Title: Stereo Camera Calibration and Reconstruction
Description: Functions for the collection of 3D points and curves using a stereo camera setup.
Author: Aaron Olsen, Annat Haber
Maintainer: Aaron Olsen <aarolsen@gmail.com>
Diff between StereoMorph versions 1.5.1 dated 2016-06-06 and 1.6 dated 2017-02-13
StereoMorph-1.5.1/StereoMorph/inst/extdata/apps/digitizeImage |only StereoMorph-1.6/StereoMorph/DESCRIPTION | 12 StereoMorph-1.6/StereoMorph/MD5 | 88 +- StereoMorph-1.6/StereoMorph/R/RcppExports.R | 2 StereoMorph-1.6/StereoMorph/R/TPSToShapes.R |only StereoMorph-1.6/StereoMorph/R/avectors.R | 2 StereoMorph-1.6/StereoMorph/R/calibrateCameras.R | 324 ++++++-- StereoMorph-1.6/StereoMorph/R/check_system_command_SM.R |only StereoMorph-1.6/StereoMorph/R/createErrorPlots.R | 24 StereoMorph-1.6/StereoMorph/R/digitizeImage.R | 388 ---------- StereoMorph-1.6/StereoMorph/R/digitizeImages.R | 18 StereoMorph-1.6/StereoMorph/R/distortionError.R | 17 StereoMorph-1.6/StereoMorph/R/dltEpipolarLine.R | 2 StereoMorph-1.6/StereoMorph/R/dltTestCalibration.R | 62 + StereoMorph-1.6/StereoMorph/R/epipolarBezier.R |only StereoMorph-1.6/StereoMorph/R/estimateDLTCoefficients.R | 2 StereoMorph-1.6/StereoMorph/R/estimateDistortion.R | 68 - StereoMorph-1.6/StereoMorph/R/estimateUndistortion.R |only StereoMorph-1.6/StereoMorph/R/extractFrames.R |only StereoMorph-1.6/StereoMorph/R/findCheckerboardCorners.R | 5 StereoMorph-1.6/StereoMorph/R/findInterpointDistanceError.R | 13 StereoMorph-1.6/StereoMorph/R/matchCurvePoints.R | 2 StereoMorph-1.6/StereoMorph/R/process_digitize_images_input.R | 67 + StereoMorph-1.6/StereoMorph/R/readTPS.R |only StereoMorph-1.6/StereoMorph/R/read_video_info.R |only StereoMorph-1.6/StereoMorph/R/reconstructStereoSets.R | 19 StereoMorph-1.6/StereoMorph/R/reflectMissingLandmarks.R | 2 StereoMorph-1.6/StereoMorph/R/undistort.R | 10 StereoMorph-1.6/StereoMorph/R/undistortShapes.R |only StereoMorph-1.6/StereoMorph/R/undistortionError.R |only StereoMorph-1.6/StereoMorph/R/uvector_SM.R | 2 StereoMorph-1.6/StereoMorph/R/writeLMToTPS.R |only StereoMorph-1.6/StereoMorph/inst/CITATION | 4 StereoMorph-1.6/StereoMorph/inst/extdata/apps/digitizeImages/server.R | 88 +- StereoMorph-1.6/StereoMorph/inst/extdata/apps/digitizeImages/session_parameters.txt | 2 StereoMorph-1.6/StereoMorph/inst/extdata/apps/digitizeImages/www/digitize_image.js | 153 ++- StereoMorph-1.6/StereoMorph/man/StereoMorph-package.Rd | 16 StereoMorph-1.6/StereoMorph/man/calibrateCameras.Rd | 2 StereoMorph-1.6/StereoMorph/man/digitizeImage.Rd | 86 -- StereoMorph-1.6/StereoMorph/man/digitizeImages.Rd | 4 StereoMorph-1.6/StereoMorph/man/dltTestCalibration.Rd | 3 StereoMorph-1.6/StereoMorph/man/findCheckerboardCorners.Rd | 5 StereoMorph-1.6/StereoMorph/man/reconstructStereoSets.Rd | 2 StereoMorph-1.6/StereoMorph/src/RcppExports.cpp | 98 +- StereoMorph-1.6/StereoMorph/src/generateQuads.cpp | 4 45 files changed, 776 insertions(+), 820 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible toolset for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre, cph],
Kohei Watanabe [ctb],
Paul Nulty [ctb],
Adam Obeng [ctb],
Haiyan Wang [ctb],
Benjamin Lauderdale [ctb],
Will Lowe [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.9.9-22 dated 2017-02-08 and 0.9.9-24 dated 2017-02-13
DESCRIPTION | 34 ++-- MD5 | 294 ++++++++++++++++++------------------- R/RcppExports.R | 4 R/readtext-methods.R | 6 R/tokens.R | 2 R/zzz.R | 2 inst/doc/LitVignette.html | 6 inst/doc/plotting.html | 6 inst/doc/quickstart.R | 10 - inst/doc/quickstart.Rmd | 22 +- inst/doc/quickstart.html | 39 ++-- man/View.Rd | 3 man/applyDictionary.Rd | 5 man/as.corpus.Rd | 1 man/as.corpus.corpuszip.Rd | 1 man/as.list.dist.Rd | 1 man/as.matrix.dfm.Rd | 3 man/as.tokens.Rd | 5 man/cbind.dfm.Rd | 1 man/changeunits.Rd | 1 man/char_tolower.Rd | 1 man/collocations.Rd | 7 man/compress.Rd | 1 man/convert-wrappers.Rd | 5 man/convert.Rd | 1 man/corpus-class.Rd | 11 - man/corpus.Rd | 8 - man/corpus_reshape.Rd | 1 man/corpus_sample.Rd | 1 man/corpus_segment.Rd | 3 man/corpus_subset.Rd | 1 man/data-deprecated.Rd | 9 - man/data-internal.Rd | 6 man/data_char_mobydick.Rd | 1 man/data_char_sampletext.Rd | 1 man/data_char_ukimmig2010.Rd | 1 man/data_corpus_inaugural.Rd | 3 man/data_corpus_irishbudget2010.Rd | 1 man/data_dfm_LBGexample.Rd | 1 man/deprecated-textstat.Rd | 1 man/dfm-class.Rd | 34 ++-- man/dfm.Rd | 1 man/dfm2lsa.Rd | 1 man/dfm_compress.Rd | 1 man/dfm_lookup.Rd | 1 man/dfm_sample.Rd | 1 man/dfm_select.Rd | 5 man/dfm_sort.Rd | 1 man/dfm_tolower.Rd | 1 man/dfm_trim.Rd | 7 man/dfm_weight.Rd | 9 - man/dictionary-class.Rd | 2 man/dictionary.Rd | 1 man/docfreq.Rd | 1 man/docnames.Rd | 1 man/docvars.Rd | 1 man/fcm-class.Rd | 2 man/fcm.Rd | 12 - man/fcm_sort.Rd | 1 man/featnames.Rd | 1 man/features.Rd | 1 man/head.dfm.Rd | 1 man/is.collocations.Rd | 1 man/is.dfm.Rd | 3 man/is.dictionary.Rd | 1 man/joinTokens.Rd | 1 man/keyness.Rd | 1 man/kwic.Rd | 5 man/kwic_old.Rd | 1 man/kwic_split.Rd | 1 man/metacorpus.Rd | 1 man/metadoc.Rd | 1 man/ndoc.Rd | 1 man/ngrams.Rd | 1 man/nscrabble.Rd | 1 man/nsentence.Rd | 1 man/nsyllable.Rd | 1 man/ntoken.Rd | 1 man/phrasetotoken.Rd | 5 man/plot-deprecated.Rd | 1 man/predict.textmodel.Rd | 1 man/print.dfm.Rd | 5 man/quanteda-package.Rd | 22 ++ man/reassign_attributes.Rd | 1 man/removeFeatures.Rd | 7 man/sample.Rd | 3 man/scrabble.Rd | 1 man/segment.Rd | 1 man/selectFeatures.Rd | 3 man/selectFeaturesOLD.Rd | 5 man/sequence2list.Rd | 1 man/sequences.Rd | 7 man/settings.Rd | 5 man/similarity.Rd | 3 man/sort.dfm.Rd | 1 man/sparsity.Rd | 1 man/stopwords.Rd | 2 man/subset.corpus.Rd | 1 man/summary.corpus.Rd | 1 man/syllables.Rd | 1 man/textfile.Rd | 5 man/textmodel-internal.Rd | 20 +- man/textmodel.Rd | 2 man/textmodel_NB.Rd | 2 man/textmodel_ca.Rd | 1 man/textmodel_fitted-class.Rd | 2 man/textmodel_wordfish.Rd | 7 man/textmodel_wordscores.Rd | 9 - man/textmodel_wordshoal.Rd | 7 man/textplot_scale1d.Rd | 7 man/textplot_wordcloud.Rd | 1 man/textplot_xray.Rd | 1 man/texts.Rd | 3 man/textstat_keyness.Rd | 1 man/textstat_lexdiv.Rd | 9 - man/textstat_readability.Rd | 1 man/textstat_simil.Rd | 7 man/tf.Rd | 7 man/tfidf.Rd | 1 man/toLower.Rd | 11 - man/tokenize.Rd | 18 +- man/tokens.Rd | 2 man/tokens_compound.Rd | 1 man/tokens_hash.Rd | 1 man/tokens_hashed_recompile.Rd | 1 man/tokens_lookup.Rd | 1 man/tokens_ngrams.Rd | 9 - man/tokens_select.Rd | 3 man/tokens_tolower.Rd | 1 man/tokens_wordstem.Rd | 3 man/topfeatures.Rd | 1 man/trim.Rd | 1 man/valuetype.Rd | 1 man/vector2list.Rd | 1 man/weight.Rd | 3 man/wordstem.Rd | 5 src/RcppExports.cpp | 12 - src/dist_mt.cpp | 33 ---- src/quanteda.h | 19 +- src/tokens_compound_mt.cpp | 31 ++- src/tokens_detect_mt.cpp | 13 - src/tokens_lookup_mt.cpp | 6 src/tokens_match_mt.cpp | 13 - src/tokens_ngrams_mt.cpp | 6 src/tokens_replace_mt.cpp | 14 - src/tokens_select_mt.cpp | 13 - src/utility.cpp | 18 +- vignettes/quickstart.Rmd | 22 +- 148 files changed, 462 insertions(+), 590 deletions(-)
Title: The MCFS-ID Algorithm for Feature Selection and Interdependency
Discovery
Description: MCFS-ID (Monte Carlo Feature Selection and Interdependency Discovery) is a
Monte Carlo method-based tool for feature selection. It also allows for the discovery of interdependencies between the relevant features. MCFS-ID is particularly suitable for the analysis of high-dimensional, 'small n large p' transactional and biological data.
Author: Michal Draminski [aut, cre],
Jacek Koronacki [aut],
Julian Zubek [ctb]
Maintainer: Michal Draminski <michal.draminski@ipipan.waw.pl>
Diff between rmcfs versions 1.1.2 dated 2016-10-25 and 1.2.2 dated 2017-02-13
rmcfs-1.1.2/rmcfs/java/src/dmLab/mcfs/MCFSFinalCV.java |only rmcfs-1.1.2/rmcfs/java/src/dmLab/mcfs/cutoffMethods/ContrastAttributesCutoff.java |only rmcfs-1.2.2/rmcfs/DESCRIPTION | 12 rmcfs-1.2.2/rmcfs/MD5 | 196 +-- rmcfs-1.2.2/rmcfs/NAMESPACE | 5 rmcfs-1.2.2/rmcfs/NEWS | 223 +-- rmcfs-1.2.2/rmcfs/R/rmcfs.R | 525 +++------ rmcfs-1.2.2/rmcfs/R/rmcfs.io.R |only rmcfs-1.2.2/rmcfs/R/rmcfs.plot.R | 301 +++-- rmcfs-1.2.2/rmcfs/R/utils.R | 85 + rmcfs-1.2.2/rmcfs/inst/CITATION | 4 rmcfs-1.2.2/rmcfs/inst/cfg/m5.cfg |only rmcfs-1.2.2/rmcfs/inst/java/dmLab.jar |binary rmcfs-1.2.2/rmcfs/java/README | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/DMLabInfo.java | 10 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/Array.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/FArray.java | 20 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/functions/DiscFunctions.java | 3 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/functions/ExtFunctions.java | 8 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/functions/SelectFunctions.java | 46 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/loader/File2Array.java | 144 +- rmcfs-1.2.2/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoader.java | 259 +--- rmcfs-1.2.2/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoaderADH.java |only rmcfs-1.2.2/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoaderADX.java | 207 ++- rmcfs-1.2.2/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoaderArff.java | 49 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/loader/fileLoader/FileLoaderCSV.java | 189 ++- rmcfs-1.2.2/rmcfs/java/src/dmLab/array/loader/fileLoader/FileType.java | 73 - rmcfs-1.2.2/rmcfs/java/src/dmLab/array/meta/Attribute.java | 18 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/meta/AttributeDef.java |only rmcfs-1.2.2/rmcfs/java/src/dmLab/array/saver/Array2ADH.java |only rmcfs-1.2.2/rmcfs/java/src/dmLab/array/saver/Array2ADX.java | 4 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/saver/Array2CSV.java | 4 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/saver/Array2File.java | 11 rmcfs-1.2.2/rmcfs/java/src/dmLab/array/saver/Array2String.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/Params.java | 34 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/PredictionResult.java | 4 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/WekaTree.java | 6 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/ADXClassifier.java | 59 - rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/complex/Complex.java | 16 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/complex/ComplexSet.java | 10 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/complex/complexLinks/ComplexLink.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/complex/complexLinks/ComplexLinks.java | 6 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/ruleFamily/Coverage.java | 6 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/ruleFamily/RuleFamily.java | 38 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/ruleSet/RuleSet.java | 30 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/selector/Selector.java | 6 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/adx/selector/SelectorList.java | 6 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/ensemble/EnsembleClassifier.java | 19 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/j48/J48Classifier.java | 6 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/rnd/RNDClassifier.java | 18 rmcfs-1.2.2/rmcfs/java/src/dmLab/classifier/sliq/SliqClassifier.java | 7 rmcfs-1.2.2/rmcfs/java/src/dmLab/discretizer/DiscretizerParams.java | 11 rmcfs-1.2.2/rmcfs/java/src/dmLab/experiment/ExperimentParams.java | 33 rmcfs-1.2.2/rmcfs/java/src/dmLab/experiment/classification/ClassificationBody.java | 43 rmcfs-1.2.2/rmcfs/java/src/dmLab/experiment/classification/ClassificationParams.java | 29 rmcfs-1.2.2/rmcfs/java/src/dmLab/experiment/discretization/DiscretizationBody.java | 53 rmcfs-1.2.2/rmcfs/java/src/dmLab/experiment/discretization/DiscretizationParams.java | 3 rmcfs-1.2.2/rmcfs/java/src/dmLab/experiment/ensembleOptimization/EnsembleExperiment.java | 10 rmcfs-1.2.2/rmcfs/java/src/dmLab/gui/chartPanel/MyLineChart.java | 4 rmcfs-1.2.2/rmcfs/java/src/dmLab/gui/dataEditor/ContainerOperations.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/gui/dataEditor/EditorBody.java | 9 rmcfs-1.2.2/rmcfs/java/src/dmLab/gui/dataEditor/panels/AttrFilterPanel.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/gui/graphViewer/GraphViewerBody.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/gui/graphViewer/visualization/GraphVisualization.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/gui/mainWindow/MCFSPanel.java | 89 - rmcfs-1.2.2/rmcfs/java/src/dmLab/gui/mainWindow/MainWindow.java | 3 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/MCFS.java | 52 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/MCFSParams.java | 381 +++--- rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/attributesID/DependencyFactors.java | 1 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/attributesRI/AttributesRI.java | 8 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/cutoffMethods/ContrastCutoff.java |only rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/cutoffMethods/CriticalAngleCutoff.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/cutoffMethods/Cutoff.java | 38 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/cutoffMethods/KMeansCutoff.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/MCFSAutoParams.java |only rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/MCFSExperiment.java | 575 +++++----- rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/MCFSFinalCV.java |only rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/arrays/MCFSArrays.java | 17 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/framework/GlobalStats.java | 60 - rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/framework/MCFSClassic.java | 7 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/framework/MCFSFramework.java | 367 +++--- rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/framework/MCFSPermutation.java | 16 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/modules/Projection.java | 33 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/mcfsEngine/modules/Split.java | 26 rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/tree/Tree.java | 184 +-- rmcfs-1.2.2/rmcfs/java/src/dmLab/mcfs/tree/TreeNode.java | 2 rmcfs-1.2.2/rmcfs/java/src/dmLab/utils/FileUtils.java | 177 ++- rmcfs-1.2.2/rmcfs/java/src/dmLab/utils/GeneralUtils.java | 26 rmcfs-1.2.2/rmcfs/java/src/dmLab/utils/ProgressCounter.java |only rmcfs-1.2.2/rmcfs/java/src/dmLab/utils/StringUtils.java | 12 rmcfs-1.2.2/rmcfs/java/src/dmLab/utils/cmatrix/ConfusionMatrix.java | 8 rmcfs-1.2.2/rmcfs/man/artificial.data.Rd | 8 rmcfs-1.2.2/rmcfs/man/build.idgraph.Rd | 18 rmcfs-1.2.2/rmcfs/man/export.result.Rd | 15 rmcfs-1.2.2/rmcfs/man/filter.data.Rd | 11 rmcfs-1.2.2/rmcfs/man/fix.data.Rd | 29 rmcfs-1.2.2/rmcfs/man/import.result.Rd | 9 rmcfs-1.2.2/rmcfs/man/mcfs.Rd | 110 - rmcfs-1.2.2/rmcfs/man/plot.idgraph.Rd | 17 rmcfs-1.2.2/rmcfs/man/plot.mcfs.Rd | 48 rmcfs-1.2.2/rmcfs/man/print.mcfs.Rd | 7 rmcfs-1.2.2/rmcfs/man/read.adh.Rd |only rmcfs-1.2.2/rmcfs/man/read.adx.Rd |only rmcfs-1.2.2/rmcfs/man/write.adh.Rd |only rmcfs-1.2.2/rmcfs/man/write.adx.Rd | 5 rmcfs-1.2.2/rmcfs/man/write.arff.Rd | 5 106 files changed, 2725 insertions(+), 2521 deletions(-)
Title: Retrieval, Analysis, and Anomaly Calculation of Daily Hydrologic
Time Series Data
Description: Imports U.S. Geological Survey (USGS) daily hydrologic data from USGS web services (see <https://waterservices.usgs.gov/> for more information), plots the data, addresses some common data problems, and calculates and plots anomalies.
Author: Karen R. Ryberg and Aldo V. Vecchia
Maintainer: Karen R. Ryberg <kryberg@usgs.gov>
Diff between waterData versions 1.0.5 dated 2017-01-04 and 1.0.6 dated 2017-02-13
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS | 4 ++++ R/waterData-package.R | 4 ++-- build/vignette.rds |binary data/exampleWaterData.RData |binary inst/doc/vignette.pdf |binary man/waterData-package.Rd | 4 ++-- 8 files changed, 20 insertions(+), 16 deletions(-)
Title: Set of Common Tools for Forecast Verification
Description: Set of tools to verify forecasts through the computation of typical prediction scores against one or more observational datasets or reanalyses (a reanalysis being a physical extrapolation of observations that relies on the equations from a model, not a pure observational dataset). Intended for seasonal to decadal climate forecasts although can be useful to verify other kinds of forecasts. The package can be helpful in climate sciences for other purposes than forecasting.
Author: Virginie Guemas [aut],
Nicolau Manubens [aut, cre],
Javier Garcia-Serrano [aut],
Neven Fuckar [aut],
Luis Rodrigues [aut],
Louis-Philippe Caron [aut],
Omar Bellprat [aut],
Veronica Torralba [aut],
Alasdair Hunter [aut],
Chloe Prodhomme [aut],
Constantin Ardilouze [aut],
Lauriane Batte [aut],
Martin Menegoz [aut],
Fabian Lienert [aut],
Nube Gonzalez [aut],
Ludovic Auger [aut],
Isabel Andreu-Burillo [aut],
Ramiro Saurral [aut]
Maintainer: Nicolau Manubens <nicolau.manubens@bsc.es>
Diff between s2dverification versions 2.5.0 dated 2016-02-17 and 2.8.0 dated 2017-02-13
s2dverification-2.5.0/s2dverification/R/CRPS.R |only s2dverification-2.5.0/s2dverification/R/clim.colors.R |only s2dverification-2.5.0/s2dverification/man/CRPS.Rd |only s2dverification-2.5.0/s2dverification/man/clim.colors.Rd |only s2dverification-2.8.0/s2dverification/DESCRIPTION | 51 s2dverification-2.8.0/s2dverification/MD5 | 200 +- s2dverification-2.8.0/s2dverification/NAMESPACE | 7 s2dverification-2.8.0/s2dverification/R/ACC.R | 19 s2dverification-2.8.0/s2dverification/R/AnimateMap.R |only s2dverification-2.8.0/s2dverification/R/Ano.R | 8 s2dverification-2.8.0/s2dverification/R/ArrayToNetCDF.R |only s2dverification-2.8.0/s2dverification/R/BrierScore.R |only s2dverification-2.8.0/s2dverification/R/CDORemap.R |only s2dverification-2.8.0/s2dverification/R/Clim.R | 4 s2dverification-2.8.0/s2dverification/R/Cluster.R |only s2dverification-2.8.0/s2dverification/R/ColorBar.R | 460 +++++- s2dverification-2.8.0/s2dverification/R/Composite.R |only s2dverification-2.8.0/s2dverification/R/ConfigApplyMatchingEntries.R | 26 s2dverification-2.8.0/s2dverification/R/ConfigFileCreate.R | 2 s2dverification-2.8.0/s2dverification/R/ConfigFileOpen.R | 8 s2dverification-2.8.0/s2dverification/R/ConfigShowTable.R | 12 s2dverification-2.8.0/s2dverification/R/Corr.R | 132 + s2dverification-2.8.0/s2dverification/R/EOF.R |only s2dverification-2.8.0/s2dverification/R/Enlarge.R | 33 s2dverification-2.8.0/s2dverification/R/Histo2Hindcast.R | 8 s2dverification-2.8.0/s2dverification/R/IniListDims.R | 15 s2dverification-2.8.0/s2dverification/R/InsertDim.R | 69 s2dverification-2.8.0/s2dverification/R/Load.R | 505 ++++-- s2dverification-2.8.0/s2dverification/R/MeanListDim.R | 16 s2dverification-2.8.0/s2dverification/R/NAO.R |only s2dverification-2.8.0/s2dverification/R/Plot2VarsVsLTime.R | 36 s2dverification-2.8.0/s2dverification/R/PlotACC.R | 33 s2dverification-2.8.0/s2dverification/R/PlotAno.R | 55 s2dverification-2.8.0/s2dverification/R/PlotBoxWhisker.R |only s2dverification-2.8.0/s2dverification/R/PlotClim.R | 34 s2dverification-2.8.0/s2dverification/R/PlotEquiMap.R | 764 +++++++--- s2dverification-2.8.0/s2dverification/R/PlotLayout.R |only s2dverification-2.8.0/s2dverification/R/PlotSection.R | 31 s2dverification-2.8.0/s2dverification/R/PlotStereoMap.R | 468 +++++- s2dverification-2.8.0/s2dverification/R/PlotVsLTime.R | 44 s2dverification-2.8.0/s2dverification/R/ProbBins.R | 152 + s2dverification-2.8.0/s2dverification/R/ProjectField.R |only s2dverification-2.8.0/s2dverification/R/RMS.R | 97 - s2dverification-2.8.0/s2dverification/R/RMSSS.R | 85 - s2dverification-2.8.0/s2dverification/R/RatioRMS.R | 91 - s2dverification-2.8.0/s2dverification/R/RatioSDRMS.R | 85 - s2dverification-2.8.0/s2dverification/R/SVD.R |only s2dverification-2.8.0/s2dverification/R/Smoothing.R | 132 + s2dverification-2.8.0/s2dverification/R/Spread.R | 156 +- s2dverification-2.8.0/s2dverification/R/StatSeasAtlHurr.R |only s2dverification-2.8.0/s2dverification/R/Subset.R |only s2dverification-2.8.0/s2dverification/R/ToyModel.R |only s2dverification-2.8.0/s2dverification/R/Trend.R | 62 s2dverification-2.8.0/s2dverification/R/UltimateBrier.R |only s2dverification-2.8.0/s2dverification/R/Utils.R | 577 +++++++ s2dverification-2.8.0/s2dverification/R/clim.palette.R |only s2dverification-2.8.0/s2dverification/data/sampleMap.RData |binary s2dverification-2.8.0/s2dverification/data/sampleTimeSeries.RData |binary s2dverification-2.8.0/s2dverification/inst/config/BSC.conf | 316 ---- s2dverification-2.8.0/s2dverification/inst/doc/plot_maps.R | 279 ++- s2dverification-2.8.0/s2dverification/inst/doc/plot_timeseries.R | 226 ++ s2dverification-2.8.0/s2dverification/man/ACC.Rd | 83 - s2dverification-2.8.0/s2dverification/man/AnimateMap.Rd |only s2dverification-2.8.0/s2dverification/man/Ano_CrossValid.Rd | 2 s2dverification-2.8.0/s2dverification/man/ArrayToNetCDF.Rd |only s2dverification-2.8.0/s2dverification/man/BrierScore.Rd |only s2dverification-2.8.0/s2dverification/man/CDORemap.Rd |only s2dverification-2.8.0/s2dverification/man/Clim.Rd | 12 s2dverification-2.8.0/s2dverification/man/Cluster.Rd |only s2dverification-2.8.0/s2dverification/man/ColorBar.Rd | 115 + s2dverification-2.8.0/s2dverification/man/Composite.Rd |only s2dverification-2.8.0/s2dverification/man/ConfigFileOpen.Rd | 8 s2dverification-2.8.0/s2dverification/man/Consist_Trend.Rd | 6 s2dverification-2.8.0/s2dverification/man/Corr.Rd | 130 + s2dverification-2.8.0/s2dverification/man/EOF.Rd |only s2dverification-2.8.0/s2dverification/man/Enlarge.Rd | 5 s2dverification-2.8.0/s2dverification/man/Eno.Rd | 4 s2dverification-2.8.0/s2dverification/man/EnoNew.Rd | 11 s2dverification-2.8.0/s2dverification/man/Filter.Rd | 6 s2dverification-2.8.0/s2dverification/man/FitAcfCoef.Rd | 4 s2dverification-2.8.0/s2dverification/man/FitAutocor.Rd | 4 s2dverification-2.8.0/s2dverification/man/GenSeries.Rd | 2 s2dverification-2.8.0/s2dverification/man/Histo2Hindcast.Rd | 4 s2dverification-2.8.0/s2dverification/man/IniListDims.Rd | 9 s2dverification-2.8.0/s2dverification/man/InsertDim.Rd | 9 s2dverification-2.8.0/s2dverification/man/LeapYear.Rd | 4 s2dverification-2.8.0/s2dverification/man/Load.Rd | 61 s2dverification-2.8.0/s2dverification/man/Mean1Dim.Rd | 8 s2dverification-2.8.0/s2dverification/man/MeanListDim.Rd | 13 s2dverification-2.8.0/s2dverification/man/NAO.Rd |only s2dverification-2.8.0/s2dverification/man/Plot2VarsVsLTime.Rd | 33 s2dverification-2.8.0/s2dverification/man/PlotACC.Rd | 67 s2dverification-2.8.0/s2dverification/man/PlotAno.Rd | 50 s2dverification-2.8.0/s2dverification/man/PlotBoxWhisker.Rd |only s2dverification-2.8.0/s2dverification/man/PlotClim.Rd | 31 s2dverification-2.8.0/s2dverification/man/PlotEquiMap.Rd | 248 ++- s2dverification-2.8.0/s2dverification/man/PlotLayout.Rd |only s2dverification-2.8.0/s2dverification/man/PlotSection.Rd | 28 s2dverification-2.8.0/s2dverification/man/PlotStereoMap.Rd | 138 + s2dverification-2.8.0/s2dverification/man/PlotVsLTime.Rd | 33 s2dverification-2.8.0/s2dverification/man/ProbBins.Rd | 70 s2dverification-2.8.0/s2dverification/man/ProjectField.Rd |only s2dverification-2.8.0/s2dverification/man/RMS.Rd | 64 s2dverification-2.8.0/s2dverification/man/RMSSS.Rd | 59 s2dverification-2.8.0/s2dverification/man/RatioRMS.Rd | 112 - s2dverification-2.8.0/s2dverification/man/RatioSDRMS.Rd | 63 s2dverification-2.8.0/s2dverification/man/Regression.Rd | 42 s2dverification-2.8.0/s2dverification/man/SVD.Rd |only s2dverification-2.8.0/s2dverification/man/Season.Rd | 8 s2dverification-2.8.0/s2dverification/man/SelIndices.Rd | 10 s2dverification-2.8.0/s2dverification/man/Smoothing.Rd | 6 s2dverification-2.8.0/s2dverification/man/Spectrum.Rd | 2 s2dverification-2.8.0/s2dverification/man/Spread.Rd | 12 s2dverification-2.8.0/s2dverification/man/StatSeasAtlHurr.Rd |only s2dverification-2.8.0/s2dverification/man/Subset.Rd |only s2dverification-2.8.0/s2dverification/man/ToyModel.Rd |only s2dverification-2.8.0/s2dverification/man/Trend.Rd | 40 s2dverification-2.8.0/s2dverification/man/UltimateBrier.Rd |only s2dverification-2.8.0/s2dverification/man/clim.palette.Rd |only s2dverification-2.8.0/s2dverification/man/s2dverification.Rd | 6 120 files changed, 4977 insertions(+), 1943 deletions(-)
More information about s2dverification at CRAN
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Title: Estimating Disease Prevalence from Registry Data
Description: Estimates disease prevalence for a given index date, using existing
registry data extended with Monte Carlo simulations.
Author: Simon Crouch [aut],
Stephanie Lax [aut],
Stuart Lacy [cre, aut]
Maintainer: Stuart Lacy <stuart.lacy@york.ac.uk>
Diff between rprev versions 0.2.2 dated 2016-09-02 and 0.2.3 dated 2017-02-13
DESCRIPTION | 10 MD5 | 102 ++--- NAMESPACE | 3 NEWS.md | 19 + R/diagnostics.R | 7 R/incidence.R | 103 +++-- R/prevalence.R | 207 ++++++----- R/survfit.prev.R | 28 - R/survival.R | 12 R/utils.R | 38 +- build/vignette.rds |binary inst/doc/user_guide.R | 5 inst/doc/user_guide.Rmd | 7 inst/doc/user_guide.html | 145 +++---- man/UKmortality.Rd | 1 man/determine_registry_years.Rd | 3 man/determine_yearly_endpoints.Rd |only man/functional_form_age.Rd | 1 man/incidence.Rd | 6 man/incidence_age_distribution.Rd | 4 man/mean_incidence_rate.Rd | 10 man/plot.incidence.Rd | 7 man/plot.survfit.prev.Rd | 4 man/population_survival_rate.Rd | 3 man/prevalence.Rd | 21 - man/prevalence_counted.Rd | 1 man/prevalence_simulated.Rd | 1 man/prevsim.Rd | 1 man/raw_incidence.Rd | 16 man/rprev.Rd | 1 man/summary.survfit.prev.Rd | 1 man/survfit.prevalence.Rd | 1 man/test_incidence_fit.Rd | 9 man/test_prevalence_fit.Rd | 1 man/yearly_incidence.Rd |only tests/testthat/cache/diagnostics/prev_chisq.rds |binary tests/testthat/cache/survival/population_survival_rate_1.rds |binary tests/testthat/cache/survival/population_survival_rate_2.rds |binary tests/testthat/cache/survival/population_survival_rate_3.rds |binary tests/testthat/cache/survival/population_survival_rate_4.rds |binary tests/testthat/cache/survival/population_survival_rate_5.rds |binary tests/testthat/cache/survival/population_survival_rate_6.rds |binary tests/testthat/cache/survival/prob_alive_1.rds |binary tests/testthat/cache/survival/prob_alive_2.rds |binary tests/testthat/cache/survival/prob_alive_3.rds |binary tests/testthat/cache/survival/prob_alive_4.rds |binary tests/testthat/cache/survival/prob_alive_5.rds |binary tests/testthat/test_diagnostics.R | 10 tests/testthat/test_incidence.R | 18 tests/testthat/test_prevalence.R | 22 - tests/testthat/test_survival.R | 2 vignettes/bibliography.bib | 8 vignettes/user_guide.Rmd | 7 53 files changed, 464 insertions(+), 381 deletions(-)
Title: A Fast, Easy-to-Use Tool for Manipulating Tables in Databases
and a Wrapper of MADlib
Description: Provides an R interface for the Pivotal Data stack
running on 'PostgreSQL', 'Greenplum' or 'Apache HAWQ (incubating)'
databases with parallel and distributed computation ability for big data
processing. 'PivotalR' provides an R interface to various database
operations on tables or views. These operations are almost the same as
the corresponding native R operations. Thus users of R do not need
to learn 'SQL' when they operate on objects in the database. It also
provides a wrapper for 'Apache MADlib (incubating)', which is an open-
source library for parallel and scalable in-database analytics.
Author: Predictive Analytics Team at Pivotal Inc.
<user@madlb.incubator.apache.org>, with contributions from Data Science Team
at Pivotal Inc.
Maintainer: Rahul Iyer <riyer@pivotal.io>
Diff between PivotalR versions 0.1.18.2 dated 2016-10-22 and 0.1.18.3 dated 2017-02-13
DESCRIPTION | 8 MD5 | 41 ++-- R/defs-pkg.R | 6 R/madlib-kmeans.R | 8 R/madlib-lda.R | 188 ++++++++++++++----- R/madlib-lm.R | 3 R/madlib-randomForest.R | 13 - R/madlib-summary.R | 2 R/method-preview_.R | 6 R/onUnload.R | 17 - R/testing.R | 9 R/utility-madlib.R | 7 inst/doc/pivotalr.pdf |binary man/madlib.kmeans.Rd | 2 man/madlib.lda.Rd | 106 +++++++++- man/madlib.randomForest.Rd | 5 tests/README | 291 +++--------------------------- tests/testthat/test-examples.r | 2 tests/testthat/test-madlib_lda.r | 51 ++++- tests/testthat/test-madlib_lm.r |only tests/testthat/test-madlib_randomForest.r | 41 +++- tests/testthat/test-madlib_rpart.r |only tests/testthat/test-madlib_summary.r |only 23 files changed, 412 insertions(+), 394 deletions(-)
Title: Toolbox for Aquatic Ecosystem Modeling
Description: Classes and methods for implementing aquatic ecosystem models,
for running these models, and for visualizing their results.
Author: Peter Reichert
Maintainer: Peter Reichert <peter.reichert@eawag.ch>
Diff between ecosim versions 1.2 dated 2014-02-12 and 1.3 dated 2017-02-13
DESCRIPTION | 8 - MD5 | 13 +- NAMESPACE | 5 + R/ecosim.r | 224 +++++++++++++++++++++++++++++++++++++++++------- inst |only man/calcsens-methods.Rd |only man/calcsens.Rd |only man/ecosim-package.Rd | 4 man/plotres.Rd | 55 ++++++++++- 9 files changed, 261 insertions(+), 48 deletions(-)
Title: Discrete Time Survival Analysis
Description: Provides data transformations, estimation utilities,
predictive evaluation measures and simulation functions for discrete time
survival analysis.
Author: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de> and Matthias Schmid <matthias.schmid@imbie.uni-bonn.de>
Maintainer: Thomas Welchowski <welchow@imbie.meb.uni-bonn.de>
Diff between discSurv versions 1.1.3 dated 2016-05-10 and 1.1.5 dated 2017-02-13
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/DiscSurvEvaluation.R | 6 +++--- man/adjDevResidShort.Rd | 7 ++++--- man/concorIndex.Rd | 5 ++++- man/discSurv-package.Rd | 4 ++-- 6 files changed, 22 insertions(+), 18 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis
of spectral data obtained via nuclear magnetic resonance (NMR), infrared (IR) or
Raman spectroscopy. Includes functions for plotting and inspecting spectra, peak
alignment, hierarchical cluster analysis (HCA), principal components analysis
(PCA) and model-based clustering. Robust methods appropriate for this type of
high-dimensional data are available. ChemoSpec is designed with metabolomics
data sets in mind, where the samples fall into groups such as treatment and
control. Graphical output is formatted consistently for publication quality
plots. ChemoSpec is intended to be very user friendly and help you get usable
results quickly. A vignette covering typical operations is available.
Author: Bryan A. Hanson [aut, cre],
Mike Bostock [cph, ctb] (author of the d3.js library used in
plotSpectraJS, http://d3js.org)
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 4.4.1 dated 2016-12-29 and 4.4.17 dated 2017-02-13
DESCRIPTION | 10 +- MD5 | 154 ++++++++++++++++++++-------------------- NEWS | 13 +++ R/LoopThruSpectra.R | 8 +- R/binSpectra.R | 5 + R/check4Gaps.R | 4 - R/plotSpectraJS.R | 22 +++-- R/sumSpectra.R | 7 - inst/doc/ChemoSpec.pdf |binary inst/extdata/pS_brushNguides.js | 58 +++++++++------ inst/extdata/pS_controls.js | 71 ++++++++---------- inst/extdata/pS_globals.js | 10 +- inst/extdata/pS_spectra.js | 49 +++++------- inst/extdata/plotSpectraJS.html | 2 man/ChemoSpec-package.Rd | 9 +- man/Spectra.Rd | 8 +- man/SrE.IR.Rd | 1 man/aovPCAloadings.Rd | 7 - man/aovPCAscores.Rd | 7 - man/aov_pcaSpectra.Rd | 7 - man/avgFacLvls.Rd | 7 - man/baselineSpectra.Rd | 7 - man/binData.Rd | 7 - man/binSpectra.Rd | 7 - man/c_pcaSpectra.Rd | 7 - man/check4Gaps.Rd | 7 - man/chkSpectra.Rd | 7 - man/clupaSpectra.Rd | 7 - man/colLeaf.Rd | 7 - man/colorSymbol.Rd | 7 - man/conColScheme.Rd | 7 - man/coordProjCS.Rd | 7 - man/cv_pcaSpectra.Rd | 7 - man/evalClusters.Rd | 7 - man/files2SpectraObject.Rd | 9 +- man/groupNcolor.Rd | 7 - man/hcaScores.Rd | 7 - man/hcaSpectra.Rd | 7 - man/hmapSpectra.Rd | 7 - man/hypTestScores.Rd | 7 - man/isWholeNo.Rd | 7 - man/labelExtremes.Rd | 7 - man/labelExtremes3d.Rd | 7 - man/loopThruSpectra.Rd | 7 - man/makeEllipsoid.Rd | 7 - man/mclust3D.Rd | 7 - man/mclust3dSpectra.Rd | 7 - man/mclustSpectra.Rd | 7 - man/metMUD1.Rd | 9 +- man/normSpectra.Rd | 7 - man/normVec.Rd | 7 - man/pcaDiag.Rd | 7 - man/plot2Loadings.Rd | 7 - man/plotHCA.Rd | 7 - man/plotLoadings.Rd | 7 - man/plotScores.Rd | 7 - man/plotScores3D.Rd | 7 - man/plotScoresCor.Rd | 7 - man/plotScoresDecoration.Rd | 7 - man/plotScoresRGL.Rd | 7 - man/plotScree.Rd | 9 +- man/plotSpectra.Rd | 7 - man/plotSpectraDist.Rd | 7 - man/plotSpectraJS.Rd | 12 +-- man/q2rPCA.Rd | 7 - man/r_pcaSpectra.Rd | 7 - man/removeFreq.Rd | 7 - man/removeGroup.Rd | 8 +- man/rowDist.Rd | 1 man/sPlotSpectra.Rd | 7 - man/sampleDistSpectra.Rd | 7 - man/seXy.Rd | 12 ++- man/sgfSpectra.Rd | 7 - man/shrinkLeaf.Rd | 7 - man/splitSpectraGroups.Rd | 7 - man/sumGroups.Rd | 7 - man/sumSpectra.Rd | 7 - man/surveySpectra.Rd | 12 +-- 78 files changed, 418 insertions(+), 456 deletions(-)
Title: Convert Statistical Analysis Objects into Tidy Data Frames
Description: Convert statistical analysis objects from R into tidy data frames,
so that they can more easily be combined, reshaped and otherwise processed
with tools like 'dplyr', 'tidyr' and 'ggplot2'. The package provides three
S3 generics: tidy, which summarizes a model's statistical findings such as
coefficients of a regression; augment, which adds columns to the original
data such as predictions, residuals and cluster assignments; and glance, which
provides a one-row summary of model-level statistics.
Author: David Robinson [aut, cre],
Matthieu Gomez [ctb],
Boris Demeshev [ctb],
Dieter Menne [ctb],
Benjamin Nutter [ctb],
Luke Johnston [ctb],
Ben Bolker [ctb],
Francois Briatte [ctb],
Jeffrey Arnold [ctb],
Jonah Gabry [ctb],
Luciano Selzer [ctb],
Gavin Simpson [ctb],
Jens Preussner [ctb],
Jay Hesselberth [ctb],
Hadley Wickham [ctb]
Maintainer: David Robinson <admiral.david@gmail.com>
Diff between broom versions 0.4.1 dated 2016-06-24 and 0.4.2 dated 2017-02-13
DESCRIPTION | 17 ++--- MD5 | 52 +++++++++------- NAMESPACE | 14 ++++ R/anova_tidiers.R | 2 R/betareg_tidiers.R |only R/brms_tidiers.R |only R/glmnet_tidiers.R | 16 ++--- R/list_tidiers.R | 4 - R/lm_tidiers.R | 16 +++-- R/lsmeans_tidiers.R |only R/orcutt_tidiers.R | 43 +++++++++---- R/robust_tidiers.R |only R/rstanarm_tidiers.R | 127 +++++++++++++++++++++++++++++------------ R/survival_tidiers.R | 46 ++++++++------ README.md | 25 +++++--- inst/doc/bootstrapping.html | 17 ++--- inst/doc/broom.Rmd | 2 inst/doc/broom.html | 2 inst/doc/broom_and_dplyr.html | 87 +++++++++++++--------------- inst/doc/kmeans.html | 8 +- man/betareg_tidiers.Rd |only man/brms_tidiers.Rd |only man/glmnet_tidiers.Rd | 4 - man/lsmeans_tidiers.Rd |only man/orcutt_tidiers.Rd | 34 +++++----- man/robust_tidiers.Rd |only man/rstanarm_tidiers.Rd | 71 +++++++++++++++------- man/survfit_tidiers.Rd | 4 - tests/testthat/test-rstanarm.R | 9 ++ tests/testthat/test-tidy.R | 18 +++-- vignettes/broom.Rmd | 2 31 files changed, 389 insertions(+), 231 deletions(-)
Title: 'AWS' Java 'SDK' for R
Description: Installs the compiled Java modules of the Amazon Web Services ('AWS') 'SDK' to be used in downstream R packages interacting with 'AWS'. See <https://aws.amazon.com/sdk-for-java> for more information on the 'AWS' 'SDK' for Java.
Author: Gergely Daroczi <gergely.daroczi@card.com>
Maintainer: Gergely Daroczi <gergely.daroczi@card.com>
Diff between AWR versions 1.11.88 dated 2017-02-11 and 1.11.89 dated 2017-02-13
DESCRIPTION | 10 ++----- MD5 | 11 ++++--- NAMESPACE | 3 +- R/zzz.R | 73 +++++++++++++++++++++++++++++++++++++++-------------- README.md | 32 ++++++++++++++++++----- java |only man/AWR-package.Rd | 9 ++---- 7 files changed, 96 insertions(+), 42 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp and Paule-Mandel method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression (if R package 'metafor' is installed);
- generalised linear mixed models (if R packages 'metafor', 'lme4', 'numDeriv', and 'BiasedUrn' are installed).
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 4.7-0 dated 2016-12-16 and 4.7-1 dated 2017-02-13
DESCRIPTION | 8 - MD5 | 44 +++++----- NEWS | 67 ++++++++++++++++ R/catmeth.R | 33 +++++++ R/ci.R | 10 +- R/forest.meta.R | 138 ++++++++++++++++++++------------ R/meta-internal.R | 10 ++ R/metacor.R | 9 ++ R/metagen.R | 23 ++++- R/metaprop.R | 19 ++++ R/metarate.R | 28 +++--- R/print.meta.R | 9 +- R/print.summary.meta.R | 205 +++++++++++++++++++++++++++++-------------------- R/settings.meta.R | 62 +++++++++++++- R/summary.meta.R | 12 ++ R/update.meta.R | 8 + man/ci.Rd | 4 man/metacor.Rd | 9 +- man/metagen.Rd | 4 man/metaprop.Rd | 7 + man/metarate.Rd | 7 + man/print.meta.Rd | 19 ++++ man/update.meta.Rd | 3 23 files changed, 535 insertions(+), 203 deletions(-)
Title: Linear Predictive Models Based on the 'LIBLINEAR' C/C++ Library
Description: A wrapper around the 'LIBLINEAR' C/C++ library for machine
learning (available at
<http://www.csie.ntu.edu.tw/~cjlin/liblinear>). 'LIBLINEAR' is
a simple library for solving large-scale regularized linear
classification and regression. It currently supports
L2-regularized classification (such as logistic regression,
L2-loss linear SVM and L1-loss linear SVM) as well as
L1-regularized classification (such as L2-loss linear SVM and
logistic regression) and L2-regularized support vector
regression (with L1- or L2-loss). The main features of
LiblineaR include multi-class classification (one-vs-the rest,
and Crammer & Singer method), cross validation for model
selection, probability estimates (logistic regression only) or
weights for unbalanced data. The estimation of the models is
particularly fast as compared to other libraries.
Author: Thibault Helleputte <thibault.helleputte@dnalytics.com>; Pierre
Gramme <pierre.gramme@dnalytics.com>; Jerome Paul
<jerome.paul@dnalytics.com>
Maintainer: Thibault Helleputte <thibault.helleputte@dnalytics.com>
Diff between LiblineaR versions 1.94-2 dated 2015-02-04 and 2.10-8 dated 2017-02-13
LiblineaR-1.94-2/LiblineaR/src/Makevars |only LiblineaR-2.10-8/LiblineaR/DESCRIPTION | 42 - LiblineaR-2.10-8/LiblineaR/MD5 | 32 - LiblineaR-2.10-8/LiblineaR/NAMESPACE | 10 LiblineaR-2.10-8/LiblineaR/NEWS | 15 LiblineaR-2.10-8/LiblineaR/R/LiblineaR.R | 51 + LiblineaR-2.10-8/LiblineaR/R/heuristicC.R | 1 LiblineaR-2.10-8/LiblineaR/R/predict.R | 245 ++++---- LiblineaR-2.10-8/LiblineaR/man/LiblineaR.Rd | 165 +++-- LiblineaR-2.10-8/LiblineaR/man/heuristicC.Rd | 7 LiblineaR-2.10-8/LiblineaR/man/predict.LiblineaR.Rd | 11 LiblineaR-2.10-8/LiblineaR/src/Makevars.win |only LiblineaR-2.10-8/LiblineaR/src/linear.cpp | 567 +++++++++++++------- LiblineaR-2.10-8/LiblineaR/src/linear.h | 9 LiblineaR-2.10-8/LiblineaR/src/predictLinear.c | 18 LiblineaR-2.10-8/LiblineaR/src/trainLinear.c | 72 ++ LiblineaR-2.10-8/LiblineaR/src/tron.cpp | 30 - LiblineaR-2.10-8/LiblineaR/src/tron.h | 3 18 files changed, 799 insertions(+), 479 deletions(-)
Title: Coverage Probability Excursion (CoPE) Sets
Description: Provides functions to compute and plot Coverage
Probability Excursion (CoPE) sets
for real valued functions on a 2-dimensional domain. CoPE sets are obtained
from repeated noisy observations of the function on the entire domain.
They are designed to bound the excursion
set of the target function at a given level from above and below with
a predefined probability. The target
function can be a parameter in spatially-indexed linear regression.
Support by NIH grant R01 CA157528 is gratefully acknowledged.
Author: Max Sommerfeld [aut, cre],
Joshua French [aut],
Armin Schwartzman [aut]
Maintainer: Max Sommerfeld <max.sommerfeld@mathematik.uni-goettingen.de>
Diff between cope versions 0.1 dated 2015-01-27 and 0.2.3 dated 2017-02-13
cope-0.1/cope/R/SubsetContour.R |only cope-0.1/cope/man/SubsetContour.Rd |only cope-0.2.3/cope/DESCRIPTION | 27 +- cope-0.2.3/cope/MD5 | 46 ++-- cope-0.2.3/cope/NAMESPACE | 20 +- cope-0.2.3/cope/R/ComputeCope.R | 294 +++++++++++++++++++++++++---- cope-0.2.3/cope/R/DrawContour.R | 2 cope-0.2.3/cope/R/MBContour.R | 20 -- cope-0.2.3/cope/R/TaylorContour.R | 15 + cope-0.2.3/cope/R/ToyExamples.R | 299 ++++++++++++++++++++++-------- cope-0.2.3/cope/R/preamble.R |only cope-0.2.3/cope/man/ARCoeffMap.Rd |only cope-0.2.3/cope/man/ComputeCope.Rd | 56 ++++- cope-0.2.3/cope/man/DrawContour.Rd | 3 cope-0.2.3/cope/man/ImageMap.Rd | 7 cope-0.2.3/cope/man/MBContour.Rd | 18 - cope-0.2.3/cope/man/PlotCope.Rd | 11 - cope-0.2.3/cope/man/TaylorContour.Rd | 16 - cope-0.2.3/cope/man/ToyNoise1.Rd | 21 +- cope-0.2.3/cope/man/ToyNoise1Presmooth.Rd | 21 +- cope-0.2.3/cope/man/ToyNoise2.Rd | 21 +- cope-0.2.3/cope/man/ToyNoise3.Rd | 21 +- cope-0.2.3/cope/man/ToyNoiseMap.Rd |only cope-0.2.3/cope/man/ToySignal.Rd | 9 cope-0.2.3/cope/man/ToySignalDC.Rd |only cope-0.2.3/cope/man/ToySlope.Rd |only cope-0.2.3/cope/man/cope.Rd | 16 - cope-0.2.3/cope/man/plot.cope.Rd |only 28 files changed, 712 insertions(+), 231 deletions(-)
Title: Histogram-Valued Data Analysis
Description: In the framework of Symbolic Data Analysis, a relatively new
approach to the statistical analysis of multi-valued data, we consider
histogram-valued data, i.e., data described by univariate histograms. The
methods and the basic statistics for histogram-valued data are mainly based
on the L2 Wasserstein metric between distributions, i.e., a Euclidean metric
between quantile functions. The package contains unsupervised classification
techniques, least square regression and tools for histogram-valued data and for
histogram time series.
Author: Antonio Irpino [aut, cre]
Maintainer: Antonio Irpino <antonio.irpino@unina2.it>
Diff between HistDAWass versions 0.1.4 dated 2016-01-12 and 0.1.6 dated 2017-02-13
DESCRIPTION | 20 MD5 | 194 ++--- NAMESPACE | 3 R/All_classes.R | 7 R/Fuzzy_cmeans.R | 1043 +++++++++++++++++++++------- R/H_time_series.R | 20 R/Kohonen_maps.R | 532 ++++++-------- R/Met_MatH.R | 59 + R/Plotting_with_ggplot.R | 8 R/Utility.R | 320 ++++++++ R/principal_components.R | 19 R/unsuperv_classification.R | 7 README.md | 54 + man/Age_Pyramids_2014.Rd | 1 man/Agronomique.Rd | 1 man/BLOOD.Rd | 1 man/BloodBRITO.Rd | 1 man/Center.cell.MatH-methods.Rd | 1 man/China_Month.Rd | 1 man/China_Seas.Rd | 1 man/DouglasPeucker.Rd | 1 man/HTS-class.Rd | 3 man/HTS.exponential.smoothing.Rd | 2 man/HTS.moving.averages.Rd | 2 man/HTS.predict.knn.Rd | 1 man/HistDAWass-package.Rd | 9 man/MatH-class.Rd | 10 man/OzoneFull.Rd | 1 man/OzoneH.Rd | 1 man/RetHTS.Rd | 1 man/ShortestDistance.Rd | 1 man/TMatH-class.Rd | 3 man/TdistributionH-class.Rd | 3 man/WH.1d.PCA.Rd | 1 man/WH.MultiplePCA.Rd | 3 man/WH.SSQ-methods.Rd | 1 man/WH.SSQ2-methods.Rd | 1 man/WH.bind-methods.Rd | 1 man/WH.bind.col-methods.Rd | 1 man/WH.bind.row-methods.Rd | 1 man/WH.correlation-methods.Rd | 1 man/WH.correlation2-methods.Rd | 1 man/WH.mat.prod-methods.Rd | 1 man/WH.mat.sum-methods.Rd | 1 man/WH.regression.GOF.Rd | 1 man/WH.regression.two.components.Rd | 1 man/WH.regression.two.components.predict.Rd | 1 man/WH.var.covar-methods.Rd | 1 man/WH.var.covar2-methods.Rd | 1 man/WH.vec.mean-methods.Rd | 1 man/WH.vec.sum-methods.Rd | 1 man/WH_2d_Adaptive_Kohonen_maps.Rd | 15 man/WH_2d_Kohonen_maps.Rd | 10 man/WH_adaptive.kmeans.Rd | 2 man/WH_adaptive_fcmeans.Rd | 3 man/WH_fcmeans.Rd | 2 man/WH_hclust.Rd | 1 man/WH_kmeans.Rd | 2 man/WassSqDistH-methods.Rd | 1 man/checkEmptyBins-methods.Rd | 1 man/compP-methods.Rd | 1 man/compQ-methods.Rd | 1 man/crwtransform-methods.Rd | 7 man/data2hist.Rd | 1 man/distributionH-class.Rd | 11 man/dotpW-methods.Rd | 11 man/extract-methods.Rd | 1 man/get.MatH.ncols-methods.Rd | 1 man/get.MatH.nrows-methods.Rd | 1 man/get.MatH.rownames-methods.Rd | 1 man/get.MatH.stats-methods.Rd | 2 man/get.MatH.varnames-methods.Rd | 1 man/get.cell.MatH-methods.Rd |only man/get.distr-methods.Rd | 1 man/get.histo-methods.Rd | 1 man/get.m-methods.Rd | 1 man/get.s-methods.Rd | 1 man/is.registeredMH-methods.Rd | 7 man/kurtH-methods.Rd | 1 man/meanH-methods.Rd | 1 man/minus.Rd | 5 man/plot-HTS.Rd | 3 man/plot-MatH.Rd | 3 man/plot-TdistributionH.Rd | 3 man/plot-distributionH.Rd | 3 man/plotPredVsObs.Rd | 1 man/plot_errors.Rd | 1 man/plus-methods.Rd | 5 man/rQQ-methods.Rd | 7 man/register-methods.Rd | 7 man/registerMH-methods.Rd | 7 man/set.cell.MatH-methods.Rd |only man/show-MatH-methods.Rd | 3 man/show-distributionH-methods.Rd | 1 man/skewH-methods.Rd | 1 man/stations_coordinates.Rd | 1 man/stdH-methods.Rd | 1 man/subsetHTS-methods.Rd | 1 man/times-methods.Rd | 5 99 files changed, 1667 insertions(+), 831 deletions(-)