: Easy Interface to Advanced PostgreSQL Features
Description: Allows ad hoc queries and reading and
writing data frames to and from a database.
Author: Timothy H. Keitt
Maintainer: Timothy H. Keitt <tkeitt@gmail.com>
Diff between rpg versions 1.4 dated 2015-02-22 and 1.5 dated 2017-02-08
rpg-1.4/rpg/cleanup |only rpg-1.4/rpg/configure.in |only rpg-1.4/rpg/man/format_for_send.Rd |only rpg-1.4/rpg/src/config.guess |only rpg-1.4/rpg/src/config.sub |only rpg-1.4/rpg/src/install.sh |only rpg-1.4/rpg/src/libpq |only rpg-1.5/rpg/DESCRIPTION | 25 rpg-1.5/rpg/MD5 | 166 - rpg-1.5/rpg/NAMESPACE | 20 rpg-1.5/rpg/R/RcppExports.R | 45 rpg-1.5/rpg/R/rpg.R | 298 +- rpg-1.5/rpg/R/sql.R |only rpg-1.5/rpg/R/utils.R | 105 rpg-1.5/rpg/configure | 4123 ------------------------------------ rpg-1.5/rpg/man/async.Rd | 7 rpg-1.5/rpg/man/connection-utils.Rd | 7 rpg-1.5/rpg/man/connection.Rd | 31 rpg-1.5/rpg/man/copy.Rd | 7 rpg-1.5/rpg/man/cursor.Rd | 23 rpg-1.5/rpg/man/format-for-send.Rd |only rpg-1.5/rpg/man/misc.Rd | 18 rpg-1.5/rpg/man/path.Rd |only rpg-1.5/rpg/man/prepare.Rd | 7 rpg-1.5/rpg/man/psql.Rd | 2 rpg-1.5/rpg/man/query.Rd | 7 rpg-1.5/rpg/man/rpg-package.Rd | 6 rpg-1.5/rpg/man/sql.Rd |only rpg-1.5/rpg/man/stack.Rd | 3 rpg-1.5/rpg/man/stow.Rd | 7 rpg-1.5/rpg/man/table-info.Rd | 19 rpg-1.5/rpg/man/table-io.Rd | 9 rpg-1.5/rpg/man/tracing.Rd | 6 rpg-1.5/rpg/man/transactions.Rd | 7 rpg-1.5/rpg/src/Makevars.in | 7 rpg-1.5/rpg/src/Makevars.win | 15 rpg-1.5/rpg/src/RcppExports.cpp | 482 +--- rpg-1.5/rpg/src/get-libpq.R |only rpg-1.5/rpg/src/get-pgversion.R |only rpg-1.5/rpg/src/libpq-fe.h |only rpg-1.5/rpg/src/pg_config_ext.h |only rpg-1.5/rpg/src/postgres_ext.h |only rpg-1.5/rpg/src/rpg.cpp | 45 rpg-1.5/rpg/src/rpg.h | 21 rpg-1.5/rpg/tools |only 45 files changed, 795 insertions(+), 4723 deletions(-)
Title: Quickly Get Datetime Data Ready for Analysis
Description: Transforms datetime data into a format ready for analysis.
It offers two functionalities; aggregating data to a higher level interval
(thicken) and imputing records where observations were absent (pad). It also
offers a few functions that assist with filling missing values after padding.
Author: Edwin Thoen
Maintainer: Edwin Thoen <edwinthoen@gmail.com>
Diff between padr versions 0.1.0 dated 2017-01-17 and 0.2.0 dated 2017-02-08
DESCRIPTION | 13 + MD5 | 28 +-- NEWS.md | 17 ++ R/check_date_variables.R | 20 +- R/fill_functions.R | 49 +++--- R/pad.R | 212 ++++++++++++++++++++++------- inst/doc/padr.R | 5 inst/doc/padr.Rmd | 9 + inst/doc/padr.html | 8 - inst/doc/padr_implementation.html | 4 man/pad.Rd | 18 +- tests/testthat/test_check_date_variables.R | 2 tests/testthat/test_fill_functions.R | 17 ++ tests/testthat/test_pad.R | 50 ++++++ vignettes/padr.Rmd | 9 + 15 files changed, 349 insertions(+), 112 deletions(-)
Title: Numerical Standard Errors Computation in R
Description: Collection of functions designed to calculate numerical standard error (NSE) of univariate time series
as described in Ardia et al. (2016) <doi:10.2139/ssrn.2741587> and Ardia and Bluteau (2017) <doi:10.2139/ssrn.2741587>.
Author: David Ardia [aut],
Keven Bluteau [aut, cre]
Maintainer: Keven Bluteau <Keven.Bluteau@unine.ch>
Diff between nse versions 1-00.16 dated 2017-01-24 and 1-00.17 dated 2017-02-08
DESCRIPTION | 13 ++++++----- MD5 | 26 +++++++++++----------- NEWS | 3 ++ R/nse.R | 62 +++++++++++++++++++++++++++++------------------------ THANKS | 4 ++- build/partial.rdb |binary inst/CITATION | 47 +++++++++++++++++++--------------------- man/nse.Rd | 37 ++++++++++++++++++------------- man/nse.andrews.Rd | 8 +++--- man/nse.boot.Rd | 6 ++--- man/nse.geyer.Rd | 2 - man/nse.hiruk.Rd | 2 - man/nse.nw.Rd | 4 +-- man/nse.spec0.Rd | 2 - 14 files changed, 118 insertions(+), 98 deletions(-)
Title: Multiple Hypotheses Testing for Discrete Data
Description: A Comprehensive tool for almost all existing multiple testing
methods for discrete data. The package also provides some novel multiple testing
procedures controlling FWER/FDR for discrete data. Given discrete p-values
and their domains, the [method].p.adjust function returns adjusted p-values,
which can be used to compare with the nominal significant level alpha and make
decisions. For users' convenience, the functions also provide the output option
for printing decision rules.
Author: Yalin Zhu, Wenge Guo
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>
Diff between MHTdiscrete versions 0.1.2 dated 2016-12-02 and 0.1.3 dated 2017-02-08
DESCRIPTION | 9 ++++---- MD5 | 44 +++++++++++++++++++-------------------- R/FDRSD.R | 12 ++++++++-- R/FDRSU.R | 48 ++++++++++++++++++++++++++++++++---------- R/FWERSD.R | 24 ++++++++++++++++----- R/FWERSS.R | 54 ++++++++++++++++++++++++++++++++++-------------- R/FWERSU.R | 24 ++++++++++++++++----- man/GTBH.p.adjust.Rd | 13 +++++++---- man/GTBY.p.adjust.Rd | 13 +++++++---- man/MBH.p.adjust.Rd | 13 +++++++---- man/MBL.p.adjust.Rd | 13 +++++++---- man/MBY.p.adjust.Rd | 13 +++++++---- man/MBonf.p.adjust.Rd | 15 ++++++++----- man/MHTdiscrete.Rd | 8 +++---- man/MHoch.p.adjust.Rd | 13 +++++++---- man/MHolm.p.adjust.Rd | 13 +++++++---- man/MixBonf.p.adjust.Rd | 15 ++++++++----- man/Roth.p.adjust.Rd | 13 +++++++---- man/Roth.rej.Rd | 7 ++---- man/Sidak.p.adjust.Rd | 15 ++++++++----- man/TH.p.adjust.Rd | 13 +++++++---- man/Tarone.p.adjust.Rd | 15 ++++++++----- man/getPval.Rd | 7 ++---- 23 files changed, 265 insertions(+), 149 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc],
Michael Dietze [aut],
Christoph Burow [aut, trl, dtc],
Margret C. Fuchs [aut],
Christoph Schmidt [aut],
Manfred Fischer [aut, trl],
Johannes Friedrich [aut],
Norbert Mercier [ctb],
Rachel K. Smedley [ctb],
Claire Christophe [ctb],
Antoine Zink [ctb],
Julie Durcan [ctb],
Georgina King [ctb, dtc],
Anne Philippe [ctb],
Guillaume Guerin [ctb],
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between Luminescence versions 0.7.1 dated 2017-02-07 and 0.7.3 dated 2017-02-08
DESCRIPTION | 8 MD5 | 296 +++++++++++++-------------- NEWS |only R/Luminescence-package.R | 2 R/PSL2Risoe.BINfileData.R | 53 ++-- R/RisoeBINfileData-class.R | 39 +-- R/read_BIN2R.R | 7 R/write_R2BIN.R | 10 inst/NEWS.Rd |only man/Analyse_SAR.OSLdata.Rd | 2 man/CW2pHMi.Rd | 2 man/CW2pLM.Rd | 2 man/CW2pLMi.Rd | 2 man/CW2pPMi.Rd | 2 man/GitHub-API.Rd | 2 man/Luminescence-package.Rd | 2 man/PSL2Risoe.BINfileData.Rd | 6 man/RLum-class.Rd | 2 man/RLum.Analysis-class.Rd | 2 man/RLum.Data.Curve-class.Rd | 2 man/RLum.Data.Image-class.Rd | 2 man/RLum.Data.Spectrum-class.Rd | 2 man/RLum.Results-class.Rd | 2 man/Risoe.BINfileData-class.Rd | 41 ++- man/Risoe.BINfileData2RLum.Analysis.Rd | 2 man/Second2Gray.Rd | 2 man/analyse_FadingMeasurement.Rd | 2 man/analyse_IRSAR.RF.Rd | 2 man/analyse_SAR.CWOSL.Rd | 2 man/analyse_SAR.TL.Rd | 2 man/analyse_baSAR.Rd | 2 man/analyse_pIRIRSequence.Rd | 2 man/analyse_portableOSL.Rd | 2 man/app_RLum.Rd | 2 man/apply_CosmicRayRemoval.Rd | 2 man/apply_EfficiencyCorrection.Rd | 2 man/bin_RLum.Data.Rd | 2 man/calc_AliquotSize.Rd | 2 man/calc_AverageDose.Rd | 2 man/calc_CentralDose.Rd | 2 man/calc_CommonDose.Rd | 2 man/calc_CosmicDoseRate.Rd | 2 man/calc_FadingCorr.Rd | 2 man/calc_FastRatio.Rd | 2 man/calc_FiniteMixture.Rd | 2 man/calc_FuchsLang2001.Rd | 2 man/calc_HomogeneityTest.Rd | 2 man/calc_IEU.Rd | 2 man/calc_Kars2008.Rd | 2 man/calc_MaxDose.Rd | 2 man/calc_MinDose.Rd | 2 man/calc_OSLLxTxRatio.Rd | 2 man/calc_SourceDoseRate.Rd | 2 man/calc_Statistics.Rd | 2 man/calc_TLLxTxRatio.Rd | 2 man/calc_ThermalLifetime.Rd | 2 man/calc_gSGC.Rd | 2 man/convert_BIN2CSV.Rd | 2 man/convert_Daybreak2CSV.Rd | 2 man/convert_PSL2CSV.Rd | 2 man/convert_XSYG2CSV.Rd | 2 man/extract_IrradiationTimes.Rd | 2 man/fit_CWCurve.Rd | 2 man/fit_LMCurve.Rd | 2 man/get_Layout.Rd | 2 man/get_Quote.Rd | 2 man/get_RLum.Rd | 2 man/get_Risoe.BINfileData.Rd | 2 man/get_rightAnswer.Rd | 2 man/length_RLum.Rd | 2 man/merge_RLum.Analysis.Rd | 2 man/merge_RLum.Data.Curve.Rd | 2 man/merge_RLum.Rd | 2 man/merge_RLum.Results.Rd | 2 man/merge_Risoe.BINfileData.Rd | 2 man/model_LuminescenceSignals.Rd | 2 man/names_RLum.Rd | 2 man/plot_AbanicoPlot.Rd | 2 man/plot_DRTResults.Rd | 2 man/plot_DetPlot.Rd | 2 man/plot_FilterCombinations.Rd | 2 man/plot_GrowthCurve.Rd | 2 man/plot_Histogram.Rd | 2 man/plot_KDE.Rd | 2 man/plot_NRt.Rd | 2 man/plot_RLum.Analysis.Rd | 2 man/plot_RLum.Data.Curve.Rd | 2 man/plot_RLum.Data.Image.Rd | 2 man/plot_RLum.Data.Spectrum.Rd | 2 man/plot_RLum.Rd | 2 man/plot_RLum.Results.Rd | 2 man/plot_RadialPlot.Rd | 2 man/plot_Risoe.BINfileData.Rd | 2 man/plot_ViolinPlot.Rd | 2 man/read_BIN2R.Rd | 4 man/read_Daybreak2R.Rd | 2 man/read_PSL2R.Rd | 2 man/read_SPE2R.Rd | 2 man/read_XSYG2R.Rd | 2 man/replicate_RLum.Rd | 2 man/report_RLum.Rd | 2 man/sTeve.Rd | 2 man/set_RLum.Rd | 2 man/set_Risoe.BINfileData.Rd | 2 man/smooth_RLum.Rd | 2 man/structure_RLum.Rd | 2 man/template_DRAC.Rd | 2 man/tune_Data.Rd | 2 man/use_DRAC.Rd | 2 man/verify_SingleGrainData.Rd | 2 man/write_R2BIN.Rd | 4 man/write_RLum2CSV.Rd | 2 tests/testthat/test_Analyse_SAROSLdata.R | 2 tests/testthat/test_CW2pX.R | 4 tests/testthat/test_PSL2RisoeBINfiledata.R | 2 tests/testthat/test_RisoeBINfileData-class.R | 1 tests/testthat/test_Second2Gray.R | 2 tests/testthat/test_analyse_IRSARRF.R | 1 tests/testthat/test_analyse_SARCWOSL.R | 8 tests/testthat/test_analyse_baSAR.R | 1 tests/testthat/test_analyse_pIRIRSequence.R | 2 tests/testthat/test_analyse_portableOSL.R | 2 tests/testthat/test_bin_RLumData.R | 4 tests/testthat/test_calc_AliquotSize.R | 6 tests/testthat/test_calc_AverageDose.R | 4 tests/testthat/test_calc_CentralDose.R | 8 tests/testthat/test_calc_CommonDose.R | 16 - tests/testthat/test_calc_CosmicDoseRate.R | 26 +- tests/testthat/test_calc_FadingCorr.R | 12 - tests/testthat/test_calc_FastRatio.R | 12 - tests/testthat/test_calc_FiniteMixture.R | 16 - tests/testthat/test_calc_FuchsLang2001.R | 18 - tests/testthat/test_calc_HomogeneityTest.R | 12 - tests/testthat/test_calc_IEU.R | 18 - tests/testthat/test_calc_Kars2008.R | 3 tests/testthat/test_calc_MaxDose.R | 20 - tests/testthat/test_calc_MinDose.R | 12 - tests/testthat/test_calc_OSLLxTxRatio.R | 14 - tests/testthat/test_calc_SourceDoseRate.R | 8 tests/testthat/test_calc_Statistics.R | 5 tests/testthat/test_calc_TLLxTxRatio.R | 16 - tests/testthat/test_calc_ThermalLifetime.R | 24 +- tests/testthat/test_calc_gSGC.R | 2 tests/testthat/test_fit_CWCurve.R | 4 tests/testthat/test_fit_LMCurve.R | 2 tests/testthat/test_get_RLum.R | 2 tests/testthat/test_plot_Functions.R | 3 tests/testthat/test_plot_GrowthCurve.R | 3 tests/testthat/test_smooth_RLum.R | 2 tests/testthat/test_verify_SingleGrainData.R | 1 150 files changed, 507 insertions(+), 459 deletions(-)
Title: Nonparametric P-Value Estimation for Predictors in Lasso
Description: Estimate p-values for predictors x against target variable y in lasso regression, using the regularization strength when each predictor enters the active set of regularization path for the first time as the statistic. This is based on the assumption that predictors that (first) become active earlier tend to be more significant. Null distribution for each predictor is computed analytically under approximation, which aims at efficiency and accuracy for small p-values.
Author: Lingfei Wang <Lingfei.Wang.github@outlook.com>
Maintainer: Lingfei Wang <Lingfei.Wang.github@outlook.com>
Diff between lassopv versions 0.1.1 dated 2017-01-20 and 0.1.3 dated 2017-02-08
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- man/lassopv-package.Rd | 4 ++-- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Estimation of the Generalized Symmetry Point, an Optimal
Cutpoint in Continuous Diagnostic Tests
Description: Estimation of the cutpoint defined by the Generalized Symmetry point in a binary classification setting based on a continuous diagnostic test or marker. Two methods have been implemented to construct confidence intervals for this optimal cutpoint, one based on the Generalized Pivotal Quantity and the other based on Empirical Likelihood. Numerical and graphical outputs for these two methods are easily obtained.
Author: Mónica López-Ratón, Carmen Cadarso-Suárez, Elisa M. Molanes-López, Emilio Letón
Maintainer: Mónica López-Ratón <monica.lopez.raton@gmail.com>
Diff between GsymPoint versions 1.0 dated 2015-08-27 and 1.1 dated 2017-02-08
DESCRIPTION | 12 MD5 | 51 +- NAMESPACE | 8 R/BoxCox_binormal_MLestimate.R | 1 R/calculate.empirical.AUC.R | 18 R/function.EL.R | 25 - R/function.GPQ.R | 141 +++++-- R/function.auto.R |only R/gsym.point.R | 741 ++++++++++++++++++++++++++--------------- R/minus_loglik.R | 2 R/plot.gsym.point.R | 156 ++++++-- R/print.summary.gsym.point.R | 604 +++++++++++++++++++++------------ R/summary.gsym.point.R | 4 data/elastase.rda |binary data/melanoma.rda |binary data/prostate.rda |binary inst |only man/GsymPoint-package.Rd | 23 - man/control.gsym.point.Rd | 53 ++ man/elastase.Rd | 8 man/gsym.point.Rd | 75 ++-- man/melanoma.Rd | 11 man/plot.gsym.point.Rd | 64 ++- man/print.gsym.point.Rd | 8 man/prostate.Rd | 7 man/summary.gsym.point.Rd | 18 tests |only 27 files changed, 1330 insertions(+), 700 deletions(-)
Title: Cognitive Diagnosis Modeling
Description:
Functions for cognitive diagnosis modeling
and multidimensional item response modeling for
dichotomous and polytomous data. This package
enables the estimation of the DINA and DINO model,
the multiple group (polytomous) GDINA model,
the multiple choice DINA model, the general diagnostic
model (GDM), the multidimensional linear compensatory
item response model and the structured latent class
model (SLCA).
Author:
Alexander Robitzsch [aut, cre], Thomas Kiefer [aut],
Ann Cathrice George [aut], Ali Uenlue [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between CDM versions 5.3-0 dated 2017-01-11 and 5.4-0 dated 2017-02-08
CDM-5.3-0/CDM/src/din.jml.devcrit_c.cpp |only CDM-5.4-0/CDM/DESCRIPTION | 10 CDM-5.4-0/CDM/MD5 | 350 ++++---- CDM-5.4-0/CDM/R/IRT.IC.R | 2 CDM-5.4-0/CDM/R/IRT.RMSD.R | 40 - CDM-5.4-0/CDM/R/IRT.anova.R | 2 CDM-5.4-0/CDM/R/IRT.compareModels.R | 2 CDM-5.4-0/CDM/R/IRT.data.R | 2 CDM-5.4-0/CDM/R/IRT.derivedParameters.R | 2 CDM-5.4-0/CDM/R/IRT.expectedCounts.R | 2 CDM-5.4-0/CDM/R/IRT.irfprob.R | 2 CDM-5.4-0/CDM/R/IRT.irfprobPlot.R | 2 CDM-5.4-0/CDM/R/IRT.jackknife.gdina.R | 2 CDM-5.4-0/CDM/R/IRT.likelihood.R | 2 CDM-5.4-0/CDM/R/IRT.parameterTable.R | 2 CDM-5.4-0/CDM/R/IRT.posterior.R | 2 CDM-5.4-0/CDM/R/IRT.predict.R | 19 CDM-5.4-0/CDM/R/IRT.repDesign.R | 4 CDM-5.4-0/CDM/R/IRT.se.din.R | 2 CDM-5.4-0/CDM/R/RcppExports.R |only CDM-5.4-0/CDM/R/WaldTest.R | 20 CDM-5.4-0/CDM/R/abs_approx.R | 10 CDM-5.4-0/CDM/R/calc_posterior.R | 18 CDM-5.4-0/CDM/R/cdi.kli.R | 17 CDM-5.4-0/CDM/R/check.input.R | 2 CDM-5.4-0/CDM/R/coef.R | 12 CDM-5.4-0/CDM/R/confint.din.R | 2 CDM-5.4-0/CDM/R/dataframe_summary.R | 18 CDM-5.4-0/CDM/R/deltaMethod.R | 50 - CDM-5.4-0/CDM/R/din.deterministic.R | 2 CDM-5.4-0/CDM/R/din.deterministic_alg.R | 26 CDM-5.4-0/CDM/R/din.partable.R | 2 CDM-5.4-0/CDM/R/din.validate.qmatrix.R | 2 CDM-5.4-0/CDM/R/entropy.lca.R | 2 CDM-5.4-0/CDM/R/gdd.R | 17 CDM-5.4-0/CDM/R/gdina.R | 1 CDM-5.4-0/CDM/R/gdina.dif.R | 2 CDM-5.4-0/CDM/R/gdina.postproc.R | 2 CDM-5.4-0/CDM/R/gdina_designmatrices.R | 2 CDM-5.4-0/CDM/R/gdina_hogdina_alg.R | 2 CDM-5.4-0/CDM/R/gdina_proc_noninvariance_multiple_groups.R | 14 CDM-5.4-0/CDM/R/gdina_proc_sequential_items.R | 8 CDM-5.4-0/CDM/R/gdina_se_itemwise.R | 27 CDM-5.4-0/CDM/R/gdm_algorithm.R | 2 CDM-5.4-0/CDM/R/gdm_postproc.R | 2 CDM-5.4-0/CDM/R/gdm_preproc.R | 2 CDM-5.4-0/CDM/R/ideal.response.pattern.R | 23 CDM-5.4-0/CDM/R/item_by_group.R | 52 - CDM-5.4-0/CDM/R/itemfit.rmsea.R | 4 CDM-5.4-0/CDM/R/itemfit.sx2_aux.R | 4 CDM-5.4-0/CDM/R/jkestimates.R | 2 CDM-5.4-0/CDM/R/label_significance_level.R | 2 CDM-5.4-0/CDM/R/logLik_CDM.R | 2 CDM-5.4-0/CDM/R/logpars2rrumpars.R | 2 CDM-5.4-0/CDM/R/mad_aux.R | 24 CDM-5.4-0/CDM/R/mcdina.R | 2 CDM-5.4-0/CDM/R/mcdina.est.item.R | 2 CDM-5.4-0/CDM/R/mcdina.postproc.R | 2 CDM-5.4-0/CDM/R/mcdina.simul.R | 4 CDM-5.4-0/CDM/R/mcdina_alg_cppcall.R | 20 CDM-5.4-0/CDM/R/mcdina_prepare.R | 2 CDM-5.4-0/CDM/R/md_aux.R | 14 CDM-5.4-0/CDM/R/modelfit.cor.R | 2 CDM-5.4-0/CDM/R/modelfit.cor2.R | 10 CDM-5.4-0/CDM/R/numerical_Hessian.R | 26 CDM-5.4-0/CDM/R/osink.R | 6 CDM-5.4-0/CDM/R/personfit.appropriateness.R | 2 CDM-5.4-0/CDM/R/plot.gdina.R | 2 CDM-5.4-0/CDM/R/plot.gdm.R | 2 CDM-5.4-0/CDM/R/plot.slca.R | 2 CDM-5.4-0/CDM/R/predict.CDM.R | 2 CDM-5.4-0/CDM/R/print.summary.din.R | 2 CDM-5.4-0/CDM/R/rmsd_chisquare.R | 14 CDM-5.4-0/CDM/R/rmsea_aux.R | 24 CDM-5.4-0/CDM/R/rrum.param.R | 2 CDM-5.4-0/CDM/R/rrumpars2logpars.R | 2 CDM-5.4-0/CDM/R/sequential.items.R | 6 CDM-5.4-0/CDM/R/sim.din.R | 2 CDM-5.4-0/CDM/R/skillspace.approximation.R | 2 CDM-5.4-0/CDM/R/skillspace.hierarchy.R | 2 CDM-5.4-0/CDM/R/slca.R | 3 CDM-5.4-0/CDM/R/slca.algorithm.R | 58 - CDM-5.4-0/CDM/R/slca.postprocess.R | 2 CDM-5.4-0/CDM/R/solve_add_ridge.R | 8 CDM-5.4-0/CDM/R/squeeze.cdm.R | 4 CDM-5.4-0/CDM/R/summary.IRT.RMSD_print_statistics.R | 10 CDM-5.4-0/CDM/R/summary.din.R | 2 CDM-5.4-0/CDM/R/summary.gdina.wald.R | 2 CDM-5.4-0/CDM/R/summary.mcdina.R | 2 CDM-5.4-0/CDM/R/summary_sink.R | 2 CDM-5.4-0/CDM/R/vcov.loglike.din.R | 2 CDM-5.4-0/CDM/R/zzz.R | 4 CDM-5.4-0/CDM/data/data.Students.rda |binary CDM-5.4-0/CDM/data/data.cdm01.rda |binary CDM-5.4-0/CDM/data/data.cdm02.rda |binary CDM-5.4-0/CDM/data/data.cdm03.rda |binary CDM-5.4-0/CDM/data/data.cdm04.rda |binary CDM-5.4-0/CDM/data/data.dcm.rda |binary CDM-5.4-0/CDM/data/data.dtmr.rda |binary CDM-5.4-0/CDM/data/data.ecpe.rda |binary CDM-5.4-0/CDM/data/data.fraction1.rda |binary CDM-5.4-0/CDM/data/data.fraction2.rda |binary CDM-5.4-0/CDM/data/data.hr.rda |binary CDM-5.4-0/CDM/data/data.jang.rda |binary CDM-5.4-0/CDM/data/data.melab.rda |binary CDM-5.4-0/CDM/data/data.mg.rda |binary CDM-5.4-0/CDM/data/data.pgdina.rda |binary CDM-5.4-0/CDM/data/data.sda6.rda |binary CDM-5.4-0/CDM/data/data.timss03.G8.su.rda |binary CDM-5.4-0/CDM/data/data.timss07.G4.lee.rda |binary CDM-5.4-0/CDM/data/data.timss11.G4.AUT.part.rda |binary CDM-5.4-0/CDM/data/data.timss11.G4.AUT.rda |binary CDM-5.4-0/CDM/data/fraction.subtraction.data.rda |binary CDM-5.4-0/CDM/data/fraction.subtraction.qmatrix.rda |binary CDM-5.4-0/CDM/data/sim.dina.rda |binary CDM-5.4-0/CDM/data/sim.dino.rda |binary CDM-5.4-0/CDM/data/sim.qmatrix.rda |binary CDM-5.4-0/CDM/inst/CITATION | 8 CDM-5.4-0/CDM/inst/NEWS | 17 CDM-5.4-0/CDM/man/CDM-package.Rd | 430 +++++------ CDM-5.4-0/CDM/man/IRT.IC.Rd | 2 CDM-5.4-0/CDM/man/IRT.RMSD.Rd | 2 CDM-5.4-0/CDM/man/IRT.compareModels.Rd | 20 CDM-5.4-0/CDM/man/IRT.data.Rd | 16 CDM-5.4-0/CDM/man/IRT.expectedCounts.Rd | 12 CDM-5.4-0/CDM/man/IRT.factor.scores.Rd | 8 CDM-5.4-0/CDM/man/IRT.irfprob.Rd | 4 CDM-5.4-0/CDM/man/IRT.irfprobPlot.Rd | 4 CDM-5.4-0/CDM/man/IRT.itemfit.Rd | 2 CDM-5.4-0/CDM/man/IRT.jackknife.Rd | 18 CDM-5.4-0/CDM/man/IRT.likelihood.Rd | 6 CDM-5.4-0/CDM/man/IRT.modelfit.Rd | 8 CDM-5.4-0/CDM/man/IRT.repDesign.Rd | 4 CDM-5.4-0/CDM/man/abs_approx.Rd | 4 CDM-5.4-0/CDM/man/anova.din.Rd | 8 CDM-5.4-0/CDM/man/cdi.kli.Rd | 4 CDM-5.4-0/CDM/man/cdm.est.class.accuracy.Rd | 4 CDM-5.4-0/CDM/man/coef.Rd | 6 CDM-5.4-0/CDM/man/data.dtmr.Rd | 2 CDM-5.4-0/CDM/man/deltaMethod.Rd | 2 CDM-5.4-0/CDM/man/din.Rd | 60 - CDM-5.4-0/CDM/man/din.deterministic.Rd | 8 CDM-5.4-0/CDM/man/din.equivalent.class.Rd | 8 CDM-5.4-0/CDM/man/din.validate.qmatrix.Rd | 4 CDM-5.4-0/CDM/man/entropy.lca.Rd | 12 CDM-5.4-0/CDM/man/equivalent.dina.Rd | 8 CDM-5.4-0/CDM/man/gdd.Rd | 4 CDM-5.4-0/CDM/man/gdina.Rd | 84 +- CDM-5.4-0/CDM/man/gdina.dif.Rd | 4 CDM-5.4-0/CDM/man/gdina.wald.Rd | 4 CDM-5.4-0/CDM/man/gdm.Rd | 52 - CDM-5.4-0/CDM/man/item_by_group.Rd | 4 CDM-5.4-0/CDM/man/itemfit.sx2.Rd | 30 CDM-5.4-0/CDM/man/logLik.Rd | 2 CDM-5.4-0/CDM/man/mcdina.Rd | 16 CDM-5.4-0/CDM/man/modelfit.cor.Rd | 16 CDM-5.4-0/CDM/man/personfit.appropriateness.Rd | 6 CDM-5.4-0/CDM/man/plot.din.Rd | 4 CDM-5.4-0/CDM/man/predict.Rd | 6 CDM-5.4-0/CDM/man/print.summary.din.Rd | 2 CDM-5.4-0/CDM/man/sequential.items.Rd | 4 CDM-5.4-0/CDM/man/sim.din.Rd | 6 CDM-5.4-0/CDM/man/sim.gdina.Rd | 10 CDM-5.4-0/CDM/man/skill.cor.Rd | 2 CDM-5.4-0/CDM/man/skillspace.hierarchy.Rd | 22 CDM-5.4-0/CDM/man/slca.Rd | 24 CDM-5.4-0/CDM/man/summary.din.Rd | 2 CDM-5.4-0/CDM/man/vcov.Rd | 4 CDM-5.4-0/CDM/src/RcppExports.cpp |only CDM-5.4-0/CDM/src/cdm_kli_id_c.cpp | 52 - CDM-5.4-0/CDM/src/din.deterministic.devcrit_c.cpp | 129 ++- CDM-5.4-0/CDM/src/gdd_c.cpp | 105 -- CDM-5.4-0/CDM/src/init.c |only CDM-5.4-0/CDM/src/irt_predict_c.cpp | 59 - CDM-5.4-0/CDM/src/itemfit_sx2_calc_scoredistribution_cdm.cpp | 80 -- CDM-5.4-0/CDM/src/modelfit_cor2_c.cpp | 66 - CDM-5.4-0/CDM/src/probs_multcat_items_counts_c.cpp | 96 -- CDM-5.4-0/CDM/src/slca_cfunctions.cpp | 203 +---- 178 files changed, 1298 insertions(+), 1574 deletions(-)
Title: Bayesian Estimation for Finite Mixture of Distributions
Description: Provides statistical tools for Bayesian estimation for finite mixture of distributions, mainly mixture of Gamma, Normal and t-distributions.
Author: Abdolreza Mohammadi
Maintainer: Abdolreza Mohammadi <a.mohammadi@uvt.nl>
Diff between bmixture versions 0.2 dated 2017-01-26 and 0.3 dated 2017-02-08
DESCRIPTION | 10 +++++----- MD5 | 36 ++++++++++++++++++------------------ NAMESPACE | 12 ++++++++---- R/bmixgamma.R | 1 + R/bmixnorm.R | 37 +++++++++++++++++++------------------ R/bmixt.R | 9 +++------ man/bmixgamma.Rd | 4 +--- man/bmixt.Rd | 2 -- man/plot.bmixgamma.Rd | 4 +--- man/plot.bmixnorm.Rd | 2 +- man/plot.bmixt.Rd | 4 +--- man/print.bmixgamma.Rd | 2 -- man/print.bmixt.Rd | 2 -- man/summary.bmixgamma.Rd | 2 -- man/summary.bmixt.Rd | 2 -- src/bmix_gamma.cpp | 13 ++++++------- src/bmix_norm.cpp | 23 +++++++++++------------ src/bmix_t.cpp | 23 ++++++++++------------- src/dmix_hat_x_seq.cpp | 27 ++++++++++++++------------- 19 files changed, 99 insertions(+), 116 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-22 0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-02 1.0
Title: Estimating a Survival Distribution in the Presence of Dependent
Left Truncation and Right Censoring
Description: A structural transformation model for a latent, quasi-independent
truncation time as a function of the observed dependent truncation
time and the event time, and an unknown dependence parameter.
The dependence parameter is chosen to minimize the conditional
Kendall's tau. The marginal distribution for the
truncation time and the event time are completely left unspecified.
Author: Sy Han (Steven) Chiou
Maintainer: Sy Han (Steven) Chiou <schiou@hsph.harvard.edu>
Diff between tranSurv versions 1.0-0 dated 2016-07-18 and 1.1-4 dated 2017-02-08
DESCRIPTION | 10 +- MD5 | 16 +-- NAMESPACE | 5 - R/summary.R | 12 ++ R/tranSurvfit.R | 219 ++++++++++++++++++++++++++++++++---------------- man/pmcc.Rd |only man/tranSurv-package.Rd | 4 man/tranSurv.control.Rd |only man/tranSurvfit.Rd | 5 - src/getKendall.c | 30 ++++++ 10 files changed, 213 insertions(+), 88 deletions(-)
Title: Tools to Visualize, Manipulate, and Summarize MCMC Output
Description: Performs key functions for MCMC analysis using minimal code - visualizes, manipulates, and summarizes MCMC output. Functions support simple and straightforward subsetting of model parameters within the calls, and produce presentable and 'publication-ready' output. MCMC output may be derived from Bayesian model output fit with JAGS, Stan, or other MCMC samplers.
Author: Casey Youngflesh
Maintainer: Casey Youngflesh <caseyyoungflesh@gmail.com>
Diff between MCMCvis versions 0.7.0 dated 2017-01-05 and 0.7.1 dated 2017-02-08
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 7 ++++++- R/MCMCplot.R | 41 +++++++++++++++++++++++++---------------- R/MCMCsummary.R | 4 ++-- inst/doc/MCMCvis.html | 2 +- man/MCMC_data.Rd | 1 - man/MCMCchains.Rd | 2 +- man/MCMCplot.Rd | 2 +- man/MCMCsummary.Rd | 2 +- man/MCMCtrace.Rd | 2 +- 11 files changed, 52 insertions(+), 39 deletions(-)
Title: Financial Analysis and Regression Diagnostic Analysis
Description: Functions for financial analysis and financial modeling,
including batch graphs generation, beta calculation,
descriptive statistics, annuity calculation, bond pricing
and financial data download.
Author: Xuanhua(Peter) Yin <peteryin.sju@hotmail.com>
Maintainer: Xuanhua(Peter) Yin <peteryin.sju@hotmail.com>
Diff between FinAna versions 0.1.0 dated 2016-11-09 and 0.1.1 dated 2017-02-08
FinAna-0.1.0/FinAna/R/findmode.R |only FinAna-0.1.0/FinAna/R/lmplot.R |only FinAna-0.1.0/FinAna/man/findmode.Rd |only FinAna-0.1.0/FinAna/man/lmplot.Rd |only FinAna-0.1.1/FinAna/DESCRIPTION | 15 ++- FinAna-0.1.1/FinAna/MD5 | 60 +++++++++----- FinAna-0.1.1/FinAna/NAMESPACE | 3 FinAna-0.1.1/FinAna/NEWS | 56 +++++++++---- FinAna-0.1.1/FinAna/R/annu.fv.R |only FinAna-0.1.1/FinAna/R/annu.pv.R |only FinAna-0.1.1/FinAna/R/annu.pv.df.R |only FinAna-0.1.1/FinAna/R/betaf.R | 100 ++++++++++++------------ FinAna-0.1.1/FinAna/R/bond.price.R |only FinAna-0.1.1/FinAna/R/corm.R | 46 +++++------ FinAna-0.1.1/FinAna/R/desc.R | 64 ++++++++------- FinAna-0.1.1/FinAna/R/get.mode.R |only FinAna-0.1.1/FinAna/R/get.price.google.R |only FinAna-0.1.1/FinAna/R/get.price.yahoo.R |only FinAna-0.1.1/FinAna/R/kur.R | 42 +++++----- FinAna-0.1.1/FinAna/R/plotfhs.R | 113 ++++++++++++++-------------- FinAna-0.1.1/FinAna/R/ploth.R | 68 ++++++++-------- FinAna-0.1.1/FinAna/R/plotsm.R |only FinAna-0.1.1/FinAna/R/plotts.R |only FinAna-0.1.1/FinAna/R/rr.R | 40 ++++----- FinAna-0.1.1/FinAna/R/sk.R | 60 +++++++------- FinAna-0.1.1/FinAna/man/annu.fv.Rd |only FinAna-0.1.1/FinAna/man/annu.pv.Rd |only FinAna-0.1.1/FinAna/man/annu.pv.df.Rd |only FinAna-0.1.1/FinAna/man/betaf.Rd | 44 +++++----- FinAna-0.1.1/FinAna/man/bond.price.Rd |only FinAna-0.1.1/FinAna/man/corm.Rd | 36 ++++---- FinAna-0.1.1/FinAna/man/desc.Rd | 36 ++++---- FinAna-0.1.1/FinAna/man/get.price.google.Rd |only FinAna-0.1.1/FinAna/man/get.price.yahoo.Rd |only FinAna-0.1.1/FinAna/man/getmode.Rd |only FinAna-0.1.1/FinAna/man/kur.Rd | 36 ++++---- FinAna-0.1.1/FinAna/man/ploth.Rd | 40 ++++----- FinAna-0.1.1/FinAna/man/ploths.Rd | 48 +++++------ FinAna-0.1.1/FinAna/man/plotsm.Rd |only FinAna-0.1.1/FinAna/man/plotts.Rd |only FinAna-0.1.1/FinAna/man/rr.Rd | 38 ++++----- FinAna-0.1.1/FinAna/man/sk.Rd | 40 ++++----- 42 files changed, 517 insertions(+), 468 deletions(-)
Title: Advanced Fire History Analysis in R
Description: Basic tools to analyze forest fire history data (e.g. FHX2) in R.
Author: Steven Malevich [aut, cre],
Christopher Guiterman [ctb],
Ellis Margolis [ctb]
Maintainer: Steven Malevich <malevich@email.arizona.edu>
Diff between burnr versions 0.1.1 dated 2016-08-26 and 0.1.2 dated 2017-02-08
DESCRIPTION | 8 MD5 | 87 +++---- NEWS.md | 14 + R/io.R | 25 +- R/utils.R | 2 README.md | 4 build/vignette.rds |binary inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 521 +++++++++++++++++++++++++++++++-------------- man/check_duplicates.Rd | 1 man/composite.Rd | 1 man/count_fire.Rd | 1 man/count_injury.Rd | 1 man/count_recording.Rd | 1 man/count_year_span.Rd | 1 man/delete.Rd | 1 man/fhx.Rd | 1 man/find_recording.Rd | 1 man/first_year.Rd | 1 man/get_event_years.Rd | 1 man/get_ggplot.Rd | 1 man/get_series.Rd | 1 man/get_year.Rd | 1 man/inner_type.Rd | 1 man/is.fhx.Rd | 1 man/last_year.Rd | 1 man/lgr2.Rd | 1 man/lgr2_meta.Rd | 1 man/mean_interval.Rd | 1 man/outer_type.Rd | 1 man/pgm.Rd | 1 man/pgm_meta.Rd | 1 man/plot.fhx.Rd | 1 man/plot_demograph.Rd | 1 man/plus-.fhx.Rd | 1 man/read_fhx.Rd | 6 man/run_sea.Rd | 1 man/sample_depth.Rd | 1 man/series_names.Rd | 1 man/series_stats.Rd | 1 man/sort.fhx.Rd | 1 man/write_fhx.Rd | 1 man/yearly_recording.Rd | 1 tests/testthat/test-io.r |only vignettes/introduction.Rmd | 2 45 files changed, 452 insertions(+), 252 deletions(-)