Title: Conversion of R Regression Output to LaTeX or HTML Tables
Description: Converts coefficients, standard errors, significance stars, and goodness-of-fit statistics of statistical models into LaTeX tables or HTML tables/MS Word documents or to nicely formatted screen output for the R console for easy model comparison. A list of several models can be combined in a single table. The output is highly customizable. New model types can be easily implemented.
Author: Philip Leifeld
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>
Diff between texreg versions 1.36.18 dated 2016-10-23 and 1.36.23 dated 2017-03-03
DESCRIPTION | 23 +- MD5 | 26 +- NAMESPACE | 15 + R/extract.R | 522 +++++++++++++++++++++++++++++++++++++++++++++++---- R/internal.R | 30 ++ R/plotreg.R | 2 R/texreg.R | 154 ++++++++------- build/vignette.rds |binary inst/doc/texreg.R | 46 ++-- inst/doc/texreg.Rnw | 36 ++- inst/doc/texreg.pdf |binary man/extract.Rd | 113 ++++++++++- man/texreg.Rd | 41 ++-- vignettes/texreg.Rnw | 36 ++- 14 files changed, 848 insertions(+), 196 deletions(-)
Title: Rcpp Bindings for Sequential Monte Carlo
Description: R access to the Sequential Monte Carlo Template Classes
by Johansen (Journal of Statistical Software, 2009, v30, i6) is provided.
At present, two additional examples have been added, and the first
example from the JSS paper has been extended. Further integration
and extensions are planned.
Author: Dirk Eddelbuettel and Adam M. Johansen
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSMC versions 0.1.3 dated 2014-05-02 and 0.1.5 dated 2017-03-03
ChangeLog | 27 +++++++++++++++++++++++++++ DESCRIPTION | 18 ++++++++---------- MD5 | 19 ++++++++++--------- NAMESPACE | 24 ++++++++++++++---------- R/bspfGaussianOptimal.R | 2 +- R/pfLineartBS.R | 2 +- R/pfNonlinBS.R | 2 +- README.md | 12 +++++++----- inst/NEWS.Rd | 24 ++++++++++++++++++++---- inst/include/sampler.h | 8 +++++--- src/init.c |only 11 files changed, 94 insertions(+), 44 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Education Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 1.4.0 dated 2017-01-31 and 1.5.0 dated 2017-03-03
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/cldList.r | 34 +++++++++++++++++++++++++++------- man/cldList.Rd | 31 ++++++++++++++++++++++++------- 4 files changed, 58 insertions(+), 21 deletions(-)
Title: BMRB Data Access and Visualization
Description: The Biological Magnetic Resonance Data Bank (BMRB,<http://www.bmrb.wisc.edu/>) collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR(Nuclear Magnetic Resonance) spectroscopic investigations of biological macromolecules and metabolites. This package provides an interface to BMRB database for easy data access and includes a minimal set of data visualization functions. Users are encouraged to make their own data visualizations using BMRB data.
Author: Kumaran Baskaran
Maintainer: Kumaran Baskaran<kbaskaran@bmrb.wisc.edu>
Diff between RBMRB versions 2.0.2 dated 2017-01-05 and 2.0.4 dated 2017-03-03
DESCRIPTION | 8 ++-- MD5 | 8 +++- NAMESPACE | 1 R/RBMRB.R | 77 ++++++++++++++++++++++++++++++++++++++++++++---- man/export_star_data.Rd |only man/makeRandomString.Rd |only 6 files changed, 82 insertions(+), 12 deletions(-)
Title: 'Neuroconductor' Base Package with Helper Functions for 'nifti'
Objects
Description: Base package for 'Neuroconductor', which includes many helper functions
that interact with objects of class 'nifti', implemented by
package 'oro.nifti', for reading/writing and also other manipulation functions.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between neurobase versions 1.9.2 dated 2017-01-06 and 1.13.2 dated 2017-03-03
DESCRIPTION | 8 ++++---- MD5 | 30 ++++++++++++++++++++---------- NAMESPACE | 6 ++++++ R/boxplot.nifti.R |only R/check_nifti.R | 12 ++++++++++++ R/cog.R | 5 +++-- R/getEmptyImageDimensions.R | 2 ++ R/remap_filename.R |only R/replace_outside_hull.R |only R/rescale_img.R | 3 ++- build/vignette.rds |binary inst/doc/neurobase.R |only inst/doc/neurobase.Rmd |only inst/doc/neurobase.html |only inst/doc/nifti_basics.html | 8 ++++---- man/boxplot.nifti.Rd |only man/check_nifti-methods.Rd | 4 ++++ man/cog.Rd | 5 +++-- man/remap_filename.Rd |only man/replace_outside_surface.Rd |only vignettes/neurobase.Rmd |only 21 files changed, 60 insertions(+), 23 deletions(-)
Title: Pearson Distribution System
Description: Implementation of the Pearson distribution system, including full
support for the (d,p,q,r)-family of functions for probability distributions
and fitting via method of moments and maximum likelihood method.
Author: Martin Becker [aut, cre],
Stefan Klößner [aut]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between PearsonDS versions 0.98 dated 2016-06-06 and 1.0 dated 2017-03-03
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NAMESPACE | 4 ++-- NEWS | 12 +++++++++++- R/pearsonIV.r | 43 ++++++++++++++++++++++++++----------------- R/zzz.r | 2 +- man/pearsonMSC.Rd | 2 +- src/pearson.c |only src/pearson.h | 26 ++++++++++++++++++++++++++ 9 files changed, 79 insertions(+), 33 deletions(-)
Title: Markov Decision Processes Toolbox
Description: The Markov Decision Processes (MDP) toolbox proposes functions related to the resolution of discrete-time Markov Decision Processes: finite horizon, value iteration, policy iteration, linear programming algorithms with some variants and also proposes some functions related to Reinforcement Learning.
Author: Iadine Chades, Guillaume Chapron, Marie-Josee Cros, Frederick Garcia, Regis Sabbadin
Maintainer: Guillaume Chapron <gchapron@carnivoreconservation.org>
Diff between MDPtoolbox versions 4.0.2 dated 2014-07-21 and 4.0.3 dated 2017-03-03
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + R/mdp_LP.r | 2 +- R/mdp_finite_horizon.r | 2 +- man/MDPtoolbox-package.Rd | 6 +++--- 6 files changed, 16 insertions(+), 15 deletions(-)
Title: An Implementation of Crawford's and Wright's Learning Curve
Production Functions
Description: Implements common learning curve production functions. It incorporates
Crawford's and Wright's learning curve functions to compute unit and cumulative
block estimates for time (or cost) of units along with an aggregate learning
curve. It also provides delta and error functions and some basic learning curve
plotting functions.along with functions to compute aggregated learning curves,
error rates, and to visualize learning curves.
Author: Bradley Boehmke [aut, cre],
Jason Freels [aut]
Maintainer: Bradley Boehmke <bradleyboehmke@gmail.com>
Diff between learningCurve versions 1.0 dated 2016-08-10 and 1.1.1 dated 2017-03-03
DESCRIPTION | 39 ++++++++++++++++++---------- MD5 | 62 ++++++++++++++++++++++++++------------------- R/aggregate_model.R | 5 ++- R/cumulative_avg_models.R | 10 ++++--- R/delta_and_error_models.R | 6 ++-- R/plot_functions.R | 20 +++++++------- R/slope_rate_models.R | 18 +++++-------- R/unit_models.R | 30 +++++++++++---------- README.md | 37 +++++++++++++++++++++++++- build |only inst |only man/agg_curve.Rd | 2 - man/ca_block.Rd | 2 - man/ca_unit.Rd | 2 - man/cum_error.Rd | 2 - man/delta.Rd | 2 - man/lc_rate.Rd | 4 +- man/lc_rate_est.Rd | 2 - man/natural_slope.Rd | 3 -- man/natural_slope_est.Rd | 3 -- man/plot_block_summary.Rd | 4 +- man/plot_delta.Rd | 2 - man/plot_unit_curve.Rd | 10 +++---- man/unit_block_summary.Rd | 2 - man/unit_cum_appx.Rd | 6 ++-- man/unit_cum_exact.Rd | 2 - man/unit_curve.Rd | 1 man/unit_midpoint.Rd | 2 - tests |only vignettes |only 30 files changed, 169 insertions(+), 109 deletions(-)
Title: High-Throughput Toxicokinetics
Description: Functions and data tables for simulation and statistical analysis of chemical toxicokinetics ("TK") using data obtained from relatively high throughput, in vitro studies. Both physiologically-based ("PBTK") and empirical (e.g., one compartment) "TK" models can be parameterized for several hundred chemicals and multiple species. These models are solved efficiently, often using compiled (C-based) code. A Monte Carlo sampler is included for simulating biological variability and measurement limitations. Functions are also provided for exporting "PBTK" models to "SBML" and "JARNAC" for use with other simulation software. These functions and data provide a set of tools for in vitro-in vivo extrapolation ("IVIVE") of high throughput screening data (e.g., ToxCast) to real-world exposures via reverse dosimetry (also known as "RTK").
Author: John Wambaugh and Robert Pearce, Schmitt method implementation by Jimena Davis, dynamic model adapted from code by R. Woodrow Setzer, Rabbit parameters from Nisha Sipes
Maintainer: John Wambaugh <wambaugh.john@epa.gov>
Diff between httk versions 1.4 dated 2016-02-02 and 1.5 dated 2017-03-03
DESCRIPTION | 15 +- MD5 | 240 +++++++++++++++++++++++++++------- NAMESPACE | 6 NEWS |only R/Calc_Hepatic_Clearance.r | 26 +-- R/Calc_elimination_rate.R | 2 R/Calc_total_clearance.R | 2 R/Calc_volume_of_distribution.R | 8 - R/Predict_partitioning_Schmitt.R | 2 R/add_chemtable.R | 22 ++- R/age_draw_smooth.R |only R/calc_analytic_css.R | 115 ++++++++++++++-- R/calc_chem_stats.R | 8 - R/calc_mc_css.R | 71 ++++++++-- R/calc_mc_oral_equiv.R | 2 R/calc_stats.R | 6 R/ckd_epi_eq.R |only R/convert_httk.R |only R/data.R |only R/draw_fup_clint.R |only R/estimate_gfr.R |only R/estimate_gfr_ped.R |only R/estimate_hematocrit.R |only R/gen_age_height_weight.R |only R/gen_height_weight.R |only R/get_cheminfo.R | 137 ++++++++++++------- R/get_gfr_category.R |only R/get_httk_params.R |only R/get_rblood2plasma.R |only R/get_weight_class.R |only R/hematocrit_infants.R |only R/httkpop.R |only R/httkpop_bio.R |only R/httkpop_direct_resample.R |only R/httkpop_direct_resample_inner.R |only R/httkpop_generate.R |only R/httkpop_virtual_indiv.R |only R/ionization_functions.R | 10 - R/monte_carlo.R | 5 R/r_left_censored_norm.R | 30 +++- R/solve_1comp.R | 31 ++-- R/solve_3comp.R | 37 +++-- R/solve_pbtk.R | 34 ++-- R/tissue_mass_functions.R |only R/tissue_masses_flows.R |only R/tissue_scale.R |only R/utils.R |only build |only data/Tables.RData |binary data/datalist |only data/httkpop.RData |only data/vignettes.RData |only inst |only man/Calc_elimination_rate.Rd | 4 man/Calc_ratioblood2plasma.Rd | 7 man/Calc_volume_of_distriution.Rd | 6 man/Obach2008.Rd |only man/PK_physiology_data.Rd | 4 man/Parameterize_PBTK.Rd | 4 man/Parameterize_SteadyState.Rd | 7 man/Wetmore2012.Rd |only man/add_chemtable.Rd | 10 - man/age_dist_smooth.Rd |only man/age_draw_smooth.Rd |only man/blood_mass_correct.Rd |only man/blood_weight.Rd |only man/bmiage.Rd |only man/body_surface_area.Rd |only man/bone_mass_age.Rd |only man/brain_mass.Rd |only man/calc_analytic_css.Rd | 9 - man/calc_css.Rd | 8 - man/calc_hepatic_clearance.Rd | 15 +- man/calc_mc_css.Rd | 93 ++++++++++++- man/calc_mc_oral_equiv.Rd | 12 - man/calc_stats.Rd | 6 man/calc_total_clearance.Rd | 4 man/chem_physical_and_invitro_data.Rd | 2 man/ckd_epi_eq.Rd |only man/convert_httk.Rd |only man/draw_fup_clint.Rd |only man/estimate_gfr.Rd |only man/estimate_gfr_ped.Rd |only man/estimate_hematocrit.Rd |only man/export_pbtk_jarnac.Rd | 2 man/export_pbtk_sbml.Rd | 2 man/gen_age_height_weight.Rd |only man/gen_height_weight.Rd |only man/get_cheminfo.Rd | 21 +- man/get_gfr_category.Rd |only man/get_httk_params.Rd |only man/get_rblood2plasma.Rd |only man/get_weight_class.Rd |only man/get_wetmore_cheminfo.Rd | 4 man/hematocrit_infants.Rd |only man/howgate.Rd |only man/httkpop.Rd |only man/httkpop_bio.Rd |only man/httkpop_direct_resample.Rd |only man/httkpop_direct_resample_inner.Rd |only man/httkpop_generate.Rd |only man/httkpop_virtual_indiv.Rd |only man/is_in_inclusive.Rd |only man/johnson.Rd |only man/kidney_mass_children.Rd |only man/liver_mass_children.Rd |only man/lung_mass_children.Rd |only man/mcnally_dt.Rd |only man/monte_carlo.Rd | 2 man/nhanes_mec_svy.Rd |only man/onlyp.Rd |only man/pancreas_mass_children.Rd |only man/parameterize_1comp.Rd | 4 man/parameterize_3comp.Rd | 5 man/r_left_censored_norm.Rd |only man/rfun.Rd |only man/skeletal_muscle_mass.Rd |only man/skeletal_muscle_mass_children.Rd |only man/skin_mass_bosgra.Rd |only man/solve_1comp_pk.Rd | 8 - man/solve_3comp_pbpk.Rd | 8 - man/solve_pbtk.Rd | 5 man/spleen_mass_children.Rd |only man/spline_heightweight.Rd |only man/spline_hematocrit.Rd |only man/spline_serumcreat.Rd |only man/tc.dt.Rd |only man/tissue_masses_flows.Rd |only man/tissue_scale.Rd |only man/wfl.Rd |only src/R_init_httk.c |only tests/cheminfo_test.Rout.save | 22 +-- tests/other_tests.R | 2 tests/other_tests.Rout.save | 68 ++++----- vignettes |only 135 files changed, 783 insertions(+), 370 deletions(-)
Title: Spatial Analysis of Phenotypic, Genotypic and Environmental Data
Description: Management and exploratory analysis of spatial data in population biology. Easy integration of information from multiple sources with 'ecogen' objects.
Author: Leandro Roser, Juan Vilardi, Beatriz Saidman and Laura Ferreyra
Maintainer: Leandro Roser <learoser@gmail.com>
Diff between EcoGenetics versions 1.2.0-3 dated 2016-07-15 and 1.2.1 dated 2017-03-03
EcoGenetics-1.2.0-3/EcoGenetics/R/eco.2geneland.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/eco.2genepop.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/eco.2gstudio.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/eco.2hierfstat.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/eco.2spagedi.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/eco.genepop2df.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/eco.order.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/ecogen.1OF5.definition.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/ecogen.2OF5.constructor.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/ecogen.3OF5.basic.methods.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/ecogen.4OF5.brackets.R |only EcoGenetics-1.2.0-3/EcoGenetics/R/ecogen.5OF5.get&set.R |only EcoGenetics-1.2.0-3/EcoGenetics/man/aue.filter.Rd |only EcoGenetics-1.2.0-3/EcoGenetics/man/eco.2geneland.Rd |only EcoGenetics-1.2.0-3/EcoGenetics/man/eco.2genepop.Rd |only EcoGenetics-1.2.0-3/EcoGenetics/man/eco.2gstudio.Rd |only EcoGenetics-1.2.0-3/EcoGenetics/man/eco.2hierfstat.Rd |only EcoGenetics-1.2.0-3/EcoGenetics/man/eco.2spagedi.Rd |only EcoGenetics-1.2.0-3/EcoGenetics/man/eco.genepop2df.Rd |only EcoGenetics-1.2.1/EcoGenetics/DESCRIPTION | 59 EcoGenetics-1.2.1/EcoGenetics/MD5 | 231 ++- EcoGenetics-1.2.1/EcoGenetics/NAMESPACE | 47 EcoGenetics-1.2.1/EcoGenetics/NEWS |only EcoGenetics-1.2.1/EcoGenetics/R/ZZZ.R | 2 EcoGenetics-1.2.1/EcoGenetics/R/auxiliar.R | 105 + EcoGenetics-1.2.1/EcoGenetics/R/classes.R | 39 EcoGenetics-1.2.1/EcoGenetics/R/control.R | 6 EcoGenetics-1.2.1/EcoGenetics/R/deprecated.R | 39 EcoGenetics-1.2.1/EcoGenetics/R/eco.alfreq.R | 11 EcoGenetics-1.2.1/EcoGenetics/R/eco.bearing.R |only EcoGenetics-1.2.1/EcoGenetics/R/eco.cbind.R | 32 EcoGenetics-1.2.1/EcoGenetics/R/eco.cormantel.R | 210 ++- EcoGenetics-1.2.1/EcoGenetics/R/eco.correlog.R | 264 +++- EcoGenetics-1.2.1/EcoGenetics/R/eco.forestplot.R | 74 - EcoGenetics-1.2.1/EcoGenetics/R/eco.formula.R |only EcoGenetics-1.2.1/EcoGenetics/R/eco.gsa.R | 176 ++ EcoGenetics-1.2.1/EcoGenetics/R/eco.kin.loiselle.R | 6 EcoGenetics-1.2.1/EcoGenetics/R/eco.lagweight.R | 22 EcoGenetics-1.2.1/EcoGenetics/R/eco.lmtree.R | 2 EcoGenetics-1.2.1/EcoGenetics/R/eco.lsa.R | 48 EcoGenetics-1.2.1/EcoGenetics/R/eco.malecot.R | 270 +++- EcoGenetics-1.2.1/EcoGenetics/R/eco.mantel.R | 77 + EcoGenetics-1.2.1/EcoGenetics/R/eco.merge.R | 20 EcoGenetics-1.2.1/EcoGenetics/R/eco.plotCorrelog.R |only EcoGenetics-1.2.1/EcoGenetics/R/eco.plotGlobal.R |only EcoGenetics-1.2.1/EcoGenetics/R/eco.plotLocal.R |only EcoGenetics-1.2.1/EcoGenetics/R/eco.plotWeight.R |only EcoGenetics-1.2.1/EcoGenetics/R/eco.post.geneland.R | 10 EcoGenetics-1.2.1/EcoGenetics/R/eco.rankplot.R | 91 + EcoGenetics-1.2.1/EcoGenetics/R/eco.rasterplot.R | 58 EcoGenetics-1.2.1/EcoGenetics/R/eco.rbind.R | 89 - EcoGenetics-1.2.1/EcoGenetics/R/eco.slide.con.R | 16 EcoGenetics-1.2.1/EcoGenetics/R/eco.slide.matrix.R | 16 EcoGenetics-1.2.1/EcoGenetics/R/eco.split.R |only EcoGenetics-1.2.1/EcoGenetics/R/eco.subset.R | 77 - EcoGenetics-1.2.1/EcoGenetics/R/eco.variogram.R | 25 EcoGenetics-1.2.1/EcoGenetics/R/eco.weight.R | 189 ++- EcoGenetics-1.2.1/EcoGenetics/R/ecogen.1OF6.definition.R |only EcoGenetics-1.2.1/EcoGenetics/R/ecogen.2OF6.constructor.R |only EcoGenetics-1.2.1/EcoGenetics/R/ecogen.3OF6.basic.methods.R |only EcoGenetics-1.2.1/EcoGenetics/R/ecogen.4OF6.brackets.R |only EcoGenetics-1.2.1/EcoGenetics/R/ecogen.5OF6.get&set.R |only EcoGenetics-1.2.1/EcoGenetics/R/ecogen.6OF6.converters.R |only EcoGenetics-1.2.1/EcoGenetics/R/int.crosscor.R | 13 EcoGenetics-1.2.1/EcoGenetics/R/int.geary.R | 13 EcoGenetics-1.2.1/EcoGenetics/R/int.genind.R | 14 EcoGenetics-1.2.1/EcoGenetics/R/int.jackknife.R | 4 EcoGenetics-1.2.1/EcoGenetics/R/int.joincount.R | 84 - EcoGenetics-1.2.1/EcoGenetics/R/int.kin.loiselle.R | 9 EcoGenetics-1.2.1/EcoGenetics/R/int.mantel.R | 41 EcoGenetics-1.2.1/EcoGenetics/R/int.moran.R | 16 EcoGenetics-1.2.1/EcoGenetics/R/int.multitable.R | 2 EcoGenetics-1.2.1/EcoGenetics/R/int.order.R |only EcoGenetics-1.2.1/EcoGenetics/R/plot.methods.R | 597 ---------- EcoGenetics-1.2.1/EcoGenetics/R/roxygen.auxiliar.R | 22 EcoGenetics-1.2.1/EcoGenetics/R/show_summary.methods.R | 50 EcoGenetics-1.2.1/EcoGenetics/README.md |only EcoGenetics-1.2.1/EcoGenetics/data/eco.test.RData |binary EcoGenetics-1.2.1/EcoGenetics/data/eco2.RData |binary EcoGenetics-1.2.1/EcoGenetics/data/eco3.RData |binary EcoGenetics-1.2.1/EcoGenetics/man/EcoGenetics-accessors.Rd | 43 EcoGenetics-1.2.1/EcoGenetics/man/EcoGenetics-package.Rd | 31 EcoGenetics-1.2.1/EcoGenetics/man/aue.dataAngle.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/aue.formatLine.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/aue.sort.Rd | 2 EcoGenetics-1.2.1/EcoGenetics/man/check_ecogen.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.IBD.Rd | 2 EcoGenetics-1.2.1/EcoGenetics/man/eco.bearing.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.cormantel.Rd | 43 EcoGenetics-1.2.1/EcoGenetics/man/eco.correlog-class.Rd | 4 EcoGenetics-1.2.1/EcoGenetics/man/eco.correlog-methods.Rd | 6 EcoGenetics-1.2.1/EcoGenetics/man/eco.correlog.Rd | 112 + EcoGenetics-1.2.1/EcoGenetics/man/eco.correlogB-class.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.formula.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.gsa.Rd | 63 - EcoGenetics-1.2.1/EcoGenetics/man/eco.lagweight-class.Rd | 2 EcoGenetics-1.2.1/EcoGenetics/man/eco.lagweight.Rd | 21 EcoGenetics-1.2.1/EcoGenetics/man/eco.listlsa-method.Rd | 7 EcoGenetics-1.2.1/EcoGenetics/man/eco.listw2ew.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.lmtree.Rd | 2 EcoGenetics-1.2.1/EcoGenetics/man/eco.lsa-methods.Rd | 2 EcoGenetics-1.2.1/EcoGenetics/man/eco.lsa.Rd | 45 EcoGenetics-1.2.1/EcoGenetics/man/eco.malecot.Rd | 57 EcoGenetics-1.2.1/EcoGenetics/man/eco.mantel.Rd | 42 EcoGenetics-1.2.1/EcoGenetics/man/eco.merge.Rd | 5 EcoGenetics-1.2.1/EcoGenetics/man/eco.multilsa-method.Rd | 40 EcoGenetics-1.2.1/EcoGenetics/man/eco.order.Rd | 37 EcoGenetics-1.2.1/EcoGenetics/man/eco.plotCorrelog.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.plotCorrelogB.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.plotGlobal.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.plotLocal.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.plotWeight.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.post.geneland.Rd | 8 EcoGenetics-1.2.1/EcoGenetics/man/eco.rasterplot-eco.multilsa-method.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.rasterplot.Rd | 16 EcoGenetics-1.2.1/EcoGenetics/man/eco.rbind.Rd | 28 EcoGenetics-1.2.1/EcoGenetics/man/eco.slide.con.Rd | 14 EcoGenetics-1.2.1/EcoGenetics/man/eco.slide.matrix.Rd | 14 EcoGenetics-1.2.1/EcoGenetics/man/eco.split.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/eco.subset.Rd | 6 EcoGenetics-1.2.1/EcoGenetics/man/eco.variogram.Rd | 12 EcoGenetics-1.2.1/EcoGenetics/man/eco.weight-class.Rd | 2 EcoGenetics-1.2.1/EcoGenetics/man/eco.weight.Rd | 136 +- EcoGenetics-1.2.1/EcoGenetics/man/ecogen-class.Rd | 8 EcoGenetics-1.2.1/EcoGenetics/man/ecogen-methods.Rd | 31 EcoGenetics-1.2.1/EcoGenetics/man/ecogen.Rd | 25 EcoGenetics-1.2.1/EcoGenetics/man/ecogen2geneland.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/ecogen2genepop.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/ecogen2genind.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/ecogen2gstudio.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/ecogen2hierfstat.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/ecogen2spagedi.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/ecolist-class.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/forestplot-methods.Rd | 11 EcoGenetics-1.2.1/EcoGenetics/man/genepop2ecogen.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/int.corvarToDeg.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/int.joincount.Rd | 9 EcoGenetics-1.2.1/EcoGenetics/man/int.kin.loiselle.Rd | 4 EcoGenetics-1.2.1/EcoGenetics/man/int.mantel.Rd | 2 EcoGenetics-1.2.1/EcoGenetics/man/int.multiplot.Rd | 13 EcoGenetics-1.2.1/EcoGenetics/man/int.order.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/is.wholenumber.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/pipe.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/plot-eco.gsa-ANY-method.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/rankplot-methods.Rd | 17 EcoGenetics-1.2.1/EcoGenetics/man/spagedi2ecogen.Rd |only EcoGenetics-1.2.1/EcoGenetics/man/sub-sub-ecogen-numeric-missing-method.Rd | 2 EcoGenetics-1.2.1/EcoGenetics/man/sub-subset-ecogen-numeric-missing-method.Rd | 2 148 files changed, 2473 insertions(+), 1629 deletions(-)
Title: Functions to Calculate Relatedness on Diploid Genetic Data
Description: Functions to calculate pairwise relatedness on diploid genetic datasets. Different estimators for relatedness can be combined with information on geographical distances. Information on heterozygosity, allele- and genotype diversity as well as genetic F-statistics are provided for each population.
Author: Philipp Kraemer [aut, cre],
Gabriele Gerlach [aut]
Maintainer: Philipp Kraemer <Philipp.Kraemer@uni-oldenburg.de>
Diff between Demerelate versions 0.9-2 dated 2017-01-23 and 0.9-3 dated 2017-03-03
DESCRIPTION | 8 - MD5 | 36 ++++---- R/Demerelate.R | 12 +- R/Emp.calc.R | 12 -- R/Fis.calc.R | 2 R/Lin.reg.distance.R | 188 +++++++++++++++++++++++----------------------- R/Loci.test.R | 5 - R/loiselle.R | 13 --- R/lxy.w.R | 1 R/morans.fin.R | 10 -- R/morans.w.R | 7 - R/relate.calc.R | 12 -- R/ritland.R | 6 - R/stat.pops.R | 39 +++------ R/wang.R | 8 - R/wang.compose.R | 5 - R/wang.fin.w.R | 4 R/wang.w.R | 4 man/Demerelate-package.Rd | 4 19 files changed, 150 insertions(+), 226 deletions(-)
Title: Tidy Quantitative Financial Analysis
Description: Bringing financial analysis to the 'tidyverse'. The 'tidyquant'
package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR'
and 'PerformanceAnalytics' package
functions and returns the objects in the tidy 'tibble' format. The main
advantage is being able to use quantitative functions with the 'tidyverse'
functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See
the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between tidyquant versions 0.3.0 dated 2017-01-21 and 0.4.0 dated 2017-03-03
tidyquant-0.3.0/tidyquant/R/tq_transform.R |only tidyquant-0.3.0/tidyquant/inst/doc/charting-with-tidyquant.R |only tidyquant-0.3.0/tidyquant/inst/doc/charting-with-tidyquant.Rmd |only tidyquant-0.3.0/tidyquant/inst/doc/charting-with-tidyquant.html |only tidyquant-0.3.0/tidyquant/inst/doc/tidyquant.R |only tidyquant-0.3.0/tidyquant/inst/doc/tidyquant.Rmd |only tidyquant-0.3.0/tidyquant/inst/doc/tidyquant.html |only tidyquant-0.3.0/tidyquant/man/tq_transform.Rd |only tidyquant-0.3.0/tidyquant/tests/testthat/test_tq_get_stock_index.R |only tidyquant-0.3.0/tidyquant/tests/testthat/test_tq_transform.R |only tidyquant-0.3.0/tidyquant/vignettes/charting-with-tidyquant.Rmd |only tidyquant-0.3.0/tidyquant/vignettes/tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/DESCRIPTION | 41 tidyquant-0.4.0/tidyquant/MD5 | 116 - tidyquant-0.4.0/tidyquant/NAMESPACE | 54 tidyquant-0.4.0/tidyquant/NEWS.md | 29 tidyquant-0.4.0/tidyquant/R/as_tibble.R | 24 tidyquant-0.4.0/tidyquant/R/as_xts.R | 26 tidyquant-0.4.0/tidyquant/R/coord_date.R | 12 tidyquant-0.4.0/tidyquant/R/data.R |only tidyquant-0.4.0/tidyquant/R/deprecated.R |only tidyquant-0.4.0/tidyquant/R/geom_bbands.R | 58 tidyquant-0.4.0/tidyquant/R/geom_chart.R | 36 tidyquant-0.4.0/tidyquant/R/geom_ma.R | 80 tidyquant-0.4.0/tidyquant/R/global_vars.R | 97 - tidyquant-0.4.0/tidyquant/R/scale_manual.R |only tidyquant-0.4.0/tidyquant/R/theme_tq.R |only tidyquant-0.4.0/tidyquant/R/tidyquant.R | 32 tidyquant-0.4.0/tidyquant/R/tq_get.R | 965 ++++------ tidyquant-0.4.0/tidyquant/R/tq_mutate.R | 207 +- tidyquant-0.4.0/tidyquant/R/tq_performance.R |only tidyquant-0.4.0/tidyquant/R/tq_portfolio.R |only tidyquant-0.4.0/tidyquant/R/tq_stock_list.R |only tidyquant-0.4.0/tidyquant/R/tq_transmute.R |only tidyquant-0.4.0/tidyquant/R/utils-dates.R | 6 tidyquant-0.4.0/tidyquant/R/utils-formatting.R |only tidyquant-0.4.0/tidyquant/README.md | 527 ----- tidyquant-0.4.0/tidyquant/build/vignette.rds |binary tidyquant-0.4.0/tidyquant/data |only tidyquant-0.4.0/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.R |only tidyquant-0.4.0/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.html |only tidyquant-0.4.0/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.R |only tidyquant-0.4.0/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.html |only tidyquant-0.4.0/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.R |only tidyquant-0.4.0/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.html |only tidyquant-0.4.0/tidyquant/inst/doc/TQ03-scaling-analysis-with-tidyquant.R |only tidyquant-0.4.0/tidyquant/inst/doc/TQ03-scaling-analysis-with-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/inst/doc/TQ03-scaling-analysis-with-tidyquant.html |only tidyquant-0.4.0/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.R |only tidyquant-0.4.0/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.html |only tidyquant-0.4.0/tidyquant/inst/doc/TQ04-charting-with-tidyquant.R |only tidyquant-0.4.0/tidyquant/inst/doc/TQ04-charting-with-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/inst/doc/TQ04-charting-with-tidyquant.html |only tidyquant-0.4.0/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.R |only tidyquant-0.4.0/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.html |only tidyquant-0.4.0/tidyquant/man/FANG.Rd |only tidyquant-0.4.0/tidyquant/man/as_tibble.Rd | 6 tidyquant-0.4.0/tidyquant/man/as_xts.Rd | 3 tidyquant-0.4.0/tidyquant/man/coord_x_date.Rd | 5 tidyquant-0.4.0/tidyquant/man/deprecated.Rd |only tidyquant-0.4.0/tidyquant/man/geom_bbands.Rd | 90 tidyquant-0.4.0/tidyquant/man/geom_chart.Rd | 46 tidyquant-0.4.0/tidyquant/man/geom_ma.Rd | 82 tidyquant-0.4.0/tidyquant/man/palette_tq.Rd |only tidyquant-0.4.0/tidyquant/man/scale_manual.Rd |only tidyquant-0.4.0/tidyquant/man/theme_tq.Rd |only tidyquant-0.4.0/tidyquant/man/tidyquant.Rd | 13 tidyquant-0.4.0/tidyquant/man/tq_get.Rd | 98 - tidyquant-0.4.0/tidyquant/man/tq_mutate.Rd | 56 tidyquant-0.4.0/tidyquant/man/tq_performance.Rd |only tidyquant-0.4.0/tidyquant/man/tq_portfolio.Rd |only tidyquant-0.4.0/tidyquant/man/tq_stock_list.Rd |only tidyquant-0.4.0/tidyquant/tests/testthat/test_tq_exchange.R |only tidyquant-0.4.0/tidyquant/tests/testthat/test_tq_get_compound_getters.R |only tidyquant-0.4.0/tidyquant/tests/testthat/test_tq_index.R |only tidyquant-0.4.0/tidyquant/tests/testthat/test_tq_mutate.R | 6 tidyquant-0.4.0/tidyquant/tests/testthat/test_tq_performance.R |only tidyquant-0.4.0/tidyquant/tests/testthat/test_tq_portfolio.R |only tidyquant-0.4.0/tidyquant/tests/testthat/test_tq_transmute.R |only tidyquant-0.4.0/tidyquant/vignettes/TQ00-introduction-to-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/vignettes/TQ01-core-functions-in-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/vignettes/TQ02-quant-integrations-in-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/vignettes/TQ03-scaling-and-modeling-with-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/vignettes/TQ04-charting-with-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/vignettes/TQ05-performance-analysis-with-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/vignettes/perfomance_analysis_workflow.png |only 91 files changed, 1249 insertions(+), 1466 deletions(-)
Title: Verbose Assertions for Tabular Data (Data.frames and
Data.tables)
Description: Simple, flexible, assertions on data.frame or data.table objects with verbose output for vetting. While other assertion packages apply towards more general use-cases, assertable is tailored towards tabular data. It includes functions to check variable names and values, whether the dataset contains all combinations of a given set of unique identifiers, and whether it is a certain length. In addition, assertable includes utility functions to check the existence of target files and to efficiently import multiple tabular data files into one data.table.
Author: Grant Nguyen
Maintainer: Grant Nguyen <gngu@uw.edu>
Diff between assertable versions 0.2.1 dated 2017-02-09 and 0.2.2 dated 2017-03-03
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/assert_ids.R | 8 +++++--- R/assert_values.R | 7 ++++--- R/import_files.R | 18 ++++++++---------- man/assert_ids.Rd | 6 ++++-- man/assert_values.Rd | 4 +++- 7 files changed, 33 insertions(+), 28 deletions(-)