Title: Censored Spatial Models
Description: Fits linear regression models for censored spatial data. Provides different estimation methods as the SAEM (Stochastic Approximation of Expectation Maximization) algorithm and seminaive that uses Kriging prediction to estimate the response at censored locations and predict new values at unknown locations. Also offers graphical tools for assessing the fitted model.
Author: Alejandro Ordonez, Christian E. Galarza, Victor H. Lachos
Maintainer: Alejandro Ordonez <ordonezjosealejandro@gmail.com>
Diff between CensSpatial versions 1.2 dated 2016-12-04 and 1.3 dated 2017-03-02
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++-------- R/SAEMSCLfin.R | 2 +- R/Seminaivefin.R | 21 +++++++++++---------- R/Seminaiveprin.R | 3 ++- R/algnaive12fin.R | 18 +++++++++--------- R/algnaive12prin.R | 3 ++- data/paranacens25.rda |only man/algnaive12.Rd | 15 ++++----------- man/paranacens25.Rd |only man/seminaive_1.Rd | 9 ++------- 11 files changed, 44 insertions(+), 51 deletions(-)
Title: AUC Maximization
Description: Implements methods for identifying linear and nonlinear marker combinations that maximizes the Area Under the AUC Curve (AUC).
Author: Youyi Fong <youyifong@gmail.com>, Krisztian Sebestyen <ksebestyen@gmail.com>, Shuxin Yin <yinshuxin05@gmail.com>, Ying Huang <yhuang124@gmail.com>
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between aucm versions 2016.1-2 dated 2016-01-02 and 2017.3-2 dated 2017-03-02
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++++------ NAMESPACE | 2 +- R/auc.R | 6 +++--- R/minQuad.R | 4 ++-- R/tuning.R |only inst/unitTests/runit.misc.R |only man/roc.Rd | 3 ++- man/sample.for.cv.Rd |only man/tune.it.Rd |only src/random.c | 9 ++++----- src/registerDynamicSymbol.c |only 12 files changed, 27 insertions(+), 22 deletions(-)
Title: Performs Regularization on Structural Equation Models
Description: Uses both ridge and lasso penalties (and extensions) to penalize
specific parameters in structural equation models. The package offers additional
cost functions, cross validation, and other extensions beyond traditional structural
equation models.
Author: Ross Jacobucci[aut,cre], Kevin J. Grimm [ctb]
Maintainer: Ross Jacobucci <rcjacobuc@gmail.com>
Diff between regsem versions 0.5.0 dated 2016-12-22 and 0.7.0 dated 2017-03-02
regsem-0.5.0/regsem/R/plot.R |only regsem-0.5.0/regsem/man/plot.regsem.Rd |only regsem-0.7.0/regsem/DESCRIPTION | 14 +- regsem-0.7.0/regsem/MD5 | 48 +++---- regsem-0.7.0/regsem/NAMESPACE | 3 regsem-0.7.0/regsem/R/RcppExports.R | 8 - regsem-0.7.0/regsem/R/coord_desc.R | 163 +++++++++++++----------- regsem-0.7.0/regsem/R/cv_regsem.R | 36 +++-- regsem-0.7.0/regsem/R/fit_indices.R | 30 +++- regsem-0.7.0/regsem/R/multi_optim.R | 27 +++ regsem-0.7.0/regsem/R/plot_cv.R |only regsem-0.7.0/regsem/R/regsem.R | 132 +++++++++++-------- regsem-0.7.0/regsem/R/soft.R | 63 ++++++--- regsem-0.7.0/regsem/R/summary.R | 1 regsem-0.7.0/regsem/man/cv_regsem.Rd | 36 ++--- regsem-0.7.0/regsem/man/extractMatrices.Rd | 1 regsem-0.7.0/regsem/man/fit_indices.Rd | 1 regsem-0.7.0/regsem/man/multi_optim.Rd | 25 ++- regsem-0.7.0/regsem/man/plot_cv.Rd |only regsem-0.7.0/regsem/man/rcpp_RAMmult.Rd | 1 regsem-0.7.0/regsem/man/rcpp_fit_fun.Rd | 7 - regsem-0.7.0/regsem/man/rcpp_grad_ram.Rd | 1 regsem-0.7.0/regsem/man/regsem.Rd | 28 ++-- regsem-0.7.0/regsem/man/summary.regsem.Rd | 1 regsem-0.7.0/regsem/src/RcppExports.cpp | 32 ++-- regsem-0.7.0/regsem/src/init.c |only regsem-0.7.0/regsem/src/registerDynamicSymbol.c |only regsem-0.7.0/regsem/src/regsem_rcpp_fit_fun.cpp | 40 +++++ 28 files changed, 443 insertions(+), 255 deletions(-)
Title: Clustering Mutations using High Throughput Sequencing (HTS) Data
Description: Using HTS data, clusters mutations in order to recreate putative
clones from the data provided. It requires genotype at the location of the
variant as well as the depth of coverage and number of reads supporting the
mutation. Additional information may be provided, such as the contamination
in the tumor sample. This package also provides a function QuantumCat() which
simulates data obtained from tumor sequencing.
Author: Paul Deveau [aut, cre]
Maintainer: Paul Deveau <paul.deveau@curie.fr>
Diff between QuantumClone versions 0.16.8.19 dated 2016-08-26 and 1.0.0.3 dated 2017-03-02
QuantumClone-0.16.8.19/QuantumClone/man/Multitest.Rd |only QuantumClone-0.16.8.19/QuantumClone/man/statistics_on_Multitest.Rd |only QuantumClone-1.0.0.3/QuantumClone/DESCRIPTION | 13 QuantumClone-1.0.0.3/QuantumClone/MD5 | 111 + QuantumClone-1.0.0.3/QuantumClone/NAMESPACE | 16 QuantumClone-1.0.0.3/QuantumClone/R/Cluster_selection.R |only QuantumClone-1.0.0.3/QuantumClone/R/EM.R | 676 ++++------ QuantumClone-1.0.0.3/QuantumClone/R/FlashQC.R |only QuantumClone-1.0.0.3/QuantumClone/R/QuantumCat.R | 305 ---- QuantumClone-1.0.0.3/QuantumClone/R/QuantumClone.R | 511 +++---- QuantumClone-1.0.0.3/QuantumClone/R/Tree_generation.R |only QuantumClone-1.0.0.3/QuantumClone/R/data.R | 2 QuantumClone-1.0.0.3/QuantumClone/R/descent.R |only QuantumClone-1.0.0.3/QuantumClone/R/plots.R | 13 QuantumClone-1.0.0.3/QuantumClone/R/validation_tools.R |only QuantumClone-1.0.0.3/QuantumClone/build/vignette.rds |binary QuantumClone-1.0.0.3/QuantumClone/inst/doc/Release.Rmd | 249 +++ QuantumClone-1.0.0.3/QuantumClone/inst/doc/Release.html | 480 +++++-- QuantumClone-1.0.0.3/QuantumClone/inst/doc/Use_case.R | 4 QuantumClone-1.0.0.3/QuantumClone/inst/doc/Use_case.Rmd | 17 QuantumClone-1.0.0.3/QuantumClone/inst/doc/Use_case.html | 19 QuantumClone-1.0.0.3/QuantumClone/man/BIC_criterion.Rd | 5 QuantumClone-1.0.0.3/QuantumClone/man/BIC_criterion_FLASH.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/Cellular_preclustering.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/Cluster_plot_from_cell.Rd | 9 QuantumClone-1.0.0.3/QuantumClone/man/Compute_NMI.Rd | 2 QuantumClone-1.0.0.3/QuantumClone/man/Compute_objective.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/Create_prior_cutTree.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/EM.algo.Rd | 3 QuantumClone-1.0.0.3/QuantumClone/man/EM_clustering.Rd | 12 QuantumClone-1.0.0.3/QuantumClone/man/FLASH_main.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/FlashQC.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/From_freq_to_cell.Rd | 3 QuantumClone-1.0.0.3/QuantumClone/man/FullEM.Rd | 5 QuantumClone-1.0.0.3/QuantumClone/man/MajorityVote.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/NMI_cutree.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/One_step_clustering.Rd | 27 QuantumClone-1.0.0.3/QuantumClone/man/Patient_schrodinger_cellularities.Rd | 3 QuantumClone-1.0.0.3/QuantumClone/man/Precision_Recall.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/ProbDistMatrix.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/Probability.to.belong.to.clone.Rd | 5 QuantumClone-1.0.0.3/QuantumClone/man/QuantumClone.Rd | 26 QuantumClone-1.0.0.3/QuantumClone/man/check_leaf.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/check_split.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/e.step.Rd | 4 QuantumClone-1.0.0.3/QuantumClone/man/eval.fik.m.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/evolution_plot.Rd | 1 QuantumClone-1.0.0.3/QuantumClone/man/filter_on_fik.Rd | 2 QuantumClone-1.0.0.3/QuantumClone/man/grbase.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/grzero.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/hard.clustering.Rd | 2 QuantumClone-1.0.0.3/QuantumClone/man/list_prod.Rd | 9 QuantumClone-1.0.0.3/QuantumClone/man/m.step.Rd | 6 QuantumClone-1.0.0.3/QuantumClone/man/parallelEM.Rd | 8 QuantumClone-1.0.0.3/QuantumClone/man/phylo_tree_generation.Rd | 9 QuantumClone-1.0.0.3/QuantumClone/man/update_probs.Rd |only QuantumClone-1.0.0.3/QuantumClone/man/zscore.Rd |only QuantumClone-1.0.0.3/QuantumClone/tests |only QuantumClone-1.0.0.3/QuantumClone/vignettes/Release.Rmd | 284 ++-- QuantumClone-1.0.0.3/QuantumClone/vignettes/Use_case.Rmd | 9 60 files changed, 1585 insertions(+), 1265 deletions(-)
Title: Recognize and Parse Dates in Various Formats, Including All ISO
8601 Formats
Description: Parse dates automatically, without the need of
specifying a format. Currently it includes the git date parser.
It can also recognize and parse all ISO 8601 formats.
Author: Gábor Csárdi, Linus Torvalds
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between parsedate versions 1.1.1 dated 2014-09-23 and 1.1.3 dated 2017-03-02
parsedate-1.1.1/parsedate/README.md |only parsedate-1.1.3/parsedate/DESCRIPTION | 14 ++-- parsedate-1.1.3/parsedate/MD5 | 29 +++++---- parsedate-1.1.3/parsedate/NAMESPACE | 4 - parsedate-1.1.3/parsedate/R/parsedate-package.r | 33 ++++++++--- parsedate-1.1.3/parsedate/inst |only parsedate-1.1.3/parsedate/man/format_iso_8601.Rd | 4 - parsedate-1.1.3/parsedate/man/parse_date.Rd | 8 ++ parsedate-1.1.3/parsedate/man/parse_iso_8601.Rd | 4 - parsedate-1.1.3/parsedate/man/parsedate-package.Rd | 6 +- parsedate-1.1.3/parsedate/src/date.c | 4 + parsedate-1.1.3/parsedate/src/rdate.c | 12 ++++ parsedate-1.1.3/parsedate/tests/testthat.R | 4 - parsedate-1.1.3/parsedate/tests/testthat/test-corner-cases.R |only parsedate-1.1.3/parsedate/tests/testthat/test-git.r | 2 parsedate-1.1.3/parsedate/tests/testthat/test-iso8601.r | 6 +- 16 files changed, 84 insertions(+), 46 deletions(-)
Title: Computerized Adaptive Testing with Multidimensional Item
Response Theory
Description: Provides tools to generate an HTML interface for creating adaptive
and non-adaptive educational and psychological tests using the shiny
package. Suitable for applying unidimensional and multidimensional
computerized adaptive tests (CAT) using item response theory methodology and for
creating simple questionnaires forms to collect response data directly in R.
Additionally, optimal test designs (e.g., "shadow testing") are supported
for tests which contain a large number of item selection constraints.
Finally, package contains tools useful for performing Monte Carlo simulations
for studying the behavior of computerized adaptive test banks.
Author: Phil Chalmers [aut, cre]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirtCAT versions 1.3 dated 2017-01-31 and 1.4 dated 2017-03-02
DESCRIPTION | 17 ++--- MD5 | 72 +++++++++++------------ NEWS.md | 48 ++++++++++----- R/DesignClass.R | 109 ++++++++++++++++++++++++++---------- R/PersonClass.R | 64 +++++++-------------- R/ShinyGUIClass.R | 6 - R/TestClass.R | 3 R/computeCriteria.R | 24 ++++++- R/findNextCATItem.R | 20 +++--- R/getPerson.R | 3 R/mirtCAT.R | 78 +++++++++++++++++-------- R/mirtCAT_preamble.R | 17 +++-- R/run_pattern.R | 9 +- R/selection_criteria.R | 5 + R/server.R | 25 +++++--- R/updateDesign.R | 5 - R/util.R | 6 - R/zzz-methods.R | 3 build/vignette.rds |binary man/computeCriteria.Rd | 26 ++++++-- man/createShinyGUI.Rd | 7 -- man/extract.mirtCAT.Rd | 8 +- man/findNextItem.Rd | 18 ++--- man/generate.mirt_object.Rd | 7 -- man/generate_pattern.Rd | 7 -- man/getPerson.Rd | 7 -- man/mirtCAT-package.Rd | 7 -- man/mirtCAT.Rd | 83 +++++++++++++++++---------- man/mirtCAT_preamble.Rd | 7 -- man/updateDesign.Rd | 12 +-- src/CAT_functions.cpp | 34 +++++++++++ src/item_functions.cpp | 6 + tests/GUI-tests/GUI-tests.R | 10 ++- tests/tests/test-mirtCAT_classify.R | 2 tests/tests/test-mirtCAT_extra.R | 6 - tests/tests/test-mirtCAT_multi.R | 7 ++ tests/tests/test-mirtCAT_ordered.R | 14 ++++ 37 files changed, 497 insertions(+), 285 deletions(-)
Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using
unidimensional and multidimensional latent trait models under the Item
Response Theory paradigm. Exploratory and confirmatory models can be
estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier analyses are available for modeling item testlets.
Multiple group analysis and mixed effects designs also are available for
detecting differential item and test functioning as well as modelling
item and person covariates. Finally, latent class models such as the DINA,
DINO, multidimensional latent class, and several other discrete latent
variable models are supported.
Author: Phil Chalmers [aut, cre, cph],
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb],
KwonHyun Kim [ctb],
Carl F. Falk [ctb],
Adam Meade [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirt versions 1.22 dated 2017-01-31 and 1.23 dated 2017-03-02
DESCRIPTION | 11 MD5 | 211 +++++++++--------- NEWS.md | 21 + R/02-item_methods.R | 11 R/03-estimation.R | 60 +++-- R/DIF.R | 2 R/DTF.R | 12 - R/EMstep.group.R | 2 R/EMstep.utils.R | 13 - R/M2.R | 3 R/MHRM.group.R | 465 +++++++++------------------------------- R/MHRM.utils.R |only R/MultipleGroup-methods.R | 2 R/PLCI.mirt.R | 5 R/SE.methods.R | 44 +-- R/SIBTEST.R | 12 - R/SingleGroup-methods.R | 23 + R/averageMI.R | 2 R/bfactor.R | 6 R/empirical_ES.R | 2 R/extract.group.R | 2 R/fixef.R | 2 R/fscores.internal.R | 23 + R/itemGAM.R | 2 R/itemfit.R | 6 R/iteminfo.R | 28 ++ R/itemplot.internal.R | 2 R/mirt.R | 68 +++-- R/mixedmirt.R | 6 R/multipleGroup.R | 6 R/personfit.R | 2 R/simdata.R | 17 - R/utils.R | 57 +++- man/Bock1997.Rd | 7 man/DIF.Rd | 9 man/DTF.Rd | 19 - man/DiscreteClass-class.Rd | 2 man/LSAT6.Rd | 7 man/LSAT7.Rd | 7 man/M2.Rd | 7 man/MDIFF.Rd | 7 man/MDISC.Rd | 7 man/MixedClass-class.Rd | 2 man/MultipleGroupClass-class.Rd | 2 man/PLCI.mirt.Rd | 12 - man/SAT12.Rd | 7 man/SIBTEST.Rd | 19 - man/Science.Rd | 1 man/SingleGroupClass-class.Rd | 2 man/anova-method.Rd | 26 +- man/areainfo.Rd | 1 man/averageMI.Rd | 9 man/bfactor.Rd | 13 - man/boot.LR.Rd | 1 man/boot.mirt.Rd | 1 man/coef-method.Rd | 9 man/createGroup.Rd | 1 man/createItem.Rd | 1 man/deAyala.Rd | 7 man/empirical_ES.Rd | 10 man/empirical_plot.Rd | 1 man/empirical_rxx.Rd | 7 man/expand.table.Rd | 1 man/expected.item.Rd | 7 man/expected.test.Rd | 1 man/extract.group.Rd | 9 man/extract.item.Rd | 1 man/extract.mirt.Rd | 7 man/fixef.Rd | 9 man/fscores.Rd | 7 man/imputeMissing.Rd | 1 man/itemGAM.Rd | 9 man/itemfit.Rd | 9 man/iteminfo.Rd | 26 +- man/itemplot.Rd | 1 man/key2binary.Rd | 1 man/lagrange.Rd | 7 man/logLik-method.Rd | 9 man/marginal_rxx.Rd | 7 man/mdirt.Rd | 8 man/mirt-package.Rd | 1 man/mirt.Rd | 76 +++--- man/mirt.model.Rd | 1 man/mirtCluster.Rd | 1 man/mixedmirt.Rd | 13 - man/mod2values.Rd | 7 man/multipleGroup.Rd | 13 - man/numerical_deriv.Rd | 1 man/personfit.Rd | 9 man/plot-method.Rd | 7 man/poly2dich.Rd | 1 man/print-method.Rd | 9 man/print.mirt_df.Rd | 1 man/print.mirt_list.Rd | 1 man/print.mirt_matrix.Rd | 1 man/probtrace.Rd | 7 man/randef.Rd | 1 man/residuals-method.Rd | 7 man/show-method.Rd | 9 man/simdata.Rd | 24 +- man/summary-method.Rd | 9 man/testinfo.Rd | 1 man/vcov-method.Rd | 9 man/wald.Rd | 1 src/Misc.cpp | 6 src/traceLinePts.cpp | 2 tests/tests/test-07-mixedmirt.R | 17 - 107 files changed, 775 insertions(+), 912 deletions(-)
Title: 'd3.js' Utilities for R
Description: Helper functions for using 'd3.js' in R.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Kent Russell [aut, cre] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between d3r versions 0.6.1 dated 2017-02-03 and 0.6.2 dated 2017-03-02
DESCRIPTION | 10 MD5 | 22 - NAMESPACE | 1 NEWS.md | 7 R/dependencies.R | 4 R/v8.R |only inst/examples/example_d3_v8.R |only inst/www/d3/v4/API.md | 25 - inst/www/d3/v4/CHANGES.md | 710 +++++++++++++++++++++--------------------- inst/www/d3/v4/README.md | 4 inst/www/d3/v4/dist/d3.min.js | 16 man/d3_v8.Rd |only tests/testthat/test_igraph.R | 23 - tests/testthat/test_v8.R |only 14 files changed, 419 insertions(+), 403 deletions(-)
Title: Prediction of G Quadruplexes and Other Non-B DNA Motifs
Description: Genomic biology is not limited to the confines of the canonical B-
forming DNA duplex, but includes over ten different types of other secondary
structures that are collectively termed non-B DNA structures. Of these non-B
DNA structures, the G-quadruplexes are highly stable four-stranded structures
that are recognized by distinct subsets of nuclear factors. This package
provide functions for predicting intramolecular G quadruplexes. In addition,
functions for predicting other intramolecular nonB DNA structures are included.
Author: Hannah O. Ajoge
Maintainer: Hannah O. Ajoge <ohuajo@gmail.com>
Diff between gquad versions 2.0-0 dated 2017-01-14 and 2.1-0 dated 2017-03-02
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/gquad.R | 4 ++-- R/gquadO.R | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: FLuctuation ANalysis on Mutation Models
Description: Tools for fluctuations analysis of mutant cells counts.
Author: Adrien Mazoyer [aut, cre],
Remy Drouilhet [aut],
Stephane Despreaux [aut],
Bernard Ycart [aut]
Maintainer: Adrien Mazoyer <Adrien.Mazoyer@univ-grenoble-alpes.fr>
Diff between flan versions 0.3 dated 2016-09-22 and 0.4 dated 2017-03-02
DESCRIPTION | 29 - MD5 | 36 - NAMESPACE | 8 R/flan.R | 1057 +++++++++++++++++++++++++-------------------- README |only man/draw.clone.Rd | 21 man/flan-package.Rd | 39 - man/flan.test.Rd | 58 +- man/mutestim.Rd | 47 +- man/rflan.Rd | 38 - src/FLAN_Clone.cpp | 263 ++++++----- src/FLAN_Clone.h | 124 +++-- src/FLAN_MutationModel.cpp | 326 ++++++++----- src/FLAN_MutationModel.h | 201 ++++---- src/FLAN_Sim.h | 24 - src/MATH_Function.cpp | 219 +++++++-- src/MATH_Function.h | 132 +++-- src/Makevars |only src/Makevars.win |only src/init.c |only src/rcpp_flan_module.cpp | 20 21 files changed, 1578 insertions(+), 1064 deletions(-)
Title: Ferguson-Klass Type Algorithm for Posterior Normalized Random
Measures
Description: Bayesian nonparametric density estimation modeling mixtures by a Ferguson-Klass type algorithm for posterior normalized random measures.
Author: Ernesto Barrios [aut, cre],
Antonio Lijoi [aut],
Luis E. Nieto-Barajas [aut],
Igor Prünster [aut],
Guillaume Kon Kam King [ctb]
Maintainer: Ernesto Barrios <ebarrios@itam.mx>
Diff between BNPdensity versions 2015.5 dated 2015-06-08 and 2017.03 dated 2017-03-02
DESCRIPTION | 29 ++ MD5 | 146 +++++++++++--- NAMESPACE | 4 R/MixNRMI1.R | 192 +++++++++++-------- R/MixNRMI1cens.R |only R/MixNRMI2.R | 202 +++++++++++--------- R/MixNRMI2cens.R |only R/Mv.R | 24 +- R/MvInv.R | 39 +--- R/cens_data_check.R |only R/censor_code_rl.R |only R/comp1.R | 48 ++-- R/comp2.R | 60 +++--- R/cpo.R | 14 - R/dhalfcauchy.R |only R/dhalfnorm.R |only R/dhalft.R |only R/dk.R | 105 ++++++---- R/dkcens2.R |only R/dkcens2_1val.R |only R/dt_.R |only R/dtnorm.R |only R/fcondXA.R | 22 +- R/fcondXA2.R | 22 +- R/fcondXA2cens2.R |only R/fcondYXA.R | 24 +- R/fcondYXAcens2.R |only R/fcondYZXA.R | 32 +-- R/fcondYZXAcens2.R |only R/gs3.R | 40 ++-- R/gs4.R | 40 ++-- R/gs4cens2.R |only R/gs5.R | 40 ++-- R/gs5cens2.R |only R/gsHP.R | 84 ++++---- R/gsYZstar.R | 86 ++++---- R/gsYZstarcens2.R |only R/p0.R | 62 +++--- R/phalfcauchy.R |only R/phalfnorm.R |only R/phalft.R |only R/pk.R |only R/pt_.R |only R/ptnorm.R |only R/qgeneric.R |only R/qhalfcauchy.R |only R/qhalfnorm.R |only R/qhalft.R |only R/qt_.R |only R/qtnorm.R |only R/rfystar.R | 28 +- R/rfystarcens2.R |only R/rfyzstar.R | 34 +-- R/rfyzstarcens2.R |only R/rhalfcauchy.R |only R/rhalfnorm.R |only R/rhalft.R |only R/rk.R | 105 ++++++---- R/rt_.R |only R/rtnorm.R |only data/Enzyme1.out.rda |binary data/Enzyme2.out.rda |binary data/Galaxy1.out.rda |binary data/Galaxy2.out.rda |binary data/acidity.rda |binary data/enzyme.rda |binary data/galaxy.rda |binary data/salinity.rda |only man/BNPdensity-package.Rd | 110 +++++------ man/MixNRMI1.Rd | 448 +++++++++++++++++++++++----------------------- man/MixNRMI1cens.Rd |only man/MixNRMI2.Rd | 424 ++++++++++++++++++++++--------------------- man/MixNRMI2cens.Rd |only man/acidity.Rd | 2 man/cens_data_check.Rd |only man/censor_code_rl.Rd |only man/dhalfcauchy.Rd |only man/dhalfnorm.Rd |only man/dhalft.Rd |only man/dkcens2.Rd |only man/dkcens2_1val.Rd |only man/dt_.Rd |only man/dtnorm.Rd |only man/enzyme.Rd | 2 man/fcondXA2cens2.Rd |only man/fcondYXAcens2.Rd |only man/fcondYZXAcens2.Rd |only man/galaxy.Rd | 2 man/gs4cens2.Rd |only man/gs5cens2.Rd |only man/gsYZstarcens2.Rd |only man/phalfcauchy.Rd |only man/phalfnorm.Rd |only man/phalft.Rd |only man/pk.Rd |only man/pt_.Rd |only man/ptnorm.Rd |only man/qgeneric.Rd |only man/qhalfcauchy.Rd |only man/qhalfnorm.Rd |only man/qhalft.Rd |only man/qt_.Rd |only man/qtnorm.Rd |only man/rfystarcens2.Rd |only man/rfyzstarcens2.Rd |only man/rhalfcauchy.Rd |only man/rhalfnorm.Rd |only man/rhalft.Rd |only man/rt_.Rd |only man/rtnorm.Rd |only man/salinity.Rd |only 111 files changed, 1333 insertions(+), 1137 deletions(-)
More information about AnnotationBustR at CRAN
Permanent link
Title: Building Diversity Models from Multiple Species Occupancy Models
Description: Predictions of alpha diversity are fitted from presence data, first abundance is modeled from occupancy models and then, several diversity indices are calculated and finally GLM models are used to predict diversity in different environments and select priority areas.
Author: Derek Corcoran [aut, cre],
Dylan Kesler [aut],
Lisa Webb [aut],
Giorgia Graells [aut],
Nicole Michel [ctb],
Mike Meredith [ctb]
Maintainer: Derek Corcoran <derek.corcoran.barrios@gmail.com>
Diff between DiversityOccupancy versions 1.0.5 dated 2016-06-19 and 1.0.6 dated 2017-03-02
DESCRIPTION | 14 ++++--- MD5 | 35 +++++++++--------- NAMESPACE | 2 + R/DiversityOccu.R | 85 ++++++++++++++++++++++++++++++++++++++++++++++ build/vignette.rds |binary inst/doc/my-vignette.html | 4 +- man/Birdstack.Rd | 1 man/Daily_Cov.Rd | 1 man/IslandBirds.Rd | 1 man/batchoccu.Rd | 7 +-- man/batchoccuavg.Rd |only man/diversity.predict.Rd | 7 +-- man/diversityoccu.Rd | 11 ++--- man/model.diversity.Rd | 7 +-- man/occupancy.predict.Rd | 7 +-- man/responseplot.abund.Rd | 7 +-- man/responseplot.diver.Rd | 7 +-- man/responseplot.occu.Rd | 7 +-- man/siteCov.Rd | 1 19 files changed, 141 insertions(+), 63 deletions(-)
More information about DiversityOccupancy at CRAN
Permanent link
Title: Binary Choice Models with Fixed Effects
Description: Estimates fixed effects binary choice models (logit and probit) with potentially many individual fixed effects and computes average partial effects. Incidental parameter bias can be reduced with a bias-correction proposed by Hahn and Newey (2004) <doi:10.1111/j.1468-0262.2004.00533.x>.
Author: Amrei Stammann [aut, cre],
Daniel Czarnowske [aut],
Florian Heiss [aut],
Daniel McFadden [ctb]
Maintainer: Amrei Stammann <amrei.stammann@hhu.de>
Diff between bife versions 0.1 dated 2016-07-29 and 0.2 dated 2017-03-02
bife-0.1/bife/R/apeff.bife.R |only bife-0.1/bife/R/coef.bife.R |only bife-0.1/bife/R/print.bife.R |only bife-0.1/bife/R/print.summary.bife.R |only bife-0.1/bife/R/results.acs.R |only bife-0.1/bife/R/results.psid.R |only bife-0.1/bife/R/summary.bife.R |only bife-0.1/bife/R/time.n.R |only bife-0.1/bife/R/time.t.R |only bife-0.1/bife/R/vcov.bife.R |only bife-0.1/bife/data/results.acs.rda |only bife-0.1/bife/data/results.psid.rda |only bife-0.1/bife/data/time.n.rda |only bife-0.1/bife/data/time.t.rda |only bife-0.1/bife/man/apeff.bife.Rd |only bife-0.1/bife/man/results.acs.Rd |only bife-0.1/bife/man/results.psid.Rd |only bife-0.1/bife/man/time.n.Rd |only bife-0.1/bife/man/time.t.Rd |only bife-0.1/bife/src/apeff.cpp |only bife-0.1/bife/src/biascorr_apeff.cpp |only bife-0.1/bife/src/biascorr_apeff.h |only bife-0.1/bife/src/biascorr_beta.cpp |only bife-0.1/bife/src/biascorr_beta.h |only bife-0.1/bife/src/demeaning.cpp |only bife-0.1/bife/src/demeaning.h |only bife-0.1/bife/src/iwls.cpp |only bife-0.1/bife/src/iwls.h |only bife-0.1/bife/src/link.cpp |only bife-0.1/bife/src/link.h |only bife-0.1/bife/src/offset.cpp |only bife-0.1/bife/src/offset.h |only bife-0.1/bife/src/stderr.cpp |only bife-0.1/bife/src/stderr.h |only bife-0.2/bife/DESCRIPTION | 19 bife-0.2/bife/MD5 | 110 +- bife-0.2/bife/NAMESPACE | 40 bife-0.2/bife/R/RcppExports.R | 30 bife-0.2/bife/R/acs.R | 48 - bife-0.2/bife/R/apeff_bife.R |only bife-0.2/bife/R/bife.R | 493 +++++------- bife-0.2/bife/R/coef_bife.R |only bife-0.2/bife/R/fixed.R |only bife-0.2/bife/R/print_bife.R |only bife-0.2/bife/R/print_summary_bife.R |only bife-0.2/bife/R/psid.R | 47 - bife-0.2/bife/R/results_acs.R |only bife-0.2/bife/R/results_psid.R |only bife-0.2/bife/R/summary_bife.R |only bife-0.2/bife/R/time_n.R |only bife-0.2/bife/R/time_t.R |only bife-0.2/bife/R/unload.R | 6 bife-0.2/bife/R/vcov_bife.R |only bife-0.2/bife/build/partial.rdb |binary bife-0.2/bife/build/vignette.rds |binary bife-0.2/bife/data/datalist | 12 bife-0.2/bife/data/psid.rda |binary bife-0.2/bife/data/results_acs.rda |only bife-0.2/bife/data/results_psid.rda |only bife-0.2/bife/data/time_n.rda |only bife-0.2/bife/data/time_t.rda |only bife-0.2/bife/inst/doc/bife_introduction.R | 270 +++--- bife-0.2/bife/inst/doc/bife_introduction.Rmd | 526 ++++++------ bife-0.2/bife/inst/doc/bife_introduction.html | 1054 ++++++++++++------------- bife-0.2/bife/man/acs.Rd | 63 - bife-0.2/bife/man/apeff_bife.Rd |only bife-0.2/bife/man/bife-package.Rd | 48 - bife-0.2/bife/man/bife.Rd | 322 +++---- bife-0.2/bife/man/coef.bife.Rd | 65 - bife-0.2/bife/man/fixed.Rd |only bife-0.2/bife/man/print.bife.Rd | 53 - bife-0.2/bife/man/print.summary.bife.Rd | 53 - bife-0.2/bife/man/psid.Rd | 62 - bife-0.2/bife/man/results_acs.Rd |only bife-0.2/bife/man/results_psid.Rd |only bife-0.2/bife/man/summary.bife.Rd | 71 - bife-0.2/bife/man/time_n.Rd |only bife-0.2/bife/man/time_t.Rd |only bife-0.2/bife/man/vcov.bife.Rd | 63 - bife-0.2/bife/src/RcppExports.cpp | 43 - bife-0.2/bife/src/bife.cpp | 1063 ++++++++++++++++++++------ bife-0.2/bife/src/registration.c |only bife-0.2/bife/vignettes/bife_introduction.Rmd | 526 ++++++------ bife-0.2/bife/vignettes/refs.bib | 108 +- 84 files changed, 2898 insertions(+), 2297 deletions(-)
Title: Text Mining Package
Description: A framework for text mining applications within R.
Author: Ingo Feinerer [aut, cre],
Kurt Hornik [aut],
Artifex Software, Inc. [ctb, cph] (pdf_info.ps taken from GPL
Ghostscript)
Maintainer: Ingo Feinerer <feinerer@logic.at>
Diff between tm versions 0.7 dated 2017-02-27 and 0.7-1 dated 2017-03-02
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- inst/NEWS.Rd | 7 +++++++ inst/doc/extensions.pdf |binary inst/doc/tm.pdf |binary src/tdm.cpp | 3 ++- 6 files changed, 18 insertions(+), 10 deletions(-)
Title: Supplementary Item Response Theory Models
Description:
Supplementary item response theory models to complement existing
functions in R, including multidimensional compensatory and
noncompensatory IRT models, MCMC for hierarchical IRT models and
testlet models, NOHARM, Rasch copula model, faceted and
hierarchical rater models, ordinal IRT model (ISOP),
DETECT statistic, local structural equation modeling (LSEM),
mean and covariance structure modelling for multivariate normally
distributed data.
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between sirt versions 1.14-0 dated 2017-01-11 and 1.15-41 dated 2017-03-02
sirt-1.14-0/sirt/R/CallSwitch.R |only sirt-1.14-0/sirt/R/lsem.helper.R |only sirt-1.14-0/sirt/man/CallSwitch.Rd |only sirt-1.14-0/sirt/src/evm_eigaux_fcts.h |only sirt-1.14-0/sirt/src/evm_eigenvals2.h |only sirt-1.15-41/sirt/DESCRIPTION | 18 sirt-1.15-41/sirt/MD5 | 826 ++-- sirt-1.15-41/sirt/NAMESPACE | 2 sirt-1.15-41/sirt/R/IRT.expectedCounts_sirt.R | 2 sirt-1.15-41/sirt/R/IRT.factor.scores.sirt.R | 2 sirt-1.15-41/sirt/R/IRT.factor.scores.xxirt.R | 2 sirt-1.15-41/sirt/R/IRT.likelihood_sirt.R | 2 sirt-1.15-41/sirt/R/IRT.mle.R | 2 sirt-1.15-41/sirt/R/IRT.modelfit.sirt.R | 2 sirt-1.15-41/sirt/R/IRT.posterior_sirt.R | 2 sirt-1.15-41/sirt/R/Q3.R | 48 sirt-1.15-41/sirt/R/Q3.testlet.R | 50 sirt-1.15-41/sirt/R/R2conquest.R | 16 sirt-1.15-41/sirt/R/RcppExports.R |only sirt-1.15-41/sirt/R/Rhat_sirt.R | 2 sirt-1.15-41/sirt/R/amh.R | 74 sirt-1.15-41/sirt/R/amh_compare_estimators.R | 16 sirt-1.15-41/sirt/R/amh_eval_prior.R | 10 sirt-1.15-41/sirt/R/amh_ic.R | 16 sirt-1.15-41/sirt/R/amh_loglike.R | 6 sirt-1.15-41/sirt/R/amh_posterior.R | 6 sirt-1.15-41/sirt/R/amh_proposal_refresh.R | 12 sirt-1.15-41/sirt/R/amh_sampling.R | 22 sirt-1.15-41/sirt/R/anova_sirt.R | 14 sirt-1.15-41/sirt/R/attach.environment.sirt.R | 6 sirt-1.15-41/sirt/R/automatic.recode.R | 10 sirt-1.15-41/sirt/R/bounds_parameters.R | 12 sirt-1.15-41/sirt/R/brm.irf.R | 4 sirt-1.15-41/sirt/R/brm.sim.R | 2 sirt-1.15-41/sirt/R/btm.R | 132 sirt-1.15-41/sirt/R/btm_fit.R | 30 sirt-1.15-41/sirt/R/categorize.R | 38 sirt-1.15-41/sirt/R/ccov.np.R | 2 sirt-1.15-41/sirt/R/coef.amh.R | 2 sirt-1.15-41/sirt/R/coef.mlnormal.R | 2 sirt-1.15-41/sirt/R/coef.pmle.R | 2 sirt-1.15-41/sirt/R/conf.detect.R | 2 sirt-1.15-41/sirt/R/confint.amh.R | 2 sirt-1.15-41/sirt/R/confint.mlnormal.R | 2 sirt-1.15-41/sirt/R/confint.pmle.R | 2 sirt-1.15-41/sirt/R/confint.xxirt.R | 2 sirt-1.15-41/sirt/R/data.prep.R | 2 sirt-1.15-41/sirt/R/data.wide2long.R | 4 sirt-1.15-41/sirt/R/decategorize.R | 12 sirt-1.15-41/sirt/R/detect.index.R | 20 sirt-1.15-41/sirt/R/diag2.R | 8 sirt-1.15-41/sirt/R/dimproper.R | 8 sirt-1.15-41/sirt/R/dirichlet.R | 6 sirt-1.15-41/sirt/R/eigenvalues.manymatrices.R | 2 sirt-1.15-41/sirt/R/eigenvalues.sirt.R | 4 sirt-1.15-41/sirt/R/expl.detect.R | 4 sirt-1.15-41/sirt/R/f1d.irt.R | 2 sirt-1.15-41/sirt/R/fit.adisop.R | 4 sirt-1.15-41/sirt/R/fit.gradedresponse.R | 2 sirt-1.15-41/sirt/R/fit.gradedresponse_alg.R | 2 sirt-1.15-41/sirt/R/fit.isop.R | 2 sirt-1.15-41/sirt/R/fit.logistic.R | 2 sirt-1.15-41/sirt/R/fit.logistic_alg.R | 2 sirt-1.15-41/sirt/R/fuzcluster.R | 2 sirt-1.15-41/sirt/R/fuzcluster_alg.R | 2 sirt-1.15-41/sirt/R/ginverse_sym.R | 8 sirt-1.15-41/sirt/R/gom.em.R | 4 sirt-1.15-41/sirt/R/gom.em.alg.R | 10 sirt-1.15-41/sirt/R/greenyang.reliability.R | 2 sirt-1.15-41/sirt/R/hard_thresholding.R | 6 sirt-1.15-41/sirt/R/invariance.alignment2.R | 2 sirt-1.15-41/sirt/R/invariance.alignment2.aux.R | 12 sirt-1.15-41/sirt/R/invgamma2.R | 2 sirt-1.15-41/sirt/R/isop.dich.R | 2 sirt-1.15-41/sirt/R/isop.poly.R | 2 sirt-1.15-41/sirt/R/isop.test.R | 11 sirt-1.15-41/sirt/R/lavaan2mirt.R | 2 sirt-1.15-41/sirt/R/lavaanify.sirt.R | 2 sirt-1.15-41/sirt/R/lc.2raters.aux.R | 2 sirt-1.15-41/sirt/R/likelihood_adjustment.R | 2 sirt-1.15-41/sirt/R/likelihood_adjustment_aux.R | 2 sirt-1.15-41/sirt/R/likelihood_moments.R | 2 sirt-1.15-41/sirt/R/linking.haberman.R | 46 sirt-1.15-41/sirt/R/linking.robust.R | 2 sirt-1.15-41/sirt/R/linking_haberman_als.R | 42 sirt-1.15-41/sirt/R/linking_haberman_als_residual_weights.R | 10 sirt-1.15-41/sirt/R/linking_haberman_als_vcov.R | 12 sirt-1.15-41/sirt/R/linking_haberman_vcov_transformation.R | 6 sirt-1.15-41/sirt/R/logLik_sirt.R | 2 sirt-1.15-41/sirt/R/loglike_mvnorm.R | 6 sirt-1.15-41/sirt/R/lsem.MGM.stepfunctions.R | 39 sirt-1.15-41/sirt/R/lsem.estimate.R | 71 sirt-1.15-41/sirt/R/lsem.fitsem.R | 46 sirt-1.15-41/sirt/R/lsem.group.moderator.R | 46 sirt-1.15-41/sirt/R/lsem.parameter.summary.R | 30 sirt-1.15-41/sirt/R/lsem.permutationTest.R | 180 sirt-1.15-41/sirt/R/lsem.residualize.R | 76 sirt-1.15-41/sirt/R/lsem_wtdSD.R |only sirt-1.15-41/sirt/R/matrixfunctions_sirt.R | 15 sirt-1.15-41/sirt/R/mcmc.2pno.R | 2 sirt-1.15-41/sirt/R/mcmc.2pno.ml.R | 2 sirt-1.15-41/sirt/R/mcmc.2pno.ml_alg.R | 2 sirt-1.15-41/sirt/R/mcmc.2pno.ml_output.R | 2 sirt-1.15-41/sirt/R/mcmc.2pno_alg.R | 2 sirt-1.15-41/sirt/R/mcmc.2pnoh.R | 2 sirt-1.15-41/sirt/R/mcmc.2pnoh_alg.R | 2 sirt-1.15-41/sirt/R/mcmc.3pno.testlet.R | 2 sirt-1.15-41/sirt/R/mcmc.3pno.testlet_alg.R | 2 sirt-1.15-41/sirt/R/mcmc.3pno.testlet_output.R | 2 sirt-1.15-41/sirt/R/mcmc.aux.R | 2 sirt-1.15-41/sirt/R/mcmc.list.descriptives.R | 2 sirt-1.15-41/sirt/R/mcmc_Rhat.R | 16 sirt-1.15-41/sirt/R/mcmc_WaldTest.R | 42 sirt-1.15-41/sirt/R/mcmc_coef.R | 6 sirt-1.15-41/sirt/R/mcmc_confint.R | 16 sirt-1.15-41/sirt/R/mcmc_derivedPars.R | 8 sirt-1.15-41/sirt/R/mcmc_plot.R | 4 sirt-1.15-41/sirt/R/mcmc_summary.R | 44 sirt-1.15-41/sirt/R/mcmc_vcov.R | 8 sirt-1.15-41/sirt/R/mcmclist2coda.R | 18 sirt-1.15-41/sirt/R/md.pattern.sirt.R | 20 sirt-1.15-41/sirt/R/mirt.IRT.functions.R | 2 sirt-1.15-41/sirt/R/mirt.model.vars.R | 2 sirt-1.15-41/sirt/R/mirt.wrapper.calc.counts.R | 2 sirt-1.15-41/sirt/R/mirt.wrapper.coef.R | 2 sirt-1.15-41/sirt/R/mirt.wrapper.fscores.R | 2 sirt-1.15-41/sirt/R/mirt.wrapper.itemplot.R | 2 sirt-1.15-41/sirt/R/mle.pcm.group.R | 14 sirt-1.15-41/sirt/R/mle.reliability.R | 2 sirt-1.15-41/sirt/R/mlnormal.R | 26 sirt-1.15-41/sirt/R/mlnormalCheckMatrixListDifference.R | 8 sirt-1.15-41/sirt/R/mlnormalMatrix2List.R | 10 sirt-1.15-41/sirt/R/mlnormal_abs_approx.R | 10 sirt-1.15-41/sirt/R/mlnormal_adjust_numdiff_parameter.R | 8 sirt-1.15-41/sirt/R/mlnormal_as_vector_names.R | 8 sirt-1.15-41/sirt/R/mlnormal_covmat_add_ridge.R | 6 sirt-1.15-41/sirt/R/mlnormal_create_disp.R | 8 sirt-1.15-41/sirt/R/mlnormal_equal_list_matrices.R | 8 sirt-1.15-41/sirt/R/mlnormal_equal_matrix.R | 10 sirt-1.15-41/sirt/R/mlnormal_eval_penalty.R | 12 sirt-1.15-41/sirt/R/mlnormal_eval_penalty_update_theta.R | 14 sirt-1.15-41/sirt/R/mlnormal_eval_priors.R | 14 sirt-1.15-41/sirt/R/mlnormal_eval_priors_derivative.R | 4 sirt-1.15-41/sirt/R/mlnormal_eval_priors_derivative2.R | 8 sirt-1.15-41/sirt/R/mlnormal_fill_matrix_from_list.R | 4 sirt-1.15-41/sirt/R/mlnormal_fit_function_ml.R | 10 sirt-1.15-41/sirt/R/mlnormal_ic.R | 10 sirt-1.15-41/sirt/R/mlnormal_information_matrix_reml.R | 26 sirt-1.15-41/sirt/R/mlnormal_linear_regression_bayes.R | 6 sirt-1.15-41/sirt/R/mlnormal_log_2pi.R | 4 sirt-1.15-41/sirt/R/mlnormal_log_det.R | 4 sirt-1.15-41/sirt/R/mlnormal_parameter_change.R | 6 sirt-1.15-41/sirt/R/mlnormal_postproc_eval_posterior.R | 8 sirt-1.15-41/sirt/R/mlnormal_postproc_parameters.R | 36 sirt-1.15-41/sirt/R/mlnormal_proc.R | 56 sirt-1.15-41/sirt/R/mlnormal_proc_control.R | 6 sirt-1.15-41/sirt/R/mlnormal_proc_variance_shortcut.R | 34 sirt-1.15-41/sirt/R/mlnormal_proc_variance_shortcut_XY_R.R | 8 sirt-1.15-41/sirt/R/mlnormal_proc_variance_shortcut_XY_Rcpp.R | 12 sirt-1.15-41/sirt/R/mlnormal_proc_variance_shortcut_Z_R.R | 8 sirt-1.15-41/sirt/R/mlnormal_proc_variance_shortcut_Z_Rcpp.R | 34 sirt-1.15-41/sirt/R/mlnormal_process_prior.R | 28 sirt-1.15-41/sirt/R/mlnormal_sqrt_diag.R | 6 sirt-1.15-41/sirt/R/mlnormal_update_V_R.R | 14 sirt-1.15-41/sirt/R/mlnormal_update_V_Rcpp.R | 16 sirt-1.15-41/sirt/R/mlnormal_update_beta.R | 10 sirt-1.15-41/sirt/R/mlnormal_update_beta_GLS.R | 6 sirt-1.15-41/sirt/R/mlnormal_update_beta_XVX_R.R | 14 sirt-1.15-41/sirt/R/mlnormal_update_beta_XVX_Rcpp.R | 9 sirt-1.15-41/sirt/R/mlnormal_update_beta_iterations_penalty.R | 16 sirt-1.15-41/sirt/R/mlnormal_update_beta_iterations_priors.R | 14 sirt-1.15-41/sirt/R/mlnormal_update_control_list.R | 10 sirt-1.15-41/sirt/R/mlnormal_update_ml_derivative_V.R | 14 sirt-1.15-41/sirt/R/mlnormal_update_theta_ml.R | 40 sirt-1.15-41/sirt/R/mlnormal_update_theta_newton_step.R | 10 sirt-1.15-41/sirt/R/mlnormal_verbose_f0.R | 8 sirt-1.15-41/sirt/R/mlnormal_verbose_f1.R | 8 sirt-1.15-41/sirt/R/mlnormal_verbose_f2.R | 16 sirt-1.15-41/sirt/R/modelfit.cor.R | 2 sirt-1.15-41/sirt/R/modelfit.cor.poly.R | 2 sirt-1.15-41/sirt/R/monoreg.rowwise.R | 6 sirt-1.15-41/sirt/R/nedelsky.latresp.R | 4 sirt-1.15-41/sirt/R/noharm.sirt.R | 15 sirt-1.15-41/sirt/R/noharm.sirt.preprocess.R | 2 sirt-1.15-41/sirt/R/np.dich.R | 2 sirt-1.15-41/sirt/R/nr.numdiff.R | 2 sirt-1.15-41/sirt/R/package_version_date.R |only sirt-1.15-41/sirt/R/parmsummary_extend.R | 12 sirt-1.15-41/sirt/R/pcm.fit.R | 2 sirt-1.15-41/sirt/R/plot.amh.R | 4 sirt-1.15-41/sirt/R/plot.invariance.alignment.R | 2 sirt-1.15-41/sirt/R/plot.isop.R | 2 sirt-1.15-41/sirt/R/plot.lsem.R | 2 sirt-1.15-41/sirt/R/plot.lsem.permutationTest.R | 2 sirt-1.15-41/sirt/R/plot.mcmc.sirt.R | 4 sirt-1.15-41/sirt/R/plot.rasch.mml.R | 2 sirt-1.15-41/sirt/R/pmle.R | 36 sirt-1.15-41/sirt/R/pmle_data_proc.R | 16 sirt-1.15-41/sirt/R/pmle_eval_posterior.R | 12 sirt-1.15-41/sirt/R/pmle_ic.R | 12 sirt-1.15-41/sirt/R/pmle_process_prior.R | 24 sirt-1.15-41/sirt/R/polychoric2.R | 4 sirt-1.15-41/sirt/R/pow.R | 4 sirt-1.15-41/sirt/R/print.xxirt.R | 2 sirt-1.15-41/sirt/R/prior_extract_density.R | 26 sirt-1.15-41/sirt/R/prior_model_pars_CleanString.R | 12 sirt-1.15-41/sirt/R/prior_model_parse.R | 34 sirt-1.15-41/sirt/R/rasch.conquest.R | 4 sirt-1.15-41/sirt/R/rasch.copula2_aux.R | 4 sirt-1.15-41/sirt/R/rasch.copula3.covariance.R | 2 sirt-1.15-41/sirt/R/rasch.evm.pcm.R | 16 sirt-1.15-41/sirt/R/rasch.evm.pcm.methods.R | 2 sirt-1.15-41/sirt/R/rasch.evm.pcm_aux.R | 2 sirt-1.15-41/sirt/R/rasch.jml.R | 2 sirt-1.15-41/sirt/R/rasch.mirtlc_aux.R | 2 sirt-1.15-41/sirt/R/rasch.mml.raschtype.R | 13 sirt-1.15-41/sirt/R/rasch.mml2.missing1.R | 10 sirt-1.15-41/sirt/R/rasch.pml2.R | 4 sirt-1.15-41/sirt/R/rasch.pml2_aux.R | 2 sirt-1.15-41/sirt/R/rasch.pml3_aux.R | 2 sirt-1.15-41/sirt/R/rasch.va.R | 4 sirt-1.15-41/sirt/R/read.fwf2.R | 10 sirt-1.15-41/sirt/R/rm.facets_IC.R | 2 sirt-1.15-41/sirt/R/rm.facets_PP.R | 2 sirt-1.15-41/sirt/R/rm.facets_alg.R | 9 sirt-1.15-41/sirt/R/rm.sdt_alg.R | 6 sirt-1.15-41/sirt/R/rm.smooth.distribution.R | 2 sirt-1.15-41/sirt/R/rm_proc.R | 2 sirt-1.15-41/sirt/R/sia.sirt.R | 2 sirt-1.15-41/sirt/R/sim.rasch.dep.R | 2 sirt-1.15-41/sirt/R/sim.raschtype.R | 3 sirt-1.15-41/sirt/R/sirtcat.R | 2 sirt-1.15-41/sirt/R/smirt.R | 2 sirt-1.15-41/sirt/R/smirt_alg_comp.R | 4 sirt-1.15-41/sirt/R/smirt_alg_noncomp.R | 15 sirt-1.15-41/sirt/R/smirt_alg_partcomp.R | 6 sirt-1.15-41/sirt/R/smirt_postproc.R | 2 sirt-1.15-41/sirt/R/smirt_preproc.R | 2 sirt-1.15-41/sirt/R/smirt_squeeze.R | 21 sirt-1.15-41/sirt/R/soft_thresholding.R | 8 sirt-1.15-41/sirt/R/starts_cov.R | 8 sirt-1.15-41/sirt/R/starts_sim1dim.R | 16 sirt-1.15-41/sirt/R/summary.amh.R | 4 sirt-1.15-41/sirt/R/summary.conf.detect.R | 2 sirt-1.15-41/sirt/R/summary.latent.regression.R | 2 sirt-1.15-41/sirt/R/summary.linking.haberman.R | 4 sirt-1.15-41/sirt/R/summary.lsem.R | 17 sirt-1.15-41/sirt/R/summary.lsem.permutationTest.R | 12 sirt-1.15-41/sirt/R/summary.mlnormal.R | 76 sirt-1.15-41/sirt/R/summary.pmle.R | 4 sirt-1.15-41/sirt/R/summary.xxirt.R | 2 sirt-1.15-41/sirt/R/summary_round_helper.R | 18 sirt-1.15-41/sirt/R/tam2mirt.R | 2 sirt-1.15-41/sirt/R/tam2mirt.aux.R | 2 sirt-1.15-41/sirt/R/testlet.yen.q3.R | 4 sirt-1.15-41/sirt/R/tetrachoric2.R | 10 sirt-1.15-41/sirt/R/tracemat.R | 6 sirt-1.15-41/sirt/R/truescore.irt.R | 2 sirt-1.15-41/sirt/R/unidim.csn.R | 9 sirt-1.15-41/sirt/R/vcov.amh.R | 2 sirt-1.15-41/sirt/R/vcov.mlnormal.R | 2 sirt-1.15-41/sirt/R/vcov.pmle.R | 2 sirt-1.15-41/sirt/R/weighted_colMeans.R | 8 sirt-1.15-41/sirt/R/weighted_colSums.R | 6 sirt-1.15-41/sirt/R/weighted_rowMeans.R | 8 sirt-1.15-41/sirt/R/weighted_rowSums.R | 6 sirt-1.15-41/sirt/R/weighted_stats_extend_wgt.R | 16 sirt-1.15-41/sirt/R/write.format2.R | 2 sirt-1.15-41/sirt/R/write.fwf2.R | 4 sirt-1.15-41/sirt/R/xxirt.R | 47 sirt-1.15-41/sirt/R/xxirt_EAP.R | 14 sirt-1.15-41/sirt/R/xxirt_IRT.se.R | 12 sirt-1.15-41/sirt/R/xxirt_ThetaDistribution_extract_freeParameters.R | 6 sirt-1.15-41/sirt/R/xxirt_coef.R | 6 sirt-1.15-41/sirt/R/xxirt_compute_itemprobs.R | 20 sirt-1.15-41/sirt/R/xxirt_compute_likelihood.R | 10 sirt-1.15-41/sirt/R/xxirt_compute_posterior.R | 26 sirt-1.15-41/sirt/R/xxirt_compute_priorDistribution.R | 8 sirt-1.15-41/sirt/R/xxirt_createDiscItem.R | 8 sirt-1.15-41/sirt/R/xxirt_createItemList.R | 14 sirt-1.15-41/sirt/R/xxirt_createParTable.R | 46 sirt-1.15-41/sirt/R/xxirt_createThetaDistribution.R | 10 sirt-1.15-41/sirt/R/xxirt_data_proc.R | 38 sirt-1.15-41/sirt/R/xxirt_hessian.R | 16 sirt-1.15-41/sirt/R/xxirt_ic.R | 12 sirt-1.15-41/sirt/R/xxirt_modifyParTable.R | 26 sirt-1.15-41/sirt/R/xxirt_mstep_ThetaParameters.R | 32 sirt-1.15-41/sirt/R/xxirt_mstep_itemParameters.R | 30 sirt-1.15-41/sirt/R/xxirt_mstep_itemParameters_evalPrior.R | 18 sirt-1.15-41/sirt/R/xxirt_parTheta_extract_freeParameters.R | 6 sirt-1.15-41/sirt/R/xxirt_partable_extract_freeParameters.R | 10 sirt-1.15-41/sirt/R/xxirt_partable_include_freeParameters.R | 6 sirt-1.15-41/sirt/R/xxirt_postproc_parameters.R | 32 sirt-1.15-41/sirt/R/xxirt_proc_ParTable.R | 52 sirt-1.15-41/sirt/R/xxirt_vcov.R | 4 sirt-1.15-41/sirt/R/yen.q3.R | 4 sirt-1.15-41/sirt/R/zzz.R | 12 sirt-1.15-41/sirt/inst/CITATION | 10 sirt-1.15-41/sirt/inst/NEWS | 1820 +++++----- sirt-1.15-41/sirt/man/IRT.mle.Rd | 22 sirt-1.15-41/sirt/man/Q3.Rd | 8 sirt-1.15-41/sirt/man/Q3.testlet.Rd | 8 sirt-1.15-41/sirt/man/R2conquest.Rd | 24 sirt-1.15-41/sirt/man/R2noharm.Rd | 38 sirt-1.15-41/sirt/man/amh.Rd | 8 sirt-1.15-41/sirt/man/automatic.recode.Rd | 4 sirt-1.15-41/sirt/man/brm.sim.Rd | 10 sirt-1.15-41/sirt/man/btm.Rd | 14 sirt-1.15-41/sirt/man/categorize.Rd | 6 sirt-1.15-41/sirt/man/class.accuracy.rasch.Rd | 2 sirt-1.15-41/sirt/man/conf.detect.Rd | 28 sirt-1.15-41/sirt/man/data.eid.Rd | 4 sirt-1.15-41/sirt/man/data.long.Rd | 8 sirt-1.15-41/sirt/man/data.mcdonald.Rd | 14 sirt-1.15-41/sirt/man/data.read.Rd | 53 sirt-1.15-41/sirt/man/data.si.Rd | 2 sirt-1.15-41/sirt/man/data.wide2long.Rd | 4 sirt-1.15-41/sirt/man/dif.logistic.regression.Rd | 18 sirt-1.15-41/sirt/man/dirichlet.mle.Rd | 8 sirt-1.15-41/sirt/man/dirichlet.simul.Rd | 8 sirt-1.15-41/sirt/man/eigenvalues.manymatrices.Rd | 2 sirt-1.15-41/sirt/man/equating.rasch.Rd | 2 sirt-1.15-41/sirt/man/equating.rasch.jackknife.Rd | 5 sirt-1.15-41/sirt/man/f1d.irt.Rd | 10 sirt-1.15-41/sirt/man/fit.isop.Rd | 4 sirt-1.15-41/sirt/man/fuzcluster.Rd | 6 sirt-1.15-41/sirt/man/fuzdiscr.Rd | 8 sirt-1.15-41/sirt/man/gom.em.Rd | 20 sirt-1.15-41/sirt/man/gom.jml.Rd | 4 sirt-1.15-41/sirt/man/greenyang.reliability.Rd | 2 sirt-1.15-41/sirt/man/invariance.alignment.Rd | 42 sirt-1.15-41/sirt/man/isop.Rd | 8 sirt-1.15-41/sirt/man/isop.scoring.Rd | 6 sirt-1.15-41/sirt/man/isop.test.Rd | 2 sirt-1.15-41/sirt/man/latent.regression.em.raschtype.Rd | 22 sirt-1.15-41/sirt/man/lavaan2mirt.Rd | 24 sirt-1.15-41/sirt/man/lc.2raters.Rd | 6 sirt-1.15-41/sirt/man/likelihood.adjustment.Rd | 4 sirt-1.15-41/sirt/man/linking.haberman.Rd | 54 sirt-1.15-41/sirt/man/linking.robust.Rd | 6 sirt-1.15-41/sirt/man/loglike_mvnorm.Rd | 4 sirt-1.15-41/sirt/man/lsdm.Rd | 22 sirt-1.15-41/sirt/man/lsem.estimate.Rd | 29 sirt-1.15-41/sirt/man/marginal.truescore.reliability.Rd | 6 sirt-1.15-41/sirt/man/matrixfunctions.sirt.Rd | 2 sirt-1.15-41/sirt/man/mcmc.2pno.Rd | 8 sirt-1.15-41/sirt/man/mcmc.2pno.ml.Rd | 18 sirt-1.15-41/sirt/man/mcmc.2pnoh.Rd | 2 sirt-1.15-41/sirt/man/mcmc.3pno.testlet.Rd | 14 sirt-1.15-41/sirt/man/mcmc.list.descriptives.Rd | 2 sirt-1.15-41/sirt/man/mcmc_Rhat.Rd | 4 sirt-1.15-41/sirt/man/mcmc_coef.Rd | 4 sirt-1.15-41/sirt/man/mcmclist2coda.Rd | 2 sirt-1.15-41/sirt/man/md.pattern.sirt.Rd | 4 sirt-1.15-41/sirt/man/mirt.wrapper.Rd | 12 sirt-1.15-41/sirt/man/mle.pcm.group.Rd | 12 sirt-1.15-41/sirt/man/modelfit.sirt.Rd | 46 sirt-1.15-41/sirt/man/nedelsky.sim.Rd | 24 sirt-1.15-41/sirt/man/noharm.sirt.Rd | 47 sirt-1.15-41/sirt/man/np.dich.Rd | 6 sirt-1.15-41/sirt/man/parmsummary_extend.Rd | 2 sirt-1.15-41/sirt/man/pbivnorm2.Rd | 2 sirt-1.15-41/sirt/man/pcm.fit.Rd | 4 sirt-1.15-41/sirt/man/person.parameter.rasch.copula.Rd | 10 sirt-1.15-41/sirt/man/personfit.stat.Rd | 6 sirt-1.15-41/sirt/man/pgenlogis.Rd | 10 sirt-1.15-41/sirt/man/plausible.value.imputation.raschtype.Rd | 10 sirt-1.15-41/sirt/man/polychoric2.Rd | 2 sirt-1.15-41/sirt/man/prior_model_parse.Rd | 2 sirt-1.15-41/sirt/man/prmse.subscores.scales.Rd | 2 sirt-1.15-41/sirt/man/prob.guttman.Rd | 10 sirt-1.15-41/sirt/man/rasch.copula.Rd | 36 sirt-1.15-41/sirt/man/rasch.evm.pcm.Rd | 16 sirt-1.15-41/sirt/man/rasch.jml.Rd | 10 sirt-1.15-41/sirt/man/rasch.jml.biascorr.Rd | 4 sirt-1.15-41/sirt/man/rasch.jml.jackknife1.Rd | 6 sirt-1.15-41/sirt/man/rasch.mirtlc.Rd | 70 sirt-1.15-41/sirt/man/rasch.mml.Rd | 113 sirt-1.15-41/sirt/man/rasch.pairwise.Rd | 6 sirt-1.15-41/sirt/man/rasch.pairwise.itemcluster.Rd | 12 sirt-1.15-41/sirt/man/rasch.pml3.Rd | 50 sirt-1.15-41/sirt/man/rasch.prox.Rd | 2 sirt-1.15-41/sirt/man/rasch.va.Rd | 8 sirt-1.15-41/sirt/man/reliability.nonlinearSEM.Rd | 4 sirt-1.15-41/sirt/man/rinvgamma2.Rd | 4 sirt-1.15-41/sirt/man/rm.facets.Rd | 18 sirt-1.15-41/sirt/man/rm.sdt.Rd | 16 sirt-1.15-41/sirt/man/sia.sirt.Rd | 2 sirt-1.15-41/sirt/man/sim.qm.ramsay.Rd | 20 sirt-1.15-41/sirt/man/sim.rasch.dep.Rd | 16 sirt-1.15-41/sirt/man/sim.raschtype.Rd | 2 sirt-1.15-41/sirt/man/sirt-defunct.Rd | 4 sirt-1.15-41/sirt/man/sirt-package.Rd | 1071 ++--- sirt-1.15-41/sirt/man/sirt-utilities.Rd | 186 - sirt-1.15-41/sirt/man/smirt.Rd | 38 sirt-1.15-41/sirt/man/starts_cov.Rd | 6 sirt-1.15-41/sirt/man/tam2mirt.Rd | 14 sirt-1.15-41/sirt/man/testlet.marginalized.Rd | 6 sirt-1.15-41/sirt/man/tetrachoric2.Rd | 8 sirt-1.15-41/sirt/man/truescore.irt.Rd | 12 sirt-1.15-41/sirt/man/unidim.test.csn.Rd | 8 sirt-1.15-41/sirt/man/wle.rasch.Rd | 4 sirt-1.15-41/sirt/man/wle.rasch.jackknife.Rd | 12 sirt-1.15-41/sirt/man/xxirt.Rd | 96 sirt-1.15-41/sirt/man/xxirt_createParTable.Rd | 10 sirt-1.15-41/sirt/man/xxirt_createThetaDistribution.Rd | 2 sirt-1.15-41/sirt/src/RcppExports.cpp |only sirt-1.15-41/sirt/src/eigenvaluessirt.cpp | 62 sirt-1.15-41/sirt/src/evm_comp_matrix_poly.cpp | 272 + sirt-1.15-41/sirt/src/gooijer_isop.cpp | 93 sirt-1.15-41/sirt/src/init.c |only sirt-1.15-41/sirt/src/invariance_alignment.cpp | 153 sirt-1.15-41/sirt/src/matrixfunctions_sirt.cpp | 258 - sirt-1.15-41/sirt/src/mle_pcm_group_c.cpp | 80 sirt-1.15-41/sirt/src/mlnormal_helper_functions.cpp | 150 sirt-1.15-41/sirt/src/noharm_sirt_auxfunctions.cpp | 177 sirt-1.15-41/sirt/src/polychoric2_tetrachoric2_rcpp_aux.cpp | 79 sirt-1.15-41/sirt/src/probs_multcat_items_counts_csirt.cpp | 106 sirt-1.15-41/sirt/src/rm_smirt_mml2_code.cpp | 509 -- 419 files changed, 5090 insertions(+), 5723 deletions(-)
Title: Example Data from the Multi-Modal MRI Reproducibility Resource
Description: Multi-modal magnetic resonance imaging ('MRI')
data from the 'Kirby21' reproducibility study
<https://www.nitrc.org/projects/multimodal/>, including functional
and structural imaging.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between kirby21.base versions 1.5 dated 2017-02-28 and 1.5.1.1 dated 2017-03-02
DESCRIPTION | 14 ++++++++------ MD5 | 4 ++-- R/download_kirby21_data.R | 3 +++ 3 files changed, 13 insertions(+), 8 deletions(-)
Title: Indoor Positioning Fingerprinting Toolset
Description: Algorithms and utility functions for indoor positioning using fingerprinting techniques.
These functions are designed for manipulation of RSSI (Received Signal Strength Intensity) data
sets, estimation of positions,comparison of the performance of different models, and graphical
visualization of data. Machine learning algorithms and methods such as k-nearest neighbors or
probabilistic fingerprinting are implemented in this package to perform analysis
and estimations over RSSI data sets.
Author: Emilio Sansano
Maintainer: Emilio Sansano <esansano@uji.es>
Diff between ipft versions 0.2.2 dated 2017-02-21 and 0.2.8 dated 2017-03-02
DESCRIPTION | 6 +- MD5 | 26 ++++----- R/data.R | 4 - R/ipft.R | 150 +++++++++++++++++++++++++++++++++++++--------------- data/ipftest.rda |binary data/ipftrain.rda |binary man/ipfDist.Rd | 2 man/ipfKnn.Rd | 5 - man/ipfPlotEcdf.Rd | 5 - man/ipfPlotPdf.Rd | 5 - man/ipfTransform.Rd | 26 ++++----- man/ipftest.Rd | 2 man/ipftrain.Rd | 2 src/ipf.cpp | 14 ++++ 14 files changed, 154 insertions(+), 93 deletions(-)
More information about CDVineCopulaConditional at CRAN
Permanent link
Title: Check if a Remote Computer is Up
Description: Check if a remote computer is up. It can either
just call the system ping command, or check a specified
TCP port.
Author: Gábor Csárdi [aut, cre]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pingr versions 1.1.0 dated 2014-10-06 and 1.1.2 dated 2017-03-02
DESCRIPTION | 17 ++++++++++------- LICENSE | 4 ++-- MD5 | 22 +++++++++++----------- NAMESPACE | 4 ++-- R/ping-package.r | 2 +- README.md | 12 +++++++----- man/is_online.Rd | 4 ++-- man/ping.Rd | 4 ++-- man/ping_port.Rd | 4 ++-- man/pingr-package.Rd | 4 ++-- src/rping.c | 12 ++++++++++++ tests/testthat/test-tcp.r | 10 +++++++--- 12 files changed, 60 insertions(+), 39 deletions(-)
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles,
random deviates and densities.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb],
Martin Maechler [ctb],
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.0-5 dated 2016-02-02 and 1.0-6 dated 2017-03-02
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/mvnorm.R | 10 +++++----- R/mvt.R | 14 +++++++++----- R/noisy-root.R | 11 ++++++++--- build/vignette.rds |binary inst/CITATION | 2 +- inst/NEWS | 4 ++++ inst/doc/MVT_Rnews.pdf |binary man/algorithms.Rd | 2 +- src/miwa.c | 5 +++++ src/mvtnorm-init.c | 3 ++- tests/bugfix-tests.R | 28 ++++++++++++++-------------- tests/bugfix-tests.Rout.save | 34 +++++++++++++++++----------------- 14 files changed, 83 insertions(+), 64 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Pacote para analise multivariada, que possui funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise de cluster hierarquico e nao hierarquico, regressao linear, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos. Tambem possui outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@dex.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 1.9.6 dated 2017-02-19 and 1.9.7 dated 2017-03-02
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/CA.R | 8 +++++++- R/IM.R | 2 +- R/Plot.CA.R | 12 ++++++------ man/MVar.pt-package.Rd | 4 ++-- man/Plot.CA.Rd | 2 +- 7 files changed, 27 insertions(+), 21 deletions(-)
Title: Maximally Selected Rank Statistics
Description: Maximally selected rank statistics with
several p-value approximations.
Author: Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between maxstat versions 0.7-24 dated 2016-04-06 and 0.7-25 dated 2017-03-02
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NAMESPACE | 2 +- R/corrmsrs.R | 3 +-- R/maxstat.R | 14 +++++++------- build/vignette.rds |binary data/treepipit.rda |binary inst/NEWS | 10 +++++++++- inst/doc/maxstat.pdf |binary src/init.c |only src/maxstatpermdist.c | 2 +- 11 files changed, 33 insertions(+), 25 deletions(-)
Title: Extractive Summarization of Text with the LexRank Algorithm
Description: An R implementation of the LexRank algorithm described by G. Erkan and D. R. Radev (2004) <DOI:10.1613/jair.1523>.
Author: Adam Spannbauer <spannbaueradam@gmail.com>
Maintainer: Adam Spannbauer <spannbaueradam@gmail.com>
Diff between lexRankr versions 0.3.0 dated 2016-10-25 and 0.4.0 dated 2017-03-02
lexRankr-0.3.0/lexRankr/R/tokenizeSentenceParse.R |only lexRankr-0.4.0/lexRankr/DESCRIPTION | 9 ++- lexRankr-0.4.0/lexRankr/MD5 | 44 +++++++++++++---- lexRankr-0.4.0/lexRankr/NAMESPACE | 4 + lexRankr-0.4.0/lexRankr/NEWS.md | 6 ++ lexRankr-0.4.0/lexRankr/R/RcppExports.R | 2 lexRankr-0.4.0/lexRankr/R/bind_lexrank.R |only lexRankr-0.4.0/lexRankr/R/sentenceParse.R | 4 - lexRankr-0.4.0/lexRankr/R/sentenceSimil.R | 2 lexRankr-0.4.0/lexRankr/R/sentence_parser.R |only lexRankr-0.4.0/lexRankr/R/tokenize.R | 13 ++++- lexRankr-0.4.0/lexRankr/R/unnest_sentences.R |only lexRankr-0.4.0/lexRankr/README.md | 54 ++++++++++------------ lexRankr-0.4.0/lexRankr/build |only lexRankr-0.4.0/lexRankr/inst |only lexRankr-0.4.0/lexRankr/man/bind_lexrank_.Rd |only lexRankr-0.4.0/lexRankr/man/sentenceTokenParse.Rd | 2 lexRankr-0.4.0/lexRankr/man/sentence_parser.Rd |only lexRankr-0.4.0/lexRankr/man/unnest_sentences_.Rd |only lexRankr-0.4.0/lexRankr/src/RcppExports.cpp | 10 ++-- lexRankr-0.4.0/lexRankr/src/register_routines.c |only lexRankr-0.4.0/lexRankr/tests |only lexRankr-0.4.0/lexRankr/vignettes |only 23 files changed, 93 insertions(+), 57 deletions(-)
Title: Easy Authentication with Google OAuth2 API
Description: Create R functions that interact with OAuth2 Google APIs easily,
with auto-refresh and Shiny compatibility.
Author: Mark Edmondson [aut, cre],
Jennifer Bryan [ctb],
Johann deBoer [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAuthR versions 0.4.0 dated 2016-09-04 and 0.5.0 dated 2017-03-02
googleAuthR-0.4.0/googleAuthR/inst/doc/googleAuthR.Rmd |only googleAuthR-0.4.0/googleAuthR/inst/doc/googleAuthR.html |only googleAuthR-0.4.0/googleAuthR/vignettes/googleAuthR.Rmd |only googleAuthR-0.5.0/googleAuthR/DESCRIPTION | 12 googleAuthR-0.5.0/googleAuthR/MD5 | 151 +++---- googleAuthR-0.5.0/googleAuthR/NAMESPACE | 2 googleAuthR-0.5.0/googleAuthR/NEWS.md | 26 + googleAuthR-0.5.0/googleAuthR/R/googleAuthR_auth.R | 204 ++++++++-- googleAuthR-0.5.0/googleAuthR/R/googleAuthR_auto_auth.R | 8 googleAuthR-0.5.0/googleAuthR/R/googleAuthR_discovery.R | 17 googleAuthR-0.5.0/googleAuthR/R/googleAuthR_discovery_build.R | 9 googleAuthR-0.5.0/googleAuthR/R/googleAuthR_discovery_utilities.R | 12 googleAuthR-0.5.0/googleAuthR/R/googleAuthR_generator.R | 40 + googleAuthR-0.5.0/googleAuthR/R/googleAuthR_shiny.R | 4 googleAuthR-0.5.0/googleAuthR/README.md | 20 googleAuthR-0.5.0/googleAuthR/build/vignette.rds |binary googleAuthR-0.5.0/googleAuthR/inst/doc/building.Rmd |only googleAuthR-0.5.0/googleAuthR/inst/doc/building.html |only googleAuthR-0.5.0/googleAuthR/inst/doc/google-authentication-types.Rmd |only googleAuthR-0.5.0/googleAuthR/inst/doc/google-authentication-types.html |only googleAuthR-0.5.0/googleAuthR/inst/doc/setup.Rmd |only googleAuthR-0.5.0/googleAuthR/inst/doc/setup.html |only googleAuthR-0.5.0/googleAuthR/inst/shiny/rsconnect |only googleAuthR-0.5.0/googleAuthR/man/Authentication.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/RFC_convert.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/applyDataParseFunction.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/authReturnCode.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/check.Url.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/checkGoogleAPIError.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/checkTokenAPI.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/check_cached_scopes.Rd |only googleAuthR-0.5.0/googleAuthR/man/createCode.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/doBatchRequest.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/doHttrRequest.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/error.message.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_api_generator.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_attach_auto_auth.Rd | 5 googleAuthR-0.5.0/googleAuthR/man/gar_auth.Rd | 3 googleAuthR-0.5.0/googleAuthR/man/gar_auth_js.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_auth_jsUI.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_auth_service.Rd | 2 googleAuthR-0.5.0/googleAuthR/man/gar_auto_auth.Rd | 2 googleAuthR-0.5.0/googleAuthR/man/gar_batch.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_batch_walk.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_create_api_objects.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_create_api_skeleton.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_create_package.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_discovery_api.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_discovery_apis_list.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_gadget.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_gce_auth.Rd |only googleAuthR-0.5.0/googleAuthR/man/gar_js_getToken.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_shiny_getAuthUrl.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_shiny_getToken.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_shiny_getUrl.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/gar_token_info.Rd |only googleAuthR-0.5.0/googleAuthR/man/get_google_token.Rd | 3 googleAuthR-0.5.0/googleAuthR/man/googleAuth.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/googleAuthUI.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/is.NullOb.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/is.error.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/is_legit_token.Rd | 3 googleAuthR-0.5.0/googleAuthR/man/is_shiny.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/loginOutput.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/makeBatchRequest.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/myMessage.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/parseBatchResponse.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/postwalk.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/reactiveAccessToken.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/renderLogin.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/replace.kv.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/retryRequest.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/revokeEventObserver.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/rmNullObs.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/split_vector.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/substitute.list.Rd | 1 googleAuthR-0.5.0/googleAuthR/man/token_exists.Rd | 3 googleAuthR-0.5.0/googleAuthR/man/with_shiny.Rd | 1 googleAuthR-0.5.0/googleAuthR/tests/testthat/httr-oauth.rds |binary googleAuthR-0.5.0/googleAuthR/tests/testthat/test-discovery.R | 24 - googleAuthR-0.5.0/googleAuthR/tests/testthat/test-gaAuthR.R | 1 googleAuthR-0.5.0/googleAuthR/vignettes/building.Rmd |only googleAuthR-0.5.0/googleAuthR/vignettes/google-authentication-types.Rmd |only googleAuthR-0.5.0/googleAuthR/vignettes/googleAuthR.html |only googleAuthR-0.5.0/googleAuthR/vignettes/setup.Rmd |only 85 files changed, 402 insertions(+), 194 deletions(-)
Title: A Method for Creating Xylophone-Like Frequency Density Plots
Description: A method for creating vertical histograms sharing a y-axis using
base graphics.
Author: Daniel Greene
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between xyloplot versions 1.3 dated 2016-06-20 and 1.5 dated 2017-03-02
DESCRIPTION | 8 ++-- MD5 | 26 +++++++-------- NEWS.md | 4 ++ R/functions.R | 78 +++++++++++++++++++++++++++++++++++----------- build/vignette.rds |binary inst/doc/Examples.R | 4 ++ inst/doc/Examples.Rmd | 9 +++++ inst/doc/Examples.html | 35 +++++++++++--------- man/xyloplot.Rd | 6 ++- man/xyloplot.character.Rd | 4 +- man/xyloplot.factor.Rd | 4 +- man/xyloplot.list.Rd | 17 +++++----- man/xyloplot.numeric.Rd | 4 +- vignettes/Examples.Rmd | 9 +++++ 14 files changed, 145 insertions(+), 63 deletions(-)
Title: High-Speed Processing of VCF, FASTA and Alignment Data
Description: Provides very fast access to whole genome, population scale variation data
from VCF files and sequence data from FASTA-formatted files.
It also reads in alignments from FASTA, Phylip, MAF and other file formats.
Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data
from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
Author: Ulrich Wittelsbuerger [aut, cre], Heng Li [ctb], Bob Handsaker [ctb]
Maintainer: Ulrich Wittelsbuerger <ulrich.wittelsbuerger@uni-duesseldorf.de>
Diff between WhopGenome versions 0.9.4 dated 2016-07-07 and 0.9.6 dated 2017-03-02
DESCRIPTION | 8 ++++---- MD5 | 36 +++++++++++++++++++----------------- NAMESPACE | 1 + R/read_simple.R | 5 +++-- R/regions.R | 5 +++++ man/fai_close.Rd | 2 +- man/fai_open.Rd | 2 +- man/fai_query2.Rd | 2 +- man/fai_query4.Rd | 2 +- man/fai_reopen.Rd | 2 +- man/tabix_read.Rd | 2 +- man/vcf_eor.Rd |only man/vcf_readLineRaw.Rd | 16 ++++++++-------- src/Makevars | 2 +- src/Makevars.win | 2 +- src/WhopGenome-win.def |only src/tabix/knetfile.c | 2 +- src/tabix/knetfile.h | 1 + src/w_common.h | 4 ++-- src/w_main.cpp | 29 +++++++++++++++++++++++------ 20 files changed, 75 insertions(+), 48 deletions(-)
Title: Test Analysis Modules
Description:
Includes marginal maximum likelihood estimation of uni- and
multidimensional item response models (Rasch, 2PL, 3PL,
Generalized Partial Credit, Multi Facets,
Nominal Item Response, Structured Latent Class Analysis,
Mixture Distribution IRT Models, Located Latent Class Models)
and joint maximum likelihood estimation for models
from the Rasch family.
Latent regression models and plausible value imputation are
also supported.
Author:
Thomas Kiefer [aut], Alexander Robitzsch [aut, cre], Margaret Wu [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between TAM versions 1.99993-0 dated 2017-02-06 and 1.99999-31 dated 2017-03-02
DESCRIPTION | 10 MD5 | 89 - R/IRTLikelihood.cfa.R | 4 R/RcppExports.R |only R/TAM-internal_helper.R | 13 R/TAM_utils.R | 13 R/calc_exp_TK.R | 12 R/calc_posterior.v2.R | 16 R/create.deltaDesign.R | 2 R/designMatrices.mfr.R | 13 R/designMatrices.mfr2.R | 13 R/designMatrices.mfr_aux.R | 4 R/designMatrices_aux.R | 3 R/dmvnorm_TAM.R | 6 R/extend.label.group.R | 5 R/msq.itemfit.R | 7 R/plotDevianceTAM.R | 10 R/predict.tam.R | 2 R/stud_prior.R | 8 R/summary.tam.R | 6 R/tam.ctt2.R | 5 R/tam.ctt3.R | 6 R/tam.fit.R | 5 R/tam.mml.3pl.R | 6 R/tam.mml.3pl.algorithm.R | 4 R/tam.mml.3pl.est.slopes.R | 5 R/tam.modelfit.R | 16 R/tam.wle.R | 28 R/tam_mml_3pl_calc_exp.R | 4 inst/NEWS | 2100 +++++++++++++++++------------------ man/TAM-package.Rd | 11 man/tam.threshold.Rd | 2 man/tam.wle.Rd | 5 src/RcppExports.cpp |only src/init.c |only src/irt_likelihood_cfa2.cpp | 41 src/msq_itemfit.cpp | 153 -- src/prior_normal_density_c.cpp | 77 - src/rowcumsums_source.cpp | 50 src/tam_calcexp.cpp | 142 -- src/tam_ctt_c.cpp | 108 - src/tam_fit_simul.cpp | 58 src/tam_helper_ccode.cpp | 87 - src/tam_mml_3pl_helper_functions.cpp | 223 --- src/tam_mml_mfr_helper.cpp | 165 -- src/tam_modelfit_aux.cpp | 176 -- src/tamwle_helper_ccode.cpp | 89 - 47 files changed, 1493 insertions(+), 2309 deletions(-)
Title: Fast and Stable Estimation of the Probability of Informed
Trading (PIN)
Description: Utilities for fast and stable estimation of the probability of
informed trading (PIN) in the model introduced by Easley et al. (2002)
<DOI:10.1111/1540-6261.00493> are implemented. Since the basic model developed
by Easley et al. (1996) <DOI:10.1111/j.1540-6261.1996.tb04074.x> is nested in the
former due to equating the intensity of uninformed buys and sells, functions
can also be applied to this simpler model structure, if needed.
State-of-the-art factorization of the model likelihood function as well as
most recent algorithms for generating initial values for optimization routines are implemented.
In total, two likelihood factorizations and three methodologies for
starting values are included.
Furthermore, functions for simulating datasets of daily aggregated buys and sells,
calculating confidence intervals for the probability of informed trading and posterior probabilities
of trading days' conditions are available.
Author: Andreas Recktenwald [aut, cre]
Maintainer: Andreas Recktenwald <a.recktenwald@mx.uni-saarland.de>
Diff between pinbasic versions 1.0.1 dated 2017-01-11 and 1.1.0 dated 2017-03-02
DESCRIPTION | 14 +- MD5 | 107 ++++++++++++++------- NAMESPACE | 8 - NEWS | 14 ++ NEWS.md | 14 ++ R/RcppExports.R |only R/pin_confint.R | 106 +++++++++++---------- R/pin_est.R | 6 - R/pin_ll_CAR.R | 186 +------------------------------------ R/pin_max.R | 26 ++--- R/pinbasic.R | 2 R/quarterly_pin.R | 5 R/simulate_data.R | 42 -------- README.md |only build/partial.rdb |binary inst/doc/pinbasicVignette.R | 2 inst/doc/pinbasicVignette.html | 50 ++++----- man/BSfrequent.Rd | 1 man/BSfrequent2015.Rd | 1 man/BSheavy.Rd | 1 man/BSinfrequent.Rd | 1 man/ggplot.posterior.Rd | 1 man/ggplot.qpin.Rd | 1 man/initial_vals.Rd | 5 man/pin_calc.Rd | 3 man/pin_confint.Rd | 24 ++-- man/pin_est.Rd | 13 +- man/pin_est_core.Rd | 27 ++--- man/pin_ll.Rd | 9 - man/posterior.Rd | 7 - man/qpin.Rd | 12 +- man/simulateBS.Rd | 6 - src |only vignettes/Examples/Examples.Rmd | 2 vignettes/RDSfiles/ci1.rds |binary vignettes/RDSfiles/ci4.rds |binary vignettes/RDSfiles/pin_bsheavy.rds |binary vignettes/RDSfiles/qpin2015.rds |binary vignettes/RDSfiles/systimeci1.rds |binary vignettes/RDSfiles/systimeci4.rds |binary vignettes/tikzfigs |only 41 files changed, 269 insertions(+), 427 deletions(-)
Title: A Fast and Versatile SVM Package
Description: Support vector machines (SVMs) and related kernel-based learning
algorithms are a well-known class of machine learning algorithms, for non-
parametric classification and regression. liquidSVM is an implementation of
SVMs whose key features are: fully integrated hyper-parameter selection, extreme
speed on both small and large data sets, inclusion of a variety of different
classification and regression scenarios, and full flexibility for experts.
Author: Ingo Steinwart, Philipp Thomann
Maintainer: Philipp Thomann <philipp.thomann@mathematik.uni-stuttgart.de>
Diff between liquidSVM versions 1.0.0 dated 2017-02-24 and 1.0.1 dated 2017-03-02
DESCRIPTION | 12 +- MD5 | 43 ++++---- README.md | 32 +++++- configure | 18 ++- inst/doc/demo.Rmd | 7 - inst/doc/demo.html | 11 -- inst/doc/documentation.Rmd | 51 +++++---- inst/doc/documentation.html | 50 +++++---- src/liquidSVM.cpp | 4 src/liquidSVM_R.cpp | 8 - src/main.cpp | 23 ++++ src/scenario_config.cpp | 6 + src/sources/shared/basic_functions/flush_print.cpp | 10 - src/sources/shared/basic_functions/flush_print.ins.cpp | 4 src/sources/shared/basic_types/cache_lru.h | 12 +- src/sources/shared/kernel/kernel.cpp | 17 +-- src/sources/shared/system_support/compiler_specifics.h |only src/sources/shared/system_support/memory_allocation.ins.cpp | 63 ++++++------ src/sources/shared/system_support/os_specifics.h | 34 ++++++ src/sources/svm/solver/expectile_svm.cpp | 2 src/sources/svm/solver/generic_2D_svm.ins.cpp | 1 vignettes/demo.Rmd | 7 - vignettes/documentation.Rmd | 51 +++++---- 23 files changed, 301 insertions(+), 165 deletions(-)
Title: An R Package for Text Analysis
Description: A set of tools to analyze texts. Includes, amongst others, functions for automatic language detection, hyphenation,
several indices of lexical diversity (e.g., type token ratio, HD-D/vocd-D, MTLD) and readability (e.g., Flesch, SMOG,
LIX, Dale-Chall). Basic import functions for language corpora are also provided, to enable frequency analyses (supports
Celex and Leipzig Corpora Collection file formats) and measures like tf-idf. Support for additional languages can be
added on-the-fly or by plugin packages. Note: For full functionality a local installation of TreeTagger is recommended.
'koRpus' also includes a plugin for the R GUI and IDE RKWard, providing graphical dialogs for its basic features. The
respective R package 'rkward' cannot be installed directly from a repository, as it is a part of RKWard. To make full
use of this feature, please install RKWard from <https://rkward.kde.org> (plugins are detected automatically). Due to
some restrictions on CRAN, the full package sources are only available from the project homepage. To ask for help,
report bugs, request features, or discuss the development of the package, please subscribe to the koRpus-dev mailing
list (<http://korpusml.reaktanz.de>).
Author: m.eik michalke [aut, cre],
Earl Brown [ctb],
Alberto Mirisola [ctb],
Alexandre Brulet [ctb],
Laura Hauser [ctb]
Maintainer: m.eik michalke <meik.michalke@hhu.de>
Diff between koRpus versions 0.06-5 dated 2016-06-06 and 0.10-1 dated 2017-03-02
koRpus-0.06-5/koRpus/R/00_class_01_kRp.tagged.R |only koRpus-0.06-5/koRpus/R/00_class_02_kRp.TTR.R |only koRpus-0.06-5/koRpus/R/00_class_03_kRp.txt.freq.R |only koRpus-0.06-5/koRpus/R/00_class_04_kRp.txt.trans.R |only koRpus-0.06-5/koRpus/R/00_class_05_kRp.analysis.R |only koRpus-0.06-5/koRpus/R/00_class_06_kRp.corp.freq.R |only koRpus-0.06-5/koRpus/R/00_class_07_kRp.hyph.pat.R |only koRpus-0.06-5/koRpus/R/00_class_08_kRp.hyphen.R |only koRpus-0.06-5/koRpus/R/00_class_09_kRp.lang.R |only koRpus-0.06-5/koRpus/R/00_class_10_kRp.readability.R |only koRpus-0.06-5/koRpus/R/01_method_cTest.R |only koRpus-0.06-5/koRpus/R/01_method_clozeDelete.R |only koRpus-0.06-5/koRpus/R/01_method_correct.R |only koRpus-0.06-5/koRpus/R/01_method_freq.analysis.R |only koRpus-0.06-5/koRpus/R/01_method_hyphen.R |only koRpus-0.06-5/koRpus/R/01_method_kRp.taggedText.R |only koRpus-0.06-5/koRpus/R/01_method_lex.div.R |only koRpus-0.06-5/koRpus/R/01_method_plot.kRp.tagged.R |only koRpus-0.06-5/koRpus/R/01_method_query.R |only koRpus-0.06-5/koRpus/R/01_method_read.corp.custom.R |only koRpus-0.06-5/koRpus/R/01_method_readability.R |only koRpus-0.06-5/koRpus/R/01_method_show.kRp.TTR.R |only koRpus-0.06-5/koRpus/R/01_method_show.kRp.corp.freq.R |only koRpus-0.06-5/koRpus/R/01_method_show.kRp.lang.R |only koRpus-0.06-5/koRpus/R/01_method_show.kRp.readability.R |only koRpus-0.06-5/koRpus/R/01_method_summary.kRp.TTR.R |only koRpus-0.06-5/koRpus/R/01_method_summary.kRp.lang.R |only koRpus-0.06-5/koRpus/R/01_method_summary.kRp.readability.R |only koRpus-0.06-5/koRpus/R/01_method_summary.kRp.tagged.R |only koRpus-0.06-5/koRpus/R/01_method_summary.kRp.txt.freq.R |only koRpus-0.10-1/koRpus/ChangeLog | 97 + koRpus-0.10-1/koRpus/DESCRIPTION | 89 - koRpus-0.10-1/koRpus/MD5 | 348 +++--- koRpus-0.10-1/koRpus/NAMESPACE | 6 koRpus-0.10-1/koRpus/R/00_environment.R |only koRpus-0.10-1/koRpus/R/01_class_01_kRp.tagged.R |only koRpus-0.10-1/koRpus/R/01_class_02_kRp.TTR.R |only koRpus-0.10-1/koRpus/R/01_class_03_kRp.txt.freq.R |only koRpus-0.10-1/koRpus/R/01_class_04_kRp.txt.trans.R |only koRpus-0.10-1/koRpus/R/01_class_05_kRp.analysis.R |only koRpus-0.10-1/koRpus/R/01_class_06_kRp.corp.freq.R |only koRpus-0.10-1/koRpus/R/01_class_07_kRp.hyph.pat.R |only koRpus-0.10-1/koRpus/R/01_class_08_kRp.hyphen.R |only koRpus-0.10-1/koRpus/R/01_class_09_kRp.lang.R |only koRpus-0.10-1/koRpus/R/01_class_10_kRp.readability.R |only koRpus-0.10-1/koRpus/R/02_method_cTest.R |only koRpus-0.10-1/koRpus/R/02_method_clozeDelete.R |only koRpus-0.10-1/koRpus/R/02_method_correct.R |only koRpus-0.10-1/koRpus/R/02_method_freq.analysis.R |only koRpus-0.10-1/koRpus/R/02_method_hyphen.R |only koRpus-0.10-1/koRpus/R/02_method_kRp.taggedText.R |only koRpus-0.10-1/koRpus/R/02_method_lex.div.R |only koRpus-0.10-1/koRpus/R/02_method_plot.kRp.tagged.R |only koRpus-0.10-1/koRpus/R/02_method_query.R |only koRpus-0.10-1/koRpus/R/02_method_read.corp.custom.R |only koRpus-0.10-1/koRpus/R/02_method_readability.R |only koRpus-0.10-1/koRpus/R/02_method_show.kRp.TTR.R |only koRpus-0.10-1/koRpus/R/02_method_show.kRp.corp.freq.R |only koRpus-0.10-1/koRpus/R/02_method_show.kRp.hyphen.R |only koRpus-0.10-1/koRpus/R/02_method_show.kRp.lang.R |only koRpus-0.10-1/koRpus/R/02_method_show.kRp.readability.R |only koRpus-0.10-1/koRpus/R/02_method_show.kRp.taggedText.R |only koRpus-0.10-1/koRpus/R/02_method_summary.kRp.TTR.R |only koRpus-0.10-1/koRpus/R/02_method_summary.kRp.hyphen.R |only koRpus-0.10-1/koRpus/R/02_method_summary.kRp.lang.R |only koRpus-0.10-1/koRpus/R/02_method_summary.kRp.readability.R |only koRpus-0.10-1/koRpus/R/02_method_summary.kRp.tagged.R |only koRpus-0.10-1/koRpus/R/02_method_summary.kRp.txt.freq.R |only koRpus-0.10-1/koRpus/R/02_method_types_tokens.R |only koRpus-0.10-1/koRpus/R/ELF.R | 4 koRpus-0.10-1/koRpus/R/MTLD.R | 7 koRpus-0.10-1/koRpus/R/flesch.R | 3 koRpus-0.10-1/koRpus/R/get.kRp.env.R | 13 koRpus-0.10-1/koRpus/R/guess.lang.R | 2 koRpus-0.10-1/koRpus/R/koRpus-internal.R | 520 ++++----- koRpus-0.10-1/koRpus/R/koRpus-internal.freq.analysis.R | 2 koRpus-0.10-1/koRpus/R/koRpus-internal.hyphen.R | 521 ++++++++-- koRpus-0.10-1/koRpus/R/koRpus-internal.lexdiv.formulae.R | 273 +++-- koRpus-0.10-1/koRpus/R/koRpus-internal.rdb.formulae.R | 253 ++-- koRpus-0.10-1/koRpus/R/koRpus-package.R | 34 koRpus-0.10-1/koRpus/R/lang.support-de.R | 103 - koRpus-0.10-1/koRpus/R/lang.support-en.R | 57 - koRpus-0.10-1/koRpus/R/lang.support-es.R | 87 - koRpus-0.10-1/koRpus/R/lang.support-fr.R | 103 - koRpus-0.10-1/koRpus/R/lang.support-it.R | 71 - koRpus-0.10-1/koRpus/R/lang.support-ru.R | 32 koRpus-0.10-1/koRpus/R/read.corp.LCC.R | 175 ++- koRpus-0.10-1/koRpus/R/set.kRp.env.R | 10 koRpus-0.10-1/koRpus/R/set.lang.support.R | 11 koRpus-0.10-1/koRpus/R/tokenize.R | 1 koRpus-0.10-1/koRpus/R/treetag.R | 136 +- koRpus-0.10-1/koRpus/README.md | 27 koRpus-0.10-1/koRpus/inst/CITATION | 12 koRpus-0.10-1/koRpus/inst/NEWS.Rd | 143 ++ koRpus-0.10-1/koRpus/inst/doc/koRpus_vignette.R |only koRpus-0.10-1/koRpus/inst/doc/koRpus_vignette.Rnw | 2 koRpus-0.10-1/koRpus/inst/doc/koRpus_vignette.pdf |binary koRpus-0.10-1/koRpus/inst/rkward/koRpus.pluginmap | 8 koRpus-0.10-1/koRpus/inst/rkward/plugins/FrequencyAnalysis.js | 15 koRpus-0.10-1/koRpus/inst/rkward/plugins/FrequencyAnalysis.xml | 8 koRpus-0.10-1/koRpus/inst/rkward/plugins/Hyphenation.js | 13 koRpus-0.10-1/koRpus/inst/rkward/plugins/Hyphenation.xml | 12 koRpus-0.10-1/koRpus/inst/rkward/plugins/LexicalDiversity.js | 14 koRpus-0.10-1/koRpus/inst/rkward/plugins/LexicalDiversity.xml | 10 koRpus-0.10-1/koRpus/inst/rkward/plugins/Readability.js | 57 - koRpus-0.10-1/koRpus/inst/rkward/plugins/Readability.xml | 13 koRpus-0.10-1/koRpus/inst/rkward/plugins/TokenizingPOStagging.js | 33 koRpus-0.10-1/koRpus/inst/rkward/plugins/TokenizingPOStagging.xml | 16 koRpus-0.10-1/koRpus/inst/rkward/po/de/LC_MESSAGES/rkward__TokenizingPOStagging_rkward.mo |binary koRpus-0.10-1/koRpus/inst/rkward/po/rkward__TokenizingPOStagging_rkward.de.po | 439 ++++---- koRpus-0.10-1/koRpus/inst/rkward/po/rkward__TokenizingPOStagging_rkward.pot | 413 +++---- koRpus-0.10-1/koRpus/inst/rkward/rkwarddev_koRpus_plugin_script.R | 39 koRpus-0.10-1/koRpus/inst/shiny/demo/server.R | 14 koRpus-0.10-1/koRpus/inst/shiny/demo/ui.R | 240 ++-- koRpus-0.10-1/koRpus/inst/templates/lang.support-xx.R | 89 - koRpus-0.10-1/koRpus/inst/templates/package_koRpus.lang.xx.R | 11 koRpus-0.10-1/koRpus/man/ARI.Rd | 1 koRpus-0.10-1/koRpus/man/C.ld.Rd | 1 koRpus-0.10-1/koRpus/man/CTTR.Rd | 1 koRpus-0.10-1/koRpus/man/DRP.Rd | 1 koRpus-0.10-1/koRpus/man/ELF.Rd | 5 koRpus-0.10-1/koRpus/man/FOG.Rd | 1 koRpus-0.10-1/koRpus/man/FORCAST.Rd | 1 koRpus-0.10-1/koRpus/man/HDD.Rd | 1 koRpus-0.10-1/koRpus/man/K.ld.Rd | 1 koRpus-0.10-1/koRpus/man/LIX.Rd | 1 koRpus-0.10-1/koRpus/man/MATTR.Rd | 1 koRpus-0.10-1/koRpus/man/MSTTR.Rd | 1 koRpus-0.10-1/koRpus/man/MTLD.Rd | 9 koRpus-0.10-1/koRpus/man/R.ld.Rd | 1 koRpus-0.10-1/koRpus/man/RIX.Rd | 1 koRpus-0.10-1/koRpus/man/S.ld.Rd | 1 koRpus-0.10-1/koRpus/man/SMOG.Rd | 1 koRpus-0.10-1/koRpus/man/TRI.Rd | 1 koRpus-0.10-1/koRpus/man/TTR.Rd | 1 koRpus-0.10-1/koRpus/man/U.ld.Rd | 1 koRpus-0.10-1/koRpus/man/bormuth.Rd | 1 koRpus-0.10-1/koRpus/man/cTest-methods.Rd | 3 koRpus-0.10-1/koRpus/man/clozeDelete-methods.Rd | 3 koRpus-0.10-1/koRpus/man/coleman.Rd | 1 koRpus-0.10-1/koRpus/man/coleman.liau.Rd | 1 koRpus-0.10-1/koRpus/man/correct-methods.Rd | 9 koRpus-0.10-1/koRpus/man/dale.chall.Rd | 1 koRpus-0.10-1/koRpus/man/danielson.bryan.Rd | 1 koRpus-0.10-1/koRpus/man/dickes.steiwer.Rd | 1 koRpus-0.10-1/koRpus/man/farr.jenkins.paterson.Rd | 1 koRpus-0.10-1/koRpus/man/flesch.Rd | 4 koRpus-0.10-1/koRpus/man/flesch.kincaid.Rd | 1 koRpus-0.10-1/koRpus/man/freq.analysis-methods.Rd | 5 koRpus-0.10-1/koRpus/man/fucks.Rd | 1 koRpus-0.10-1/koRpus/man/get.kRp.env.Rd | 1 koRpus-0.10-1/koRpus/man/guess.lang.Rd | 1 koRpus-0.10-1/koRpus/man/harris.jacobson.Rd | 1 koRpus-0.10-1/koRpus/man/hyph.XX.Rd | 1 koRpus-0.10-1/koRpus/man/hyphen-methods.Rd | 10 koRpus-0.10-1/koRpus/man/jumbleWords.Rd | 1 koRpus-0.10-1/koRpus/man/kRp.POS.tags.Rd | 9 koRpus-0.10-1/koRpus/man/kRp.TTR-class.Rd | 10 koRpus-0.10-1/koRpus/man/kRp.analysis-class.Rd | 4 koRpus-0.10-1/koRpus/man/kRp.cluster.Rd | 1 koRpus-0.10-1/koRpus/man/kRp.corp.freq-class.Rd | 25 koRpus-0.10-1/koRpus/man/kRp.filter.wclass.Rd | 1 koRpus-0.10-1/koRpus/man/kRp.hyph.pat-class.Rd | 4 koRpus-0.10-1/koRpus/man/kRp.hyphen-class.Rd | 4 koRpus-0.10-1/koRpus/man/kRp.lang-class.Rd | 4 koRpus-0.10-1/koRpus/man/kRp.readability-class.Rd | 4 koRpus-0.10-1/koRpus/man/kRp.tagged-class.Rd | 4 koRpus-0.10-1/koRpus/man/kRp.taggedText-methods.Rd | 41 koRpus-0.10-1/koRpus/man/kRp.text.analysis.Rd | 1 koRpus-0.10-1/koRpus/man/kRp.text.paste.Rd | 1 koRpus-0.10-1/koRpus/man/kRp.text.transform.Rd | 1 koRpus-0.10-1/koRpus/man/kRp.txt.freq-class.Rd | 4 koRpus-0.10-1/koRpus/man/kRp.txt.trans-class.Rd | 4 koRpus-0.10-1/koRpus/man/koRpus-package.Rd | 49 koRpus-0.10-1/koRpus/man/lex.div-methods.Rd | 47 koRpus-0.10-1/koRpus/man/lex.div.num.Rd | 1 koRpus-0.10-1/koRpus/man/linsear.write.Rd | 1 koRpus-0.10-1/koRpus/man/maas.Rd | 1 koRpus-0.10-1/koRpus/man/manage.hyph.pat.Rd | 1 koRpus-0.10-1/koRpus/man/nWS.Rd | 3 koRpus-0.10-1/koRpus/man/plot-methods.Rd | 3 koRpus-0.10-1/koRpus/man/query-methods.Rd | 4 koRpus-0.10-1/koRpus/man/read.BAWL.Rd | 1 koRpus-0.10-1/koRpus/man/read.corp.LCC.Rd | 15 koRpus-0.10-1/koRpus/man/read.corp.celex.Rd | 1 koRpus-0.10-1/koRpus/man/read.corp.custom-methods.Rd | 5 koRpus-0.10-1/koRpus/man/read.hyph.pat.Rd | 1 koRpus-0.10-1/koRpus/man/read.tagged.Rd | 1 koRpus-0.10-1/koRpus/man/readability-methods.Rd | 17 koRpus-0.10-1/koRpus/man/readability.num.Rd | 1 koRpus-0.10-1/koRpus/man/segment.optimizer.Rd | 1 koRpus-0.10-1/koRpus/man/set.kRp.env.Rd | 8 koRpus-0.10-1/koRpus/man/set.lang.support.Rd | 2 koRpus-0.10-1/koRpus/man/show-methods.Rd | 35 koRpus-0.10-1/koRpus/man/spache.Rd | 1 koRpus-0.10-1/koRpus/man/strain.Rd | 1 koRpus-0.10-1/koRpus/man/summary-methods.Rd | 32 koRpus-0.10-1/koRpus/man/textFeatures.Rd | 1 koRpus-0.10-1/koRpus/man/tokenize.Rd | 1 koRpus-0.10-1/koRpus/man/traenkle.bailer.Rd | 1 koRpus-0.10-1/koRpus/man/treetag.Rd | 26 koRpus-0.10-1/koRpus/man/tuldava.Rd | 1 koRpus-0.10-1/koRpus/man/types.tokens-methods.Rd |only koRpus-0.10-1/koRpus/man/wheeler.smith.Rd | 1 koRpus-0.10-1/koRpus/tests/testthat/sample_text_TTRChar_dput.txt |only koRpus-0.10-1/koRpus/tests/testthat/sample_text_correcthyph_dput.txt |only koRpus-0.10-1/koRpus/tests/testthat/sample_text_hyphen_dput.txt | 62 - koRpus-0.10-1/koRpus/tests/testthat/test_tokenizing_POS_tagging.R | 32 koRpus-0.10-1/koRpus/tests/testthat/tokenized_single_token_dput.txt |only koRpus-0.10-1/koRpus/vignettes/koRpus_vignette.Rnw | 2 210 files changed, 2840 insertions(+), 2307 deletions(-)
Title: Functions Related to ICES Advice
Description: Functions that are related to the ICES advisory process.
Author: Arni Magnusson [aut, cre],
Anne Cooper [aut],
Colin Millar [ctb]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>
Diff between icesAdvice versions 1.2-0 dated 2017-02-10 and 1.3-0 dated 2017-03-02
DESCRIPTION | 14 +++++++------- MD5 | 32 +++++++++++++++++--------------- NAMESPACE | 1 + NEWS | 12 +++++++++++- R/Bpa.R | 12 ++++++------ R/DLS3.2.R | 40 ++++++++++++++++++++++++++-------------- R/Fpa.R | 12 ++++++------ R/icesAdvice-package.R | 8 ++++---- R/icesRound.R |only R/sigmaCI.R | 2 +- R/sigmaPA.R | 2 +- man/Bpa.Rd | 16 ++++++++-------- man/DLS3.2.Rd | 43 ++++++++++++++++++++++++++----------------- man/Fpa.Rd | 16 ++++++++-------- man/icesAdvice-package.Rd | 17 ++++++++--------- man/icesRound.Rd |only man/sigmaCI.Rd | 7 +++---- man/sigmaPA.Rd | 7 +++---- 18 files changed, 136 insertions(+), 105 deletions(-)
Title: Tools for Survey Statistics in Educational Assessment
Description:
Contains tools for survey statistics (especially in educational
assessment) for datasets with replication designs (jackknife,
bootstrap, replicate weights). Descriptive statistics, linear
and logistic regression, path models for manifest variables
with measurement error correction and two-level hierarchical
regressions for weighted samples are included. Statistical
inference can be conducted for multiply imputed datasets and
nested multiply imputed datasets.
This package is developed by BIFIE (Federal Institute for
Educational Research, Innovation and Development of the Austrian
School System; Salzburg, Austria).
Author:
BIFIE
Maintainer:
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between BIFIEsurvey versions 1.12-0 dated 2017-01-16 and 1.13-24 dated 2017-03-02
DESCRIPTION | 8 MD5 | 115 +-- R/BIFIE.BIFIEdata2datalist.R | 4 R/BIFIE.bifiedata2bifiecdata.R | 11 R/BIFIE.by.R | 4 R/BIFIE.correl.R | 4 R/BIFIE.crosstab.R | 4 R/BIFIE.data.boot.R | 2 R/BIFIE.data.jack.R | 16 R/BIFIE.data.transform.R | 25 R/BIFIE.derivedParameters.R | 9 R/BIFIE.ecdf.R | 9 R/BIFIE.freq.R | 4 R/BIFIE.hist.R | 10 R/BIFIE.linreg.R | 5 R/BIFIE.logistreg.R | 14 R/BIFIE.pathmodel.R | 12 R/BIFIE.twolevelreg.R | 5 R/BIFIE.univar.R | 10 R/BIFIE.univar.test.R | 6 R/BIFIE.waldtest.R | 17 R/BIFIE_NMI_inference_parameters.R | 13 R/BIFIE_by_helper_pureR.R | 10 R/RcppExports.R |only R/bifietable.R | 5 R/load.BIFIEdata.files.R | 53 - R/rubin_calc_df.R | 4 R/vcov.BIFIE.survey.R | 33 inst/NEWS | 653 +++++++++---------- man/BIFIE.BIFIEdata2BIFIEcdata.Rd | 11 man/BIFIE.by.Rd | 24 man/BIFIE.correl.Rd | 6 man/BIFIE.crosstab.Rd | 5 man/BIFIE.data.Rd | 17 man/BIFIE.data.boot.Rd | 4 man/BIFIE.data.jack.Rd | 32 man/BIFIE.data.select.Rd | 8 man/BIFIE.data.transform.Rd | 99 +- man/BIFIE.derivedParameters.Rd | 7 man/BIFIE.ecdf.Rd | 6 man/BIFIE.freq.Rd | 8 man/BIFIE.hist.Rd | 9 man/BIFIE.linreg.Rd | 36 - man/BIFIE.logistreg.Rd | 24 man/BIFIE.mva.Rd | 8 man/BIFIE.pathmodel.Rd | 11 man/BIFIE.twolevelreg.Rd | 42 - man/BIFIE.univar.Rd | 14 man/BIFIE.univar.test.Rd | 24 man/BIFIE.waldtest.Rd | 24 man/BIFIEsurvey-package.Rd | 10 man/bifietable.Rd | 2 man/data.pisaNLD.Rd | 19 man/data.timss1.Rd | 28 man/save.BIFIEdata.Rd | 34 - src/RcppExports.cpp |only src/init.c |only src/jack_dataprep.cpp | 313 ++------- src/univar.cpp | 1242 +++++++++---------------------------- src/univar_helpers.h | 472 ++++++-------- 60 files changed, 1381 insertions(+), 2223 deletions(-)
Title: Association Rule Classification
Description: Implements the Classification-based on
Association Rules (CBA) algorithm for association rule classification (ARC).
The package also contains several convenience methods that allow to automatically
set CBA parameters (minimum confidence, minimum support) and it also natively
handles numeric attributes by integrating a pre-discretization step.
The rule generation phase is handled by the 'arules' package.
Author: Tomas Kliegr [aut, cre]
Maintainer: Tomas Kliegr <kliegr@gmail.com>
Diff between arc versions 1.0 dated 2016-09-07 and 1.1 dated 2017-03-02
arc-1.0/arc/README.md |only arc-1.0/arc/man/RuleModel-class.Rd |only arc-1.0/arc/man/predict.RuleModel.Rd |only arc-1.0/arc/man/rulemodelAccuracy.Rd |only arc-1.1/arc/DESCRIPTION | 14 +-- arc-1.1/arc/MD5 | 44 ++++----- arc-1.1/arc/NAMESPACE | 7 - arc-1.1/arc/R/cba.R | 133 +++++++++++++++++++----------- arc-1.1/arc/R/m1prune.R | 29 ++++-- arc-1.1/arc/R/mdlp2.R | 27 +++--- arc-1.1/arc/R/toprules.R | 46 +++++++--- arc-1.1/arc/man/CBARuleModel-class.Rd |only arc-1.1/arc/man/CBARuleModelAccuracy.Rd |only arc-1.1/arc/man/applyCut.Rd | 3 arc-1.1/arc/man/applyCuts.Rd | 3 arc-1.1/arc/man/cba.Rd | 9 -- arc-1.1/arc/man/cbaCSV.Rd | 7 - arc-1.1/arc/man/cbaIris.Rd | 1 arc-1.1/arc/man/cbaIrisNumeric.Rd |only arc-1.1/arc/man/discrNumeric.Rd | 1 arc-1.1/arc/man/discretizeUnsupervised.Rd | 7 - arc-1.1/arc/man/getAppearance.Rd | 7 - arc-1.1/arc/man/mdlp2.Rd | 1 arc-1.1/arc/man/predict.CBARuleModel.Rd |only arc-1.1/arc/man/prune.Rd | 1 arc-1.1/arc/man/topRules.Rd | 3 arc-1.1/arc/tests/testthat/testiris.R | 2 27 files changed, 210 insertions(+), 135 deletions(-)
Title: Zelig Choice Models
Description: Add-on package for Zelig 5. Enables the use of a variety of logit
and probit regressions.
Author: Christine. Choirat [aut],
Christopher Gandrud [aut, cre],
James Honaker [aut],
Kosuke Imai [aut],
Gary King [aut],
Olivia Lau [aut]
Maintainer: Christopher Gandrud <zelig.zee@gmail.com>
Diff between ZeligChoice versions 0.9-3 dated 2017-02-06 and 0.9-4 dated 2017-03-02
ZeligChoice-0.9-3/ZeligChoice/NEWS |only ZeligChoice-0.9-4/ZeligChoice/DESCRIPTION | 12 +++--- ZeligChoice-0.9-4/ZeligChoice/MD5 | 8 ++-- ZeligChoice-0.9-4/ZeligChoice/NEWS.md |only ZeligChoice-0.9-4/ZeligChoice/R/model-obinchoice.R | 13 +++---- ZeligChoice-0.9-4/ZeligChoice/tests/testthat/test-ologit.R | 23 +++++++++++-- 6 files changed, 37 insertions(+), 19 deletions(-)
Title: Learn R, in R
Description: Use the R console as an interactive learning
environment. Users receive immediate feedback as they are guided through
self-paced lessons in data science and R programming.
Author: Sean Kross [aut, cre],
Nick Carchedi [aut],
Bill Bauer [aut],
Gina Grdina [aut],
Filip Schouwenaars [ctb],
Wush Wu [ctb]
Maintainer: Sean Kross <sean@seankross.com>
Diff between swirl versions 2.4.2 dated 2016-06-23 and 2.4.3 dated 2017-03-02
DESCRIPTION | 6 +++--- LICENSE | 2 +- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/languages.R | 8 +++++--- R/options.R | 3 ++- R/sysdata.rda |binary 7 files changed, 23 insertions(+), 14 deletions(-)
Title: Selection of Training Populations by Genetic Algorithm
Description: To be utilized to select a test data calibrated training population in high dimensional prediction problems and assumes that the explanatory variables are observed for all of the individuals. Once a "good" training set is identified, the response variable can be obtained only for this set to build a model for predicting the response in the test set. The algorithms in the package can be tweaked to solve some other subset selection problems.
Author: Deniz Akdemir
Maintainer: Deniz Akdemir <deniz.akdemir.work@gmail.com>
Diff between STPGA versions 3.0 dated 2016-08-09 and 4.0 dated 2017-03-02
STPGA-3.0/STPGA/R/STPGA_NoTest.R |only STPGA-3.0/STPGA/R/STPGA_Test.R |only STPGA-3.0/STPGA/man/AOPT.Rd |only STPGA-3.0/STPGA/man/CDMAX.Rd |only STPGA-3.0/STPGA/man/CDMAX0.Rd |only STPGA-3.0/STPGA/man/CDMAX2.Rd |only STPGA-3.0/STPGA/man/CDMEAN.Rd |only STPGA-3.0/STPGA/man/CDMEAN0.Rd |only STPGA-3.0/STPGA/man/CDMEAN2.Rd |only STPGA-3.0/STPGA/man/CDMEANMM.Rd |only STPGA-3.0/STPGA/man/DOPT.Rd |only STPGA-3.0/STPGA/man/GAUSSMEANMM.Rd |only STPGA-3.0/STPGA/man/GOPTPEV.Rd |only STPGA-3.0/STPGA/man/GOPTPEV2.Rd |only STPGA-3.0/STPGA/man/PEVMAX.Rd |only STPGA-3.0/STPGA/man/PEVMAX0.Rd |only STPGA-3.0/STPGA/man/PEVMAX2.Rd |only STPGA-3.0/STPGA/man/PEVMEAN.Rd |only STPGA-3.0/STPGA/man/PEVMEAN0.Rd |only STPGA-3.0/STPGA/man/PEVMEAN2.Rd |only STPGA-3.0/STPGA/man/PEVMEANMM.Rd |only STPGA-3.0/STPGA/man/STPGA_NoTest.Rd |only STPGA-3.0/STPGA/man/STPGA_Test.Rd |only STPGA-4.0/STPGA/DESCRIPTION | 13 STPGA-4.0/STPGA/MD5 | 101 ++-- STPGA-4.0/STPGA/NAMESPACE | 8 STPGA-4.0/STPGA/R/AOPT.R | 2 STPGA-4.0/STPGA/R/CDMAX.R | 3 STPGA-4.0/STPGA/R/CDMAX2.R | 2 STPGA-4.0/STPGA/R/CDMEAN.R | 1 STPGA-4.0/STPGA/R/CDMEAN2.R | 1 STPGA-4.0/STPGA/R/CDMEANMM.R | 2 STPGA-4.0/STPGA/R/DOPT.R | 6 STPGA-4.0/STPGA/R/EOPT.R |only STPGA-4.0/STPGA/R/GAUSSMEANMM.R | 2 STPGA-4.0/STPGA/R/GOPTPEV.R | 3 STPGA-4.0/STPGA/R/GOPTPEV2.R | 3 STPGA-4.0/STPGA/R/GenAlgForSubsetSelection.R | 285 ++++++------ STPGA-4.0/STPGA/R/GenAlgForSubsetSelectionNoTest.R | 405 ++++++------------ STPGA-4.0/STPGA/R/GenerateCrossesfromElites.R | 56 ++ STPGA-4.0/STPGA/R/PEVMAX.R | 1 STPGA-4.0/STPGA/R/PEVMAX2.R | 1 STPGA-4.0/STPGA/R/PEVMEAN.R | 1 STPGA-4.0/STPGA/R/PEVMEAN0.R | 6 STPGA-4.0/STPGA/R/PEVMEAN2.R | 1 STPGA-4.0/STPGA/R/PEVMEANMM.R | 3 STPGA-4.0/STPGA/R/makeonecross.R | 5 STPGA-4.0/STPGA/build |only STPGA-4.0/STPGA/data |only STPGA-4.0/STPGA/inst |only STPGA-4.0/STPGA/man/CRITERIA.Rd |only STPGA-4.0/STPGA/man/GenAlgForSubsetSelection.Rd | 231 ++++------ STPGA-4.0/STPGA/man/GenAlgForSubsetSelectionNoTest.Rd | 132 ++++- STPGA-4.0/STPGA/man/GenerateCrossesfromElites.Rd | 5 STPGA-4.0/STPGA/man/STPGA-package.Rd | 15 STPGA-4.0/STPGA/man/WheatData.Rd |only STPGA-4.0/STPGA/vignettes |only 57 files changed, 623 insertions(+), 671 deletions(-)
Title: Spatial Forecast Verification
Description: Spatial forecast verification arose from verifying high-resolution forecasts, where coarser-resolution models generally are favored even when a human forecaster finds the higher-resolution model to be considerably better. Most newly proposed methods, which largely come from image analysis, computer vision, and similar, are available, with more on the way.
Author: Eric Gilleland <EricG@ucar.edu>
Maintainer: Eric Gilleland <EricG@ucar.edu>
Diff between SpatialVx versions 0.6 dated 2016-12-29 and 0.6-1 dated 2017-03-02
DESCRIPTION | 8 +-- MD5 | 13 ++--- NAMESPACE | 4 + R/Vgrams.R | 117 ++++++++++++++++++++++++++++++++++++++++++++++ R/plot.matched.R | 65 ++++++++++++++++++++----- man/SpatialVx-internal.Rd | 2 man/minboundmatch.Rd | 2 man/variographier.Rd |only 8 files changed, 187 insertions(+), 24 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Multivariate mixed model solver for multiple random effects allowing the specification of variance covariance structures. ML/REML estimates are obtained using the Newton-Raphson (NR), Average Information (AI), Expectation-Maximization (EM), or Efficient Mixed Model Association (EMMA) algorithms. Designed for genomic prediction and genome wide association studies (GWAS) to include additive, dominance and epistatic relationship structures or other covariance structures in R, but also functional as a regular mixed model program. Multivariate models (multiple responses) can be fitted currently with NR, AI and EMMA algorithms allowing multiple random effects as well. Correlated residuals are no longer Covariance structures for the residual component are no longer supported.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 2.5 dated 2017-01-03 and 2.6 dated 2017-03-02
sommer-2.5/sommer/R/NRR.R |only sommer-2.5/sommer/R/Rstructures.R |only sommer-2.5/sommer/man/AR1.mat.Rd |only sommer-2.5/sommer/man/ARMA.mat.Rd |only sommer-2.5/sommer/man/CS.mat.Rd |only sommer-2.5/sommer/man/NRR.Rd |only sommer-2.6/sommer/CHANGELOG | 12 ++- sommer-2.6/sommer/DESCRIPTION | 10 +- sommer-2.6/sommer/MD5 | 42 +++++------- sommer-2.6/sommer/NAMESPACE | 2 sommer-2.6/sommer/R/atcg1234.R | 20 +++-- sommer-2.6/sommer/R/hdm.R | 111 +++++++++++++++++++------------- sommer-2.6/sommer/R/mmer.R | 17 ++-- sommer-2.6/sommer/R/mmer2.R | 81 +++++++++++------------ sommer-2.6/sommer/R/mmerSNOW.R | 30 ++++---- sommer-2.6/sommer/inst/doc/sommer.pdf |binary sommer-2.6/sommer/man/A.mat.Rd | 5 - sommer-2.6/sommer/man/atcg1234.Rd | 3 sommer-2.6/sommer/man/hdm.Rd | 4 - sommer-2.6/sommer/man/mmer.Rd | 20 ----- sommer-2.6/sommer/man/mmer2.Rd | 19 ----- sommer-2.6/sommer/man/nna.Rd | 6 - sommer-2.6/sommer/man/sommer-package.Rd | 4 - sommer-2.6/sommer/man/yates.oats.Rd | 9 -- sommer-2.6/sommer/vignettes/sommer.html | 16 ++-- 25 files changed, 202 insertions(+), 209 deletions(-)
Title: Statistical Analysis of Network Data with R
Description: Data sets for the book 'Statistical Analysis of
Network Data with R'.
Author: Eric D Kolaczyk, Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between sand versions 1.0.2 dated 2014-04-24 and 1.0.3 dated 2017-03-02
DESCRIPTION | 13 +++++++------ MD5 | 4 ++-- NAMESPACE | 3 +++ 3 files changed, 12 insertions(+), 8 deletions(-)
Title: Tools for Developing Diagnostic Messages
Description: A number of utilities for developing and maintaining error, warning,
and other messages in R packages, including checking for consistency across
messages, spell-checking messages, and building message translations into
various languages for purposes of localization.
Author: Thomas J. Leeper [aut, cre]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between msgtools versions 0.2.6 dated 2017-02-28 and 0.2.7 dated 2017-03-02
DESCRIPTION | 8 +- MD5 | 27 ++++--- NEWS.md | 6 + R/gettext.R | 2 R/install_translations.R | 67 ++++++++++++------- R/make_enquote_translation.R |only R/setlang.R | 2 build/vignette.rds |binary inst/doc/Tutorial.R | 3 inst/doc/Tutorial.Rmd | 4 - inst/doc/Tutorial.html | 150 +++++++++++++++++++++---------------------- inst/po/it |only po/R-it.po |only po/R-msgtools.pot | 14 ++-- tests/test-all.R | 2 vignettes/Tutorial.Rmd | 4 - 16 files changed, 155 insertions(+), 134 deletions(-)
Title: Wait for a Key Press in a Terminal
Description: Wait for a single key press at the 'R' prompt.
This works in terminals, but does not currently work
in the 'Windows' 'GUI', the 'OS X' 'GUI' ('R.app'),
in 'Emacs' 'ESS', in an 'Emacs' shell buffer or in
'R Studio'. In these cases 'keypress' stops with an
error message.
Author: Gábor Csárdi [aut, cre], Jon Griffiths [aut]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between keypress versions 1.0.0 dated 2015-06-06 and 1.1.1 dated 2017-03-02
DESCRIPTION | 12 + LICENSE | 4 MD5 | 23 ++- NAMESPACE | 4 R/keypress.R | 25 ++- inst/NEWS.md | 12 + inst/README.md | 15 +- inst/include |only man/has_keypress_support.Rd | 3 man/keypress.Rd | 24 ++- src/Makevars |only src/init.c |only src/keypress-unix.c |only src/keypress-win.c |only src/keypress.c | 294 +++++++++++--------------------------------- 15 files changed, 158 insertions(+), 258 deletions(-)
Title: The Iterative Signature Algorithm
Description: The ISA is a biclustering algorithm that finds modules
in an input matrix. A module or bicluster is a block of the
reordered input matrix.
Author: Gabor Csardi <csardi.gabor@gmail.com>
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between isa2 versions 0.3.4 dated 2015-04-08 and 0.3.5 dated 2017-03-02
isa2-0.3.4/isa2/inst/doc/ISA_parallel.pdf |only isa2-0.3.4/isa2/inst/doc/ISA_parallel.vignette |only isa2-0.3.4/isa2/inst/doc/ISA_tutorial.pdf |only isa2-0.3.4/isa2/inst/doc/ISA_tutorial.vignette |only isa2-0.3.5/isa2/DESCRIPTION | 8 ++++---- isa2-0.3.5/isa2/MD5 | 20 ++++++++------------ isa2-0.3.5/isa2/NAMESPACE | 7 ++++++- isa2-0.3.5/isa2/R/isa3.R | 12 ++++++------ isa2-0.3.5/isa2/R/ppa.R | 6 +++--- isa2-0.3.5/isa2/R/zzz.R | 2 -- isa2-0.3.5/isa2/man/isa.Rd | 2 ++ isa2-0.3.5/isa2/man/isa.biclust.Rd | 4 +++- isa2-0.3.5/isa2/src/isa.c | 14 ++++++++++++++ 13 files changed, 46 insertions(+), 29 deletions(-)
Title: Fit Hydraulic Vulnerability Curves
Description: Fits Weibull or sigmoidal models to percent loss conductivity (plc) curves as a function of plant water potential, computes confidence intervals of parameter estimates and predictions with bootstrap or parametric methods, and provides convenient plotting methods.
Author: Remko Duursma
Maintainer: Remko Duursma <remkoduursma@gmail.com>
Diff between fitplc versions 1.1-3 dated 2017-01-12 and 1.1-7 dated 2017-03-02
DESCRIPTION | 9 ++++--- MD5 | 10 ++++---- R/fitplc.R | 4 ++- R/plot.plcfit.R | 66 +++++++++++++++++++++++++++++++++-------------------- man/plot.plcfit.Rd | 21 ++++++++++------ tests |only 6 files changed, 69 insertions(+), 41 deletions(-)
Title: Event-Related Potential (ERP) Data Exploration Made Easy
Description: A set of user-friendly functions to aid in organizing, plotting
and analyzing event-related potential (ERP) data. Provides an easy-to-learn
method to explore ERP data. Should be useful to those without a background
in computer programming, and to those who are new to ERPs (or new to the
more advanced ERP software available). Emphasis has been placed on highly
automated processes using functions with as few arguments as possible.
Expects processed (cleaned) data.
Author: Travis Moore [aut, cre]
Maintainer: Travis Moore <travis.m.moore@vanderbilt.edu>
Diff between erp.easy versions 1.0.0 dated 2016-01-29 and 1.1.0 dated 2017-03-02
erp.easy-1.0.0/erp.easy/R/Filter.R |only erp.easy-1.0.0/erp.easy/man/erp.filter.Rd |only erp.easy-1.1.0/erp.easy/DESCRIPTION | 22 +++--- erp.easy-1.1.0/erp.easy/MD5 | 48 ++++++------- erp.easy-1.1.0/erp.easy/NAMESPACE | 2 erp.easy-1.1.0/erp.easy/NEWS.md | 98 +++++++++++++++++++++------- erp.easy-1.1.0/erp.easy/R/Build.R | 98 ++++++++++++++++++++++------ erp.easy-1.1.0/erp.easy/R/Butterfly.R | 2 erp.easy-1.1.0/erp.easy/R/Difference.R | 3 erp.easy-1.1.0/erp.easy/R/EasyLoad.R |only erp.easy-1.1.0/erp.easy/R/GrandavgPlot.R | 45 +++++++----- erp.easy-1.1.0/erp.easy/R/Individual.R | 44 +++++++++--- erp.easy-1.1.0/erp.easy/R/Load.R | 56 +++++++++++----- erp.easy-1.1.0/erp.easy/R/Means.R | 7 +- erp.easy-1.1.0/erp.easy/R/Peaks.R | 36 +++++----- erp.easy-1.1.0/erp.easy/R/erp.easy.R | 2 erp.easy-1.1.0/erp.easy/man/ERPdata.Rd | 3 erp.easy-1.1.0/erp.easy/man/butterfly.Rd | 8 +- erp.easy-1.1.0/erp.easy/man/dif.wave.Rd | 10 +- erp.easy-1.1.0/erp.easy/man/easy.load.Rd |only erp.easy-1.1.0/erp.easy/man/erp.easy.Rd | 7 +- erp.easy-1.1.0/erp.easy/man/grandaverage.Rd | 23 ++++-- erp.easy-1.1.0/erp.easy/man/individual.Rd | 38 ++++++---- erp.easy-1.1.0/erp.easy/man/load.data.Rd | 28 +++++--- erp.easy-1.1.0/erp.easy/man/m.measures.Rd | 10 +- erp.easy-1.1.0/erp.easy/man/mosaic.Rd | 4 - erp.easy-1.1.0/erp.easy/man/p.measures.Rd | 30 ++++---- 27 files changed, 414 insertions(+), 210 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-10 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-01 1.0.0