Title: Uniformly Most Powerful Tests
Description: Does uniformly most powerful (UMP) and uniformly most
powerful unbiased (UMPU) tests. At present only distribution implemented
is binomial distribution. Also does fuzzy tests and confidence intervals
(following Geyer and Meeden, 2005, <doi:10.1214/088342305000000340>)
for the binomial
distribution (one-tailed procedures based on UMP test and two-tailed
procedures based on UMPU test).
Author: Charles J. Geyer <charlie@stat.umn.edu> and
Glen D. Meeden <glen@stat.umn.edu>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between ump versions 0.5-6 dated 2015-07-02 and 0.5-8 dated 2017-03-26
ump-0.5-6/ump/CHANGES |only ump-0.5-8/ump/ChangeLog |only ump-0.5-8/ump/DESCRIPTION | 13 +++++++------ ump-0.5-8/ump/MD5 | 17 ++++++++++------- ump-0.5-8/ump/NAMESPACE | 2 +- ump-0.5-8/ump/R/umpu.binom.R | 15 ++++++--------- ump-0.5-8/ump/build/vignette.rds |binary ump-0.5-8/ump/inst/doc/design.pdf |binary ump-0.5-8/ump/src/Makevars |only ump-0.5-8/ump/src/init.c |only ump-0.5-8/ump/src/ump.h |only ump-0.5-8/ump/src/umpubinom.c | 1 + 12 files changed, 25 insertions(+), 23 deletions(-)
Title: An Installation Framework for Shiny Apps
Description: Installs shiny apps using Inno Setup, an open source software that builds installers for Windows programs <http://www.jrsoftware.org/ishelp/>.
Author: Jon Hill [aut, cre, cph],
W. Lee Pang [aut, cph] (DesktopDeployR project at
https://github.com/wleepang/DesktopDeployR)
Maintainer: Jon Hill <jon.mark.hill@gmail.com>
Diff between RInno versions 0.0.1 dated 2017-03-02 and 0.0.2 dated 2017-03-26
RInno-0.0.1/RInno/R/copy_deployment.R |only RInno-0.0.1/RInno/R/inno_doc.R |only RInno-0.0.1/RInno/inst/deployment |only RInno-0.0.1/RInno/inst/doc/Deployment.R |only RInno-0.0.1/RInno/inst/doc/Deployment.Rmd |only RInno-0.0.1/RInno/inst/doc/Deployment.html |only RInno-0.0.1/RInno/man/copy_deployment.Rd |only RInno-0.0.1/RInno/man/inno_doc.Rd |only RInno-0.0.1/RInno/man/ispp_doc.Rd |only RInno-0.0.1/RInno/vignettes/Deployment.Rmd |only RInno-0.0.2/RInno/DESCRIPTION | 15 - RInno-0.0.2/RInno/MD5 | 117 ++++++----- RInno-0.0.2/RInno/NEWS.md | 20 + RInno-0.0.2/RInno/R/code.R | 4 RInno-0.0.2/RInno/R/copy_installation.R |only RInno-0.0.2/RInno/R/create_app.R | 84 ++++---- RInno-0.0.2/RInno/R/create_bat.R | 2 RInno-0.0.2/RInno/R/create_config.R | 21 +- RInno-0.0.2/RInno/R/create_pkgs.R | 2 RInno-0.0.2/RInno/R/example_app.R | 15 - RInno-0.0.2/RInno/R/files.R | 10 RInno-0.0.2/RInno/R/get_R.R | 19 - RInno-0.0.2/RInno/R/install_inno.R | 31 +-- RInno-0.0.2/RInno/R/setup.R | 30 +- RInno-0.0.2/RInno/README.md | 96 ++++----- RInno-0.0.2/RInno/build/vignette.rds |binary RInno-0.0.2/RInno/inst/app/www/RInno.png |only RInno-0.0.2/RInno/inst/doc/Introduction.R | 88 ++++---- RInno-0.0.2/RInno/inst/doc/Introduction.Rmd | 138 +++++++------ RInno-0.0.2/RInno/inst/doc/Introduction.html | 141 +++++++------- RInno-0.0.2/RInno/inst/doc/cont-installation.R |only RInno-0.0.2/RInno/inst/doc/cont-installation.Rmd |only RInno-0.0.2/RInno/inst/doc/cont-installation.html |only RInno-0.0.2/RInno/inst/installation |only RInno-0.0.2/RInno/man/code.Rd | 4 RInno-0.0.2/RInno/man/copy_installation.Rd |only RInno-0.0.2/RInno/man/create_app.Rd | 39 +-- RInno-0.0.2/RInno/man/create_bat.Rd | 2 RInno-0.0.2/RInno/man/create_config.Rd | 16 - RInno-0.0.2/RInno/man/create_pkgs.Rd | 2 RInno-0.0.2/RInno/man/directives.Rd | 8 RInno-0.0.2/RInno/man/example_app.Rd | 8 RInno-0.0.2/RInno/man/files.Rd | 2 RInno-0.0.2/RInno/man/get_R.Rd | 2 RInno-0.0.2/RInno/man/icons.Rd | 2 RInno-0.0.2/RInno/man/install_inno.Rd | 4 RInno-0.0.2/RInno/man/run.Rd | 2 RInno-0.0.2/RInno/man/setup.Rd | 30 +- RInno-0.0.2/RInno/man/start_iss.Rd | 2 RInno-0.0.2/RInno/man/tasks.Rd | 2 RInno-0.0.2/RInno/tests/testthat.R | 1 RInno-0.0.2/RInno/tests/testthat/test_code_run_tasks.R |only RInno-0.0.2/RInno/tests/testthat/test_copy_installation.R |only RInno-0.0.2/RInno/tests/testthat/test_create_app.R |only RInno-0.0.2/RInno/tests/testthat/test_create_config.R |only RInno-0.0.2/RInno/tests/testthat/test_directives.R |only RInno-0.0.2/RInno/tests/testthat/test_files.R |only RInno-0.0.2/RInno/tests/testthat/test_icons.R |only RInno-0.0.2/RInno/tests/testthat/test_setup.R |only RInno-0.0.2/RInno/vignettes/Introduction.Rmd | 138 +++++++------ RInno-0.0.2/RInno/vignettes/cont-installation.Rmd |only 61 files changed, 569 insertions(+), 528 deletions(-)
Title: Partial Orders and Relations
Description: Finds equivalence classes corresponding to a symmetric relation
or undirected graph. Finds total order consistent with partial order
or directed graph (so-called topological sort).
Author: Charles J. Geyer <charlie@stat.umn.edu>.
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between pooh versions 0.3-1 dated 2015-07-03 and 0.3-2 dated 2017-03-26
DESCRIPTION | 10 +++++----- MD5 | 17 ++++++++++------- NAMESPACE | 2 +- NEWS | 4 ++++ R/tsort.R | 5 ++--- R/weak.R | 4 ++-- src/Makevars |only src/init.c |only src/pooh.h |only src/tsort.c | 1 + src/weak.c | 1 + 11 files changed, 26 insertions(+), 18 deletions(-)
Title: Advanced Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between magick versions 0.3 dated 2016-09-06 and 0.4 dated 2017-03-26
DESCRIPTION | 12 LICENSE | 2 MD5 | 46 +-- NAMESPACE | 3 NEWS | 3 R/RcppExports.R | 18 + R/base.R | 11 R/coder.R | 4 R/edit.R | 10 R/onload.R | 6 R/transformations.R | 30 ++ build/vignette.rds |binary cleanup |only configure | 59 ---- inst/doc/intro.R | 17 - inst/doc/intro.Rmd | 17 - inst/doc/intro.html | 120 ++++----- man/config.Rd | 1 man/edit.Rd | 29 +- man/transformations.Rd | 52 ++-- src/RcppExports.cpp | 595 +++++++++++++++++++++++++----------------------- src/attributes.cpp | 39 +++ src/register.c |only src/transformations.cpp | 48 +++ vignettes/intro.Rmd | 17 - 25 files changed, 643 insertions(+), 496 deletions(-)
Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools that the author (Jacob) has written
for the purpose of more efficiently understanding and sharing the results of
(primarily) regression analyses. There are a number of functions focused
specifically on the interpretation and presentation of interactions in linear
models. Just about everything supports models from the survey package.
Author: Jacob A. Long [aut, cre]
Maintainer: Jacob A. Long <long.1377@osu.edu>
Diff between jtools versions 0.4.2 dated 2017-02-27 and 0.4.4 dated 2017-03-26
DESCRIPTION | 16 MD5 | 59 ++- NAMESPACE | 11 NEWS.md | 12 R/center_lm.R | 48 +- R/gscale.R | 97 ----- R/interact_plot.R | 18 - R/internal.R |only R/j_summary.R | 793 +++++++++++++++++++++++++++++++++++++-------- R/probe_interaction.R | 2 R/scale_lm.R | 37 +- R/svycor.R | 10 R/wgttest.R |only README.md | 403 +++++++++------------- build/vignette.rds |binary inst/CITATION |only inst/doc/interactions.Rmd | 2 inst/doc/interactions.html | 7 inst/doc/j_summ.Rmd | 2 inst/doc/j_summ.html | 4 inst/doc/svycor.html | 4 man/gscale.Rd | 33 - man/j_summ.Rd | 31 + man/probe_interaction.Rd | 2 man/svycor.Rd | 10 man/wgttest.Rd |only tests |only tools |only vignettes/interactions.Rmd | 2 vignettes/j_summ.Rmd | 2 30 files changed, 1030 insertions(+), 575 deletions(-)
Title: Risk Measures for (Financial) Networks
Description: Implements some risk measures for (financial) networks, such as DebtRank, Impact Susceptibility, Impact Diffusion and Impact Fluidity.
Author: Carlos Cinelli <carloscinelli@hotmail.com>, Thiago Cristiano Silva
<thiagochris@gmail.com>
Maintainer: Carlos Cinelli <carloscinelli@hotmail.com>
Diff between NetworkRiskMeasures versions 0.1.1 dated 2017-01-10 and 0.1.2 dated 2017-03-26
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++++----------- R/risk_matrices.R | 25 +++++++++++++++++++++++-- README.md | 10 +++++----- man/communicability_matrix.Rd | 1 - man/contagion.Rd | 1 - man/criticality.Rd | 1 - man/impact_susceptibility.Rd | 5 +++-- man/matrix_estimation.Rd | 3 ++- man/risk_matrix.Rd | 5 +++-- man/sim_data.Rd | 1 - tests/testthat/test_1_risk_com.R | 23 +++++++++++++++++++++++ tools |only 13 files changed, 78 insertions(+), 31 deletions(-)
More information about NetworkRiskMeasures at CRAN
Permanent link
Title: R Tools for Data Copy-Pasta
Description: RStudio addins and R functions that make copy-pasting vectors and tables to text painless.
Author: Miles McBain [aut, cre],
Jonathan Carroll [aut]
Maintainer: Miles McBain <miles.mcbain@gmail.com>
Diff between datapasta versions 1.1.0 dated 2017-01-09 and 2.0.0 dated 2017-03-26
DESCRIPTION | 10 - LICENSE | 2 MD5 | 65 ++++-- NAMESPACE | 13 + NEWS.md | 12 + R/df_paste.R | 127 +++++++++--- R/dpasta.R |only R/tribble_paste.R | 308 ++++++++++++++++++++++++------- R/vector_paste.R | 217 ++++++++++++++------- README.md | 55 +++-- build/vignette.rds |binary inst/doc/how-to-datapasta.R | 69 +++++- inst/doc/how-to-datapasta.Rmd | 147 ++++++++++++-- inst/doc/how-to-datapasta.html | 125 ++++++++++-- inst/media/tribble_paste.gif |binary man/custom_context.Rd |only man/df_construct.Rd |only man/df_format.Rd |only man/df_paste.Rd | 12 - man/dmdclip.Rd |only man/dp_set_decimal_mark.Rd |only man/dp_set_max_rows.Rd |only man/dpasta.Rd |only man/escape_chars.Rd |only man/guess_output_context.Rd |only man/nchar_type.Rd |only man/parse_vector.Rd | 5 man/render_type.Rd | 8 man/tribble_construct.Rd |only man/tribble_format.Rd |only man/tribble_paste.Rd | 12 - man/vector_construct.Rd |only man/vector_construct_vertical.Rd |only man/vector_format.Rd |only man/vector_format_vertical.Rd |only man/vector_paste.Rd | 12 - man/vector_paste_vertical.Rd | 11 - tests/testthat/comma_delim.txt |only tests/testthat/empty_final_col_comma.txt |only tests/testthat/test_dfpaste.R | 31 ++- tests/testthat/test_tribble.R | 146 +++++++++++++- tests/testthat/test_vector.R | 141 +++++++------- vignettes/how-to-datapasta.Rmd | 147 ++++++++++++-- 43 files changed, 1282 insertions(+), 393 deletions(-)
Title: Classification, Regression and Feature Evaluation
Description: This is a suite of machine learning algorithms written in C++ with R
interface. It contains several machine learning model learning techniques in
classification and regression, for example classification and regression trees with
optional constructive induction and models in the leaves, random forests, kNN,
naive Bayes, and locally weighted regression. All predictions obtained with these
models can be explained and visualized with ExplainPrediction package.
The package is especially strong in feature evaluation where it contains several variants of
Relief algorithm and many impurity based attribute evaluation functions, e.g., Gini,
information gain, MDL, and DKM. These methods can be used for example to discretize
numeric attributes.
Its additional feature is OrdEval algorithm and its visualization used for evaluation
of data sets with ordinal features and class, enabling analysis according to the
Kano model of customer satisfaction.
Several algorithms support parallel multithreaded execution via OpenMP.
The top-level documentation is reachable through ?CORElearn.
Author: Marko Robnik-Sikonja and Petr Savicky
Maintainer: "Marko Robnik-Sikonja" <marko.robnik@fri.uni-lj.si>
Diff between CORElearn versions 1.48.0 dated 2016-07-25 and 1.50.1 dated 2017-03-26
CORElearn-1.48.0/CORElearn/src/platform.h |only CORElearn-1.50.1/CORElearn/ChangeLog | 209 - CORElearn-1.50.1/CORElearn/DESCRIPTION | 10 CORElearn-1.50.1/CORElearn/MD5 | 181 - CORElearn-1.50.1/CORElearn/NAMESPACE | 52 CORElearn-1.50.1/CORElearn/R/Rinterface.R | 2287 +++++++++----------- CORElearn-1.50.1/CORElearn/R/dataGenerator.R | 438 +-- CORElearn-1.50.1/CORElearn/R/init.R | 10 CORElearn-1.50.1/CORElearn/R/ordEval.R | 948 ++++---- CORElearn-1.50.1/CORElearn/R/rfVisualize.R | 1082 ++++----- CORElearn-1.50.1/CORElearn/R/testCore.R | 610 ++--- CORElearn-1.50.1/CORElearn/R/util.R | 1242 +++++----- CORElearn-1.50.1/CORElearn/cleanup |only CORElearn-1.50.1/CORElearn/cleanup.win |only CORElearn-1.50.1/CORElearn/configure.win |only CORElearn-1.50.1/CORElearn/man/CORElearn-package.Rd | 19 CORElearn-1.50.1/CORElearn/man/CoreModel.Rd | 20 CORElearn-1.50.1/CORElearn/man/attrEval.Rd | 8 CORElearn-1.50.1/CORElearn/man/calibrate.Rd | 35 CORElearn-1.50.1/CORElearn/man/classPrototypes.Rd | 2 CORElearn-1.50.1/CORElearn/man/destroyModels.Rd | 2 CORElearn-1.50.1/CORElearn/man/discretize.Rd | 19 CORElearn-1.50.1/CORElearn/man/display.CoreModel.Rd | 122 - CORElearn-1.50.1/CORElearn/man/helpCore.Rd | 2 CORElearn-1.50.1/CORElearn/man/modelEval.Rd | 13 CORElearn-1.50.1/CORElearn/man/ordEval.Rd | 274 +- CORElearn-1.50.1/CORElearn/man/plot.ordEval.Rd | 9 CORElearn-1.50.1/CORElearn/man/reliabiltyPlot.Rd |only CORElearn-1.50.1/CORElearn/man/rfOOB.Rd | 106 CORElearn-1.50.1/CORElearn/man/rfOutliers.Rd | 3 CORElearn-1.50.1/CORElearn/man/saveRF.Rd | 1 CORElearn-1.50.1/CORElearn/man/testCore.Rd | 4 CORElearn-1.50.1/CORElearn/src/Rconvert.cpp | 4 CORElearn-1.50.1/CORElearn/src/Rfront.cpp | 139 - CORElearn-1.50.1/CORElearn/src/binarize.cpp | 4 CORElearn-1.50.1/CORElearn/src/binarizeReg.cpp | 3 CORElearn-1.50.1/CORElearn/src/binnodeReg.h | 2 CORElearn-1.50.1/CORElearn/src/binpart.cpp | 7 CORElearn-1.50.1/CORElearn/src/bintree.cpp | 2 CORElearn-1.50.1/CORElearn/src/bintreeReg.cpp | 2 CORElearn-1.50.1/CORElearn/src/c45read.cpp | 10 CORElearn-1.50.1/CORElearn/src/calibrate.cpp | 13 CORElearn-1.50.1/CORElearn/src/constrct.cpp | 6 CORElearn-1.50.1/CORElearn/src/constrctReg.cpp | 7 CORElearn-1.50.1/CORElearn/src/contain.h | 4 CORElearn-1.50.1/CORElearn/src/cost.cpp | 7 CORElearn-1.50.1/CORElearn/src/dataStore.cpp | 28 CORElearn-1.50.1/CORElearn/src/dataStore.h | 3 CORElearn-1.50.1/CORElearn/src/error.cpp | 6 CORElearn-1.50.1/CORElearn/src/estCommon.cpp | 4 CORElearn-1.50.1/CORElearn/src/estOrdAttr.cpp | 8 CORElearn-1.50.1/CORElearn/src/estimator.cpp | 7 CORElearn-1.50.1/CORElearn/src/estimatorReg.cpp | 5 CORElearn-1.50.1/CORElearn/src/expr.cpp | 5 CORElearn-1.50.1/CORElearn/src/exprReg.cpp | 2 CORElearn-1.50.1/CORElearn/src/exprReg.h | 2 CORElearn-1.50.1/CORElearn/src/frontend.cpp | 12 CORElearn-1.50.1/CORElearn/src/ftree.cpp | 8 CORElearn-1.50.1/CORElearn/src/ftree.h | 1 CORElearn-1.50.1/CORElearn/src/general.h | 1 CORElearn-1.50.1/CORElearn/src/kdtree.cpp | 5 CORElearn-1.50.1/CORElearn/src/mathutil.cpp | 3 CORElearn-1.50.1/CORElearn/src/menu.cpp | 6 CORElearn-1.50.1/CORElearn/src/menu.h | 4 CORElearn-1.50.1/CORElearn/src/mlist.h | 2 CORElearn-1.50.1/CORElearn/src/model.cpp | 8 CORElearn-1.50.1/CORElearn/src/modelReg.cpp | 8 CORElearn-1.50.1/CORElearn/src/mstring.cpp | 7 CORElearn-1.50.1/CORElearn/src/mstring.h | 1 CORElearn-1.50.1/CORElearn/src/new_new.cpp | 4 CORElearn-1.50.1/CORElearn/src/new_new.h | 4 CORElearn-1.50.1/CORElearn/src/nrutil.cpp | 11 CORElearn-1.50.1/CORElearn/src/options.cpp | 1822 +++++++-------- CORElearn-1.50.1/CORElearn/src/options.h | 6 CORElearn-1.50.1/CORElearn/src/printUtil.cpp | 6 CORElearn-1.50.1/CORElearn/src/prune.cpp | 5 CORElearn-1.50.1/CORElearn/src/pruneReg.cpp | 4 CORElearn-1.50.1/CORElearn/src/random.cpp | 2 CORElearn-1.50.1/CORElearn/src/random.h | 4 CORElearn-1.50.1/CORElearn/src/regtree.cpp | 7 CORElearn-1.50.1/CORElearn/src/regtree.h | 3 CORElearn-1.50.1/CORElearn/src/relieff.cpp | 3 CORElearn-1.50.1/CORElearn/src/rfRegularize.cpp | 7 CORElearn-1.50.1/CORElearn/src/rfUtil.cpp | 3 CORElearn-1.50.1/CORElearn/src/rfVisual.cpp | 6 CORElearn-1.50.1/CORElearn/src/rfVisualFront.cpp | 16 CORElearn-1.50.1/CORElearn/src/rndforest.cpp | 7 CORElearn-1.50.1/CORElearn/src/rrelieff.cpp | 25 CORElearn-1.50.1/CORElearn/src/treenode.cpp | 6 CORElearn-1.50.1/CORElearn/src/treenodeReg.cpp | 5 CORElearn-1.50.1/CORElearn/src/trutil.cpp | 10 CORElearn-1.50.1/CORElearn/src/trutilReg.cpp | 11 CORElearn-1.50.1/CORElearn/src/utils.cpp | 11 CORElearn-1.50.1/CORElearn/src/utils.h | 5 94 files changed, 5111 insertions(+), 4936 deletions(-)
Title: Aster Models
Description: Aster models are exponential family regression models for life
history analysis. They are like generalized linear models except that
elements of the response vector can have different families (e. g.,
some Bernoulli, some Poisson, some zero-truncated Poisson, some normal)
and can be dependent, the dependence indicated by a graphical structure.
Discrete time survival analysis, zero-inflated Poisson regression, and
generalized linear models that are exponential family (e. g., logistic
regression and Poisson regression with log link) are special cases.
Main use is for data in which there is survival over discrete time periods
and there is additional data about what happens conditional on survival
(e. g., number of offspring). Uses the exponential family canonical
parameterization (aster transform of usual parameterization).
Unlike the aster package, this package does dependence groups (nodes of
the graph need not be conditionally independent given their predecessor
node), including multinomial and two-parameter normal as families. Thus
this package also generalizes mark-capture-recapture analysis.
Author: Charles J. Geyer <charlie@stat.umn.edu>.
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between aster2 versions 0.2-1 dated 2015-05-11 and 0.3 dated 2017-03-26
aster2-0.2-1/aster2/inst/makedata/echinacea.Rout |only aster2-0.2-1/aster2/inst/makedata/sim.Rout |only aster2-0.2-1/aster2/inst/makedata/test1.Rout |only aster2-0.2-1/aster2/inst/makedata/toy.Rout |only aster2-0.3/aster2/DESCRIPTION | 11 aster2-0.3/aster2/MD5 | 77 ++-- aster2-0.3/aster2/NAMESPACE | 7 aster2-0.3/aster2/NEWS | 16 + aster2-0.3/aster2/R/asterdata.R | 13 aster2-0.3/aster2/R/constancy.R | 10 aster2-0.3/aster2/R/families.R | 22 - aster2-0.3/aster2/R/logl.R | 5 aster2-0.3/aster2/R/transform.R | 360 +++++++++++------------ aster2-0.3/aster2/man/aster2-package.Rd | 14 aster2-0.3/aster2/man/asterdata.Rd | 165 ++++++---- aster2-0.3/aster2/man/cumulant.Rd | 2 aster2-0.3/aster2/man/families.Rd | 2 aster2-0.3/aster2/man/link.Rd | 6 aster2-0.3/aster2/man/test1.Rd | 2 aster2-0.3/aster2/man/transform.Rd | 33 +- aster2-0.3/aster2/src/Makevars | 2 aster2-0.3/aster2/src/aster.h | 16 - aster2-0.3/aster2/src/constancy.c | 217 +++++++++---- aster2-0.3/aster2/src/families.c | 64 +++- aster2-0.3/aster2/src/families.h | 2 aster2-0.3/aster2/src/init.c | 130 +++----- aster2-0.3/aster2/src/util.c |only aster2-0.3/aster2/src/validate.c | 28 + aster2-0.3/aster2/tests/asterdata.Rout.save | 10 aster2-0.3/aster2/tests/constancy.R | 316 ++++++++++++++++---- aster2-0.3/aster2/tests/constancy.Rout.save | 330 +++++++++++++++++---- aster2-0.3/aster2/tests/echinacea-cond.R | 2 aster2-0.3/aster2/tests/echinacea-cond.Rout.save | 41 -- aster2-0.3/aster2/tests/echinacea.R | 9 aster2-0.3/aster2/tests/echinacea.Rout.save | 48 --- aster2-0.3/aster2/tests/fam-degen.R |only aster2-0.3/aster2/tests/fam-degen.Rout.save |only aster2-0.3/aster2/tests/families.Rout.save | 10 aster2-0.3/aster2/tests/logl.Rout.save | 10 aster2-0.3/aster2/tests/subset.Rout.save | 10 aster2-0.3/aster2/tests/transform.Rout.save | 10 aster2-0.3/aster2/tests/valid.R |only aster2-0.3/aster2/tests/valid.Rout.save |only aster2-0.3/aster2/tests/zeros.R |only aster2-0.3/aster2/tests/zeros.Rout.save |only 45 files changed, 1308 insertions(+), 692 deletions(-)
Title: Generator of Semi-Artificial Data
Description: Contains methods to generate and evaluate semi-artificial data sets.
Based on a given data set different methods learn data properties using machine learning algorithms and
generate new data with the same properties.
The package currently includes the following data generators:
i) a RBF network based generator using rbfDDA() from package 'RSNNS',
ii) a Random Forest based generator for both classification and regression problems
iii) a density forest based generator for unsupervised data
Data evaluation support tools include:
a) single attribute based statistical evaluation: mean, median, standard deviation, skewness, kurtosis, medcouple, L/RMC, KS test, Hellinger distance
b) evaluation based on clustering using Adjusted Rand Index (ARI) and FM
c) evaluation based on classification performance with various learning models, e.g., random forests.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>
Diff between semiArtificial versions 2.0.1 dated 2015-09-03 and 2.2.4 dated 2017-03-26
semiArtificial-2.0.1/semiArtificial/man/ariCompare.Rd |only semiArtificial-2.2.4/semiArtificial/ChangeLog | 5 semiArtificial-2.2.4/semiArtificial/DESCRIPTION | 26 semiArtificial-2.2.4/semiArtificial/MD5 | 31 semiArtificial-2.2.4/semiArtificial/NAMESPACE | 17 semiArtificial-2.2.4/semiArtificial/R/dataQuality.R | 879 ++++---- semiArtificial-2.2.4/semiArtificial/R/densityTree.R | 6 semiArtificial-2.2.4/semiArtificial/R/forestDataGen.R | 1010 ++++++---- semiArtificial-2.2.4/semiArtificial/R/misc.R | 616 +++--- semiArtificial-2.2.4/semiArtificial/R/rbfDataGen.R | 19 semiArtificial-2.2.4/semiArtificial/R/rndtrees.R | 96 semiArtificial-2.2.4/semiArtificial/man/cleanData.Rd |only semiArtificial-2.2.4/semiArtificial/man/dsClustCompare.Rd |only semiArtificial-2.2.4/semiArtificial/man/newdata.Rd | 18 semiArtificial-2.2.4/semiArtificial/man/performanceCompare.Rd | 4 semiArtificial-2.2.4/semiArtificial/man/rbfDataGen.Rd | 5 semiArtificial-2.2.4/semiArtificial/man/semiArtificial-package.Rd | 2 semiArtificial-2.2.4/semiArtificial/man/treeEnsemble.Rd | 7 18 files changed, 1627 insertions(+), 1114 deletions(-)
More information about semiArtificial at CRAN
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Title: 'Rcpp' Bindings to Parser for Tom's Obvious Markup Language
Description: The configuration format defined by 'TOML' (which expands to
"Tom's Obvious Markup Language") specifies an excellent format (described at
<https://github.com/toml-lang/toml>) suitable for both human editing as well
as the common uses of a machine-readable format. This package uses 'Rcpp' to
connect the 'cpptoml' parser written by Chase Geigle (in modern C++11) to R.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppTOML versions 0.1.1 dated 2017-02-12 and 0.1.2 dated 2017-03-26
ChangeLog | 43 +++++++++++++++++++++++- DESCRIPTION | 8 ++-- MD5 | 21 ++++++----- NAMESPACE | 12 +++--- README.md | 76 +++++++++++++++++++++++++++++++++++++++++++ inst/NEWS.Rd | 18 +++++++++- inst/toml/ex4.toml | 2 - inst/toml/example.toml | 12 +----- src/init.c |only src/parse.cpp | 21 +++++++++++ tests/arrays.Rout.save | 44 +++++++++++++----------- tests/tomlExamples.Rout.save | 61 ++++++++++++++++++---------------- 12 files changed, 235 insertions(+), 83 deletions(-)
Title: Data Analysis in Ecology
Description: Miscellaneous functions for data analysis in ecology, with special emphasis on spatial data.
Author: Patrick Giraudoux <patrick.giraudoux@univ-fcomte.fr>
Maintainer: Patrick Giraudoux <patrick.giraudoux@univ-fcomte.fr>
Diff between pgirmess versions 1.6.5 dated 2016-09-25 and 1.6.6 dated 2017-03-26
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/distSeg.r | 10 ++++++++-- R/transLines2pix.r | 2 ++ data/preybiom.rda |binary data/siegelp179.rda |binary man/dirProj.rd | 2 +- man/distSeg.rd | 2 +- 8 files changed, 23 insertions(+), 15 deletions(-)
Title: Discovering Multiple, Statistically-Equivalent Signatures
Description: Feature selection methods for identifying minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin.
Author: Ioannis Tsamardinos, Vincenzo Lagani, Giorgos Athineou, Michail Tsagris, Giorgos Borboudakis, Anna Roumpelaki
Maintainer: Michail Tsagris <mtsagris@csd.uoc.gr>
Diff between MXM versions 0.9.8 dated 2017-02-20 and 0.9.9 dated 2017-03-26
DESCRIPTION | 8 - MD5 | 38 ++--- NAMESPACE | 2 R/MMPC.R | 138 ++++++++------------ R/MMPC.temporal.R | 38 ----- R/SES.R | 349 ++++++++++++++++++++++++--------------------------- R/SES.temporal.R | 90 +++---------- R/bs.reg.R | 18 +- R/dist.condi.R | 7 - R/fs.reg.R | 11 - R/mmhc.skel.R | 158 ++++++++++++++++------- R/mmmb.R | 12 - R/pc.skel.R | 31 ++-- R/rdag.R | 2 R/testIndClogit.R | 6 R/testIndGLMM.R | 54 ------- inst/doc/article.pdf |binary man/MXM-package.Rd | 4 man/mmhc.skel.Rd | 12 + man/testIndClogit.Rd | 2 20 files changed, 449 insertions(+), 531 deletions(-)
Title: Multivariate Linear Model with Analytic p-Values
Description: Allows a user to conduct multivariate multiple regression using analytic p-values rather than classic approximate F-tests.
Author: Daniel B. McArtor (dmcartor@nd.edu) [aut, cre]
Maintainer: Daniel B. McArtor <dmcartor@nd.edu>
Diff between MVLM versions 0.0.1 dated 2016-08-05 and 0.1.4 dated 2017-03-26
DESCRIPTION | 8 +-- MD5 | 22 ++++----- NAMESPACE | 1 NEWS.md | 13 +++++ R/MVLM-package.R | 6 +- R/mvlm.R | 81 ++++++++++++++++++++++------------- inst/doc/mvlm-vignette.Rmd | 4 - inst/doc/mvlm-vignette.html | 100 ++++++++++++++++++++++---------------------- man/MVLM-package.Rd | 6 +- man/mvlm.Rd | 16 +++---- man/summary.mvlm.Rd | 6 +- vignettes/mvlm-vignette.Rmd | 4 - 12 files changed, 150 insertions(+), 117 deletions(-)
Title: Analysis of Stable Matchings
Description: Implements structural estimators to correct for
the sample selection bias from observed outcomes in matching
markets. This includes one-sided matching of agents into
groups as well as two-sided matching of students to schools.
The package also contains algorithms to find stable matchings
in the three most common matching problems: the stable roommates
problem, the college admissions problem, and the house
allocation problem.
Author: Thilo Klein
Maintainer: Thilo Klein <thilo@klein.uk>
Diff between matchingMarkets versions 0.3-2 dated 2016-08-27 and 0.3-3 dated 2017-03-26
matchingMarkets-0.3-2/matchingMarkets/src/stabitCpp.cpp |only matchingMarkets-0.3-2/matchingMarkets/src/stabitCpp2.cpp |only matchingMarkets-0.3-2/matchingMarkets/src/stabitCpp3.cpp |only matchingMarkets-0.3-3/matchingMarkets/DESCRIPTION | 16 matchingMarkets-0.3-3/matchingMarkets/MD5 | 90 - matchingMarkets-0.3-3/matchingMarkets/NAMESPACE | 23 matchingMarkets-0.3-3/matchingMarkets/NEWS.md | 9 matchingMarkets-0.3-3/matchingMarkets/R/RcppExports.R | 19 matchingMarkets-0.3-3/matchingMarkets/R/hri.R | 216 ++- matchingMarkets-0.3-3/matchingMarkets/R/iaa.R |only matchingMarkets-0.3-3/matchingMarkets/R/plot.stabit2.R |only matchingMarkets-0.3-3/matchingMarkets/R/plp.R |only matchingMarkets-0.3-3/matchingMarkets/R/predict.stabit2.R |only matchingMarkets-0.3-3/matchingMarkets/R/print.stabit2.R |only matchingMarkets-0.3-3/matchingMarkets/R/print.summary.stabit2.R |only matchingMarkets-0.3-3/matchingMarkets/R/sri.R | 46 matchingMarkets-0.3-3/matchingMarkets/R/stabit.R | 147 +- matchingMarkets-0.3-3/matchingMarkets/R/stabit2.R | 620 +++++----- matchingMarkets-0.3-3/matchingMarkets/R/stabsim.R | 21 matchingMarkets-0.3-3/matchingMarkets/R/stabsim2.R | 62 - matchingMarkets-0.3-3/matchingMarkets/R/summary.stabit2.R |only matchingMarkets-0.3-3/matchingMarkets/R/ttc.R | 43 matchingMarkets-0.3-3/matchingMarkets/README.md | 26 matchingMarkets-0.3-3/matchingMarkets/build/vignette.rds |binary matchingMarkets-0.3-3/matchingMarkets/data/baac00.RData |binary matchingMarkets-0.3-3/matchingMarkets/data/klein15a.RData |binary matchingMarkets-0.3-3/matchingMarkets/data/klein15b.RData |binary matchingMarkets-0.3-3/matchingMarkets/inst/doc/matching.Rnw | 2 matchingMarkets-0.3-3/matchingMarkets/inst/doc/matching.pdf |binary matchingMarkets-0.3-3/matchingMarkets/man/baac00.Rd | 10 matchingMarkets-0.3-3/matchingMarkets/man/hri.Rd | 63 - matchingMarkets-0.3-3/matchingMarkets/man/iaa.Rd |only matchingMarkets-0.3-3/matchingMarkets/man/klein15a.Rd | 50 matchingMarkets-0.3-3/matchingMarkets/man/klein15b.Rd | 185 +- matchingMarkets-0.3-3/matchingMarkets/man/matchingMarkets-package.Rd | 6 matchingMarkets-0.3-3/matchingMarkets/man/plp.Rd |only matchingMarkets-0.3-3/matchingMarkets/man/predict.stabit2.Rd |only matchingMarkets-0.3-3/matchingMarkets/man/sri.Rd | 30 matchingMarkets-0.3-3/matchingMarkets/man/stabit.Rd | 121 - matchingMarkets-0.3-3/matchingMarkets/man/stabit2.Rd | 52 matchingMarkets-0.3-3/matchingMarkets/man/stabsim.Rd | 2 matchingMarkets-0.3-3/matchingMarkets/man/stabsim2.Rd | 20 matchingMarkets-0.3-3/matchingMarkets/man/ttc.Rd | 25 matchingMarkets-0.3-3/matchingMarkets/src/Makevars | 3 matchingMarkets-0.3-3/matchingMarkets/src/Makevars.win | 3 matchingMarkets-0.3-3/matchingMarkets/src/RcppExports.cpp | 93 + matchingMarkets-0.3-3/matchingMarkets/src/matchingMarkets_init.c |only matchingMarkets-0.3-3/matchingMarkets/src/stabit2Mat1.cpp |only matchingMarkets-0.3-3/matchingMarkets/src/stabit2Sel1.cpp |only matchingMarkets-0.3-3/matchingMarkets/src/stabit2Sel2.cpp |only matchingMarkets-0.3-3/matchingMarkets/src/stabitSel2.cpp |only matchingMarkets-0.3-3/matchingMarkets/vignettes/Sections/1_Introduction.tex | 108 + matchingMarkets-0.3-3/matchingMarkets/vignettes/Sections/4_MonteCarloResults.Rnw | 89 - matchingMarkets-0.3-3/matchingMarkets/vignettes/matching.Rnw | 2 matchingMarkets-0.3-3/matchingMarkets/vignettes/matching.bib | 13 55 files changed, 1249 insertions(+), 966 deletions(-)
More information about matchingMarkets at CRAN
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Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] (Reviews the documentation),
Florian De Boissieu [ctb] (Fixed bugs and improved catalog features),
Andrew Sánchez Meador [ctb] (Helped to review the documentation)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between lidR versions 1.1.0 dated 2017-02-05 and 1.2.0 dated 2017-03-26
DESCRIPTION | 33 ++-- MD5 | 78 ++++++---- NAMESPACE | 7 NEWS.md | 51 +++++- R/RcppExports.R | 8 + R/catalog_query.r | 2 R/grid_canopy.r | 24 +-- R/grid_hexametrics.r |only R/grid_terrain.r | 36 +--- R/grid_tincanopy.r |only R/las-class.r | 249 +++++++++++++++++++++++---------- R/lascheck.r | 36 ++++ R/lascolor.r | 4 R/lasfilter.r | 14 - R/lasground.r |only R/lasnormalize.r | 91 ++++++------ R/lastrees.r | 29 +-- R/lidRError.r | 1 R/metrics.r | 36 ++-- R/plot.lashexametrics.r |only R/readLAS.r | 22 ++ R/utils_interpolations.r | 98 +++++------- R/utils_misc.r | 2 README.md | 2 man/LAD.Rd | 4 man/LAS.Rd | 4 man/gap_fraction_profile.Rd | 4 man/grid_canopy.Rd | 24 +-- man/grid_hexametrics.Rd |only man/grid_terrain.Rd | 13 - man/grid_tincanopy.Rd |only man/lasground.Rd |only man/lasnormalize.Rd | 49 +++--- man/lastrees.Rd | 17 -- man/plot.lashexametrics.Rd |only src/QuadTree.cpp |only src/QuadTree.h |only src/RcppExports.cpp | 28 +++ src/algo_li2012.cpp | 16 +- src/cxx_utils.cpp | 42 +++++ src/init.c |only src/morphology.cpp |only src/points_in_polygons.cpp | 32 +++- tests/testthat/test-catalog.R |only tests/testthat/test-grid_hexametrics.R |only tests/testthat/test-grid_metrics.R | 2 tests/testthat/test-lasnormalize.R |only tests/testthat/test-stdmetric.R |only 48 files changed, 667 insertions(+), 391 deletions(-)
Title: Generalized Multistate Simulation Model
Description: Simulate and analyze multistate models with general hazard
functions. gems provides functionality for the preparation of hazard functions
and parameters, simulation from a general multistate model and predicting future
events. The multistate model is not required to be a Markov model and may take
the history of previous events into account. In the basic version, it allows
to simulate from transition-specific hazard function, whose parameters are
multivariable normally distributed.
Author: Luisa Salazar Vizcaya, Nello Blaser, Thomas Gsponer
Maintainer: Luisa Salazar Vizcaya <luisapaola.salazarvizcaya@insel.ch>
Diff between gems versions 1.1.0 dated 2016-11-29 and 1.1.1 dated 2017-03-26
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/vignette.rds |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Distance-Based Measures of Spatial Structures
Description: Simple computation of spatial statistic functions of distance to characterize the spatial structures of mapped objects, including classical ones (Ripley's K and others) and more recent ones used by spatial economists (Duranton and Overman's Kd, Marcon and Puech's M). Relies on 'spatstat' for some core calculation.
Author: Eric Marcon, Gabriel Lang, Stephane Traissac, Florence Puech
Maintainer: Eric Marcon <Eric.Marcon@ecofog.gf>
Diff between dbmss versions 2.3-0 dated 2016-09-18 and 2.4-0 dated 2017-03-26
DESCRIPTION | 12 ++++++------ MD5 | 19 ++++++++++--------- NAMESPACE | 43 ++++++++++++++++++++++++++++++++++++++++--- NEWS | 17 ++++++++++++++++- R/RcppExports.R | 2 +- R/envelope.Dtable.R | 4 ++-- R/ghat.R | 2 +- build/vignette.rds |binary inst/doc/dbmss.pdf |binary src/RcppExports.cpp | 46 +++++++++++++++++++++++----------------------- src/init.c |only 11 files changed, 99 insertions(+), 46 deletions(-)
Title: Find Data-Only Packages on CRAN
Description: Provides a data frame listing of known data-only and data-heavy
packages available on CRAN.
Author: Thomas J. Leeper [aut, cre]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between crandatapkgs versions 0.1.5 dated 2016-08-02 and 0.1.7 dated 2017-03-26
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- inst/packages/packages | 24 +++++++++++++++++++++++- 3 files changed, 30 insertions(+), 8 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-16 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-08-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-08 1.0.1
2016-07-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-28 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-22 0.6.1
2014-03-16 0.5.1
2014-03-15 0.5.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-16 1.1.5
2015-08-01 1.1.3
2015-07-21 1.1.1
2015-01-03 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-09 1.0.1
2015-05-03 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-28 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-16 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-13 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-29 0.7.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-07-29 0.7-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-06-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-30 2.2.1
2012-09-17 2.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-10 1.3
2015-07-29 1.2
2014-07-10 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-26 2.0
2015-02-06 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2007-11-30 1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-21 0.3.1
2015-04-20 0.3
2014-06-23 0.2
2014-05-19 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-08 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-18 0.99.21
2015-10-16 0.99.18
2015-08-01 0.99.16
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-30 0.0-8
2014-04-27 0.0-7
2014-04-18 0.0-6
2012-04-10 0.0-5
2011-09-20 0.0-4
2010-05-22 0.0-3
2009-10-12 0.0-2
2009-09-28 0.0-1
More information about NetworkInference at CRAN
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Title: Generalized Autoregressive Score Models
Description: Simulate, estimate and forecast using univariate and multivariate GAS models.
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>
Diff between GAS versions 0.1.5 dated 2016-11-19 and 0.1.6 dated 2017-03-26
GAS-0.1.5/GAS/R/OptimiserWrap.R |only GAS-0.1.5/GAS/inst/doc/GAS_vignette_0.1.4.Rnw |only GAS-0.1.5/GAS/inst/doc/GAS_vignette_0.1.4.pdf |only GAS-0.1.5/GAS/inst/test |only GAS-0.1.5/GAS/vignettes/CumLogScore_Multi.pdf |only GAS-0.1.5/GAS/vignettes/GAS_vignette_0.1.4.Rnw |only GAS-0.1.6/GAS/ChangeLog | 20 GAS-0.1.6/GAS/DESCRIPTION | 9 GAS-0.1.6/GAS/MD5 | 174 +- GAS-0.1.6/GAS/NAMESPACE | 10 GAS-0.1.6/GAS/R/BackTest.R | 2 GAS-0.1.6/GAS/R/ClassMethods.R | 1785 ++++++++++++++----------- GAS-0.1.6/GAS/R/Distributions.R | 18 GAS-0.1.6/GAS/R/Estimate.R | 89 - GAS-0.1.6/GAS/R/Figures.R | 143 +- GAS-0.1.6/GAS/R/Forecast.R | 141 + GAS-0.1.6/GAS/R/GASspec.R | 47 GAS-0.1.6/GAS/R/Likelihood.R |only GAS-0.1.6/GAS/R/OptimiserWrapper.R |only GAS-0.1.6/GAS/R/RcppExports.R | 114 - GAS-0.1.6/GAS/R/Simulate.R | 62 GAS-0.1.6/GAS/R/StartingValues.R | 20 GAS-0.1.6/GAS/R/Testing.R | 45 GAS-0.1.6/GAS/R/Utils.R | 64 GAS-0.1.6/GAS/README.md |only GAS-0.1.6/GAS/build/partial.rdb |binary GAS-0.1.6/GAS/build/vignette.rds |binary GAS-0.1.6/GAS/inst/CITATION |only GAS-0.1.6/GAS/inst/ExtensionTests |only GAS-0.1.6/GAS/inst/doc/AddNewDistribution.pdf |binary GAS-0.1.6/GAS/inst/doc/GAS_vignette_0.1.6.Rnw |only GAS-0.1.6/GAS/inst/doc/GAS_vignette_0.1.6.pdf |only GAS-0.1.6/GAS/inst/doc/VaRPrediction_0.1.5.pdf |binary GAS-0.1.6/GAS/man/BacktestDensity.Rd | 36 GAS-0.1.6/GAS/man/BacktestVaR.Rd | 42 GAS-0.1.6/GAS/man/Bounds.Rd | 10 GAS-0.1.6/GAS/man/ConfidenceBands.Rd | 14 GAS-0.1.6/GAS/man/DistInfo.Rd | 4 GAS-0.1.6/GAS/man/Distributions.Rd | 16 GAS-0.1.6/GAS/man/GAS-package.Rd | 34 GAS-0.1.6/GAS/man/MultiGASFit.Rd | 96 - GAS-0.1.6/GAS/man/MultiGASFor.Rd | 14 GAS-0.1.6/GAS/man/MultiGASRoll.Rd | 13 GAS-0.1.6/GAS/man/MultiGASSim.Rd | 55 GAS-0.1.6/GAS/man/MultiGASSpec.Rd | 35 GAS-0.1.6/GAS/man/MultiMapParameters.Rd | 10 GAS-0.1.6/GAS/man/MultiUnmapParameters.Rd | 12 GAS-0.1.6/GAS/man/PIT_test.Rd | 41 GAS-0.1.6/GAS/man/StockIndices.Rd | 9 GAS-0.1.6/GAS/man/UniGASFit.Rd | 135 + GAS-0.1.6/GAS/man/UniGASFor.Rd | 20 GAS-0.1.6/GAS/man/UniGASRoll.Rd | 13 GAS-0.1.6/GAS/man/UniGASSim.Rd | 64 GAS-0.1.6/GAS/man/UniGASSpec.Rd | 40 GAS-0.1.6/GAS/man/UniMapParameters.Rd | 8 GAS-0.1.6/GAS/man/UniUnmapParameters.Rd | 8 GAS-0.1.6/GAS/man/cpichg.Rd | 11 GAS-0.1.6/GAS/man/dji30ret.Rd | 5 GAS-0.1.6/GAS/man/fn.solnp.Rd |only GAS-0.1.6/GAS/man/mGASFit-class.Rd | 29 GAS-0.1.6/GAS/man/mGASFor-class.Rd | 6 GAS-0.1.6/GAS/man/mGASRoll-class.Rd | 29 GAS-0.1.6/GAS/man/mGASSim-class.Rd | 7 GAS-0.1.6/GAS/man/mGASSpec-class.Rd | 3 GAS-0.1.6/GAS/man/method-plot.Rd |only GAS-0.1.6/GAS/man/sp500ret.Rd | 6 GAS-0.1.6/GAS/man/sp500rv.Rd | 3 GAS-0.1.6/GAS/man/tqdata.Rd | 5 GAS-0.1.6/GAS/man/uGASFit-class.Rd | 28 GAS-0.1.6/GAS/man/uGASFor-class.Rd | 3 GAS-0.1.6/GAS/man/uGASRoll-class.Rd | 31 GAS-0.1.6/GAS/man/usunp.Rd | 9 GAS-0.1.6/GAS/src/Filters.cpp | 55 GAS-0.1.6/GAS/src/GASInnovation.cpp | 2 GAS-0.1.6/GAS/src/IMWrap.cpp | 2 GAS-0.1.6/GAS/src/Mapping.cpp | 186 +- GAS-0.1.6/GAS/src/Mapping.h | 3 GAS-0.1.6/GAS/src/Optimiser.cpp | 1 GAS-0.1.6/GAS/src/RcppExports.cpp | 712 ++------- GAS-0.1.6/GAS/src/Utils.cpp | 2 GAS-0.1.6/GAS/src/ast.cpp | 24 GAS-0.1.6/GAS/src/crps.cpp | 1 GAS-0.1.6/GAS/src/gamma.cpp | 1 GAS-0.1.6/GAS/src/mvnorm.cpp | 3 GAS-0.1.6/GAS/src/mvt.cpp | 8 GAS-0.1.6/GAS/src/registerDynamicSymbols.c |only GAS-0.1.6/GAS/src/sstd.cpp | 19 GAS-0.1.6/GAS/src/std.cpp | 1 GAS-0.1.6/GAS/tests |only GAS-0.1.6/GAS/vignettes/Figure1.pdf |only GAS-0.1.6/GAS/vignettes/GAS_vignette_0.1.6.Rnw |only 91 files changed, 2548 insertions(+), 2119 deletions(-)
Title: Tools for Functional Response Analysis
Description: Tools to support sensible statistics for functional response analysis.
Author: Daniel Pritchard [aut, cre],
Daniel Barrios-O'Neill [ctb],
Helene Bovy [ctb],
Rachel Paterson [ctb]
Maintainer: Daniel Pritchard <daniel@pritchard.co>
Diff between frair versions 0.5 dated 2016-04-23 and 0.5.100 dated 2017-03-26
DESCRIPTION | 8 +++--- MD5 | 38 ++++++++++++++-------------- NEWS.md | 19 ++++++++++++-- R/frair_boot.R | 4 +-- R/frair_boot_methods.R | 4 +-- R/frair_fit_methods.R | 2 - R/frair_responses.R | 2 - R/frair_test.R | 18 ++++++------- man/bythotrephes.Rd | 2 - man/fr_emdII.Rd | 6 ++-- man/fr_flexp.Rd | 2 - man/fr_flexpnr.Rd | 8 +++--- man/fr_rogersII.Rd | 11 ++++++-- man/frair-package.Rd | 2 - man/frair_boot.Rd | 2 - man/frair_boot_methods.Rd | 2 - man/frair_compare.Rd | 4 +-- man/frair_fit.Rd | 61 ++++++++++++++++++++++++++++++++++++++++------ man/frair_fit_methods.Rd | 2 - man/gammarus.Rd | 2 - 20 files changed, 132 insertions(+), 67 deletions(-)
Title: Family Age-at-Onset Data Simulation and Penetrance Estimation
Description: Simulates age-at-onset traits associated with a segregating major gene in family data
obtained from population-based, clinic-based, or multi-stage designs. Appropriate ascertainment
correction is utilized to estimate age-dependent penetrance functions either parametrically from
the fitted model or nonparametrically from the data. The Expectation and Maximization algorithm
can infer missing genotypes and carrier probabilities estimated from family's genotype and
phenotype information or from a fitted model. Plot functions include pedigrees of simulated
families and predicted penetrance curves based on specified parameter values.
Author: Yun-Hee Choi, Karen Kopciuk, Wenqing He, Laurent Briollais
Maintainer: Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>
Diff between FamEvent versions 1.2 dated 2016-09-30 and 1.3 dated 2017-03-26
DESCRIPTION | 8 ++-- MD5 | 53 +++++++++++++++------------ NAMESPACE | 13 ++++-- R/parents.g.R | 6 +-- R/pen.ci.R | 20 +++++----- R/penci.R |only R/penf.R | 16 +++++--- R/penmodel.R | 74 ++++++++++++++++++++++---------------- R/penmodelEM.R | 80 ++++++++++++++++++++++++------------------ R/penplot.R | 56 +++++++++++++++++++---------- R/plot.penmodel.R | 47 ++++++++++++++++++++++-- R/plot.simfam.R | 2 - R/print.penmodel.R |only R/print.summary.penmodel.R |only R/simfam.R | 31 ++++++++++------ R/summary.penmodel.R | 22 ++++++----- R/summary.simfam.R | 74 ++++++++++++++++++++++++-------------- man/FamEvent-package.Rd | 8 +++- man/carrierprob.Rd | 6 +-- man/penci.Rd |only man/penf.Rd |only man/penmodel.Rd | 59 ++++++++++++++++-------------- man/penmodelEM.Rd | 58 ++++++++++++++---------------- man/penplot.Rd | 31 +++++++++++----- man/plot.penmodel.Rd | 34 +++++++++++++---- man/plot.simfam.Rd | 23 +++++++----- man/print.penmodel.Rd |only man/print.summary.penmodel.Rd |only man/simfam.Rd | 60 ++++++++++++++----------------- man/summary.penmodel.Rd | 60 ++++++++++++++++++++++++++----- man/summary.simfam.Rd | 41 +++++++++++++-------- 31 files changed, 554 insertions(+), 328 deletions(-)
Title: Bayesian Network Structure Learning, Parameter Learning and
Inference
Description: Bayesian network structure learning, parameter learning and
inference.
This package implements constraint-based (GS, IAMB, Inter-IAMB, Fast-IAMB,
MMPC, Hiton-PC), pairwise (ARACNE and Chow-Liu), score-based (Hill-Climbing
and Tabu Search) and hybrid (MMHC and RSMAX2) structure learning algorithms
for discrete, Gaussian and conditional Gaussian networks, along with many
score functions and conditional independence tests.
The Naive Bayes and the Tree-Augmented Naive Bayes (TAN) classifiers are
also implemented.
Some utility functions (model comparison and manipulation, random data
generation, arc orientation testing, simple and advanced plots) are
included, as well as support for parameter estimation (maximum likelihood
and Bayesian) and inference, conditional probability queries and
cross-validation. Development snapshots with the latest bugfixes are
available from <http://www.bnlearn.com>.
Author: Marco Scutari
Maintainer: Marco Scutari <marco.scutari@gmail.com>
Diff between bnlearn versions 4.1 dated 2017-02-09 and 4.1.1 dated 2017-03-26
DESCRIPTION | 8 ++--- MD5 | 6 +-- inst/CITATION | 77 +++++++++++++++++++++++++++++++++---------------- man/bnlearn-package.Rd | 9 ++++- 4 files changed, 66 insertions(+), 34 deletions(-)