Title: Plot Categorical Data Using Quasirandom Noise and Density
Estimates
Description: Generate a violin point plot, a combination of a violin/histogram
plot and a scatter plot by offsetting points within a category based on their
density using quasirandom noise.
Author: Scott Sherrill-Mix, Erik Clarke
Maintainer: Scott Sherrill-Mix <shescott@upenn.edu>
Diff between vipor versions 0.4.4 dated 2016-10-05 and 0.4.5 dated 2017-03-22
DESCRIPTION | 10 +++++----- MD5 | 39 +++++++++++++++++++++------------------ README.md | 6 +++--- build/vignette.rds |binary man/aveWithArgs.Rd | 1 - man/counties.Rd | 1 - man/digits2number.Rd | 1 - man/generatePermuteString.Rd | 1 - man/integrations.Rd | 1 - man/number2digits.Rd | 1 - man/offsetX.Rd | 3 +-- man/permute.Rd | 1 - man/topBottomDistribute.Rd | 1 - man/tukeyPermutes.Rd | 1 - man/tukeyT.Rd | 1 - man/tukeyTexture.Rd | 1 - man/vanDerCorput.Rd | 1 - man/vipor.Rd | 7 +++---- man/vpPlot.Rd | 1 - tools |only 20 files changed, 33 insertions(+), 45 deletions(-)
Title: Stacked Species Distribution Modelling
Description: Allows to map species richness and endemism based on stacked
species distribution models (SSDM). Individuals SDMs can be created using a
single or multiple algorithms (ensemble SDMs). For each species, an SDM can
yield a habitat suitability map, a binary map, a between-algorithm variance
map, and can assess variable importance, algorithm accuracy, and between-
algorithm correlation. Methods to stack individual SDMs include summing
individual probabilities and thresholding then summing. Thresholding can be
based on a specific evaluation metric or by drawing repeatedly from a Bernoulli
distribution. The SSDM package also provides a user-friendly interface.
Author: Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Philippe Birnbaum
Maintainer: Sylvain Schmitt <sylvain.schmitt@agroparistech.fr>
Diff between SSDM versions 0.2.1 dated 2017-03-22 and 0.2.2 dated 2017-03-22
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 9 +++++++-- R/gui.R | 2 +- README.md | 2 +- inst/shiny/gui/ui.R | 1 + 6 files changed, 18 insertions(+), 12 deletions(-)
Title: Rarefaction Tool Kit
Description: Rarefy data, calculate diversity and plot the results.
Author: Paul Saary, Falk Hildebrand
Maintainer: Paul Saary <rtk@paulsaary.de>
Diff between rtk versions 0.2.4.1 dated 2017-02-22 and 0.2.5 dated 2017-03-22
DESCRIPTION | 8 MD5 | 21 R/rarefaction.R | 86 +- build/partial.rdb |binary inst |only src/IO.cpp | 1716 ++++++++++++++++++++++++++-------------------------- src/IO.h | 24 src/RRare.cpp | 652 ++++++++++--------- src/RRare.h | 42 - src/RcppExports.cpp | 4 src/Rwrapper.cpp | 188 +++-- src/options.h | 29 12 files changed, 1481 insertions(+), 1289 deletions(-)
Title: Read Rectangular Text Data
Description: The goal of 'readr' is to provide a fast and friendly way to read
rectangular data (like 'csv', 'tsv', and 'fwf'). It is designed to flexibly
parse many types of data found in the wild, while still cleanly failing when
data unexpectedly changes.
Author: Hadley Wickham [aut],
Jim Hester [aut, cre],
Romain Francois [aut],
R Core Team [ctb] (Date time code adapted from R),
RStudio [cph, fnd],
Jukka Jylänki [ctb, cph] (grisu3 implementation),
Mikkel Jørgensen [ctb, cph] (grisu3 implementation)
Maintainer: Jim Hester <james.hester@rstudio.com>
Diff between readr versions 1.0.0 dated 2016-08-03 and 1.1.0 dated 2017-03-22
readr-1.0.0/readr/R/input.R |only readr-1.0.0/readr/R/read_lines.R |only readr-1.0.0/readr/R/read_rds.R |only readr-1.0.0/readr/R/write_lines.R |only readr-1.0.0/readr/inst/doc/column-types.R |only readr-1.0.0/readr/inst/doc/column-types.Rmd |only readr-1.0.0/readr/inst/doc/column-types.html |only readr-1.0.0/readr/inst/extdata/compound.log |only readr-1.0.0/readr/man/write_lines.Rd |only readr-1.0.0/readr/man/write_rds.Rd |only readr-1.0.0/readr/src/DateTime.cpp |only readr-1.0.0/readr/vignettes/column-types.Rmd |only readr-1.1.0/readr/DESCRIPTION | 41 +- readr-1.1.0/readr/MD5 | 223 +++++++------- readr-1.1.0/readr/NAMESPACE | 10 readr-1.1.0/readr/NEWS.md | 45 ++ readr-1.1.0/readr/R/RcppExports.R | 22 - readr-1.1.0/readr/R/callback.R | 31 + readr-1.1.0/readr/R/col_types.R | 45 ++ readr-1.1.0/readr/R/collectors.R | 115 +++---- readr-1.1.0/readr/R/count_fields.R | 8 readr-1.1.0/readr/R/date-symbols.R | 6 readr-1.1.0/readr/R/encoding.R | 31 + readr-1.1.0/readr/R/example.R | 3 readr-1.1.0/readr/R/file.R |only readr-1.1.0/readr/R/lines.R |only readr-1.1.0/readr/R/locale.R | 15 readr-1.1.0/readr/R/problems.R | 18 - readr-1.1.0/readr/R/rds.R |only readr-1.1.0/readr/R/read_delim.R | 100 +++--- readr-1.1.0/readr/R/read_fwf.R | 94 +++-- readr-1.1.0/readr/R/read_lines_chunked.R | 3 readr-1.1.0/readr/R/read_log.R | 5 readr-1.1.0/readr/R/read_table.R | 56 ++- readr-1.1.0/readr/R/readr.R |only readr-1.1.0/readr/R/source.R | 52 ++- readr-1.1.0/readr/R/tokenizer.R | 30 + readr-1.1.0/readr/R/type_convert.R | 24 - readr-1.1.0/readr/R/utils.R | 14 readr-1.1.0/readr/R/write.R | 110 +++--- readr-1.1.0/readr/R/zzz.R | 10 readr-1.1.0/readr/README.md | 197 ++++++------ readr-1.1.0/readr/build/vignette.rds |binary readr-1.1.0/readr/inst/doc/locales.Rmd | 2 readr-1.1.0/readr/inst/doc/locales.html | 8 readr-1.1.0/readr/inst/doc/readr.R |only readr-1.1.0/readr/inst/doc/readr.Rmd |only readr-1.1.0/readr/inst/doc/readr.html |only readr-1.1.0/readr/man/Tokenizers.Rd | 20 - readr-1.1.0/readr/man/callback.Rd | 18 - readr-1.1.0/readr/man/col_skip.Rd |only readr-1.1.0/readr/man/cols.Rd | 3 readr-1.1.0/readr/man/count_fields.Rd | 23 - readr-1.1.0/readr/man/datasource.Rd | 25 - readr-1.1.0/readr/man/date_names.Rd | 7 readr-1.1.0/readr/man/encoding.Rd | 24 - readr-1.1.0/readr/man/format_delim.Rd |only readr-1.1.0/readr/man/locale.Rd | 36 +- readr-1.1.0/readr/man/output_column.Rd |only readr-1.1.0/readr/man/parse_atomic.Rd | 37 -- readr-1.1.0/readr/man/parse_datetime.Rd | 88 ++--- readr-1.1.0/readr/man/parse_factor.Rd | 36 +- readr-1.1.0/readr/man/parse_guess.Rd | 11 readr-1.1.0/readr/man/parse_number.Rd | 11 readr-1.1.0/readr/man/parse_vector.Rd | 3 readr-1.1.0/readr/man/problems.Rd | 13 readr-1.1.0/readr/man/read_delim.Rd | 115 +++---- readr-1.1.0/readr/man/read_delim_chunked.Rd | 103 +++--- readr-1.1.0/readr/man/read_file.Rd | 55 ++- readr-1.1.0/readr/man/read_fwf.Rd | 101 +++--- readr-1.1.0/readr/man/read_lines.Rd | 70 ++-- readr-1.1.0/readr/man/read_lines_chunked.Rd | 27 - readr-1.1.0/readr/man/read_log.Rd | 85 ++--- readr-1.1.0/readr/man/read_rds.Rd | 31 + readr-1.1.0/readr/man/read_table.Rd | 123 ++++--- readr-1.1.0/readr/man/readr-package.Rd |only readr-1.1.0/readr/man/readr_example.Rd | 2 readr-1.1.0/readr/man/spec.Rd | 11 readr-1.1.0/readr/man/spec_delim.Rd | 116 +++---- readr-1.1.0/readr/man/tokenize.Rd | 17 - readr-1.1.0/readr/man/type_convert.Rd | 35 +- readr-1.1.0/readr/man/write_delim.Rd | 38 +- readr-1.1.0/readr/src/Collector.cpp | 45 +- readr-1.1.0/readr/src/Collector.h | 41 +- readr-1.1.0/readr/src/DateTimeParser.h | 21 + readr-1.1.0/readr/src/Progress.h | 26 + readr-1.1.0/readr/src/QiParsers.h | 12 readr-1.1.0/readr/src/RcppExports.cpp | 201 ++++++------ readr-1.1.0/readr/src/Reader.cpp | 10 readr-1.1.0/readr/src/Source.h | 2 readr-1.1.0/readr/src/SourceFile.h | 3 readr-1.1.0/readr/src/SourceRaw.h | 3 readr-1.1.0/readr/src/SourceString.h | 3 readr-1.1.0/readr/src/Tokenizer.cpp | 5 readr-1.1.0/readr/src/TokenizerDelim.cpp | 2 readr-1.1.0/readr/src/TokenizerFwf.cpp | 67 +++- readr-1.1.0/readr/src/TokenizerWs.cpp |only readr-1.1.0/readr/src/TokenizerWs.h |only readr-1.1.0/readr/src/datetime.cpp |only readr-1.1.0/readr/src/grisu3.c | 8 readr-1.1.0/readr/src/init.c |only readr-1.1.0/readr/src/localtime.c | 12 readr-1.1.0/readr/src/read.cpp | 22 + readr-1.1.0/readr/src/write.cpp | 39 +- readr-1.1.0/readr/src/write_connection.cpp |only readr-1.1.0/readr/src/write_connection.h |only readr-1.1.0/readr/src/write_delim.cpp | 24 - readr-1.1.0/readr/tests/testthat/basic-df-singlequote.csv |only readr-1.1.0/readr/tests/testthat/helper.R |only readr-1.1.0/readr/tests/testthat/test-col-spec.R | 27 + readr-1.1.0/readr/tests/testthat/test-encoding.R | 2 readr-1.1.0/readr/tests/testthat/test-eol.R | 6 readr-1.1.0/readr/tests/testthat/test-parsing-character.R | 61 +++ readr-1.1.0/readr/tests/testthat/test-parsing-factors.R | 34 ++ readr-1.1.0/readr/tests/testthat/test-parsing-logical.R | 4 readr-1.1.0/readr/tests/testthat/test-parsing-numeric.R | 9 readr-1.1.0/readr/tests/testthat/test-parsing-time.R | 9 readr-1.1.0/readr/tests/testthat/test-problems.R | 34 ++ readr-1.1.0/readr/tests/testthat/test-read-chunked.R | 63 +++ readr-1.1.0/readr/tests/testthat/test-read-csv.R | 23 + readr-1.1.0/readr/tests/testthat/test-read-file.R | 4 readr-1.1.0/readr/tests/testthat/test-read-fwf.R | 65 +++- readr-1.1.0/readr/tests/testthat/test-read-table.R |only readr-1.1.0/readr/tests/testthat/test-write-delim.R | 29 + readr-1.1.0/readr/tests/testthat/test-write-lines.R | 34 ++ readr-1.1.0/readr/tools |only readr-1.1.0/readr/vignettes/locales.Rmd | 2 readr-1.1.0/readr/vignettes/readr.Rmd |only readr-1.1.0/readr/vignettes/releases |only 129 files changed, 2183 insertions(+), 1371 deletions(-)
Title: Toolbox for Psychologists, Neuropsychologists and
Neuroscientists
Description: Contains statistical functions (for patient assessment, data preprocessing and reporting, ...) and datasets useful in psychology, neuropsychology and neuroscience.
Author: Dominique Makowski [aut, cre],
Phillip Alday [ctb]
Maintainer: Dominique Makowski <dom.makowski@gmail.com>
Diff between neuropsychology versions 0.3.0 dated 2016-11-10 and 0.5.0 dated 2017-03-22
neuropsychology-0.3.0/neuropsychology/R/get_factors.R |only neuropsychology-0.3.0/neuropsychology/R/get_numeric.R |only neuropsychology-0.3.0/neuropsychology/man/get_factors.Rd |only neuropsychology-0.3.0/neuropsychology/man/get_numeric.Rd |only neuropsychology-0.5.0/neuropsychology/DESCRIPTION | 21 +-- neuropsychology-0.5.0/neuropsychology/LICENSE | 4 neuropsychology-0.5.0/neuropsychology/MD5 | 66 +++++----- neuropsychology-0.5.0/neuropsychology/NAMESPACE | 14 +- neuropsychology-0.5.0/neuropsychology/NEWS.md | 30 ++++ neuropsychology-0.5.0/neuropsychology/R/APAze.R | 2 neuropsychology-0.5.0/neuropsychology/R/ASQ_subjective_mood_disorder.R |only neuropsychology-0.5.0/neuropsychology/R/cortable.R | 41 ++---- neuropsychology-0.5.0/neuropsychology/R/describe.R | 43 ++++-- neuropsychology-0.5.0/neuropsychology/R/dprime.R | 24 ++- neuropsychology-0.5.0/neuropsychology/R/extract_text.R | 8 - neuropsychology-0.5.0/neuropsychology/R/fa_loadings.R |only neuropsychology-0.5.0/neuropsychology/R/format_p.R | 8 - neuropsychology-0.5.0/neuropsychology/R/interpret.R |only neuropsychology-0.5.0/neuropsychology/R/odds_to_prob.R |only neuropsychology-0.5.0/neuropsychology/R/select_factors.R |only neuropsychology-0.5.0/neuropsychology/R/select_numeric.R |only neuropsychology-0.5.0/neuropsychology/R/specific_correlations.R |only neuropsychology-0.5.0/neuropsychology/R/startup_message.R | 4 neuropsychology-0.5.0/neuropsychology/R/theme_neuropsychology.R | 6 neuropsychology-0.5.0/neuropsychology/README.md | 56 ++------ neuropsychology-0.5.0/neuropsychology/data/models.rda |only neuropsychology-0.5.0/neuropsychology/inst/CITATION | 4 neuropsychology-0.5.0/neuropsychology/man/APAze.Rd | 6 neuropsychology-0.5.0/neuropsychology/man/ASQ_subjective_mood_disorder.Rd |only neuropsychology-0.5.0/neuropsychology/man/assess.Rd | 2 neuropsychology-0.5.0/neuropsychology/man/braincloud.Rd | 2 neuropsychology-0.5.0/neuropsychology/man/cortable.Rd | 12 - neuropsychology-0.5.0/neuropsychology/man/describe.Rd | 20 +-- neuropsychology-0.5.0/neuropsychology/man/dprime.Rd | 23 ++- neuropsychology-0.5.0/neuropsychology/man/extract_text.Rd | 6 neuropsychology-0.5.0/neuropsychology/man/fa_loadings.Rd |only neuropsychology-0.5.0/neuropsychology/man/format_p.Rd | 4 neuropsychology-0.5.0/neuropsychology/man/interpret.Rd |only neuropsychology-0.5.0/neuropsychology/man/models.Rd |only neuropsychology-0.5.0/neuropsychology/man/odds_to_probs.Rd |only neuropsychology-0.5.0/neuropsychology/man/select_factors.Rd |only neuropsychology-0.5.0/neuropsychology/man/select_numeric.Rd |only neuropsychology-0.5.0/neuropsychology/man/specific_correlations.Rd |only neuropsychology-0.5.0/neuropsychology/man/theme_neuropsychology.Rd | 2 44 files changed, 222 insertions(+), 186 deletions(-)
More information about neuropsychology at CRAN
Permanent link
Title: Discriminating Well Surveyed Spatial Units from Exhaustive
Biodiversity Databases
Description: It uses species accumulation curves and diverse estimators to assess, at the same time, the levels of survey coverage in multiple geographic cells of a size defined by the user. It also enables the geographical depiction of observed species richness, survey effort and completeness values including a background with administrative areas.
Author: Cástor Guisande González and Jorge M. Lobo
Maintainer: Cástor Guisande González <castor@uvigo.es>
Diff between KnowBR versions 1.1 dated 2017-01-01 and 1.2 dated 2017-03-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/KnowB.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Benford Analysis for Data Validation and Forensic Analytics
Description: Provides tools that make it easier to validate data using Benford's Law.
Author: Carlos Cinelli
Maintainer: Carlos Cinelli <carloscinelli@hotmail.com>
Diff between benford.analysis versions 0.1.4 dated 2016-05-08 and 0.1.4.1 dated 2017-03-22
DESCRIPTION | 8 +- MD5 | 61 +++++++++-------- R/data.documentation.R | 8 +- R/internal.functions-new-code-2.R | 129 +++++++++++++++++++++----------------- README.md | 4 - man/MAD.Rd | 1 man/benford.Rd | 1 man/benford.analysis.Rd | 2 man/census.2000_2010.Rd | 1 man/census.2009.Rd | 1 man/chisq.Rd | 1 man/corporate.payment.Rd | 1 man/dfactor.Rd | 1 man/duplicatesTable.Rd | 1 man/extract.digits.Rd | 1 man/getBfd.Rd | 1 man/getData.Rd | 1 man/getDigits.Rd | 1 man/getDuplicates.Rd | 1 man/getSuspects.Rd | 1 man/lakes.perimeter.Rd | 6 + man/mantissa.Rd | 1 man/marc.Rd | 1 man/p.these.digits.Rd | 1 man/p.this.digit.at.n.Rd | 1 man/plot.Benford.Rd | 1 man/print.Benford.Rd | 1 man/sino.forest.Rd | 1 man/suspectsTable.Rd | 1 man/taxable.incomes.1978.Rd | 1 tests/testthat/test-benford.R | 4 - tools |only 32 files changed, 124 insertions(+), 121 deletions(-)
More information about benford.analysis at CRAN
Permanent link
Title: R/Weka Interface Jars
Description: External jars required for package 'RWeka'.
Author: Kurt Hornik [aut, cre],
University of Waikato [ctb, cph] (Weka Java library)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWekajars versions 3.9.1-1 dated 2017-01-14 and 3.9.1-2 dated 2017-03-22
DESCRIPTION | 6 +++--- MD5 | 11 +++++++---- inst/java/arpack_combined_all.jar |only inst/java/core.jar |only inst/java/mtj.jar |only inst/java/weka.jar |binary java/Makefile | 6 ++++++ java/README | 34 +++++++++++++++++++++++++++++----- 8 files changed, 45 insertions(+), 12 deletions(-)
Title: A Wrapper for the Pinnacle API
Description: An interface to the API by Pinnacle that allows Pinnacle customers to interact with the sports market data in R.See <https://www.pinnacle.com/en/api> for more information. The Pinnacle API can be used to place wagers, retrieve line information, retrieve account information.Please be aware that the TOC of Pinnacle apply <https://www.pinnacle.com/en/termsandconditions>. An account with Pinnacle is necessary to use the Pinnacle API.
Author: Nicholas Jhirad, Marco Blume, Amine Gassem
Maintainer: Marco Blume <marco.blume@pinnaclesports.com>
Diff between pinnacle.API versions 1.92 dated 2016-08-10 and 2.0.4 dated 2017-03-22
pinnacle.API-1.92/pinnacle.API/R/pinnRawXMLResponse.R |only pinnacle.API-1.92/pinnacle.API/R/showOddsFunctions.R |only pinnacle.API-1.92/pinnacle.API/man/GetCredentials.Rd |only pinnacle.API-1.92/pinnacle.API/man/JSONtoDF.Rd |only pinnacle.API-1.92/pinnacle.API/man/cbindNames.Rd |only pinnacle.API-1.92/pinnacle.API/man/pinnRawXMLResponse.Rd |only pinnacle.API-2.0.4/pinnacle.API/DESCRIPTION | 15 pinnacle.API-2.0.4/pinnacle.API/MD5 | 82 - pinnacle.API-2.0.4/pinnacle.API/NAMESPACE | 19 pinnacle.API-2.0.4/pinnacle.API/NEWS | 24 pinnacle.API-2.0.4/pinnacle.API/R/Authorization.R | 10 pinnacle.API-2.0.4/pinnacle.API/R/EnvironmentSetting.R | 58 pinnacle.API-2.0.4/pinnacle.API/R/FixNames.R |only pinnacle.API-2.0.4/pinnacle.API/R/GetBets.R | 10 pinnacle.API-2.0.4/pinnacle.API/R/GetClientBalance.R | 11 pinnacle.API-2.0.4/pinnacle.API/R/GetCurrencies.R | 27 pinnacle.API-2.0.4/pinnacle.API/R/GetFixtures.R | 87 - pinnacle.API-2.0.4/pinnacle.API/R/GetInrunning.R | 25 pinnacle.API-2.0.4/pinnacle.API/R/GetLeagues.R | 27 pinnacle.API-2.0.4/pinnacle.API/R/GetLeaguesByID.R | 53 pinnacle.API-2.0.4/pinnacle.API/R/GetLine.R | 59 pinnacle.API-2.0.4/pinnacle.API/R/GetOdds.R | 100 + pinnacle.API-2.0.4/pinnacle.API/R/GetSettledFixtures.R |only pinnacle.API-2.0.4/pinnacle.API/R/GetSettledSpecialFixtures.R |only pinnacle.API-2.0.4/pinnacle.API/R/GetSpecialFixtures.R |only pinnacle.API-2.0.4/pinnacle.API/R/GetSpecialOdds.R |only pinnacle.API-2.0.4/pinnacle.API/R/GetSports.R | 29 pinnacle.API-2.0.4/pinnacle.API/R/PlaceBet.R | 25 pinnacle.API-2.0.4/pinnacle.API/R/PlaceParlayBet.R | 4 pinnacle.API-2.0.4/pinnacle.API/R/showOddsDF.R | 151 +- pinnacle.API-2.0.4/pinnacle.API/R/utils.R |only pinnacle.API-2.0.4/pinnacle.API/README.md | 635 ++++++++-- pinnacle.API-2.0.4/pinnacle.API/man/FixNames.Rd |only pinnacle.API-2.0.4/pinnacle.API/man/GetAPIEndpoint.Rd |only pinnacle.API-2.0.4/pinnacle.API/man/GetBetsList.Rd | 4 pinnacle.API-2.0.4/pinnacle.API/man/GetCurrencies.Rd | 4 pinnacle.API-2.0.4/pinnacle.API/man/GetFixtures.Rd | 16 pinnacle.API-2.0.4/pinnacle.API/man/GetLeagues.Rd | 2 pinnacle.API-2.0.4/pinnacle.API/man/GetLeaguesByID.Rd | 2 pinnacle.API-2.0.4/pinnacle.API/man/GetLine.Rd | 12 pinnacle.API-2.0.4/pinnacle.API/man/GetOdds.Rd | 30 pinnacle.API-2.0.4/pinnacle.API/man/GetPassword.Rd |only pinnacle.API-2.0.4/pinnacle.API/man/GetSettledFixtures.Rd |only pinnacle.API-2.0.4/pinnacle.API/man/GetSettledSpecialFixtures.Rd |only pinnacle.API-2.0.4/pinnacle.API/man/GetSpecialFixtures.Rd |only pinnacle.API-2.0.4/pinnacle.API/man/GetSpecialOdds.Rd |only pinnacle.API-2.0.4/pinnacle.API/man/GetSports.Rd | 4 pinnacle.API-2.0.4/pinnacle.API/man/GetUsername.Rd |only pinnacle.API-2.0.4/pinnacle.API/man/PlaceBet.Rd | 2 pinnacle.API-2.0.4/pinnacle.API/man/SetAPIEndpoint.Rd | 4 pinnacle.API-2.0.4/pinnacle.API/man/authorization.Rd | 3 pinnacle.API-2.0.4/pinnacle.API/man/showOddsDF.Rd | 34 52 files changed, 1107 insertions(+), 461 deletions(-)
Title: Compute Deviation and Correspondence Between Spatial Paths
Description: Functions to compute and display the area-based deviation between spatial paths and to compute a mapping based on minimizing area and distance-based cost. For details, see: Mueller, S. T., Perelman, B. S., & Veinott, E. S. (2016) <DOI:10.3758/s13428-015-0562-7>.
Author: Shane T. Mueller & Brandon S. Perelman
Maintainer: Shane T. Mueller <shanem@mtu.edu>
Diff between pathmapping versions 1.0.1 dated 2017-03-20 and 1.0.2 dated 2017-03-22
pathmapping-1.0.1/pathmapping/src/Makevars |only pathmapping-1.0.2/pathmapping/DESCRIPTION | 8 ++--- pathmapping-1.0.2/pathmapping/MD5 | 11 +++---- pathmapping-1.0.2/pathmapping/R/InsertIntersections.R | 17 ++++++++++-- pathmapping-1.0.2/pathmapping/R/IntersectPoint.R | 10 ++++--- pathmapping-1.0.2/pathmapping/man/GetMinMap.Rd | 2 - pathmapping-1.0.2/pathmapping/man/surveyors.Rd | 25 ++++++++++-------- 7 files changed, 46 insertions(+), 27 deletions(-)
Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications
as things that can be generated and manipulated programmatically.
Structural equation models may be specified with reticular action model matrices or paths,
linear structural relations matrices or paths, or
directly in matrix algebra.
Fit functions include full information maximum likelihood,
maximum likelihood, and weighted least squares.
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
equations, state space, and many others.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb],
Charles Driver [ctb],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Association for Computing Machinery [cph],
Dieter Kraft [cph],
Stefan Wilhelm [cph],
Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.7.4 dated 2017-01-17 and 2.7.9 dated 2017-03-22
OpenMx-2.7.4/OpenMx/inst/models/nightly/PPML_2L3M_NHEV.R |only OpenMx-2.7.4/OpenMx/inst/models/nightly/jointError.R |only OpenMx-2.7.4/OpenMx/inst/models/passing/check_default_options.R |only OpenMx-2.7.4/OpenMx/src/omxCsolnp.cpp |only OpenMx-2.7.4/OpenMx/src/omxGREMLfitfunction.h |only OpenMx-2.7.4/OpenMx/src/omxNormalExpectation.h |only OpenMx-2.7.4/OpenMx/src/omxStateSpaceExpectation.h |only OpenMx-2.7.9/OpenMx/DESCRIPTION | 40 OpenMx-2.7.9/OpenMx/MD5 | 620 +++++----- OpenMx-2.7.9/OpenMx/NEWS | 20 OpenMx-2.7.9/OpenMx/R/0ClassUnion.R | 4 OpenMx-2.7.9/OpenMx/R/MxAlgebra.R | 12 OpenMx-2.7.9/OpenMx/R/MxAlgebraConvert.R | 4 OpenMx-2.7.9/OpenMx/R/MxAlgebraFunctions.R | 27 OpenMx-2.7.9/OpenMx/R/MxAutoStart.R |only OpenMx-2.7.9/OpenMx/R/MxCommunication.R | 1 OpenMx-2.7.9/OpenMx/R/MxCompare.R | 13 OpenMx-2.7.9/OpenMx/R/MxCompute.R | 225 +++ OpenMx-2.7.9/OpenMx/R/MxCycleDetection.R | 2 OpenMx-2.7.9/OpenMx/R/MxData.R | 4 OpenMx-2.7.9/OpenMx/R/MxDataWLS.R | 23 OpenMx-2.7.9/OpenMx/R/MxEval.R | 1 OpenMx-2.7.9/OpenMx/R/MxExpectation.R | 59 OpenMx-2.7.9/OpenMx/R/MxExpectationBA81.R | 6 OpenMx-2.7.9/OpenMx/R/MxExpectationHiddenMarkov.R |only OpenMx-2.7.9/OpenMx/R/MxExpectationLISREL.R | 42 OpenMx-2.7.9/OpenMx/R/MxExpectationNormal.R | 42 OpenMx-2.7.9/OpenMx/R/MxExpectationRAM.R | 51 OpenMx-2.7.9/OpenMx/R/MxExpectationStateSpace.R | 151 +- OpenMx-2.7.9/OpenMx/R/MxFitFunctionML.R | 13 OpenMx-2.7.9/OpenMx/R/MxFitFunctionWLS.R | 2 OpenMx-2.7.9/OpenMx/R/MxModel.R | 5 OpenMx-2.7.9/OpenMx/R/MxNamespace.R | 11 OpenMx-2.7.9/OpenMx/R/MxOptions.R | 52 OpenMx-2.7.9/OpenMx/R/MxPPML.R | 228 --- OpenMx-2.7.9/OpenMx/R/MxReservedNames.R | 2 OpenMx-2.7.9/OpenMx/R/MxRestore.R | 4 OpenMx-2.7.9/OpenMx/R/MxRun.R | 22 OpenMx-2.7.9/OpenMx/R/MxRunHelperFunctions.R | 6 OpenMx-2.7.9/OpenMx/R/MxSE.R | 35 OpenMx-2.7.9/OpenMx/R/MxSaturatedModel.R | 4 OpenMx-2.7.9/OpenMx/R/MxSummary.R | 37 OpenMx-2.7.9/OpenMx/R/MxTryHard.R | 6 OpenMx-2.7.9/OpenMx/R/MxVersion.R | 2 OpenMx-2.7.9/OpenMx/R/sysdata.rda |binary OpenMx-2.7.9/OpenMx/README.md | 21 OpenMx-2.7.9/OpenMx/configure | 8 OpenMx-2.7.9/OpenMx/inst/CITATION | 2 OpenMx-2.7.9/OpenMx/inst/models/nightly/AnalyticGradientTest.R | 4 OpenMx-2.7.9/OpenMx/inst/models/nightly/Extreme_Multiformity_chi.R |only OpenMx-2.7.9/OpenMx/inst/models/nightly/GREML_monophenotype_1GRM.R | 6 OpenMx-2.7.9/OpenMx/inst/models/nightly/NelderMeadUnitTesting.R |only OpenMx-2.7.9/OpenMx/inst/models/nightly/RegimeSwitching_MatrixRawNoCholDifferentTransitions.R | 2 OpenMx-2.7.9/OpenMx/inst/models/nightly/SkippedRows.R |only OpenMx-2.7.9/OpenMx/inst/models/nightly/StateSpaceContinuous.R | 38 OpenMx-2.7.9/OpenMx/inst/models/nightly/grm_in_fiml.R |only OpenMx-2.7.9/OpenMx/inst/models/nightly/mplus-ex9.11.R | 12 OpenMx-2.7.9/OpenMx/inst/models/nightly/multilevelLatentRegression2.R | 268 ++-- OpenMx-2.7.9/OpenMx/inst/models/nightly/thresholdModel1Factor5VariateWLS.R | 33 OpenMx-2.7.9/OpenMx/inst/models/nightly/thresholdModel1Factor8Variate.R | 9 OpenMx-2.7.9/OpenMx/inst/models/nightly/xxm-lgc.R | 11 OpenMx-2.7.9/OpenMx/inst/models/nightly/xxm-mlcfa.R | 2 OpenMx-2.7.9/OpenMx/inst/models/passing/Acemix2.R | 7 OpenMx-2.7.9/OpenMx/inst/models/passing/AlgebraComputePassing.R | 582 ++++----- OpenMx-2.7.9/OpenMx/inst/models/passing/AnalyticConstraintJacobians--Eq_and_Ineq.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/AnalyticConstraintJacobians--LinearObjAndIneq.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/AnalyticConstraintJacobians--PowellBenchmark.R | 52 OpenMx-2.7.9/OpenMx/inst/models/passing/AugmentedGREMLfitfunction.R | 4 OpenMx-2.7.9/OpenMx/inst/models/passing/FitMultigroup.R | 2 OpenMx-2.7.9/OpenMx/inst/models/passing/GREML--151123missingDataRegressionTest.R | 8 OpenMx-2.7.9/OpenMx/inst/models/passing/GREML--minimal_test_model.R | 8 OpenMx-2.7.9/OpenMx/inst/models/passing/GREML--testStarterFunctionWithMissingData.R | 8 OpenMx-2.7.9/OpenMx/inst/models/passing/GREML_Error_Detection.R | 6 OpenMx-2.7.9/OpenMx/inst/models/passing/GeneralizedEstimatingEquations.R | 8 OpenMx-2.7.9/OpenMx/inst/models/passing/HMM-basic.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/HMM-defvar.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/HMM-multigroup.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/MultipleGroupWLS.R | 20 OpenMx-2.7.9/OpenMx/inst/models/passing/NelderMeadErrorTesting.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/NelderMeadTest--eqConstraint.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/NelderMeadTest--ineqConstraints.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/NelderMeadTest.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/OrdinalPathTest.R | 4 OpenMx-2.7.9/OpenMx/inst/models/passing/OrdinalTest.R | 4 OpenMx-2.7.9/OpenMx/inst/models/passing/OrdinalTestAlgebra.R | 9 OpenMx-2.7.9/OpenMx/inst/models/passing/Rampart1.R | 4 OpenMx-2.7.9/OpenMx/inst/models/passing/StateSpaceMissingData.R | 15 OpenMx-2.7.9/OpenMx/inst/models/passing/SummaryCheck.R | 6 OpenMx-2.7.9/OpenMx/inst/models/passing/Tiny_GREML_model_for_full_debug_logging.R | 2 OpenMx-2.7.9/OpenMx/inst/models/passing/TwinAnalysis_Multivariate_Matrix_Raw.R | 4 OpenMx-2.7.9/OpenMx/inst/models/passing/WarmStartTest.R | 37 OpenMx-2.7.9/OpenMx/inst/models/passing/automaticStarts.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/evalOnGrid.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/ifa-grm1.R | 11 OpenMx-2.7.9/OpenMx/inst/models/passing/jointFactorModelsTest.R | 5 OpenMx-2.7.9/OpenMx/inst/models/passing/jointFactorWls.R | 15 OpenMx-2.7.9/OpenMx/inst/models/passing/multilevelLatentRegression.R | 4 OpenMx-2.7.9/OpenMx/inst/models/passing/mxSE_test.R |only OpenMx-2.7.9/OpenMx/inst/models/passing/rfitfunc.R | 2 OpenMx-2.7.9/OpenMx/inst/models/passing/testNumericDerivWithConstraintWarning.R |only OpenMx-2.7.9/OpenMx/inst/tools/findBuildNum.sh | 6 OpenMx-2.7.9/OpenMx/inst/tools/testModels.R | 31 OpenMx-2.7.9/OpenMx/man/BaseCompute-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxAlgebraFormula-class.Rd | 4 OpenMx-2.7.9/OpenMx/man/MxBaseExpectation-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxBaseFitFunction-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxBaseNamed-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxBaseObjectiveMetaData-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxCharOrList-class.Rd | 2 OpenMx-2.7.9/OpenMx/man/MxCharOrLogical-class.Rd |only OpenMx-2.7.9/OpenMx/man/MxCharOrNumber-class.Rd | 2 OpenMx-2.7.9/OpenMx/man/MxCompute-class.Rd | 4 OpenMx-2.7.9/OpenMx/man/MxDataFrameOrMatrix-class.Rd | 4 OpenMx-2.7.9/OpenMx/man/MxDataStatic-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxDirectedGraph-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxExpectationXclass.Rd | 4 OpenMx-2.7.9/OpenMx/man/MxFitFunction-class.Rd | 4 OpenMx-2.7.9/OpenMx/man/MxFlatModel-class.Rd | 5 OpenMx-2.7.9/OpenMx/man/MxInterval-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxLISRELModel-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxListOrNull-class.Rd | 2 OpenMx-2.7.9/OpenMx/man/MxOptionalChar-class.Rd | 2 OpenMx-2.7.9/OpenMx/man/MxOptionalCharOrNumber-class.Rd | 2 OpenMx-2.7.9/OpenMx/man/MxOptionalLogical-class.Rd | 2 OpenMx-2.7.9/OpenMx/man/MxOptionalMatrix-class.Rd | 2 OpenMx-2.7.9/OpenMx/man/MxOptionalNumeric-class.Rd | 2 OpenMx-2.7.9/OpenMx/man/MxRAMGraph-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/MxRAMMetaData-class.Rd | 1 OpenMx-2.7.9/OpenMx/man/MxRAMModel-class.Rd | 3 OpenMx-2.7.9/OpenMx/man/OpenMx.Rd | 1 OpenMx-2.7.9/OpenMx/man/expm.Rd | 1 OpenMx-2.7.9/OpenMx/man/genericFitDependencies-MxBaseFitFunction-method.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxAddDependency.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxAutoOptionValue.Rd |only OpenMx-2.7.9/OpenMx/man/imxCheckMatrices.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxCheckVariables.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxConDecMatrixSlots.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxConstraintRelations.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxConvertIdentifier.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxConvertLabel.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxConvertSubstitution.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxCreateMatrix.Rd | 3 OpenMx-2.7.9/OpenMx/man/imxDataTypes.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxDefaultGetSlotDisplayNames.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxDeparse.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxDependentModels.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxDetermineDefaultOptimizer.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxDiff.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxDmvnorm.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxEvalByName.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxExtractMethod.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxExtractNames.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxExtractReferences.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxExtractSlot.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxFlattenModel.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxFreezeModel.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxGenSwift.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxGenerateLabels.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxGenerateNamespace.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxGenericModelBuilder.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxGentleResize.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxGetSlotDisplayNames.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxHasConstraint.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxHasDefinitionVariable.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxHasNPSOL.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxHasOpenMP.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxIdentifier.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxIndependentModels.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxInitModel.Rd | 3 OpenMx-2.7.9/OpenMx/man/imxIsDefinitionVariable.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxIsPath.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxJiggle.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxLocateFunction.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxLocateIndex.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxLocateLabel.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxLog.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxLookupSymbolTable.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxModelBuilder.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxModelTypes.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxMpiWrap.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxOriginalMx.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxPPML.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxPPML.Test.Battery.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxPPML.Test.Test.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxPreprocessModel.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxReplaceMethod.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxReplaceModels.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxReplaceSlot.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxReportProgress.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxReservedNames.Rd | 3 OpenMx-2.7.9/OpenMx/man/imxReverseIdentifier.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxRobustSE.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxRowGradients.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxSameType.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxSeparatorChar.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxSfClient.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxSimpleRAMPredicate.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxSparseInvert.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxSquareMatrix.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxSymmetricMatrix.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxTypeName.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxUntitledName.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxUntitledNumber.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxUntitledNumberReset.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxUpdateModelValues.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxVariableTypes.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxVerifyMatrix.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxVerifyModel.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxVerifyName.Rd | 1 OpenMx-2.7.9/OpenMx/man/imxVerifyReference.Rd | 1 OpenMx-2.7.9/OpenMx/man/logm.Rd | 1 OpenMx-2.7.9/OpenMx/man/mxAlgebra.Rd | 13 OpenMx-2.7.9/OpenMx/man/mxAlgebraFromString.Rd | 1 OpenMx-2.7.9/OpenMx/man/mxAutoStart.Rd |only OpenMx-2.7.9/OpenMx/man/mxAvailableOptimizers.Rd | 1 OpenMx-2.7.9/OpenMx/man/mxComputeConfidenceInterval.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeDefault.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeEM.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeGradientDescent.Rd | 12 OpenMx-2.7.9/OpenMx/man/mxComputeHessianQuality.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeIterate.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeNelderMead.Rd |only OpenMx-2.7.9/OpenMx/man/mxComputeNewtonRaphson.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeNothing.Rd | 1 OpenMx-2.7.9/OpenMx/man/mxComputeNumericDeriv.Rd | 10 OpenMx-2.7.9/OpenMx/man/mxComputeOnce.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeReportDeriv.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeReportExpectation.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeSequence.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeStandardError.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxComputeTryHard.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxConstraint.Rd | 4 OpenMx-2.7.9/OpenMx/man/mxDataDynamic.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxEval.Rd | 11 OpenMx-2.7.9/OpenMx/man/mxEvaluateOnGrid.Rd |only OpenMx-2.7.9/OpenMx/man/mxExpectationBA81.Rd | 5 OpenMx-2.7.9/OpenMx/man/mxExpectationHiddenMarkov.Rd |only OpenMx-2.7.9/OpenMx/man/mxGenerateData.Rd | 3 OpenMx-2.7.9/OpenMx/man/mxGetExpected.Rd | 5 OpenMx-2.7.9/OpenMx/man/mxKalmanScores.Rd | 9 OpenMx-2.7.9/OpenMx/man/mxMakeNames.Rd | 1 OpenMx-2.7.9/OpenMx/man/mxNormalQuantiles.Rd | 1 OpenMx-2.7.9/OpenMx/man/mxOption.Rd | 10 OpenMx-2.7.9/OpenMx/man/mxSE.Rd | 11 OpenMx-2.7.9/OpenMx/man/mxSetDefaultOptions.Rd | 1 OpenMx-2.7.9/OpenMx/man/mxSimplify2Array.Rd | 1 OpenMx-2.7.9/OpenMx/man/mxTryHard.Rd | 6 OpenMx-2.7.9/OpenMx/man/omxCheckCloseEnough.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxCheckError.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxCheckNamespace.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxCheckWarning.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxConstrainMLThresholds.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxDetectCores.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxGetNPSOL.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxGetRAMDepth.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxManifestModelByParameterJacobian.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxNameAnonymousParameters.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxParallelCI.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxQuotes.Rd | 1 OpenMx-2.7.9/OpenMx/man/omxRAMtoML.Rd | 1 OpenMx-2.7.9/OpenMx/man/twinData.Rd | 11 OpenMx-2.7.9/OpenMx/src/AlgebraFunctions.h | 125 +- OpenMx-2.7.9/OpenMx/src/Compute.cpp | 325 ----- OpenMx-2.7.9/OpenMx/src/Compute.h | 122 - OpenMx-2.7.9/OpenMx/src/ComputeGD.cpp | 415 ++++++ OpenMx-2.7.9/OpenMx/src/ComputeGD.h |only OpenMx-2.7.9/OpenMx/src/ComputeNM.cpp |only OpenMx-2.7.9/OpenMx/src/ComputeNM.h |only OpenMx-2.7.9/OpenMx/src/ComputeNR.cpp | 6 OpenMx-2.7.9/OpenMx/src/ComputeSD.cpp | 10 OpenMx-2.7.9/OpenMx/src/Connectedness.h | 6 OpenMx-2.7.9/OpenMx/src/EnableWarnings.h |only OpenMx-2.7.9/OpenMx/src/FellnerFitFunction.cpp | 182 +- OpenMx-2.7.9/OpenMx/src/MarkovExpectation.cpp |only OpenMx-2.7.9/OpenMx/src/MarkovFF.cpp |only OpenMx-2.7.9/OpenMx/src/RAMInternal.h | 71 - OpenMx-2.7.9/OpenMx/src/autodep | 199 +-- OpenMx-2.7.9/OpenMx/src/ba81quad.cpp | 5 OpenMx-2.7.9/OpenMx/src/dmvnorm.cpp | 5 OpenMx-2.7.9/OpenMx/src/finiteDifferences.h | 259 +++- OpenMx-2.7.9/OpenMx/src/fitMultigroup.cpp | 68 - OpenMx-2.7.9/OpenMx/src/fitMultigroup.h | 2 OpenMx-2.7.9/OpenMx/src/glue.cpp | 23 OpenMx-2.7.9/OpenMx/src/glue.h | 56 OpenMx-2.7.9/OpenMx/src/matrix.cpp | 5 OpenMx-2.7.9/OpenMx/src/merge.cpp | 5 OpenMx-2.7.9/OpenMx/src/nloptcpp.cpp | 150 +- OpenMx-2.7.9/OpenMx/src/omxAlgebra.cpp | 36 OpenMx-2.7.9/OpenMx/src/omxAlgebra.h | 3 OpenMx-2.7.9/OpenMx/src/omxAlgebraFitFunction.cpp | 58 OpenMx-2.7.9/OpenMx/src/omxData.cpp | 10 OpenMx-2.7.9/OpenMx/src/omxDefines.h | 72 + OpenMx-2.7.9/OpenMx/src/omxExpectation.cpp | 101 - OpenMx-2.7.9/OpenMx/src/omxExpectation.h | 85 - OpenMx-2.7.9/OpenMx/src/omxExpectationBA81.cpp | 108 - OpenMx-2.7.9/OpenMx/src/omxExpectationBA81.h | 11 OpenMx-2.7.9/OpenMx/src/omxExportBackendState.cpp | 35 OpenMx-2.7.9/OpenMx/src/omxFIMLFitFunction.cpp | 214 +-- OpenMx-2.7.9/OpenMx/src/omxFIMLFitFunction.h | 105 + OpenMx-2.7.9/OpenMx/src/omxFIMLSingleIteration.cpp | 7 OpenMx-2.7.9/OpenMx/src/omxFitFunction.cpp | 134 -- OpenMx-2.7.9/OpenMx/src/omxFitFunction.h | 90 - OpenMx-2.7.9/OpenMx/src/omxFitFunctionBA81.cpp | 80 - OpenMx-2.7.9/OpenMx/src/omxGREMLExpectation.cpp | 66 - OpenMx-2.7.9/OpenMx/src/omxGREMLExpectation.h | 15 OpenMx-2.7.9/OpenMx/src/omxGREMLfitfunction.cpp | 155 +- OpenMx-2.7.9/OpenMx/src/omxHessianCalculation.cpp | 13 OpenMx-2.7.9/OpenMx/src/omxImportFrontendState.cpp | 26 OpenMx-2.7.9/OpenMx/src/omxLISRELExpectation.cpp | 40 OpenMx-2.7.9/OpenMx/src/omxLISRELExpectation.h | 13 OpenMx-2.7.9/OpenMx/src/omxMLFitFunction.cpp | 92 - OpenMx-2.7.9/OpenMx/src/omxMatrix.cpp | 8 OpenMx-2.7.9/OpenMx/src/omxMatrix.h | 7 OpenMx-2.7.9/OpenMx/src/omxNPSOLSpecific.cpp | 20 OpenMx-2.7.9/OpenMx/src/omxNormalExpectation.cpp | 57 OpenMx-2.7.9/OpenMx/src/omxRAMExpectation.cpp | 248 ++-- OpenMx-2.7.9/OpenMx/src/omxRFitFunction.cpp | 28 OpenMx-2.7.9/OpenMx/src/omxRFitFunction.h | 10 OpenMx-2.7.9/OpenMx/src/omxRowFitFunction.cpp | 54 OpenMx-2.7.9/OpenMx/src/omxRowFitFunction.h | 7 OpenMx-2.7.9/OpenMx/src/omxSadmvnWrapper.h | 16 OpenMx-2.7.9/OpenMx/src/omxState.cpp | 32 OpenMx-2.7.9/OpenMx/src/omxState.h | 18 OpenMx-2.7.9/OpenMx/src/omxStateSpaceExpectation.cpp | 135 +- OpenMx-2.7.9/OpenMx/src/omxSymbolTable.cpp | 7 OpenMx-2.7.9/OpenMx/src/omxSymbolTable.h | 3 OpenMx-2.7.9/OpenMx/src/omxWLSFitFunction.cpp | 69 - OpenMx-2.7.9/OpenMx/src/slsqp.c | 2 OpenMx-2.7.9/OpenMx/src/ssMLFit.cpp | 76 - OpenMx-2.7.9/OpenMx/src/subnp.cpp | 128 +- 330 files changed, 4260 insertions(+), 3660 deletions(-)
Title: Feature Selection and Classification with the Embedded
Validation Procedures for Biomedical Data Analysis
Description: Contains functions for the data analysis with the emphasis on biological data, including several algorithms for feature ranking, feature selection, classification
algorithms with the embedded validation procedures.
The functions can deal with numerical as well as with nominal features. Includes also the functions for calculation
of feature AUC (Area Under the ROC Curve) and HUM (hypervolume under manifold) values and construction 2D- and 3D- ROC curves.
Provides the calculation of Area Above the RCC (AAC) values and construction of Relative Cost Curves
(RCC) to estimate the classifier performance under unequal misclassification costs problem.
There exists the special function to deal with missing values, including different imputing schemes.
Author: Natalia Novoselova,Junxi Wang,Frank Pessler,Frank Klawonn
Maintainer: Natalia Novoselova <novos65@mail.ru>
Diff between Biocomb versions 0.2 dated 2015-11-27 and 0.3 dated 2017-03-22
DESCRIPTION | 18 ++++++------- MD5 | 23 ++++++++-------- NAMESPACE | 6 +--- R/CalculateHUM_ROC.R | 2 - R/CalculateHUM_seq.R | 2 - R/RcppExports.R | 2 - R/class_cross.R | 3 +- R/compute.auc.pvalues.R | 2 - man/Biocomb-package.Rd | 4 +- man/classifier.loop.Rd | 2 - src/Biocomb_init.c |only src/CHI2.cpp | 4 -- src/RcppExports.cpp | 66 ++++++++++++++++++++++++------------------------ 13 files changed, 66 insertions(+), 68 deletions(-)
Title: Stacked Species Distribution Modelling
Description: Allows to map species richness and endemism based on stacked
species distribution models (SSDM). Individuals SDMs can be created using a
single or multiple algorithms (ensemble SDMs). For each species, an SDM can
yield a habitat suitability map, a binary map, a between-algorithm variance
map, and can assess variable importance, algorithm accuracy, and between-
algorithm correlation. Methods to stack individual SDMs include summing
individual probabilities and thresholding then summing. Thresholding can be
based on a specific evaluation metric or by drawing repeatedly from a Bernoulli
distribution. The SSDM package also provides a user-friendly interface.
Author: Sylvain Schmitt, Robin Pouteau, Dimitri Justeau, Philippe Birnbaum
Maintainer: Sylvain Schmitt <sylvain.schmitt@agroparistech.fr>
Diff between SSDM versions 0.2.0 dated 2017-03-17 and 0.2.1 dated 2017-03-22
DESCRIPTION | 6 MD5 | 8 R/gui.R | 10 README.md | 2 inst/shiny/gui/server.R | 1920 ++++++++++++++++++++++++------------------------ 5 files changed, 976 insertions(+), 970 deletions(-)
Title: Range Ancestral State Estimation for Phylogeography and
Comparative Analyses
Description: Implements the Range Ancestral State Estimation for phylogeography described in Quintero, I., Keil, P., Jetz, W., & Crawford, F. W. (2015) <DOI:10.1093/sysbio/syv057>. It also includes Bayesian inference of ancestral states under a Brownian Motion model of character evolution and Maximum Likelihood estimation of rase for n-dimensional data. Visualizing functions in 3D are implemented using the rgl package.
Author: Ignacio Quintero [aut, cre],
Forrest W. Crawford [aut],
Petr Keil [aut]
Maintainer: Ignacio Quintero <ignacio.quintero@yale.edu>
Diff between rase versions 0.2-22 dated 2016-01-13 and 0.3-2 dated 2017-03-22
rase-0.2-22/rase/man/bm_est_sigma2.Rd |only rase-0.2-22/rase/man/bm_loglik_ancestors_poly.Rd |only rase-0.2-22/rase/man/post.mcmc.Rd |only rase-0.3-2/rase/DESCRIPTION | 18 rase-0.3-2/rase/MD5 | 35 - rase-0.3-2/rase/NAMESPACE | 23 rase-0.3-2/rase/R/rase_source.r | 576 +++++++++++-------- rase-0.3-2/rase/README.md | 6 rase-0.3-2/rase/man/add.dens.Rd | 50 - rase-0.3-2/rase/man/add.polygons.Rd | 40 - rase-0.3-2/rase/man/bm_ase.Rd | 45 - rase-0.3-2/rase/man/data.for.3d.Rd | 40 - rase-0.3-2/rase/man/make_bm_est_sigma2.Rd |only rase-0.3-2/rase/man/make_bm_loglik_ancestors_poly.Rd |only rase-0.3-2/rase/man/name.poly.Rd | 32 - rase-0.3-2/rase/man/phylo.3d.Rd | 41 - rase-0.3-2/rase/man/point.like.bm.Rd | 36 - rase-0.3-2/rase/man/ranges.like.bm.Rd | 77 +- rase-0.3-2/rase/man/rase-package.Rd | 80 +- rase-0.3-2/rase/man/rase.Rd | 111 +-- rase-0.3-2/rase/man/rase.slice.Rd | 74 +- 21 files changed, 687 insertions(+), 597 deletions(-)
Title: Create a Random List for Crossover Studies
Description: Contains a function to randomize subjects, patients in groups of
sequences (treatment sequences).
If a blocksize is given, the randomization will be done within blocks.
The randomization may be controlled by a Wald-Wolfowitz runs test.
Functions to obtain the p-value of that test are included.
The package is mainly intended for randomization of bioequivalence studies
but may be used also for other clinical crossover studies.
Contains two helper functions sequences() and williams() to get the sequences
of commonly used designs in BE studies.
Author: D. Labes
Maintainer: D. Labes <detlewlabes@gmx.de>
Diff between randomizeBE versions 0.3-2 dated 2015-06-30 and 0.3-3 dated 2017-03-22
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS | 4 ++++ R/RL4_new.R | 2 +- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Tidy, Type-Safe 'prediction()' Methods
Description: A one-function package containing 'prediction()', a type-safe alternative to 'predict()' that always returns a data frame.
Author: Thomas J. Leeper [aut, cre],
Carl Ganz [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between prediction versions 0.1.10 dated 2017-03-01 and 0.1.11 dated 2017-03-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/build_datalist.R | 6 ++---- README.md | 11 +++++++++-- 5 files changed, 23 insertions(+), 14 deletions(-)
Title: Orthogonalizing EM
Description: Solves penalized least squares problems for big tall data using the orthogonalizing EM algorithm of Xiong et al. (2016) <doi:10.1080/00401706.2015.1054436>. The main fitting function is oem() and the functions cv.oem() and xval.oem() are for cross validation, the latter being an accelerated cross validation function for linear models. The big.oem() function allows for out of memory fitting.
Author: Bin Dai [aut],
Jared Huling [aut, cre],
Yixuan Qiu [ctb]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between oem versions 2.0.4 dated 2017-02-21 and 2.0.5 dated 2017-03-22
DESCRIPTION | 10 MD5 | 79 +++---- NAMESPACE | 1 R/big_oem.R | 66 +++++- R/cv_oem.R | 33 ++- R/methods.R | 309 +++++++++++++++++++++++++----- R/oem.R | 109 ++++++++-- R/oem_xtx.R | 81 +++++++ R/oem_xval.R | 87 +++++++- README.md | 110 ++++++---- inst/doc/oem_vignette.R | 51 +++- inst/doc/oem_vignette.Rmd | 79 +++++-- inst/doc/oem_vignette.html | 118 +++++++---- man/big.oem.Rd | 49 ++++ man/cv.oem.Rd | 15 - man/logLik.Rd | 14 + man/oem.Rd | 56 ++++- man/oem.xtx.Rd | 52 ++++- man/plot.Rd | 11 - man/predict.cv.oem.Rd | 8 man/predict.xval.oem.Rd | 8 man/xval.oem.Rd | 49 ++++ src/Makevars | 1 src/Makevars.win | 1 src/oem_base.h | 5 src/oem_big.cpp | 10 src/oem_big.h | 451 +++++++++++++++++++++++++++++++++++++++----- src/oem_dense.cpp | 20 + src/oem_dense.h | 287 +++++++++++++++++++++++----- src/oem_logistic_dense.cpp | 13 - src/oem_logistic_dense.h | 258 ++++++++++++++++++++++--- src/oem_logistic_sparse.cpp | 14 + src/oem_logistic_sparse.h | 260 ++++++++++++++++++++++--- src/oem_sparse.cpp | 14 + src/oem_sparse.h | 259 ++++++++++++++++++++++--- src/oem_xtx.cpp | 16 + src/oem_xtx.h | 260 ++++++++++++++++++++++--- src/oem_xval_dense.cpp | 12 - src/oem_xval_dense.h | 253 ++++++++++++++++++++++-- vignettes/mult-1.png |only vignettes/oem_vignette.Rmd | 79 +++++-- 41 files changed, 3023 insertions(+), 585 deletions(-)
Title: Scatter Pie Plot
Description: Creates scatterpie plots, especially useful for plotting pies on a
map.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between scatterpie versions 0.0.6 dated 2017-02-14 and 0.0.7 dated 2017-03-22
DESCRIPTION | 17 +++++++++-------- MD5 | 22 +++++++++++----------- NEWS | 6 +++++- R/geom_scatterpie_legend.R | 19 +++++++++++++++++-- build/vignette.rds |binary inst/doc/scatterpie.R | 5 ++++- inst/doc/scatterpie.Rmd | 5 ++++- inst/doc/scatterpie.html | 32 +++++++++++++++++--------------- man/geom_scatterpie.Rd | 1 + man/geom_scatterpie_legend.Rd | 5 ++++- man/recenter.Rd | 1 + vignettes/scatterpie.Rmd | 5 ++++- 12 files changed, 77 insertions(+), 41 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Functions for simulating and testing particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometric theory as well as publications in personality research. For more information, see the <http://personality-project.org/r> web page.
Author: William Revelle <revelle@northwestern.edu>
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 1.6.12 dated 2017-01-08 and 1.7.3.21 dated 2017-03-22
DESCRIPTION | 15 + MD5 | 127 ++++++++------- NAMESPACE | 17 +- R/alpha.R | 17 ++ R/cor.plot.R | 36 +--- R/describe.by.R | 2 R/esem.R | 12 + R/fa.R | 82 ++++++---- R/fa.parallel.R | 43 +++-- R/factor.stats.R | 127 ++++++++------- R/fisherz.R | 5 R/fix.dplyr.R |only R/harmonic.mean.R | 6 R/kappa.R | 11 - R/mediate.r | 22 +- R/misc.R | 110 ++++++++++++- R/multilevel.reliability.R |only R/omegaSem.R | 2 R/pairs.panels.R | 26 ++- R/plot.irt.R | 8 - R/print.psych.R | 61 ++----- R/print.psych.omega.R | 28 ++- R/read.clipboard.R | 41 ++++- R/scatter.hist.R | 39 +++- R/score.irt.r | 6 R/score.items.R | 2 R/scoreOverlap.r | 2 R/set.cor.R | 10 - R/sim.multilevel.R | 125 +++++++++++++++ R/skew.R | 3 R/statsBy.r | 40 +++-- R/unidim.r |only build/vignette.rds |binary data/neo.rda |binary inst/CITATION | 8 - inst/NEWS.Rd | 77 +++++++-- inst/doc/intro.R |only inst/doc/intro.Rnw |only inst/doc/intro.pdf |only inst/doc/overview.R | 251 +++++++++---------------------- inst/doc/overview.Rnw | 334 ++++++++++++++---------------------------- inst/doc/overview.pdf |binary inst/doc/psych_for_sem.pdf |binary man/00.psych-package.Rd | 40 ++--- man/KMO.Rd | 12 - man/alpha.Rd | 1 man/bfi.Rd | 2 man/cor.plot.Rd | 19 ++ man/correct.cor.Rd | 9 - man/dfOrder.Rd | 12 - man/fa.Rd | 27 ++- man/fa.parallel.Rd | 3 man/fisherz.Rd | 10 + man/harmonic.mean.Rd | 14 + man/kappa.Rd | 13 + man/mediate.Rd | 15 + man/mssd.Rd | 19 ++ man/multilevel.reliability.Rd |only man/omega.Rd | 7 man/pairs.panels.Rd | 4 man/read.clipboard.Rd | 54 +++++- man/scatter.hist.Rd | 48 ++++-- man/score.items.Rd | 5 man/set.cor.Rd | 17 +- man/sim.multilevel.Rd | 56 ++++++- man/tetrachor.Rd | 6 man/unidim.Rd |only vignettes/intro.Rnw |only vignettes/overview.Rnw | 334 ++++++++++++++---------------------------- 69 files changed, 1382 insertions(+), 1040 deletions(-)
Title: Polygon Clipping
Description: R port of Angus Johnson's open source library Clipper. Performs polygon clipping operations (intersection, union, set minus, set difference) for polygonal regions of arbitrary complexity, including holes. Computes offset polygons (spatial buffer zones, morphological dilations, Minkowski dilations) for polygonal regions and polygonal lines. Computes Minkowski Sum of general polygons. There is a function for removing self-intersections from polygon data.
Author: Angus Johnson [aut] (C++ original,
http://www.angusj.com/delphi/clipper.php),
Adrian Baddeley [aut, trl, cre],
Brian D. Ripley [ctb],
Kurt Hornik [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between polyclip versions 1.5-6 dated 2016-04-02 and 1.6-1 dated 2017-03-22
DESCRIPTION | 14 ++++++++------ MD5 | 11 ++++++----- NAMESPACE | 3 +-- R/clipper.R | 15 ++++++++++----- configure.ac | 2 +- src/Makevars.win | 1 + src/init.c |only 7 files changed, 27 insertions(+), 19 deletions(-)
Title: A Test Environment for HTTP Requests
Description: Testing code and packages that communicate with remote servers can
be painful. Dealing with authentication, bootstrapping server state,
cleaning up objects that may get created during the test run, network
flakiness, and other complications can make testing seem too costly to
bother with. But it doesn't need to be that hard. This package enables one
to test all of the logic on the R sides of the API in your package without
requiring access to the remote service. Importantly, it provides three test
contexts that mock the network connection in different ways, and it offers
additional expectations to assert that HTTP requests were--or were
not--made. Using these tools, one can test that code is making the intended
requests and that it handles the expected responses correctly, all without
depending on a connection to a remote API.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal.p.richardson@gmail.com>
Diff between httptest versions 1.1.0 dated 2017-02-03 and 1.2.0 dated 2017-03-22
DESCRIPTION | 8 +-- MD5 | 23 +++++---- NEWS.md | 8 +++ R/httptest.R | 9 --- R/mock-api.R | 70 +++++++++++++++++++--------- R/without-internet.R | 9 ++- README.md | 2 man/buildMockURL.Rd | 7 +- man/with_mock_API.Rd | 19 ++++--- tests/testthat/api/object1-POST.json |only tests/testthat/api/object1-f913cf-POST.json |only tests/testthat/example.com |only tests/testthat/test-expect-header.R | 1 tests/testthat/test-mock-api.R | 66 ++++++++++++++++++++++++++ 14 files changed, 164 insertions(+), 58 deletions(-)
More information about collapsibleTree at CRAN
Permanent link
Title: Bagging Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM
or Gibbs sampling, with optional sampling techniques and kernel term.
Author: Alencar Xavier, William Muir, Shizhong Xu, Katy Rainey.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between bWGR versions 1.3.2 dated 2016-09-21 and 1.4 dated 2017-03-22
bWGR-1.3.2/bWGR/R/ben.R |only bWGR-1.3.2/bWGR/inst/doc |only bWGR-1.3.2/bWGR/man/ben.Rd |only bWGR-1.3.2/bWGR/src/GSEN.cpp |only bWGR-1.3.2/bWGR/src/KMUP.cpp |only bWGR-1.3.2/bWGR/src/KMUP2.cpp |only bWGR-1.3.2/bWGR/src/emBA.cpp |only bWGR-1.3.2/bWGR/src/emBB.cpp |only bWGR-1.3.2/bWGR/src/emBC.cpp |only bWGR-1.3.2/bWGR/src/emRR.cpp |only bWGR-1.4/bWGR/DESCRIPTION | 14 ++- bWGR-1.4/bWGR/MD5 | 32 +++----- bWGR-1.4/bWGR/NAMESPACE | 8 +- bWGR-1.4/bWGR/R/RcppExports.R | 36 +++++---- bWGR-1.4/bWGR/R/wgr.R | 74 +++++++++++++++---- bWGR-1.4/bWGR/inst/CITATION | 17 ++-- bWGR-1.4/bWGR/man/bWGR.Rd | 7 + bWGR-1.4/bWGR/man/em.Rd | 51 +++++++------ bWGR-1.4/bWGR/man/mkr.Rd | 6 - bWGR-1.4/bWGR/man/wgr.Rd | 42 ++++++----- bWGR-1.4/bWGR/src/Functions.cpp |only bWGR-1.4/bWGR/src/RcppExports.cpp | 125 +++++++++++++++++++-------------- bWGR-1.4/bWGR/src/RegisteringDynamic.c |only 23 files changed, 245 insertions(+), 167 deletions(-)