Title: Everyone's Statistical Software
Description: A framework that brings together an abundance of common
statistical models found across packages into a unified interface, and
provides a common architecture for estimation and interpretation, as well
as bridging functions to absorb increasingly more models into the
collective library. Zelig allows each individual package, for each
statistical model, to be accessed by a common uniformly structured call and
set of arguments. Moreover, Zelig automates all the surrounding building
blocks of a statistical work-flow--procedures and algorithms that may be
essential to one user's application but which the original package
developer did not use in their own research and might not themselves
support. These include bootstrapping, jackknifing, and re-weighting of data.
In particular, Zelig automatically generates predicted and simulated
quantities of interest (such as relative risk ratios, average treatment
effects, first differences and predicted and expected values) to interpret
and visualize complex models.
Author: Christine Choirat [aut],
Christopher Gandrud [aut, cre],
James Honaker [aut],
Kosuke Imai [aut],
Gary King [aut],
Olivia Lau [aut],
IQSS Harvard University [cph]
Maintainer: Christopher Gandrud <zelig.zee@gmail.com>
Diff between Zelig versions 5.0-15 dated 2017-02-09 and 5.0-16 dated 2017-02-28
Zelig-5.0-15/Zelig/man/factorize.Rd |only Zelig-5.0-16/Zelig/DESCRIPTION | 23 Zelig-5.0-16/Zelig/MD5 | 92 +- Zelig-5.0-16/Zelig/NEWS.md | 72 ++ Zelig-5.0-16/Zelig/R/assertions.R | 47 + Zelig-5.0-16/Zelig/R/interface.R |only Zelig-5.0-16/Zelig/R/model-bayes.R | 2 Zelig-5.0-16/Zelig/R/model-ls.R | 2 Zelig-5.0-16/Zelig/R/model-zelig.R | 543 ++++++++++------- Zelig-5.0-16/Zelig/R/plots.R | 62 + Zelig-5.0-16/Zelig/R/utils.R | 197 ++++-- Zelig-5.0-16/Zelig/R/wrappers.R | 120 ++- Zelig-5.0-16/Zelig/build |only Zelig-5.0-16/Zelig/inst/doc |only Zelig-5.0-16/Zelig/man/Median.Rd | 2 Zelig-5.0-16/Zelig/man/Mode.Rd | 6 Zelig-5.0-16/Zelig/man/Zelig-bayes-class.Rd | 2 Zelig-5.0-16/Zelig/man/Zelig-class.Rd | 22 Zelig-5.0-16/Zelig/man/ci_check.Rd |only Zelig-5.0-16/Zelig/man/coef-Zelig-method.Rd | 4 Zelig-5.0-16/Zelig/man/df.residual-Zelig-method.Rd |only Zelig-5.0-16/Zelig/man/extract_setrange.Rd |only Zelig-5.0-16/Zelig/man/extract_setx.Rd |only Zelig-5.0-16/Zelig/man/from_zelig_model.Rd | 2 Zelig-5.0-16/Zelig/man/is_simsrange1.Rd |only Zelig-5.0-16/Zelig/man/is_simsx1.Rd |only Zelig-5.0-16/Zelig/man/is_uninitializedField.Rd | 6 Zelig-5.0-16/Zelig/man/names-Zelig-method.Rd |only Zelig-5.0-16/Zelig/man/p_pull.Rd |only Zelig-5.0-16/Zelig/man/qi_slimmer.Rd |only Zelig-5.0-16/Zelig/man/reduce.Rd | 11 Zelig-5.0-16/Zelig/man/residuals-Zelig-method.Rd |only Zelig-5.0-16/Zelig/man/rm_intercept.Rd |only Zelig-5.0-16/Zelig/man/se_pull.Rd |only Zelig-5.0-16/Zelig/man/setx.Rd | 12 Zelig-5.0-16/Zelig/man/setx1.Rd |only Zelig-5.0-16/Zelig/man/sim.Rd | 4 Zelig-5.0-16/Zelig/man/statlevel.Rd | 2 Zelig-5.0-16/Zelig/man/summary-Zelig-method.Rd | 4 Zelig-5.0-16/Zelig/man/table.levels.Rd | 2 Zelig-5.0-16/Zelig/man/to_zelig_mi.Rd | 2 Zelig-5.0-16/Zelig/man/transformer.Rd |only Zelig-5.0-16/Zelig/man/zelig.Rd | 6 Zelig-5.0-16/Zelig/man/zelig_qi_to_df.Rd |only Zelig-5.0-16/Zelig/tests/testthat.R | 1 Zelig-5.0-16/Zelig/tests/testthat/test-arima.R | 12 Zelig-5.0-16/Zelig/tests/testthat/test-interface.R |only Zelig-5.0-16/Zelig/tests/testthat/test-ls.R | 50 + Zelig-5.0-16/Zelig/tests/testthat/test-poisson.R | 8 Zelig-5.0-16/Zelig/tests/testthat/test-poissonsurvey.R | 1 Zelig-5.0-16/Zelig/tests/testthat/test-probitsurvey.R | 2 Zelig-5.0-16/Zelig/tests/testthat/test-qislimmer.R |only Zelig-5.0-16/Zelig/tests/testthat/test-utils.R | 19 Zelig-5.0-16/Zelig/tests/testthat/test-weights.R | 8 Zelig-5.0-16/Zelig/tests/testthat/test-wrappers.R | 30 Zelig-5.0-16/Zelig/tests/testthat/test-zelig.R | 345 ++++++---- Zelig-5.0-16/Zelig/vignettes |only 57 files changed, 1132 insertions(+), 591 deletions(-)
Title: Forecast Verification Routines for Ensemble Forecasts of Weather
and Climate
Description: A collection of forecast verification routines developed for the SPECS
FP7 project. The emphasis is on comparative verification of ensemble forecasts of weather and climate.
Author: Stefan Siegert [aut, cre],
Jonas Bhend [ctb],
Igor Kroener [ctb],
Matteo De Felice [ctb]
Maintainer: Stefan Siegert <s.siegert@exeter.ac.uk>
Diff between SpecsVerification versions 0.5-0 dated 2017-01-20 and 0.5-1 dated 2017-02-28
DESCRIPTION | 18 ++--- MD5 | 115 +++++++++++++++++++------------------- NAMESPACE | 2 R/BrierDecomp.R | 2 R/ReliabilityDiagram.R | 29 ++++----- R/ScoreDiff.R | 2 R/SkillScore.R | 12 ++- R/SpecsVerification.R | 2 man/AbsErr.Rd | 1 man/Auc.Rd | 1 man/AucDiff.Rd | 1 man/BrierDecomp.Rd | 3 man/ClimEns.Rd | 1 man/Corr.Rd | 1 man/CorrDiff.Rd | 1 man/Detrend.Rd | 1 man/DressCrps.Rd | 1 man/DressCrpsDiff.Rd | 1 man/DressCrpss.Rd | 1 man/DressEnsemble.Rd | 1 man/DressIgn.Rd | 1 man/DressIgnDiff.Rd | 1 man/EnsBrier.Rd | 1 man/EnsBrierDiff.Rd | 1 man/EnsBrierSs.Rd | 1 man/EnsCrps.Rd | 1 man/EnsCrpsDiff.Rd | 1 man/EnsCrpss.Rd | 1 man/EnsQs.Rd | 1 man/EnsRps.Rd | 1 man/EnsRpsDiff.Rd | 1 man/EnsRpss.Rd | 1 man/FairBrierDiff.Rd | 1 man/FairBrierSs.Rd | 1 man/FairCrpsDiff.Rd | 1 man/FairCrpss.Rd | 1 man/FairRpsDiff.Rd | 1 man/FairRpss.Rd | 1 man/FitAkdParameters.Rd | 1 man/GaussCrps.Rd | 1 man/GaussCrpsDiff.Rd | 1 man/GaussCrpss.Rd | 1 man/GenerateToyData.Rd | 1 man/GetDensity.Rd | 1 man/PlotDressedEns.Rd | 1 man/PlotRankhist.Rd | 1 man/Rankhist.Rd | 1 man/ReliabilityDiagram.Rd | 5 - man/ScoreDiff.Rd | 3 man/SkillScore.Rd | 7 -- man/SpecsVerification.Rd | 1 man/SqErr.Rd | 1 man/TestRankhist.Rd | 1 man/auc_cpp.Rd | 1 man/aucdiff_cpp.Rd | 1 man/dresscrps_cpp.Rd | 1 man/enscrps_cpp.Rd | 1 man/eurotempforecast.Rd | 9 +- src/native_routine_registration.c |only 59 files changed, 105 insertions(+), 149 deletions(-)
More information about SpecsVerification at CRAN
Permanent link
Title: Recursively Partitioned Mixture Model
Description:
Recursively Partitioned Mixture Model for Beta and Gaussian Mixtures.
This is a model-based clustering algorithm that returns a hierarchy
of classes, similar to hierarchical clustering, but also similar to
finite mixture models.
Author: E. Andres Houseman, Sc.D. and Devin C. Koestler, Ph.D.
Maintainer: E. Andres Houseman <eahouseman@gmail.com>
Diff between RPMM versions 1.20 dated 2014-09-14 and 1.25 dated 2017-02-28
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NAMESPACE | 16 ++++++++++++++++ 3 files changed, 23 insertions(+), 7 deletions(-)
Title: Utilities for Working with R's Operators
Description: Provides a collection of utilities that allow programming with
R's operators. Routines allow classifying operators,
translating to and from an operator and its underlying function, and inverting
some operators (e.g. comparison operators), etc. All methods can be extended
to custom infix operators.
Author: Christopher Brown [aut, cre],
Decision Patterns [cph]
Maintainer: Christopher Brown <chris.brown@decisionpatterns.com>
Diff between operator.tools versions 1.4.4 dated 2015-05-26 and 1.6.3 dated 2017-02-28
operator.tools-1.4.4/operator.tools/R/operator-tools-package.R |only operator.tools-1.4.4/operator.tools/man/operator.tools-package.Rd |only operator.tools-1.6.3/operator.tools/DESCRIPTION | 32 ++++-- operator.tools-1.6.3/operator.tools/LICENSE | 2 operator.tools-1.6.3/operator.tools/MD5 | 47 ++++------ operator.tools-1.6.3/operator.tools/NAMESPACE | 3 operator.tools-1.6.3/operator.tools/NEWS.md |only operator.tools-1.6.3/operator.tools/R/init.R | 15 +++ operator.tools-1.6.3/operator.tools/R/operators.R | 4 operator.tools-1.6.3/operator.tools/R/zzz.R | 6 - operator.tools-1.6.3/operator.tools/README.md | 30 ++++++ operator.tools-1.6.3/operator.tools/man/can.operator.Rd | 5 - operator.tools-1.6.3/operator.tools/man/fun2name.Rd | 9 - operator.tools-1.6.3/operator.tools/man/initOps.Rd | 3 operator.tools-1.6.3/operator.tools/man/inverse.Rd | 15 +-- operator.tools-1.6.3/operator.tools/man/is.operator.Rd | 16 +-- operator.tools-1.6.3/operator.tools/man/not-in.Rd | 5 - operator.tools-1.6.3/operator.tools/man/operator.type.Rd | 18 ++- operator.tools-1.6.3/operator.tools/man/operators.Rd | 15 +-- operator.tools-1.6.3/operator.tools/man/rel.type.Rd | 18 +-- operator.tools-1.6.3/operator.tools/man/removeOperator.Rd | 13 +- operator.tools-1.6.3/operator.tools/man/setOperator.Rd | 13 +- operator.tools-1.6.3/operator.tools/tests/testthat/test-fun2name.R | 6 + operator.tools-1.6.3/operator.tools/tests/testthat/test-init.R | 10 +- operator.tools-1.6.3/operator.tools/tests/testthat/test-inverse.R | 4 operator.tools-1.6.3/operator.tools/tests/testthat/test-operators.R | 3 26 files changed, 176 insertions(+), 116 deletions(-)
More information about operator.tools at CRAN
Permanent link
Title: High-Dimensional Repeated Measures
Description: Methods for testing main and interaction effects in possibly
high-dimensional repeated measures in factorial designs. The observations
of the subjects are assumed to be multivariate normal.
It is possible to use up to 2 whole- and 3 subplot factors.
Author: Martin Happ [aut, cre], Harrar W. Solomon [aut], Arne C. Bathke [aut]
Maintainer: Martin Happ <martin.happ@aon.at>
Diff between HRM versions 0.4.3 dated 2016-11-15 and 0.5.0 dated 2017-02-28
DESCRIPTION | 12 +-- MD5 | 103 +++++++++++++------------- R/Repeated.R | 149 ++++++++++++++++++++++++++++++++++++--- R/f3.R |only R/plot.R | 2 man/EEG.Rd | 1 man/HRM.Rd | 2 man/hrm.1w.1f.Rd | 1 man/hrm.1w.2f.A.Rd | 1 man/hrm.1w.2f.AB.Rd | 1 man/hrm.1w.2f.ABC.Rd | 1 man/hrm.1w.2f.AC.Rd | 1 man/hrm.1w.2f.B.Rd | 1 man/hrm.1w.2f.BC.Rd | 1 man/hrm.1w.2f.C.Rd | 1 man/hrm.1w.3f.Rd |only man/hrm.2w.1f.A.Rd | 1 man/hrm.2w.1f.A2.Rd | 1 man/hrm.2w.1f.A2B.Rd | 1 man/hrm.2w.1f.AA2.Rd | 1 man/hrm.2w.1f.AA2B.Rd | 1 man/hrm.2w.1f.AB.Rd | 1 man/hrm.2w.1f.B.Rd | 1 man/hrm.2w.2f.A.Rd | 1 man/hrm.2w.2f.A2.Rd | 1 man/hrm.2w.2f.A2B.Rd | 1 man/hrm.2w.2f.A2BC.Rd | 1 man/hrm.2w.2f.A2C.Rd | 1 man/hrm.2w.2f.AA2.Rd | 1 man/hrm.2w.2f.AA2B.Rd | 1 man/hrm.2w.2f.AA2BC.Rd | 1 man/hrm.2w.2f.AA2C.Rd | 1 man/hrm.2w.2f.AB.Rd | 1 man/hrm.2w.2f.ABC.Rd | 1 man/hrm.2w.2f.AC.Rd | 1 man/hrm.2w.2f.B.Rd | 1 man/hrm.2w.2f.BC.Rd | 1 man/hrm.2w.2f.C.Rd | 1 man/hrm.A.unweighted.Rd | 1 man/hrm.A.weighted.Rd | 1 man/hrm.AB.Rd | 1 man/hrm.A_B.Rd | 1 man/hrm.B.Rd | 1 man/hrm.plot.Rd | 2 man/hrm.test.2.Rd | 1 man/hrm.test.2.between.Rd | 1 man/hrm.test.2.between.within.Rd | 1 man/hrm.test.2.one.Rd | 1 man/hrm.test.2.within.Rd | 1 man/hrm.test.3.between.Rd |only man/hrm.test.Rd | 1 man/hrm.test.dataframe.Rd | 6 - man/hrm.test.matrix.Rd | 2 man/hrm_test.Rd | 6 - 54 files changed, 208 insertions(+), 118 deletions(-)
Title: Distributed 'glm' for Big Data using 'ddR' API
Description: Distributed training and prediction of generalized linear models using 'ddR' (Distributed Data Structures) API in the 'ddR' package.
Author: Vishrut Gupta, Arash Fard
Maintainer: Indrajit Roy <indrajitroy@google.com>
Diff between glm.ddR versions 0.1.0 dated 2015-11-12 and 0.1.1 dated 2017-02-28
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Classes for 'GeoJSON'
Description: Classes for 'GeoJSON' to make working with 'GeoJSON' easier.
Includes S3 classes for 'GeoJSON' classes with brief summary output,
and a few methods such as extracting and addin bounding boxes,
properties, and coordinate reference systems; linting through
the geojsonlint package; and serializing to/from Geobuf binary 'GeoJSON'
format.
Author: Scott Chamberlain [aut, cre],
Jeroen Ooms [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between geojson versions 0.1.0 dated 2016-11-16 and 0.1.2 dated 2017-02-28
DESCRIPTION | 13 +++++-- LICENSE | 2 - MD5 | 70 +++++++++++++++++++-------------------- NEWS.md | 9 +++++ R/as.geojson.R | 12 ++++-- R/featurecollection.R | 9 +++-- R/geo_bbox.R | 14 +++++-- R/geobuf.R | 6 +++ R/linting.R | 5 -- R/zzz.R | 17 ++++++--- README.md | 12 +++--- inst/doc/geojson-operations.html | 4 +- inst/doc/geojson.html | 4 +- man/as.geojson.Rd | 15 +++----- man/bbox.Rd | 1 man/crs.Rd | 2 - man/feature.Rd | 1 man/featurecollection.Rd | 7 ++- man/geo_bbox.Rd | 9 ++--- man/geo_pretty.Rd | 1 man/geo_type.Rd | 1 man/geo_write.Rd | 1 man/geobuf.Rd | 7 ++- man/geojson-package.Rd | 4 +- man/geojson_data.Rd | 1 man/geometrycollection.Rd | 1 man/linestring.Rd | 1 man/linting_opts.Rd | 1 man/multilinestring.Rd | 1 man/multipoint.Rd | 1 man/multipolygon.Rd | 1 man/pipe.Rd | 1 man/point.Rd | 1 man/polygon.Rd | 1 man/properties.Rd | 1 tests/testthat/test-as.geojson.R | 10 ++--- 36 files changed, 134 insertions(+), 113 deletions(-)
Title: A Handbook of Statistical Analyses Using R (3rd Edition)
Description: Functions, data sets, analyses and examples from the
third edition of the book
`A Handbook of Statistical Analyses Using R' (Torsten Hothorn and Brian S.
Everitt, Chapman & Hall/CRC, 2014). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
Sweave source code for slides of selected chapters is included in
this package (see HSAUR3/inst/slides).
Author: Torsten Hothorn and Brian S. Everitt
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR3 versions 1.0-5 dated 2015-07-29 and 1.0-6 dated 2017-02-28
HSAUR3-1.0-5/HSAUR3/inst/slides/tables |only HSAUR3-1.0-6/HSAUR3/DESCRIPTION | 11 HSAUR3-1.0-6/HSAUR3/MD5 | 258 ++++------ HSAUR3-1.0-6/HSAUR3/build/vignette.rds |binary HSAUR3-1.0-6/HSAUR3/data/BCG.rda |binary HSAUR3-1.0-6/HSAUR3/data/CYGOB1.rda |binary HSAUR3-1.0-6/HSAUR3/data/Lanza.rda |binary HSAUR3-1.0-6/HSAUR3/data/birthdeathrates.rda |binary HSAUR3-1.0-6/HSAUR3/data/bladdercancer.rda |binary HSAUR3-1.0-6/HSAUR3/data/epilepsy.rda |binary HSAUR3-1.0-6/HSAUR3/data/foster.rda |binary HSAUR3-1.0-6/HSAUR3/data/heptathlon.rda |binary HSAUR3-1.0-6/HSAUR3/data/meteo.rda |binary HSAUR3-1.0-6/HSAUR3/data/orallesions.rda |binary HSAUR3-1.0-6/HSAUR3/data/phosphate.rda |binary HSAUR3-1.0-6/HSAUR3/data/pistonrings.rda |binary HSAUR3-1.0-6/HSAUR3/data/planets.rda |binary HSAUR3-1.0-6/HSAUR3/data/plasma.rda |binary HSAUR3-1.0-6/HSAUR3/data/polyps.rda |binary HSAUR3-1.0-6/HSAUR3/data/rearrests.rda |binary HSAUR3-1.0-6/HSAUR3/data/roomwidth.rda |binary HSAUR3-1.0-6/HSAUR3/data/schizophrenia.rda 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HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_recursive_partitioning.pdf |binary HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_simple_inference.R | 2 HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_simple_inference.Rnw | 2 HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_simple_inference.pdf |binary HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_simultaneous_inference.R | 2 HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_simultaneous_inference.Rnw | 2 HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_simultaneous_inference.pdf |binary HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_survival_analysis.R | 2 HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_survival_analysis.Rnw | 2 HSAUR3-1.0-6/HSAUR3/inst/doc/Ch_survival_analysis.pdf |binary HSAUR3-1.0-6/HSAUR3/inst/slides/Ch_density_estimation.Rnw | 2 HSAUR3-1.0-6/HSAUR3/inst/slides/setup.R | 4 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_analysing_longitudinal_dataI.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_analysing_longitudinal_dataII.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_analysis_of_variance.Rnw | 5 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_bayesian_inference.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_cluster_analysis.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_conditional_inference.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_density_estimation.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_errata.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_gam.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_graphical_display.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_introduction_to_R.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_logistic_regression_glm.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_meta_analysis.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_missing_values.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_multidimensional_scaling.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_multiple_linear_regression.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_principal_components_analysis.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_quantile_regression.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_recursive_partitioning.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_simple_inference.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_simultaneous_inference.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/Ch_survival_analysis.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/LaTeXBibTeX/setup.Rnw | 2 HSAUR3-1.0-6/HSAUR3/vignettes/tables/rec.tex | 12 126 files changed, 212 insertions(+), 222 deletions(-)
Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Description: Functions, data sets, analyses and examples from the
second edition of the book
`A Handbook of Statistical Analyses Using R' (Brian S. Everitt and Torsten
Hothorn, Chapman & Hall/CRC, 2008). The first chapter
of the book, which is entitled `An Introduction to R',
is completely included in this package, for all other chapters,
a vignette containing all data analyses is available. In addition,
the package contains Sweave code for producing slides for selected
chapters (see HSAUR2/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between HSAUR2 versions 1.1-14 dated 2015-07-28 and 1.1-15 dated 2017-02-28
DESCRIPTION | 10 +- MD5 | 108 +++++++++++++------------- build/vignette.rds |binary data/BCG.rda |binary data/CYGOB1.rda |binary data/Lanza.rda |binary data/birthdeathrates.rda |binary data/bladdercancer.rda |binary data/epilepsy.rda |binary data/foster.rda |binary data/heptathlon.rda |binary data/meteo.rda |binary data/orallesions.rda |binary data/phosphate.rda |binary data/pistonrings.rda |binary data/planets.rda |binary data/plasma.rda |binary data/polyps.rda |binary data/rearrests.rda |binary data/roomwidth.rda |binary data/schizophrenia.rda |binary data/schizophrenia2.rda |binary data/smoking.rda |binary data/students.rda |binary data/suicides.rda |binary data/toothpaste.rda |binary data/voting.rda |binary data/water.rda |binary data/watervoles.rda |binary data/waves.rda |binary data/weightgain.rda |binary inst/NEWS | 4 inst/doc/Ch_analysing_longitudinal_dataI.pdf |binary inst/doc/Ch_analysing_longitudinal_dataII.pdf |binary inst/doc/Ch_analysis_of_variance.R | 1 inst/doc/Ch_analysis_of_variance.Rnw | 1 inst/doc/Ch_analysis_of_variance.pdf |binary inst/doc/Ch_cluster_analysis.pdf |binary inst/doc/Ch_conditional_inference.pdf |binary inst/doc/Ch_density_estimation.pdf |binary inst/doc/Ch_errata.pdf |binary inst/doc/Ch_gam.pdf |binary inst/doc/Ch_graphical_display.pdf |binary inst/doc/Ch_introduction_to_R.pdf |binary inst/doc/Ch_logistic_regression_glm.pdf |binary inst/doc/Ch_meta_analysis.pdf |binary inst/doc/Ch_multidimensional_scaling.pdf |binary inst/doc/Ch_multiple_linear_regression.pdf |binary inst/doc/Ch_principal_components_analysis.pdf |binary inst/doc/Ch_recursive_partitioning.pdf |binary inst/doc/Ch_simple_inference.pdf |binary inst/doc/Ch_simultaneous_inference.pdf |binary inst/doc/Ch_survival_analysis.pdf |binary vignettes/Ch_analysis_of_variance.Rnw | 1 vignettes/tables/rec.tex | 12 +- 55 files changed, 69 insertions(+), 68 deletions(-)
Title: Lightweight GitHub Package Installer
Description: A lightweight, vectorized drop-in replacement for
'devtools::install_github()' that uses native git and R methods to clone and
install a package from GitHub. From v0.2.15, also includes an analogue for
'install_bitbucket()'.
Author: Thomas J. Leeper [aut, cre],
Imanuel Costigan [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between ghit versions 0.2.15 dated 2017-01-22 and 0.2.17 dated 2017-02-28
DESCRIPTION | 10 +-- MD5 | 27 ++++----- NEWS.md | 10 +++ R/build_and_insert.R | 4 - R/checkout_github.R | 2 R/clean_suggests.R |only R/do_install.R | 11 ++- R/install_bitbucket.R | 4 - R/install_github.R | 4 - R/make_drat.R | 6 +- R/preinstall_suggests.R | 5 + man/ghit.Rd | 1 man/install_bitbucket.Rd | 6 +- man/install_github.Rd | 9 +-- tests/testthat/test_install.R | 120 +++++++++++++++++++++--------------------- 15 files changed, 120 insertions(+), 99 deletions(-)
Title: Tools for Developing Diagnostic Messages
Description: A number of utilities for developing and maintaining error, warning,
and other messages in R packages, including checking for consistency across
messages, spell-checking messages, and building message translations into
various languages for purposes of localization.
Author: Thomas J. Leeper [aut, cre]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between msgtools versions 0.2.4 dated 2017-01-08 and 0.2.6 dated 2017-02-28
DESCRIPTION | 14 - MD5 | 51 ++--- NEWS.md | 12 + R/dummy_pkg.R | 7 R/install_translations.R | 31 +-- R/template.R | 18 + R/translations.R | 14 + README.md | 2 inst/doc/Tutorial.R | 2 inst/doc/Tutorial.Rmd | 4 inst/doc/Tutorial.html | 47 ++-- inst/po |only man/dummy_pkg.Rd | 5 man/edit_translation.Rd | 7 man/get_message_distances.Rd | 7 man/get_messages.Rd | 7 man/gettext.Rd | 1 man/install.Rd | 1 man/msgtools-package.Rd | 7 man/spell_check_msgs.Rd | 7 man/templates.Rd | 13 - man/translations.Rd | 11 - po/R-es.po | 438 +++++++++++++++++++++---------------------- po/R-msgtools.pot | 17 + tests/test-all.R | 5 tests/testthat/test.R | 14 + vignettes/Tutorial.Rmd | 4 27 files changed, 406 insertions(+), 340 deletions(-)
Title: Analyzing Case-Parent Triad and/or Case-Control Data with SNP
Haplotypes
Description: Performs genetic association analyses of case-parent triad (trio) data with multiple markers. It can also incorporate complete or incomplete control triads, for instance independent control children. Estimation is based on haplotypes, for instance SNP haplotypes, even though phase is not known from the genetic data. Haplin estimates relative risk (RR + conf.int.) and p-value associated with each haplotype. It uses maximum likelihood estimation to make optimal use of data from triads with missing genotypic data, for instance if some SNPs has not been typed for some individuals. Haplin also allows estimation of effects of maternal haplotypes and parent-of-origin effects, particularly appropriate in perinatal epidemiology. Haplin allows special models, like X-inactivation, to be fitted on the X-chromosome. A GxE analysis allows testing interactions between environment and all estimated genetic effects.
Author: Hakon K. Gjessing
Maintainer: Hakon K. Gjessing <hakon.gjessing@fhi.no>
Diff between Haplin versions 6.0.1 dated 2016-05-26 and 6.2.0 dated 2017-02-28
DESCRIPTION | 8 ++-- MD5 | 52 ++++++++++++++++----------- NAMESPACE | 65 +++++++++++++++++++--------------- R/f.HWE.R | 2 - R/f.HWE.design.R | 2 - R/f.a.asymp.R |only R/f.b.asymp.R |only R/f.beta.haplo.freq.asymp.R |only R/f.check.pars.R | 1 R/f.design.get.R |only R/f.design.make.R | 62 ++++++++++++++++++++++---------- R/f.grid.asymp.R |only R/f.mat.asymp.R |only R/f.match.R |only R/f.pos.match.R | 26 ++++++++++++- R/f.prob.asymp.R |only R/f.sim.R | 1 R/f.var.covar.asymp.R |only R/hapCovar.R |only R/hapPower.R | 8 +++- R/hapPowerAsymp.R |only R/hapRun.R | 8 ++-- R/hapSim.R | 32 ++++++++-------- R/haplin.R | 2 - R/postTest.R | 4 ++ R/print.summary.haplin.R | 2 - inst/doc/Haplin_data_format.pdf |binary inst/doc/Haplin_power.pdf |binary man/hapPower.Rd | 22 +++++------ man/hapPowerAsymp.Rd |only man/hapRun.Rd | 25 +++++++------ man/hapSim.Rd | 8 +++- man/haptable.Rd | 76 ++++++++++++++++++++++++---------------- 33 files changed, 254 insertions(+), 152 deletions(-)
Title: Lumen Database API Client
Description: A simple client for the Lumen Database <https://lumendatabase.org/>
(formerly Chilling Effects) API.
Author: Thomas J. Leeper [aut, cre]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between lumendb versions 0.2.1 dated 2017-01-22 and 0.2.2 dated 2017-02-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/http.R | 8 ++++---- tests/testthat.R | 4 +++- 5 files changed, 19 insertions(+), 13 deletions(-)
Title: A Robust, High Performance JSON Parser and Generator for R
Description: A fast JSON parser and generator optimized for statistical data
and the web. Started out as a fork of 'RJSONIO', but has been completely
rewritten in recent versions. The package offers flexible, robust, high
performance tools for working with JSON in R and is particularly powerful
for building pipelines and interacting with a web API. The implementation is
based on the mapping described in the vignette (Ooms, 2014). In addition to
converting JSON data from/to R objects, 'jsonlite' contains functions to
stream, validate, and prettify JSON data. The unit tests included with the
package verify that all edge cases are encoded and decoded consistently for
use with dynamic data in systems and applications.
Author: Jeroen Ooms, Duncan Temple Lang, Lloyd Hilaiel
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between jsonlite versions 1.2 dated 2016-12-30 and 1.3 dated 2017-02-28
DESCRIPTION | 10 - LICENSE | 2 MD5 | 77 ++++++------ NAMESPACE | 3 NEWS | 7 + R/asJSON.data.frame.R | 8 - R/asJSON.list.R | 8 - R/cleannames.R | 4 R/parseJSON.R | 2 R/push_parser.R | 24 --- R/simplify.R | 18 ++ R/simplifyDataFrame.R | 6 R/stream.R | 2 inst/doc/json-aaquickstart.html | 55 ++++----- inst/doc/json-apis.Rmd | 129 ++++++++++----------- inst/doc/json-apis.html | 146 +++++++++++------------- inst/doc/json-mapping.pdf |binary inst/doc/json-opencpu.pdf |binary inst/doc/json-paging.Rmd | 2 inst/doc/json-paging.html | 199 ++++++++++++++++----------------- man/base64.Rd | 1 man/flatten.Rd | 1 man/fromJSON.Rd | 1 man/prettify.Rd | 1 man/rbind.pages.Rd | 1 man/read_json.Rd | 1 man/serializeJSON.Rd | 1 man/stream_in.Rd | 1 man/unbox.Rd | 1 man/validate.Rd | 1 src/collapse_pretty.c | 4 src/escape_chars.c | 114 +++++++++--------- src/is_recordlist.c | 8 - src/parse.c | 8 - src/prettify.c | 1 src/push_parser.c | 94 ++++++++------- src/register.c |only src/yajl/yajl_encode.c | 2 tests/testthat/helper-toJSON.R | 2 tests/testthat/test-libjson-escaping.R | 25 +++- 40 files changed, 489 insertions(+), 481 deletions(-)
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearisation of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow,Theory, vol. I: Methods and Applications; vol. II: Theory. 1953, New York: John Wiley and Sons), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y. G., 2015, <doi:10.1111/rssa.12116>). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.8.4 dated 2017-02-02 and 0.8.6 dated 2017-02-28
DESCRIPTION | 8 MD5 | 106 ++++--- NAMESPACE | 3 R/domain.R | 208 +++++++++++---- R/incPercentile.R | 148 +++------- R/lin.ratio.R | 41 +-- R/linarpr.R | 210 +++++---------- R/linarpt.R | 252 +++++++----------- R/linarr.R | 312 ++++++++-------------- R/lingini.R | 200 +++++--------- R/lingini2.R | 165 ++++-------- R/lingpg.R | 242 ++++++----------- R/linpoormed.R | 214 ++++++--------- R/linqsr.R | 217 ++++++--------- R/linrmir.R | 288 ++++++++------------- R/linrmpg.R | 253 +++++++----------- R/residual_est.R | 55 +--- R/vardchangannual.R | 502 ++++++++++-------------------------- R/vardchanges.R | 505 +++++++++++------------------------- R/vardchangespoor.R | 532 ++++++++++---------------------------- R/vardcros.R | 543 ++++++++++++--------------------------- R/vardcrosannual.R | 409 +++++++---------------------- R/vardcrospoor.R | 550 +++++++++++----------------------------- R/vardgpgchangannual.R |only R/vardgpgcrosannual.R |only R/vardom.R | 333 +++++++----------------- R/vardom_othstr.R | 240 +++++------------ R/vardomh.R | 427 +++++++++---------------------- R/variance_est.R | 110 ++------ R/variance_othstr.R | 93 +----- R/varpoord.R | 628 ++++++++++++++-------------------------------- inst/NEWS | 4 man/incPercentile.Rd | 21 - man/lin.ratio.Rd | 5 man/linarpr.Rd | 4 man/linarpt.Rd | 5 man/linarr.Rd | 4 man/lingini.Rd | 5 man/lingini2.Rd | 6 man/lingpg.Rd | 5 man/linpoormed.Rd | 6 man/linqsr.Rd | 5 man/linrmir.Rd | 5 man/linrmpg.Rd | 6 man/residual_est.Rd | 6 man/vardchangannual.Rd | 5 man/vardchanges.Rd | 5 man/vardcros.Rd | 43 +-- man/vardcrospoor.Rd | 7 man/vardgpgchangannual.Rd |only man/vardgpgcrosannual.Rd |only man/vardom_othstr.Rd | 36 +- man/vardpoor-package.Rd | 4 man/variance_est.Rd | 4 man/variance_othstr.Rd | 8 man/varpoord.Rd | 2 56 files changed, 2780 insertions(+), 5215 deletions(-)
Title: Topic Models
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models
(CTM) by David M. Blei and co-authors and the C++ code
for fitting LDA models using Gibbs sampling by Xuan-Hieu
Phan and co-authors.
Author: Bettina Grün [aut, cre],
Kurt Hornik [aut]
Maintainer: Bettina Grün <Bettina.Gruen@jku.at>
Diff between topicmodels versions 0.2-4 dated 2016-05-23 and 0.2-5 dated 2017-02-28
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NAMESPACE | 2 +- R/ctm.R | 5 ++--- R/lda.R | 15 ++++++--------- inst/NEWS.Rd | 11 +++++++++++ inst/doc/topicmodels.R | 43 +++++++++++++++++++++---------------------- inst/doc/topicmodels.Rnw | 11 +++++------ inst/doc/topicmodels.pdf |binary src/init.c |only vignettes/topicmodels.Rnw | 11 +++++------ 11 files changed, 65 insertions(+), 60 deletions(-)
Title: Robust Sparse PCA using the ROSPCA Algorithm
Description: Implementation of robust sparse PCA using the ROSPCA algorithm
of Hubert et al. (2016) <DOI:10.1080/00401706.2015.1093962>.
Author: Tom Reynkens [aut, cre],
Valentin Todorov [ctb] (Original R code for PcaHubert and diagnostic
plot in rrcov package),
Mia Hubert [ctb],
Eric Schmitt [ctb],
Tim Verdonck [ctb]
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between rospca versions 1.0.0 dated 2017-01-16 and 1.0.1 dated 2017-02-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Rospca.R | 41 +++++++++++++++++++++++++++++++++-------- inst/NEWS.Rd | 9 ++++++++- man/rospca.Rd | 2 +- 5 files changed, 50 insertions(+), 18 deletions(-)
Title: Resource Selection (Probability) Functions for Use-Availability
Data
Description: Resource Selection (Probability) Functions
for use-availability wildlife data
based on weighted distributions as described in
Lele and Keim (2006) <doi:10.1890/0012-9658(2006)87[3021:WDAEOR]2.0.CO;2>,
Lele (2009) <doi:10.2193/2007-535>,
and Solymos & Lele (2016) <doi:10.1111/2041-210X.12432>.
Author: Subhash R. Lele [aut], Jonah L. Keim [aut], Peter Solymos [aut, cre]
Maintainer: Peter Solymos <solymos@ualberta.ca>
Diff between ResourceSelection versions 0.3-1 dated 2017-02-11 and 0.3-2 dated 2017-02-28
DESCRIPTION | 8 ++--- MD5 | 25 +++++++++--------- NAMESPACE | 2 - R/logLik.rsf.R | 1 R/predict.rsf.R | 2 + R/rsf.R | 13 ++++++--- R/rsf.fit.R | 53 +++++++++++++++------------------------ R/rsf.null.R |only R/rspf.R | 12 +++++--- R/summary.rsf.R | 4 +- R/vcov.rsf.R | 5 ++- R/zzz.R | 14 ++++++++-- man/ResourceSelection-package.Rd | 6 +++- man/rsf.Rd | 49 +++++++++++++++++++++++++++++++++--- 14 files changed, 126 insertions(+), 68 deletions(-)
More information about ResourceSelection at CRAN
Permanent link
Title: Differential Geometric Least Angle Regression
Description: Differential geometric least angle regression method for fitting
sparse generalized linear models. In this version of the package, the user can fit
models specifying Gaussian, Poisson, Binomial, Gamma and Inverse Gaussian family.
Furthermore, several link functions can be used to model the relationship between the
conditional expected value of the response variable and the linear predictor. The
solution curve can be computed using an efficient predictor-corrector or a cyclic
coordinate descent algorithm, as described in the paper linked to via the URL below.
Author: Luigi Augugliaro
Maintainer: Luigi Augugliaro <luigi.augugliaro@unipa.it>
Diff between dglars versions 1.0.5 dated 2014-08-09 and 2.0.0 dated 2017-02-28
dglars-1.0.5/dglars/R/make_ru_pc.R |only dglars-1.0.5/dglars/src/dglars_ccd.f90 |only dglars-1.0.5/dglars/src/dglars_pc_b.f90 |only dglars-1.0.5/dglars/src/dglars_pc_p.f90 |only dglars-2.0.0/dglars/ChangeLog | 16 + dglars-2.0.0/dglars/DESCRIPTION | 27 - dglars-2.0.0/dglars/MD5 | 112 ++++--- dglars-2.0.0/dglars/NAMESPACE | 36 ++ dglars-2.0.0/dglars/R/AIC.dglars.R |only dglars-2.0.0/dglars/R/BIC.dglars.R |only dglars-2.0.0/dglars/R/coef.cvdglars.R | 2 dglars-2.0.0/dglars/R/coef.dglars.R | 11 dglars-2.0.0/dglars/R/cvdglars.R | 17 - dglars-2.0.0/dglars/R/cvdglars.fit.R | 255 ++++++++++++---- dglars-2.0.0/dglars/R/cvdglars_ccd.R | 59 ++- dglars-2.0.0/dglars/R/cvdglars_pc.R | 48 +-- dglars-2.0.0/dglars/R/d2mu_de2_mk.R |only dglars-2.0.0/dglars/R/d2th_dmu2_mk.R |only dglars-2.0.0/dglars/R/dglars.R | 18 - dglars-2.0.0/dglars/R/dglars.fit.R | 207 +++++++++++-- dglars-2.0.0/dglars/R/dglars_ccd.R | 73 +++- dglars-2.0.0/dglars/R/dglars_pc.R | 95 ++++-- dglars-2.0.0/dglars/R/gdf.R | 117 +++++-- dglars-2.0.0/dglars/R/logLik.dglars.R |only dglars-2.0.0/dglars/R/make_coef.R | 4 dglars-2.0.0/dglars/R/make_cvdglars.R | 18 - dglars-2.0.0/dglars/R/make_dglars.R | 25 - dglars-2.0.0/dglars/R/make_ru.R |only dglars-2.0.0/dglars/R/make_summary_table.R | 51 ++- dglars-2.0.0/dglars/R/phihat.R |only dglars-2.0.0/dglars/R/plot.cvdglars.R | 30 + dglars-2.0.0/dglars/R/plot.dglars.R | 107 +++--- dglars-2.0.0/dglars/R/predict.dglars.R |only dglars-2.0.0/dglars/R/print.cvdglars.R | 22 + dglars-2.0.0/dglars/R/print.dglars.R | 34 +- dglars-2.0.0/dglars/R/print.gof_dglars.R |only dglars-2.0.0/dglars/R/print.loglik_dglars.R |only dglars-2.0.0/dglars/R/setDiff.R | 14 dglars-2.0.0/dglars/R/summary.dglars.R | 89 +++-- dglars-2.0.0/dglars/man/AIC.dglars.Rd |only dglars-2.0.0/dglars/man/coef.cvdglars.Rd | 18 - dglars-2.0.0/dglars/man/coef.dglars.Rd | 60 ++- dglars-2.0.0/dglars/man/cvdglars.Rd | 300 ++++++++++++------ dglars-2.0.0/dglars/man/dglars-internal.Rd | 12 dglars-2.0.0/dglars/man/dglars-package.Rd | 33 +- dglars-2.0.0/dglars/man/dglars.Rd | 432 ++++++++++++++++++--------- dglars-2.0.0/dglars/man/gdf.Rd | 35 +- dglars-2.0.0/dglars/man/logLik.dglars.Rd |only dglars-2.0.0/dglars/man/phihat.Rd |only dglars-2.0.0/dglars/man/plot.cvdglars.Rd | 22 - dglars-2.0.0/dglars/man/plot.dglars.Rd | 64 ++-- dglars-2.0.0/dglars/man/predict.dglars.Rd |only dglars-2.0.0/dglars/man/print.cvdglars.Rd | 15 dglars-2.0.0/dglars/man/print.dglars.Rd | 62 ++- dglars-2.0.0/dglars/man/summary.dglars.Rd | 147 +++++---- dglars-2.0.0/dglars/src/Makevars | 3 dglars-2.0.0/dglars/src/ccd_bin_c.f90 |only dglars-2.0.0/dglars/src/ccd_cvdglars.f90 |only dglars-2.0.0/dglars/src/ccd_pois_c.f90 |only dglars-2.0.0/dglars/src/dglars.h |only dglars-2.0.0/dglars/src/init.c |only dglars-2.0.0/dglars/src/pc_bin_c.f90 |only dglars-2.0.0/dglars/src/pc_bin_g.f90 |only dglars-2.0.0/dglars/src/pc_cvdglars.f90 |only dglars-2.0.0/dglars/src/pc_gamma_c.f90 |only dglars-2.0.0/dglars/src/pc_gamma_g.f90 |only dglars-2.0.0/dglars/src/pc_gaussian_c.f90 |only dglars-2.0.0/dglars/src/pc_gaussian_g.f90 |only dglars-2.0.0/dglars/src/pc_invgaus_c.f90 |only dglars-2.0.0/dglars/src/pc_invgaus_g.f90 |only dglars-2.0.0/dglars/src/pc_pois_c.f90 |only dglars-2.0.0/dglars/src/pc_pois_g.f90 |only dglars-2.0.0/dglars/src/predict.f90 |only dglars-2.0.0/dglars/src/shared.f90 | 443 ++++++++++++++++++++-------- dglars-2.0.0/dglars/src/tools.f90 |only 75 files changed, 2165 insertions(+), 968 deletions(-)
Title: Generate Random 'WKT' or 'GeoJSON'
Description: Generate random positions (latitude/longitude),
Well-known text ('WKT') points or polygons, or 'GeoJSON' points or
polygons.
Author: Scott Chamberlain [aut, cre],
Noam Ross [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between randgeo versions 0.1.0 dated 2017-02-18 and 0.2.0 dated 2017-02-28
DESCRIPTION | 17 ++- MD5 | 50 +++++------ NEWS.md | 19 ++++ R/geo_point.R | 8 + R/geo_polygon.R | 53 ++++++------ R/randgeo-package.R | 32 ++++++- R/rg_position.R | 14 ++- R/to_wkt.R | 3 R/wkt_point.R | 7 - R/wkt_polygon.R | 15 +-- R/zzz.R | 12 +- README.md | 78 +++++++++++------- inst/doc/randgeo_vignette.Rmd | 6 - inst/doc/randgeo_vignette.html | 164 +++++++++++++++++++------------------- man/geo_point.Rd | 7 - man/geo_polygon.Rd | 15 +-- man/randgeo-package.Rd | 36 +++++++- man/rg_position.Rd | 13 ++- man/wkt_point.Rd | 7 - man/wkt_polygon.Rd | 15 +-- tests/testthat/test-geo_point.R | 17 +++ tests/testthat/test-geo_polygon.R | 17 +++ tests/testthat/test-rg_position.R | 20 +++- tests/testthat/test-wkt_point.R | 19 +++- tests/testthat/test-wkt_polygon.R | 22 ++++- vignettes/randgeo_vignette.Rmd | 6 - 26 files changed, 438 insertions(+), 234 deletions(-)
Title: Survival Trees to Fit Left-Truncated and Right-Censored and
Interval-Censored Survival Data
Description: Recursive partition algorithms designed for fitting survival tree with left-truncated and right censored (LTRC) data, as well as interval-censored data.
The LTRC trees can also be used to fit survival tree with time-varying covariates.
Author: Wei Fu [aut, cre],
Jeffrey Simonoff [aut]
Maintainer: Wei Fu <weifu.scott@gmail.com>
Diff between LTRCtrees versions 0.1.5 dated 2016-09-02 and 0.5.0 dated 2017-02-28
DESCRIPTION | 19 ++++++-------- MD5 | 26 ++++++++++--------- NAMESPACE | 1 R/ICtree.R |only R/LTRCART.R | 4 +-- R/LTRCIT.R | 14 +++++----- build/vignette.rds |binary inst/doc/LTRCtrees.R | 14 +++++++++- inst/doc/LTRCtrees.Rmd | 42 +++++++++++++++++++++---------- inst/doc/LTRCtrees.html | 64 +++++++++++++++++++++++++++++++++--------------- man/ICtree.Rd |only man/LTRCART.Rd | 5 +-- man/LTRCIT.Rd | 13 ++++----- man/Pred.rpart.Rd | 1 vignettes/LTRCtrees.Rmd | 42 +++++++++++++++++++++---------- 15 files changed, 155 insertions(+), 90 deletions(-)
Title: Fit GLD Regression Model and GLD Quantile Regression Model to
Empirical Data
Description: Owing to the rich shapes of Generalised Lambda Distributions (GLDs), GLD standard/quantile regression is a competitive flexible model compared to standard/quantile regression. The proposed method has some major advantages: 1) it provides a reference line which is very robust to outliers with the attractive property of zero mean residuals and 2) it gives a unified, elegant quantile regression model from the reference line with smooth regression coefficients across different quantiles. The goodness of fit of the proposed model can be assessed via QQ plots and Kolmogorov-Smirnov tests and data driven smooth test, to ensure the appropriateness of the statistical inference under consideration. Statistical distributions of coefficients of the GLD regression line are obtained using simulation, and interval estimates are obtained directly from simulated data.
Author: Steve Su, with contributions from: R core team for qqgld.default function.
Maintainer: Steve Su <allegro.su@gmail.com>
Diff between GLDreg versions 1.0.6 dated 2017-01-29 and 1.0.7 dated 2017-02-28
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/GLD.lm.full.R | 4 ++-- man/GLDreg-package.Rd | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Functions for Time Series Analysis
Description: Includes non-parametric estimators and tests for time series analysis. The functions are to test for presence of possibly non-monotonic trends and for synchronism of trends in multiple time series, using modern bootstrap techniques and robust non-parametric difference-based estimators.
Author: Vyacheslav Lyubchich [aut, cre],
Yulia R. Gel [aut],
Calvin Chu [ctb],
Xin Huang [ctb],
Ethan D. Schaeffer [ctb],
Xingyu Wang [ctb]
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>
Diff between funtimes versions 3.0 dated 2017-01-15 and 4.0 dated 2017-02-28
funtimes-3.0/funtimes/R/purity.R |only funtimes-3.0/funtimes/man/purity.Rd |only funtimes-4.0/funtimes/DESCRIPTION | 29 +++++++++++++++--------- funtimes-4.0/funtimes/MD5 | 14 +++++++---- funtimes-4.0/funtimes/NAMESPACE | 5 +++- funtimes-4.0/funtimes/R/DownhillRiding(DR).R |only funtimes-4.0/funtimes/R/Purity.R |only funtimes-4.0/funtimes/R/notrend.test.R |only funtimes-4.0/funtimes/man/BICC.Rd | 2 - funtimes-4.0/funtimes/man/DownhillRiding(DR).Rd |only funtimes-4.0/funtimes/man/Purity.Rd |only funtimes-4.0/funtimes/man/notrend.test.Rd |only 12 files changed, 33 insertions(+), 17 deletions(-)
Title: Chi-Square and Exact Tests for Non-Parametric Functional
Dependencies
Description: Statistical hypothesis testing methods for non-parametric
functional dependencies using asymptotic chi-square or exact statistics. These
tests reveal evidence for causality based on the causality-by-functionality
principle. They include asymptotic functional chi-square tests, an exact
functional test, a comparative functional chi-square test, and also a
comparative chi-square test. The normalized non-constant functional chi-square
test was used by Best Performer NMSUSongLab in HPN-DREAM (DREAM8) Breast
Cancer Network Inference Challenges. For continuous data, these tests offer an
advantage over regression analysis when a parametric functional form cannot be
assumed; for categorical data, they provide a novel means to assess directional
dependencies not possible with symmetrical Pearson's chi-square or Fisher's
exact tests.
Author: Yang Zhang [aut], Hua Zhong [aut], Ruby Sharma [aut], Sajal Kumar [aut], Joe Song [aut, cre]
Maintainer: Joe Song <joemsong@cs.nmsu.edu>
Diff between FunChisq versions 2.3.3 dated 2016-09-02 and 2.4.0 dated 2017-02-28
DESCRIPTION | 30 +++++++++++++++++++++----- MD5 | 38 +++++++++++++++++++--------------- NAMESPACE | 4 ++- NEWS | 14 +++++++++++- R/RcppExports.R | 2 - R/house_noise_model.R |only R/simulate_tables.R |only build/vignette.rds |binary inst/CITATION | 18 ++++++++-------- inst/doc/exact.fun.test.html | 4 +-- inst/doc/fun.chisq.test.html | 4 +-- man/FunChisq-package.Rd | 26 ++++++++++++++++------- man/cp.chisq.test.Rd | 14 +++++++++--- man/cp.fun.chisq.test.Rd | 10 ++++++++ man/fun.chisq.test.Rd | 18 ++++++++++++++-- man/house_noise_model.Rd |only man/simulate_tables.Rd |only man/test.interactions.Rd | 12 +++++++++- src/RcppExports.cpp | 18 ++++++++-------- src/main.cpp | 28 +++++++++++++++++++++++++ tests/testthat.R | 1 tests/testthat/test_HouseNoiseModel.R |only tests/testthat/test_simulate.R |only 23 files changed, 179 insertions(+), 62 deletions(-)
Title: Large-Scale Social Network Analysis
Description: We present an implementation of the algorithms required to simulate large-scale social networks and retrieve their most relevant metrics.
Author: Nazrul Shaikh [aut, cre],
Xu Dong [aut],
Luis Castro [aut],
Christian Llano [ctb]
Maintainer: Nazrul Shaikh <networkgroupr@gmail.com>
Diff between fastnet versions 0.1.1 dated 2016-12-30 and 0.1.2 dated 2017-02-28
DESCRIPTION | 8 +- MD5 | 106 +++++++++++++++++++------------------ NAMESPACE | 3 + NEWS.md | 4 + R/from.adjacency.R |only R/from.edgelist.R |only R/from.igraph.R |only R/metric.distance.apl.R | 16 +++-- R/metric.distance.diameter.R | 11 ++- R/metric.distance.effdia.R | 13 ++-- R/metric.distance.meanecc.R | 1 R/metric.distance.medianecc.R | 5 + R/metric.distance.mpl.R | 12 ++-- man/dist.deg.Rd | 1 man/draw.degdist.Rd | 1 man/draw.degdist.cum.Rd | 1 man/draw.degdist.cum.log.Rd | 1 man/draw.degdist.log.Rd | 1 man/draw.net.Rd | 1 man/from.adjacency.Rd |only man/from.edgelist.Rd |only man/from.igraph.Rd |only man/histo.dist.Rd | 1 man/metric.cluster.global.Rd | 7 +- man/metric.cluster.mean.Rd | 7 +- man/metric.cluster.median.Rd | 7 +- man/metric.degree.effective.Rd | 1 man/metric.degree.entropy.Rd | 7 +- man/metric.degree.max.Rd | 1 man/metric.degree.max.efficient.Rd | 1 man/metric.degree.mean.Rd | 1 man/metric.degree.median.Rd | 1 man/metric.degree.min.Rd | 1 man/metric.degree.sd.Rd | 1 man/metric.distance.apl.Rd | 7 +- man/metric.distance.diameter.Rd | 7 +- man/metric.distance.effdia.Rd | 7 +- man/metric.distance.meanecc.Rd | 7 +- man/metric.distance.medianecc.Rd | 7 +- man/metric.distance.mpl.Rd | 7 +- man/metric.eigen.mean.Rd | 7 +- man/metric.eigen.median.Rd | 7 +- man/metric.eigen.value.Rd | 7 +- man/metric.graph.density.Rd | 1 man/neighbors.Rd | 1 man/net.barabasi.albert.Rd | 7 +- man/net.caveman.Rd | 7 +- man/net.complete.Rd | 1 man/net.erdos.renyi.gnm.Rd | 7 +- man/net.erdos.renyi.gnp.Rd | 7 +- man/net.holme.kim.Rd | 7 +- man/net.random.plc.Rd | 7 +- man/net.rewired.caveman.Rd | 7 +- man/net.ring.lattice.Rd | 7 +- man/net.watts.strogatz.Rd | 7 +- man/preview.deg.Rd | 1 man/preview.net.Rd | 1 57 files changed, 166 insertions(+), 186 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing, fitting of distributions are the main function included.
Author: Michail Tsagris [aut, cre], Giorgos Athineou [aut]
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Compositional versions 2.2 dated 2016-12-13 and 2.3 dated 2017-02-28
Compositional-2.2/Compositional/R/spat.med.R |only Compositional-2.2/Compositional/man/spat.med.Rd |only Compositional-2.3/Compositional/DESCRIPTION | 10 - Compositional-2.3/Compositional/MD5 | 96 +++++------ Compositional-2.3/Compositional/NAMESPACE | 29 +-- Compositional-2.3/Compositional/R/alfa.R | 4 Compositional-2.3/Compositional/R/alfa.knn.R | 2 Compositional-2.3/Compositional/R/alfadist.R | 5 Compositional-2.3/Compositional/R/alfainv.R | 5 Compositional-2.3/Compositional/R/alfaknn.tune.R | 4 Compositional-2.3/Compositional/R/bivt.contour.R | 4 Compositional-2.3/Compositional/R/comp.den.R | 6 Compositional-2.3/Compositional/R/comp.reg.R | 5 Compositional-2.3/Compositional/R/comp.test.R | 6 Compositional-2.3/Compositional/R/compknn.tune.R | 20 -- Compositional-2.3/Compositional/R/ddiri.R | 1 Compositional-2.3/Compositional/R/diri.est.R | 2 Compositional-2.3/Compositional/R/diri.nr.R | 12 - Compositional-2.3/Compositional/R/diri.reg.R | 7 Compositional-2.3/Compositional/R/diri.reg2.R | 3 Compositional-2.3/Compositional/R/dirimean.test.R | 5 Compositional-2.3/Compositional/R/eel.test1.R | 30 +-- Compositional-2.3/Compositional/R/eel.test2.R | 33 +-- Compositional-2.3/Compositional/R/el.test1.R | 6 Compositional-2.3/Compositional/R/el.test2.R | 10 - Compositional-2.3/Compositional/R/hotel1T2.R | 2 Compositional-2.3/Compositional/R/hotel2T2.R | 3 Compositional-2.3/Compositional/R/james.R | 3 Compositional-2.3/Compositional/R/js.compreg.R | 6 Compositional-2.3/Compositional/R/kl.compreg.R | 4 Compositional-2.3/Compositional/R/maov.R | 3 Compositional-2.3/Compositional/R/maovjames.R | 3 Compositional-2.3/Compositional/R/mkde.R | 9 - Compositional-2.3/Compositional/R/mkde.tune.R | 3 Compositional-2.3/Compositional/R/multivreg.R | 2 Compositional-2.3/Compositional/R/multivt.R | 2 Compositional-2.3/Compositional/R/ols.compreg.R | 13 - Compositional-2.3/Compositional/R/rcompnorm.R | 1 Compositional-2.3/Compositional/R/rcompt.R | 3 Compositional-2.3/Compositional/R/rda.R | 1 Compositional-2.3/Compositional/R/rda.tune.R | 10 - Compositional-2.3/Compositional/R/ridge.plot.R | 11 - Compositional-2.3/Compositional/R/ridge.reg.R | 3 Compositional-2.3/Compositional/R/ridge.tune.R | 18 -- Compositional-2.3/Compositional/R/spatmed.reg.R | 14 - Compositional-2.3/Compositional/R/sscov.R | 6 Compositional-2.3/Compositional/R/sym.test.R | 5 Compositional-2.3/Compositional/R/ternary.R | 1 Compositional-2.3/Compositional/man/Compositional-package.Rd | 4 Compositional-2.3/Compositional/man/alfadist.Rd | 22 +- 50 files changed, 147 insertions(+), 310 deletions(-)