Sat, 18 Mar 2017

Package V8 updated to version 1.3 with previous version 1.2 dated 2016-11-28

Title: Embedded JavaScript Engine for R
Description: An R interface to Google's open source JavaScript engine. V8 is written in C++ and implements ECMAScript as specified in ECMA-262, 5th edition. In addition, this package implements typed arrays as specified in ECMA 6 used for high-performance computing and libraries compiled with 'emscripten'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between V8 versions 1.2 dated 2016-11-28 and 1.3 dated 2017-03-18

 DESCRIPTION        |   14 +++++++-------
 LICENSE            |    2 +-
 MD5                |   22 ++++++++++++----------
 NEWS               |    4 ++++
 build/vignette.rds |binary
 cleanup            |only
 configure          |   14 ++++----------
 inst/doc/npm.Rmd   |    2 +-
 man/JS.Rd          |    1 -
 man/V8.Rd          |    4 ++--
 src/Makevars.win   |    2 +-
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 vignettes/npm.Rmd  |    2 +-
 13 files changed, 33 insertions(+), 34 deletions(-)

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Package sodium updated to version 1.0 with previous version 0.4 dated 2016-07-06

Title: A Modern and Easy-to-Use Crypto Library
Description: Bindings to 'libsodium': a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more. Sodium uses curve25519, a state-of-the-art Diffie-Hellman function by Daniel Bernstein, which has become very popular after it was discovered that the NSA had backdoored Dual EC DRBG.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between sodium versions 0.4 dated 2016-07-06 and 1.0 dated 2017-03-18

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 sodium-1.0/sodium/LICENSE                 |    2 -
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 sodium-1.0/sodium/inst/doc/crypto101.html |   33 ++++++++++---------
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 sodium-1.0/sodium/inst/doc/intro.html     |   27 +++++++++------
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 sodium-1.0/sodium/man/keygen.Rd           |    1 
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 sodium-1.0/sodium/man/password.Rd         |    3 -
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 sodium-1.0/sodium/man/symmetric.Rd        |    3 -
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 sodium-1.0/sodium/tools/winlibs.R         |    6 +--
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 28 files changed, 102 insertions(+), 127 deletions(-)

More information about sodium at CRAN
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Package future.BatchJobs updated to version 0.14.0 with previous version 0.13.1 dated 2016-10-21

Title: A Future API for Parallel and Distributed Processing using BatchJobs
Description: Implements of the Future API on top of the 'BatchJobs' package. This allows you to process futures, as defined by the 'future' package, in parallel out of the box, not only on your local machine or ad-hoc cluster of machines, but also via high-performance compute ('HPC') job schedulers such as 'LFS', 'OpenLava', 'Slurm', 'SGE', and 'TORQUE' / 'PBS', e.g. 'y <- future_lapply(files, FUN = process)'.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>

Diff between future.BatchJobs versions 0.13.1 dated 2016-10-21 and 0.14.0 dated 2017-03-18

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 future.BatchJobs-0.14.0/future.BatchJobs/tests/dotdotdot.R                       |    2 
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 future.BatchJobs-0.14.0/future.BatchJobs/tests/incl/start,load-only.R            |    2 
 future.BatchJobs-0.14.0/future.BatchJobs/tests/nbrOfWorkers.R                    |   38 
 47 files changed, 553 insertions(+), 1043 deletions(-)

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Package brotli updated to version 1.0 with previous version 0.8 dated 2016-08-01

Title: A Compression Format Optimized for the Web
Description: A lossless compressed data format that uses a combination of the LZ77 algorithm and Huffman coding. Brotli is similar in speed to deflate (gzip) but offers more dense compression.
Author: Jeroen Ooms [aut, cre], Google, Inc [aut, cph] (Brotli C++ library)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between brotli versions 0.8 dated 2016-08-01 and 1.0 dated 2017-03-18

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 brotli-1.0/brotli/build/vignette.rds         |binary
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 14 files changed, 45 insertions(+), 1061 deletions(-)

More information about brotli at CRAN
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Package brant updated to version 0.1-1 with previous version 0.1-0 dated 2017-03-18

Title: Test for Parallel Regression Assumption
Description: Tests the parallel regression assumption for ordinal logit models generated with the function polr() from the package 'MASS'.
Author: Benjamin Schlegel [aut,cre], Marco Steenbergen [aut]
Maintainer: Benjamin Schlegel <kontakt@benjaminschlegel.ch>

Diff between brant versions 0.1-0 dated 2017-03-18 and 0.1-1 dated 2017-03-18

 DESCRIPTION  |   12 ++++++------
 MD5          |    4 ++--
 man/brant.Rd |    2 +-
 3 files changed, 9 insertions(+), 9 deletions(-)

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Package webp updated to version 0.3 with previous version 0.2 dated 2015-12-30

Title: A New Format for Lossless and Lossy Image Compression
Description: Lossless webp images are 26% smaller in size compared to PNG. Lossy webp images are 25-34% smaller in size compared to JPEG. This package reads and writes webp images into a 3 (rgb) or 4 (rgba) channel bitmap array using conventions from the 'jpeg' and 'png' packages.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between webp versions 0.2 dated 2015-12-30 and 0.3 dated 2017-03-18

 DESCRIPTION      |   15 ++++++++-------
 LICENSE          |    2 +-
 MD5              |   18 +++++++++++-------
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 12 files changed, 34 insertions(+), 31 deletions(-)

More information about webp at CRAN
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Package pdftools updated to version 1.1 with previous version 1.0 dated 2016-12-03

Title: Text Extraction and Rendering of PDF Documents
Description: Utilities based on 'libpoppler' for extracting text, fonts, attachments and metadata from a pdf file. Also implements rendering of PDF to bitmaps on supported platforms.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between pdftools versions 1.0 dated 2016-12-03 and 1.1 dated 2017-03-18

 DESCRIPTION            |   12 ++++++------
 LICENSE                |    2 +-
 MD5                    |   15 ++++++++-------
 NEWS                   |    3 +++
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 9 files changed, 23 insertions(+), 50 deletions(-)

More information about pdftools at CRAN
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New package OSCV with initial version 1.0
Package: OSCV
Title: One-Sided Cross-Validation
Version: 1.0
Author: Olga Savchuk
Maintainer: Olga Savchuk <olga.y.savchuk@gmail.com>
Description: Functions for implementing different versions of the OSCV method in the kernel regression and density estimation frameworks. The package mainly supports the following articles: (1) Savchuk, O.Y., Hart, J.D. (2017). Fully robust one-sided cross-validation for regression functions. Computational Statistics, <doi:10.1007/s00180-017-0713-7> and (2) Savchuk, O.Y. (2017). One-sided cross-validation for nonsmooth density functions, <arXiv:1703.05157>.
Depends: R (>= 3.1.1), mc2d
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-03-18 13:52:43 UTC; olgay
Repository: CRAN
Date/Publication: 2017-03-18 17:51:59 UTC

More information about OSCV at CRAN
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Package networkD3 updated to version 0.4 with previous version 0.3 dated 2017-02-16

Title: D3 JavaScript Network Graphs from R
Description: Creates 'D3' 'JavaScript' network, tree, dendrogram, and Sankey graphs from 'R'.
Author: J.J. Allaire [aut], Peter Ellis [ctb], Christopher Gandrud [aut, cre], Kevin Kuo [ctb], B.W. Lewis [ctb], Jonathan Owen [ctb], Kenton Russell [aut], Jennifer Rogers [ctb], Charles Sese [ctb], CJ Yetman [aut]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>

Diff between networkD3 versions 0.3 dated 2017-02-16 and 0.4 dated 2017-03-18

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 networkD3-0.4/networkD3/R/forceNetwork.R                    |   14 +-
 networkD3-0.4/networkD3/R/sankeyNetwork.R                   |    2 
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 networkD3-0.4/networkD3/README.md                           |    4 
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Package mongolite updated to version 1.1 with previous version 1.0 dated 2017-03-01

Title: Fast and Simple 'MongoDB' Client for R
Description: High-performance 'MongoDB' client based on 'libmongoc' and 'jsonlite'. Includes support for aggregation, indexing, map-reduce, streaming, encryption, enterprise authentication. The online user manual provides an overview of the available methods in the package: <https://jeroen.github.io/mongolite/>.
Author: Jeroen Ooms [aut, cre], MongoDB, Inc [cph] (Author of mongo-c-driver)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between mongolite versions 1.0 dated 2017-03-01 and 1.1 dated 2017-03-18

 DESCRIPTION                          |   12 +--
 MD5                                  |   28 ++++-----
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 15 files changed, 181 insertions(+), 72 deletions(-)

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Package icenReg updated to version 2.0.0 with previous version 1.3.6 dated 2016-09-03

Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports Cox-PH, proportional odds, and accelerated failure time models. Allows for both semi and fully parametric models (parametric only for accelerated failure time models). Includes functions for easy visual diagnostics of model fits and imputation of censored data.
Author: Clifford Anderson-Bergman; uses Marloes Maathuis's HeightMap algorithm (MLEcens::reduc)
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>

Diff between icenReg versions 1.3.6 dated 2016-09-03 and 2.0.0 dated 2017-03-18

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New package FuzzyNumbers.Ext.2 with initial version 1.0
Package: FuzzyNumbers.Ext.2
Type: Package
Title: Apply Two Fuzzy Numbers on a Monotone Function
Version: 1.0
Date: 2017-03-16
Author: Abbas Parchami (Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran)
Maintainer: Abbas Parchami <parchami@uk.ac.ir>
Description: One can easily draw the membership function of f(x,y) by package 'FuzzyNumbers.Ext.2' in which f(.,.) is supposed monotone and x and y are two fuzzy numbers. This work is possible using function f2apply() which is an extension of function fapply() from Package 'FuzzyNumbers' for two-variable monotone functions.
License: LGPL (>= 3)
Imports: FuzzyNumbers
NeedsCompilation: no
Packaged: 2017-03-17 13:48:15 UTC; parchami
Repository: CRAN
Date/Publication: 2017-03-18 17:51:58 UTC

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Package filesstrings updated to version 0.3.2 with previous version 0.3.1 dated 2017-02-23

Title: Handy String and File Manipulation
Description: Handy string and file processing and manipulation tools. Built on top of the functionality of 'stringr'. Good for those who like to do all of their file and string manipulation from within R.
Author: Rory Nolan [aut, cre, cph], Jim Hester [ctb], Sergi Padilla-Parra [ths]
Maintainer: Rory Nolan <rorynoolan@gmail.com>

Diff between filesstrings versions 0.3.1 dated 2017-02-23 and 0.3.2 dated 2017-03-18

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 filesstrings-0.3.2/filesstrings/DESCRIPTION                   |   18 ++-
 filesstrings-0.3.2/filesstrings/MD5                           |   51 ++++------
 filesstrings-0.3.2/filesstrings/NAMESPACE                     |    3 
 filesstrings-0.3.2/filesstrings/NEWS.md                       |   10 +
 filesstrings-0.3.2/filesstrings/R/RcppExports.R               |    6 -
 filesstrings-0.3.2/filesstrings/R/files.R                     |   13 +-
 filesstrings-0.3.2/filesstrings/R/strings.R                   |   45 ++------
 filesstrings-0.3.2/filesstrings/R/utils.R                     |   10 -
 filesstrings-0.3.2/filesstrings/README.md                     |   13 +-
 filesstrings-0.3.2/filesstrings/build/vignette.rds            |binary
 filesstrings-0.3.2/filesstrings/inst/doc/files.html           |    4 
 filesstrings-0.3.2/filesstrings/inst/doc/strings.html         |    4 
 filesstrings-0.3.2/filesstrings/man/AllEqual.Rd               |    6 -
 filesstrings-0.3.2/filesstrings/man/BeforeLastDot.Rd          |    9 -
 filesstrings-0.3.2/filesstrings/man/CanBeNumeric.Rd           |    2 
 filesstrings-0.3.2/filesstrings/man/CharListElemsNthElem.Rd   |    6 -
 filesstrings-0.3.2/filesstrings/man/CreateDirsIfNotThere.Rd   |    6 -
 filesstrings-0.3.2/filesstrings/man/ExtractNumbers.Rd         |    2 
 filesstrings-0.3.2/filesstrings/man/GiveExt.Rd                |only
 filesstrings-0.3.2/filesstrings/man/LocateBraces.Rd           |    4 
 filesstrings-0.3.2/filesstrings/man/MergeTablesOnDisk.Rd      |    4 
 filesstrings-0.3.2/filesstrings/man/PutInPos.Rd               |    2 
 filesstrings-0.3.2/filesstrings/man/RemoveDirs.Rd             |    2 
 filesstrings-0.3.2/filesstrings/src/strings.cc                |    6 -
 filesstrings-0.3.2/filesstrings/tests/testthat/test_files.R   |   12 +-
 filesstrings-0.3.2/filesstrings/tests/testthat/test_strings.R |   15 --
 28 files changed, 126 insertions(+), 127 deletions(-)

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New package exampletestr with initial version 0.3.0
Package: exampletestr
Type: Package
Title: Help for Writing Tests Based on Function Examples
Version: 0.3.0
Authors@R: c(person("Rory", "Nolan", email = "rorynoolan@gmail.com", role = c("aut", "cre")), person("Sergi", "Padilla-Parra", email = "spadilla@well.ox.ac.uk", role = c("ths")))
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Description: Take the examples written in your documentation of functions and use them to create shells (skeletons which must be manually completed by the user) of test files to be tested with the 'testthat' package. Documentation must be done with 'roxygen2'.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: filesstrings, magrittr, stringr, BBmisc, devtools
RoxygenNote: 6.0.1
Suggests: testthat, covr, knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-03-18 17:12:34 UTC; rnolan
Author: Rory Nolan [aut, cre], Sergi Padilla-Parra [ths]
Repository: CRAN
Date/Publication: 2017-03-18 17:52:04 UTC

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Package compound.Cox updated to version 3.3 with previous version 3.2 dated 2017-02-17

Title: Estimation, Gene Selection, and Survival Prediction Based on the Compound Covariate Method Under the Cox Proportional Hazard Model
Description: Estimation, gene selection, and survival prediction based on the compound covariate method under the Cox model with high-dimensional gene expressions. Available are survival data for non-small-cell lung cancer patients with gene expressions (Chen et al 2007 New Engl J Med) <DOI:10.1056/NEJMoa060096>, statistical methods in Emura et al (2012 PLoS ONE) <DOI:10.1371/journal.pone.0047627> and Emura & Chen (2016 Stat Methods Med Res) <DOI:10.1177/0962280214533378>. Algorithms for generating correlated gene expressions are also available.
Author: Takeshi Emura, Hsuan-Yu Chen, Yi-Hau Chen
Maintainer: Takeshi Emura <takeshiemura@gmail.com>

Diff between compound.Cox versions 3.2 dated 2017-02-17 and 3.3 dated 2017-03-18

 DESCRIPTION                 |    8 ++++----
 MD5                         |   14 ++++++++------
 R/uni.select.R              |only
 man/cindex.CV.Rd            |    1 +
 man/compound.Cox-package.Rd |    6 ++++--
 man/compound.reg.Rd         |    2 +-
 man/dependCox.reg.CV.Rd     |    2 +-
 man/dependCox.reg.Rd        |    2 +-
 man/uni.selection.Rd        |only
 9 files changed, 20 insertions(+), 15 deletions(-)

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New package brant with initial version 0.1-0
Package: brant
Type: Package
Title: Test for Parallel Regression Assumption
Version: 0.1-0
Date: 2017-03-16
Author: Benjamin Schlegel [aut,cre], Marco Steenbergen [aut]
Maintainer: Benjamin Schlegel <kontakt@benjaminschlegel.ch>
Description: Tests the parallel regression assumption for ordinal logit models generated with the function polr() from the package MASS.
License: GPL (>= 2)
Depends: R (>= 3.1.0)
Imports: MASS
URL: https://benjaminschlegel.ch/r/glm.predict/
NeedsCompilation: no
Packaged: 2017-03-18 08:47:22 UTC; schlegel
Repository: CRAN
Date/Publication: 2017-03-18 17:52:01 UTC

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Package PDQutils updated to version 0.1.6 with previous version 0.1.5 dated 2016-09-20

Title: PDQ Functions via Gram Charlier, Edgeworth, and Cornish Fisher Approximations
Description: A collection of tools for approximating the 'PDQ' functions (respectively, the cumulative distribution, density, and quantile) of probability distributions via classical expansions involving moments and cumulants.
Author: Steven E. Pav [aut, cre]
Maintainer: Steven E. Pav <shabbychef@gmail.com>

Diff between PDQutils versions 0.1.5 dated 2016-09-20 and 0.1.6 dated 2017-03-18

 DESCRIPTION            |    8 ++++----
 MD5                    |   24 +++++++++++++++---------
 R/PDQutils.r           |    6 ++++++
 R/moments.r            |   16 +++++++++++-----
 README.md              |   12 ++++++------
 build/vignette.rds     |binary
 inst/doc/PDQutils.pdf  |binary
 man/NEWS.Rd            |    8 ++++++++
 man/cumulant2moment.Rd |    5 +++--
 man/moment2cumulant.Rd |   13 ++++++++++---
 tools                  |only
 11 files changed, 63 insertions(+), 29 deletions(-)

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Package MMDai updated to version 1.2.0 with previous version 1.1.0 dated 2017-03-08

Title: Multivariate Multinomial Distribution Approximation and Imputation for Incomplete Data
Description: Fit incomplete categorical data with infinite mixture of multinomial distribution (Dunson and Xing (2009) <DOI:10.1198/jasa.2009.tm08439>). Perform efficient missing data imputation and other statistical inference based on joint distribution estimation.
Author: Chaojie Wang
Maintainer: Chaojie Wang <wang910930@163.com>

Diff between MMDai versions 1.1.0 dated 2017-03-08 and 1.2.0 dated 2017-03-18

 DESCRIPTION        |    6 +++---
 MD5                |    8 +++++---
 NAMESPACE          |    1 +
 R/SignTest.R       |only
 data/MovieRate.rda |binary
 man/SignTest.Rd    |only
 6 files changed, 9 insertions(+), 6 deletions(-)

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New package iMediate with initial version 0.2
Package: iMediate
Type: Package
Title: Methods for Mediation Analysis
Version: 0.2
Date: 2017-03-15
Author: Dr. Kai Wang
Maintainer: Kai Wang <kai-wang@uiowa.edu>
Depends:
Imports: mediation
Description: Implements likelihood based methods for mediation analysis proposed in Wang (2016) and Wang (2017).
License: GPL (>= 2)
LazyLoad: yes
NeedsCompilation: no
Packaged: 2017-03-18 01:03:55 UTC; kaiwang
Repository: CRAN
Date/Publication: 2017-03-18 08:34:35 UTC

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