Wed, 15 Feb 2017

New package yesno with initial version 0.0.2
Package: yesno
Title: Ask a Custom Yes-No Question
Version: 0.0.2
Date: 2017-02-15
Authors@R: c( person("Hadley", "Wickham", email = "hadley@rstudio.com", role = "aut"), person("Joe", "Thorley", email = "joe@poissonconsulting.ca", role = c("com", "cre")))
Description: Asks a custom Yes-No question with variable responses. The order and phrasing of the possible responses varies randomly to ensure the user consciously chooses (as opposed to automatically types their response).
License: GPL (>= 2)
Depends: R (>= 3.3.0)
Imports: utils
Suggests: testthat, covr
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-02-15 18:29:07 UTC; joe
Author: Hadley Wickham [aut], Joe Thorley [com, cre]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Repository: CRAN
Date/Publication: 2017-02-15 20:55:08

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New package velociraptr with initial version 1.0
Package: velociraptr
Type: Package
Title: Fossil Analysis
Version: 1.0
Author: Andrew A. Zaffos
Maintainer: Andrew A Zaffos <azaffos@wisc.edu>
Description: Functions for downloading, reshaping, culling, cleaning, and analyzing fossil data from the Paleobiology Database <https://paleobiodb.org>.
License: GPL-3
Encoding: UTF-8
Depends: rgdal,RCurl
LazyData: true
RoxygenNote: 5.0.1
Packaged: 2017-02-15 18:20:07 UTC; zaffos
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2017-02-15 20:25:34

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Package highfrequency updated to version 0.5 with previous version 0.4 dated 2014-11-28

Title: Tools for Highfrequency Data Analysis
Description: Provide functionality to manage, clean and match highfrequency trades and quotes data, calculate various liquidity measures, estimate and forecast volatility, and investigate microstructure noise and intraday periodicity.
Author: Kris Boudt [aut, cre], Jonathan Cornelissen [aut], Scott Payseur [aut], Giang Nguyen [ctb], Maarten Schermer [ctb]
Maintainer: Kris Boudt <Kris.Boudt@econ.kuleuven.be>

Diff between highfrequency versions 0.4 dated 2014-11-28 and 0.5 dated 2017-02-15

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 94 files changed, 10697 insertions(+), 10655 deletions(-)

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Package inlmisc updated to version 0.2.4 with previous version 0.2.3 dated 2017-02-07

Title: Miscellaneous Functions for the USGS INL Project Office
Description: A collection of functions for creating high-level graphics, performing raster-based analysis, processing MODFLOW-based models, and overlaying multi-polygon objects. Used to support packages and scripts written by researchers at the United States Geological Survey (USGS) Idaho National Laboratory (INL) Project Office.
Author: Jason C. Fisher [aut, cre]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>

Diff between inlmisc versions 0.2.3 dated 2017-02-07 and 0.2.4 dated 2017-02-15

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 MD5                  |   10 +++++-----
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More information about inlmisc at CRAN
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Package ggalt updated to version 0.4.0 with previous version 0.1.1 dated 2016-01-04

Title: Extra Coordinate Systems, 'Geoms', Statistical Transformations, Scales and Fonts for 'ggplot2'
Description: A compendium of new geometries, coordinate systems, statistical transformations, scales and fonts for 'ggplot2', including splines, 1d and 2d densities, univariate average shifted histograms, a new map coordinate system based on the 'PROJ.4'-library along with geom_cartogram() that mimics the original functionality of geom_map(), formatters for "bytes", a stat_stepribbon() function, increased 'plotly' compatibility and the 'StateFace' open source font 'ProPublica'. Further new functionality includes lollipop charts, dumbbell charts, the ability to encircle points and coordinate-system-based text annotations.
Author: Bob Rudis [aut, cre], Ben Bolker [aut, ctb] (Encircling & additional splines), Ben Marwick [ctb] (General codebase cleanup), Jan Schulz [aut, ctb] (Annotations), Rosen Matev [ctb] (Original annotate_textp implementation on stackoverflow), ProPublica [dtc] (StateFace font)
Maintainer: Bob Rudis <bob@rud.is>

Diff between ggalt versions 0.1.1 dated 2016-01-04 and 0.4.0 dated 2017-02-15

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New package pacotest with initial version 0.2
Package: pacotest
Type: Package
Title: Testing for Partial Copulas and the Simplifying Assumption in Vine Copulas
Version: 0.2
Date: 2017-02-13
Authors@R: person("Malte S.", "Kurz", email = "malte.kurz@stat.uni-muenchen.de", role = c("aut", "cre"))
Maintainer: Malte S. Kurz <malte.kurz@stat.uni-muenchen.de>
Description: Routines for two different test types, the Equal Correlation (ECORR) test and the Vectorial Independence (VI) test are provided. The tests can be applied to check whether a conditional copula coincides with its partial copula. Functions to test whether a regular vine copula satisfies the so-called simplifying assumption or to test a single copula within a regular vine copula to be a (j-1)-th order partial copula are available. The ECORR test comes with a decision tree approach to allow testing in high-dimensional settings.
License: MIT + file LICENSE
Imports: Rcpp (>= 0.11.4), VineCopula (>= 2.0.5), numDeriv, ggplot2(>= 2.0.0), gridExtra, methods
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, covr
BugReports: http://github.com/MalteKurz/pacotest/issues
NeedsCompilation: yes
Packaged: 2017-02-15 15:15:43 UTC; malte
Author: Malte S. Kurz [aut, cre]
Repository: CRAN
Date/Publication: 2017-02-15 16:47:14

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New package Jdmbs with initial version 1.0
Package: Jdmbs
Type: Package
Title: Monte Carlo Option Pricing Algorithm for Jump Diffusion Model with Correlation Companies
Version: 1.0
Date: 2017-02-15
Authors@R: c( person("Masashi", "Okada", role = c("aut", "cre"), email="okadaalgorithm@gmail.com") )
Description: Black-Scholes Model [Black (1973) <doi:10.1086/260062>] is important to calculate option premium in the stock market. And variety of improved models are studied. In this package, I proposed functions in order to calculate normal and new Jump Diffusion Models [Kou (2002) <doi:10.1287/mnsc.48.8.1086.166>] by Monte Carlo Method. This package can be used for Computational Finance.
Depends: R (>= 3.2.3)
License: GPL (>= 2)
Imports: igraph, rmarkdown, graphics, stats, utils
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
Maintainer: Masashi Okada <okadaalgorithm@gmail.com>
Suggests: knitr, testthat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-02-15 14:33:21 UTC; okada
Author: Masashi Okada [aut, cre]
Repository: CRAN
Date/Publication: 2017-02-15 16:47:11

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Package incidence updated to version 1.1.1 with previous version 1.1.0 dated 2016-12-13

Title: Compute, Handle, Plot and Model Incidence of Dated Events
Description: Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<http://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Thibaut Jombart [aut, cre], Rich FitzJohn [aut], Jun Cai [ctb]
Maintainer: Thibaut Jombart <thibautjombart@gmail.com>

Diff between incidence versions 1.1.0 dated 2016-12-13 and 1.1.1 dated 2017-02-15

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 vignettes/incidence_class.Rmd      |   31 +++++++++++-
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 49 files changed, 359 insertions(+), 210 deletions(-)

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New package warpMix with initial version 0.1.0
Package: warpMix
Title: Mixed Effects Modeling with Warping for Functional Data Using B-Spline
Version: 0.1.0
Author: Emilie Devijver, Gerda Claeskens, Irene Gijbels
Maintainer: Emilie Devijver <emilie.devijver@kuleuven.be>
Description: Mixed effects modeling with warping for functional data using B- spline. Warping coefficients are considered as random effects, and warping functions are general functions, parameters representing the projection onto B- spline basis of a part of the warping functions. Warped data are modelled by a linear mixed effect functional model, the noise is Gaussian and independent from the warping functions.
License: GPL (>= 3)
LazyData: TRUE
Imports: fda (>= 2.4.4), fields (>= 8.4-1), MASS (>= 7.3-44), reshape2 (>= 1.4.2), nlme (>= 3.1-128), lme4 (>= 1.1-12)
Depends: R (>= 3.3.2)
RoxygenNote: 5.0.1
NeedsCompilation: no
Packaged: 2017-02-15 13:43:41 UTC; u0106095
Repository: CRAN
Date/Publication: 2017-02-15 15:11:39

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Package pathological updated to version 0.1-2 with previous version 0.1-1 dated 2016-09-05

Title: Path Manipulation Utilities
Description: Utilities for paths, files and directories.
Author: Richard Cotton [aut, cre], Janko Thyson [ctb]
Maintainer: Richard Cotton <richierocks@gmail.com>

Diff between pathological versions 0.1-1 dated 2016-09-05 and 0.1-2 dated 2017-02-15

 DESCRIPTION                             |   10 
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Package Ckmeans.1d.dp updated to version 4.0.0 with previous version 3.4.6-6 dated 2017-01-03

Title: Optimal and Fast Univariate Clustering
Description: A fast dynamic programming algorithm for optimal univariate clustering. Minimizing the sum of squares of within-cluster distances, the algorithm guarantees optimality and reproducibility. Its advantage over heuristic clustering algorithms in efficiency and accuracy is increasingly pronounced as the number of clusters k increases. With optional weights, the algorithm can also optimally segment time series and perform peak calling. An auxiliary function generates histograms that are adaptive to patterns in data. This package provides a powerful alternative to heuristic methods for univariate data analysis.
Author: Joe Song [aut, cre], Haizhou Wang [aut]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>

Diff between Ckmeans.1d.dp versions 3.4.6-6 dated 2017-01-03 and 4.0.0 dated 2017-02-15

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Package ameco updated to version 0.2.6 with previous version 0.2.5 dated 2017-01-30

Title: European Commission Annual Macro-Economic (AMECO) Database
Description: Annual macro-economic database provided by the European Commission.
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>

Diff between ameco versions 0.2.5 dated 2017-01-30 and 0.2.6 dated 2017-02-15

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Package MCAPS (with last version 0.3-2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-21 0.3-2
2010-04-12 0.3-1
2008-08-12 0.3

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Package nomadlist (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-06-30 0.1.0

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Package stashR (with last version 0.3-5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2012-03-21 0.3-5
2011-07-23 0.3-4
2009-03-27 0.3-3
2008-05-02 0.3-2
2007-05-15 0.3-1

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Package biom (with last version 0.3.12) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2014-02-23 0.3.12
2013-12-13 0.3.11
2013-09-18 0.3.10
2013-05-22 0.3.9
2013-04-29 0.3.8

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Package ReIns updated to version 1.0.2 with previous version 1.0.1 dated 2016-12-27

Title: Functions from "Reinsurance: Actuarial and Statistical Aspects"
Description: Functions from the book "Reinsurance: Actuarial and Statistical Aspects" (Wiley, 2017) by Hansjoerg Albrecher, Jan Beirlant and Jef Teugels.
Author: Tom Reynkens [aut, cre], Roel Verbelen [aut] (R code for Mixed Erlang distribution), Anastasios Bardoutsos [ctb] (Original R code for cEPD estimator), Dries Cornilly [ctb] (Original R code for EVT estimators for truncated data), Yuri Goegebeur [ctb] (Original S-Plus code for basic EVT estimators), Klaus Herrmann [ctb] (Original R code for GPD estimator)
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>

Diff between ReIns versions 1.0.1 dated 2016-12-27 and 1.0.2 dated 2017-02-15

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New package ipft with initial version 0.1.03
Package: ipft
Type: Package
Title: Indoor Positioning Fingerprinting Toolset
Depends: R (>= 2.10)
Version: 0.1.03
Author: Emilio Sansano
Maintainer: Emilio Sansano <esansano@uji.es>
Description: Algorithms and utility functions for indoor positioning using fingerprinting techniques. These functions are designed for manipulation of RSSI data sets, estimation of positions, comparison of the performance of different models, and graphical visualization of data. Machine learning algorithms and methods such as k-nearest neighbors or probabilistic fingerprinting are implemented in this package to perform analysis and estimations over RSSI data sets.
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 5.0.1
LinkingTo: Rcpp
Imports: Rcpp, methods, stats, apcluster, cluster, dplyr, ggplot2
NeedsCompilation: yes
Packaged: 2017-02-14 16:59:30 UTC; emilio
Repository: CRAN
Date/Publication: 2017-02-15 14:28:35

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New package incadata with initial version 0.5.3
Package: incadata
Type: Package
Title: Recognize and Handle Data in Formats Used by Swedish Cancer Centers
Version: 0.5.3
Author: Erik Bulow
Maintainer: Erik Bulow <erik.bulow@rccvast.se>
Description: Handle data in formats used by cancer centers in Sweden, both from INCA (the current register platform, (see <http://www.incanet.se> for more information) and by the older register platform Rockan (used in the Western and Northern part of the country). All variables are coerced to suitable classes based on their format. Dates (from various formats such as with missing month or day, with or without century prefix or with just a week number) are all recognised as dates and coerced to the ISO 8601 standard (Y-m-d). Boolean variables (internally stored either as 0/1 or "True"/"False"/blanks when exported) are coerced to logical. Variable names ending in '_Beskrivning' and '_Varde' will be character, and 'PERSNR' will be coerced (if possible) to a valid personal identification number 'pin' (by the 'sweidnumbr' package). The package also allow the user to interactively choose if a variable should be coerced into a potential format even though not all of its values might conform to the recognised pattern. It also contain a caching mechanism in order to temporarily store data sets with its newly decided formats in order to not rerun the identification process each time.
License: GPL-2
Depends: R (>= 2.10)
Imports: backports, decoder, dplyr, rccmisc, sweidnumbr
Suggests: testthat, knitr, rmarkdown
RoxygenNote: 6.0.1
VignetteBuilder: knitr
URL: https://www.bitbucket.org/cancercentrum/incadata
BugReports: https://www.bitbucket.org/cancercentrum/incadata/issues
LazyData: true
NeedsCompilation: no
Packaged: 2017-02-15 09:19:49 UTC; erikbulow
Repository: CRAN
Date/Publication: 2017-02-15 14:28:33

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Package GameTheory updated to version 2.5 with previous version 2.4 dated 2016-09-27

Title: Cooperative Game Theory
Description: Implementation of a common set of punctual solutions for Cooperative Game Theory.
Author: Sebastian Cano-Berlanga
Maintainer: Sebastian Cano-Berlanga <cano.berlanga@gmail.com>

Diff between GameTheory versions 2.4 dated 2016-09-27 and 2.5 dated 2017-02-15

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Package emojifont updated to version 0.4.0 with previous version 0.3.7 dated 2016-12-28

Title: Emoji and Font Awesome in Graphics
Description: An implementation of using emoji and fontawesome for using in both base and 'ggplot2' graphics.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>

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New package condir with initial version 0.1.1
Package: condir
Title: Computation of P Values and Bayes Factors for Conditioning Data
Version: 0.1.1
Author: Angelos-Miltiadis Krypotos <amkrypotos@gmail.com>
Maintainer: Angelos-Miltiadis Krypotos <amkrypotos@gmail.com>
Date: 2017-02-14
Description: Set of functions for the easy analyses of conditioning data.
Depends: R (>= 3.3.2),
License: GPL-3
LazyData: true
RoxygenNote: 5.0.1
Imports: BayesFactor (>= 0.9.12.2), stats (>= 3.3.2), knitr(>= 1.15.1), xtable(>= 1.8.2), psych (>= 1.6.12), graphics (>= 3.3.2), effsize (>= 0.7.0), shiny (>= 1.0.0)
URL: https://github.com/AngelosPsy/condir
BugReports: https://github.com/AngelosPsy/condir/issues
Suggests: rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-02-15 10:44:24 UTC; angelos-miltiadiskrypotos
Repository: CRAN
Date/Publication: 2017-02-15 14:28:30

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Package jpndistrict (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2016-12-02 0.1.0

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Package ETAS updated to version 0.4.1 with previous version 0.4 dated 2017-01-04

Title: Modeling Earthquake Data Using ETAS Model
Description: Fits the space-time Epidemic Type Aftershock Sequence (ETAS) model to earthquake catalogs using a stochastic declustering approach. The ETAS model is a spatio-temporal marked point process model and a special case of the Hawkes process. The package is based on a Fortran program by Jiancang Zhuang (available at <http://bemlar.ism.ac.jp/zhuang/software.html>), which is modified and translated into C++ and C such that it can be called from R.
Author: Abdollah Jalilian [aut, cre], Jiancang Zhuang [ctb]
Maintainer: Abdollah Jalilian <jalilian@razi.ac.ir>

Diff between ETAS versions 0.4 dated 2017-01-04 and 0.4.1 dated 2017-02-15

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Package xaringan updated to version 0.2 with previous version 0.1 dated 2016-12-13

Title: Presentation Ninja
Description: Create HTML5 slides with R Markdown and the JavaScript library 'remark.js' (<https://remarkjs.com>).
Author: Yihui Xie [aut, cre], Ole Petter Bang [ctb] (CSS in rmarkdown/templates/xaringan/resources/example.css)
Maintainer: Yihui Xie <xie@yihui.name>

Diff between xaringan versions 0.1 dated 2016-12-13 and 0.2 dated 2017-02-15

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Package rscopus updated to version 0.4.6 with previous version 0.3.1 dated 2016-11-15

Title: Scopus Database 'API' Interface
Description: Uses Elsevier 'Scopus' 'API' <https://dev.elsevier.com/sc_apis.html> to download information about authors and their citations.
Author: John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>

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New package PredPsych with initial version 0.1
Package: PredPsych
Type: Package
Title: Predictive Approaches in Psychology
Version: 0.1
Date: 2017-02-13
Author: Atesh Koul
Maintainer: Atesh Koul <atesh.koul@gmail.com>
Description: Recent years have seen an increased interest in novel methods for analyzing quantitative data from experimental psychology. Currently, however, they lack an established and accessible software framework. Many existing implementations provide no guidelines, consisting of small code snippets, or sets of packages. In addition, the use of existing packages often requires advanced programming experience. 'PredPsych' is a user-friendly toolbox based on machine learning predictive algorithms. It comprises of multiple functionalities for multivariate analyses of quantitative behavioral data based on machine learning models.
License: GPL-3
LazyData: TRUE
Depends: R (>= 3.1.0)
Imports: plyr, ggplot2, caret, rpart, e1071, mclust, MASS, party, randomForest
RoxygenNote: 5.0.1
Suggests: knitr, rmarkdown
Repository: CRAN
NeedsCompilation: no
Packaged: 2017-02-14 19:30:34 UTC; koul
Date/Publication: 2017-02-15 09:59:53

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Package littler updated to version 0.3.2 with previous version 0.3.1 dated 2016-08-07

Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end is provided by 'r' (aka 'littler') as a lightweight binary wrapper around the GNU R language and environment for statistical computing and graphics. While R can be used in batch mode, the r binary adds full support for both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path expression as the first line in scripts) as well as command-line use in standard Unix pipelines. In other words, r provides the R language without the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.