Title: Actual Evapotranspiration with Energy Balance Models
Description: Tools and functions to calculate actual Evapotranspiration
using surface energy balance models.
Author: Guillermo Federico Olmedo [aut, cre], Samuel Ortega-Farias [aut],
David Fonseca-Luengo [aut], Daniel de la Fuente-Saiz [aut], Fernando Fuentes
Peñailillo [aut]
Maintainer: Guillermo Federico Olmedo <guillermo.olmedo@gmail.com>
Diff between water versions 0.5 dated 2016-08-01 and 0.6 dated 2017-03-31
DESCRIPTION | 12 +- MD5 | 125 ++++++++++++--------- NAMESPACE | 1 NEWS | 21 +++ R/water_METRIC.R | 55 ++++++--- R/water_RSfunctions.R | 120 +++++++++++++------- R/water_WeatherStation.R | 105 ++++++++++++++---- R/water_netRadiation.G.R | 83 +++++--------- R/water_sensibleHeatFlux.R | 139 ++++++++++++++++++------ README.md |only build/vignette.rds |binary data/DEM_Talca.rda |binary data/L7_Talca.rda |binary inst/doc/Landsat8.R |only inst/doc/Landsat8.Rmd |only inst/doc/Landsat8.html |only inst/doc/METRIC_advanced.R | 39 +++--- inst/doc/METRIC_advanced.Rmd | 42 +++---- inst/doc/METRIC_advanced.html | 62 +++++----- inst/doc/METRIC_simple.R | 15 +- inst/doc/METRIC_simple.Rmd | 15 +- inst/extdata/INTA.csv |only inst/extdata/LC82320832016040LGN00.xml |only inst/extdata/LC82320832016040LGN00_MTL.txt |only inst/extdata/LC82320832016040LGN00_band10.tif |only inst/extdata/LC82320832016040LGN00_band11.tif |only inst/extdata/LC82320832016040LGN00_band2.tif |only inst/extdata/LC82320832016040LGN00_band3.tif |only inst/extdata/LC82320832016040LGN00_band4.tif |only inst/extdata/LC82320832016040LGN00_band5.tif |only inst/extdata/LC82320832016040LGN00_band6.tif |only inst/extdata/LC82320832016040LGN00_band7.tif |only inst/extdata/LC82320832016040LGN00_sr_band2.tif |only inst/extdata/LC82320832016040LGN00_sr_band3.tif |only inst/extdata/LC82320832016040LGN00_sr_band4.tif |only inst/extdata/LC82320832016040LGN00_sr_band5.tif |only inst/extdata/LC82320832016040LGN00_sr_band6.tif |only inst/extdata/LC82320832016040LGN00_sr_band7.tif |only man/DEM_Talca.Rd | 1 man/ET24h.Rd | 7 - man/L7_Talca.Rd | 1 man/LAI.Rd | 13 +- man/METRIC.EB.Rd | 19 +-- man/METRIC.G.Rd | 7 - man/METRIC.Rn.Rd | 7 - man/METRICtopo.Rd | 7 - man/SWtrasmisivity.Rd | 9 - man/albedo.Rd | 16 +- man/calcAnchors.Rd | 7 - man/calcH.Rd | 13 +- man/calcSR.Rd | 15 +- man/calcTOAr.Rd | 13 -- man/checkSRTMgrids.Rd | 1 man/createAoi.Rd | 1 man/dailyET.Rd | 7 - man/getDataWS.Rd | 1 man/hourlyET.Rd | 7 - man/incLWradiation.Rd | 9 - man/incSWradiation.Rd | 7 - man/loadImage.Rd | 10 - man/loadImageSR.Rd |only man/momentumRoughnessLength.Rd | 9 - man/netRadiation.Rd | 7 - man/outLWradiation.Rd | 9 - man/plot.waterWeatherStation.Rd | 5 man/prepareSRTMdata.Rd | 1 man/print.waterWeatherStation.Rd | 1 man/read.WSdata.Rd | 11 - man/read.WSdata2.Rd | 3 man/soilHeatFlux.Rd | 7 - man/solarAngles.Rd | 7 - man/surfaceTemperature.Rd | 19 +-- man/waterOptions.Rd | 7 - vignettes/Landsat8.Rmd |only vignettes/METRIC_advanced.Rmd | 6 - 75 files changed, 645 insertions(+), 459 deletions(-)
Title: Geometric Shadow Calculations
Description: Functions for calculating (1) shadow heights; (2) shadow footprint on ground polygons; and (3) Sky View Factor values. Inputs include a polygonal layer of obstacle outlines along with their heights, sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: breaking polygons into line segments, finding segment azimuth, shifting segments by azimuth and distance, and constructing the footprint of a line of sight between an observer and the sun.
Author: Michael Dorman [aut, cre],
Evyatar Erell [ctb],
Itai Kloog [ctb],
Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between shadow versions 0.2.0 dated 2017-01-19 and 0.3.0 dated 2017-03-31
shadow-0.2.0/shadow/R/shadeFootprint.R |only shadow-0.2.0/shadow/R/shadeHeight.R |only shadow-0.2.0/shadow/R/shadeImageWall.R |only shadow-0.2.0/shadow/R/shadePropWall.R |only shadow-0.2.0/shadow/man/shadeFootprint.Rd |only shadow-0.2.0/shadow/man/shadeHeight.Rd |only shadow-0.2.0/shadow/man/shadeImageWall.Rd |only shadow-0.2.0/shadow/man/shadePropWall.Rd |only shadow-0.2.0/shadow/tests/testthat/test_shadeFootprint.R |only shadow-0.2.0/shadow/tests/testthat/test_shadePropWall.R |only shadow-0.3.0/shadow/DESCRIPTION | 10 shadow-0.3.0/shadow/MD5 | 62 +-- shadow-0.3.0/shadow/NAMESPACE | 9 shadow-0.3.0/shadow/R/SVF.R | 251 +++++++------- shadow-0.3.0/shadow/R/SVFPnt.R |only shadow-0.3.0/shadow/R/checkInputs.R |only shadow-0.3.0/shadow/R/classifyAz.R | 42 +- shadow-0.3.0/shadow/R/data.R | 48 ++ shadow-0.3.0/shadow/R/shadow.R | 1 shadow-0.3.0/shadow/R/shadowFootprint.R |only shadow-0.3.0/shadow/R/shadowHeight.R |only shadow-0.3.0/shadow/R/shadowHeightPnt.R |only shadow-0.3.0/shadow/R/sunLocation.R | 3 shadow-0.3.0/shadow/build/vignette.rds |binary shadow-0.3.0/shadow/data/block.RData |only shadow-0.3.0/shadow/data/build.RData |binary shadow-0.3.0/shadow/data/park.RData |only shadow-0.3.0/shadow/data/rishon.RData |only shadow-0.3.0/shadow/data/sidewalk.RData |only shadow-0.3.0/shadow/inst/doc/introduction.R | 103 ++--- shadow-0.3.0/shadow/inst/doc/introduction.Rmd | 186 +++++----- shadow-0.3.0/shadow/inst/doc/introduction.html | 192 +++++----- shadow-0.3.0/shadow/man/SVF.Rd | 68 ++- shadow-0.3.0/shadow/man/block.Rd |only shadow-0.3.0/shadow/man/build.Rd | 14 shadow-0.3.0/shadow/man/classifyAz.Rd | 16 shadow-0.3.0/shadow/man/park.Rd |only shadow-0.3.0/shadow/man/rishon.Rd |only shadow-0.3.0/shadow/man/shadowFootprint.Rd |only shadow-0.3.0/shadow/man/shadowHeight.Rd |only shadow-0.3.0/shadow/man/sidewalk.Rd |only shadow-0.3.0/shadow/tests/testthat/test_SVF.R | 30 + shadow-0.3.0/shadow/tests/testthat/test_shadowFootprint.R |only shadow-0.3.0/shadow/tests/testthat/test_shadowHeight.R | 46 +- shadow-0.3.0/shadow/vignettes/introduction.Rmd | 186 +++++----- 45 files changed, 713 insertions(+), 554 deletions(-)
Title: HTTP Client
Description: A simple HTTP client, with tools for making HTTP requests,
and mocking HTTP requests. The package is built on R6, and takes
inspiration from Ruby's 'faraday' gem (<https://rubygems.org/gems/faraday>).
The package name is a play on curl, the widely used command line tool
for HTTP, and this package is built on top of the R package 'curl', an
interface to 'libcurl' (<https://curl.haxx.se/libcurl>).
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between crul versions 0.3.0 dated 2017-02-17 and 0.3.4 dated 2017-03-31
crul-0.3.0/crul/inst/vign |only crul-0.3.4/crul/DESCRIPTION | 11 crul-0.3.4/crul/MD5 | 96 +-- crul-0.3.4/crul/NAMESPACE | 20 crul-0.3.4/crul/NEWS.md | 38 + crul-0.3.4/crul/R/async.R | 18 crul-0.3.4/crul/R/asyncvaried.R | 65 +- crul-0.3.4/crul/R/client.R | 100 --- crul-0.3.4/crul/R/crul-package.r | 21 crul-0.3.4/crul/R/curl-options.R | 4 crul-0.3.4/crul/R/delete-requests.R |only crul-0.3.4/crul/R/handle.R | 2 crul-0.3.4/crul/R/httprequest.R | 127 +--- crul-0.3.4/crul/R/make_url.R | 44 + crul-0.3.4/crul/R/post-requests.R | 40 + crul-0.3.4/crul/R/proxies.R | 7 crul-0.3.4/crul/R/query.R | 4 crul-0.3.4/crul/R/response.R | 24 crul-0.3.4/crul/R/zzz.R | 27 crul-0.3.4/crul/README.md | 58 + crul-0.3.4/crul/build/vignette.rds |binary crul-0.3.4/crul/inst/doc/async.R |only crul-0.3.4/crul/inst/doc/async.Rmd | 203 +----- crul-0.3.4/crul/inst/doc/async.html | 512 ++++++++-------- crul-0.3.4/crul/inst/doc/crul_vignette.R |only crul-0.3.4/crul/inst/doc/crul_vignette.Rmd | 201 +----- crul-0.3.4/crul/inst/doc/crul_vignette.html | 567 ++++++++---------- crul-0.3.4/crul/inst/doc/how-to-use-crul.R |only crul-0.3.4/crul/inst/doc/how-to-use-crul.Rmd |only crul-0.3.4/crul/inst/doc/how-to-use-crul.html |only crul-0.3.4/crul/man/Async.Rd | 44 - crul-0.3.4/crul/man/AsyncVaried.Rd | 86 +- crul-0.3.4/crul/man/HttpClient.Rd | 68 +- crul-0.3.4/crul/man/HttpRequest.Rd | 70 +- crul-0.3.4/crul/man/HttpResponse.Rd | 54 + crul-0.3.4/crul/man/crul-package.Rd | 16 crul-0.3.4/crul/man/curl-options.Rd | 2 crul-0.3.4/crul/man/delete-requests.Rd |only crul-0.3.4/crul/man/handle.Rd | 2 crul-0.3.4/crul/man/post-requests.Rd | 40 + crul-0.3.4/crul/man/proxies.Rd | 2 crul-0.3.4/crul/man/url_build.Rd |only crul-0.3.4/crul/tests/testthat/test-async.R | 97 +++ crul-0.3.4/crul/tests/testthat/test-client.R | 47 + crul-0.3.4/crul/tests/testthat/test-handle.R |only crul-0.3.4/crul/tests/testthat/test-headers.R | 3 crul-0.3.4/crul/tests/testthat/test-proxies.R |only crul-0.3.4/crul/tests/testthat/test-query.R | 3 crul-0.3.4/crul/tests/testthat/test-request.R | 56 + crul-0.3.4/crul/tests/testthat/test-response.R |only crul-0.3.4/crul/tests/testthat/test-url_build_parse.R |only crul-0.3.4/crul/tests/testthat/test-utils.R |only crul-0.3.4/crul/vignettes/async.Rmd | 203 +----- crul-0.3.4/crul/vignettes/crul_vignette.Rmd | 201 +----- crul-0.3.4/crul/vignettes/how-to-use-crul.Rmd |only 55 files changed, 1589 insertions(+), 1594 deletions(-)
Title: Constrained B-Splines (Sparse Matrix Based)
Description: Qualitatively Constrained (Regression) Smoothing Splines via
Linear Programming and Sparse Matrices.
Author: Pin T. Ng <Pin.Ng@nau.edu> and Martin Maechler
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cobs versions 1.3-2 dated 2017-01-31 and 1.3-3 dated 2017-03-31
ChangeLog | 23 ++++ DESCRIPTION | 12 +- MD5 | 39 ++++--- NAMESPACE | 15 +- R/concaveRegr.R | 273 ++++++++++++++++++++++++++++++++----------------- R/scobs.R | 69 +++++------- R/splines.R | 6 - TODO | 4 inst/util.R | 10 + man/cobs-internal.Rd | 2 man/cobs.Rd | 6 - man/conreg-methods.Rd | 14 ++ man/conreg.Rd | 81 +++++++++----- man/interpSplineCon.Rd |only man/predict.cobs.Rd | 6 - src/SR.c |only src/SR.h |only src/init.c |only src/nrutil.c |only src/nrutil.h |only src/splines.c | 13 -- src/splines.h |only tests/ex2-long.R | 29 +++-- tests/wind.R | 48 ++++++-- 24 files changed, 420 insertions(+), 230 deletions(-)
Title: Estimation of Smooth Hazard Models for Interval-Censored Data
with Applications to Survival and Illness-Death Models
Description: Estimation of two-state (survival) models and irreversible illness-
death models with possibly interval-censored,left-truncated and right-censored
data. Proportional intensities regression models can be specified to allow for
covariates effects separately for each transition. We use either a parametric
approach with Weibull baseline intensities or a semi-parametric approach with
M-splines approximation of baseline intensities in order to obtain smooth
estimates of the hazard functions. Parameter estimates are obtained by maximum
likelihood in the parametric approach and by penalized maximum likelihood in the
semi-parametric approach.
Author: Celia Touraine, Pierre Joly, Thomas A. Gerds
Maintainer: Thomas Alexander Gerds <tag@biostat.ku.dk>
Diff between SmoothHazard versions 1.2.0 dated 2014-09-18 and 1.4.0 dated 2017-03-31
SmoothHazard-1.2.0/SmoothHazard/R/lifexpect.R |only SmoothHazard-1.2.0/SmoothHazard/man/lifexpect.Rd |only SmoothHazard-1.4.0/SmoothHazard/DESCRIPTION | 31 SmoothHazard-1.4.0/SmoothHazard/MD5 | 82 - SmoothHazard-1.4.0/SmoothHazard/NAMESPACE | 28 SmoothHazard-1.4.0/SmoothHazard/R/SmoothHazard-package.R | 7 SmoothHazard-1.4.0/SmoothHazard/R/idm.R | 922 +++++++-------- SmoothHazard-1.4.0/SmoothHazard/R/intensity.R |only SmoothHazard-1.4.0/SmoothHazard/R/plot.idm.R | 281 ---- SmoothHazard-1.4.0/SmoothHazard/R/plot.shr.R | 2 SmoothHazard-1.4.0/SmoothHazard/R/predict.idm.R | 818 ++++++------- SmoothHazard-1.4.0/SmoothHazard/R/print.idm.R | 8 SmoothHazard-1.4.0/SmoothHazard/R/print.predict.idm.R |only SmoothHazard-1.4.0/SmoothHazard/R/print.shr.R | 11 SmoothHazard-1.4.0/SmoothHazard/R/shr.R | 427 +++--- SmoothHazard-1.4.0/SmoothHazard/R/simSurvIC.R |only SmoothHazard-1.4.0/SmoothHazard/R/simulateIDM.R | 6 SmoothHazard-1.4.0/SmoothHazard/R/summary.idm.R | 11 SmoothHazard-1.4.0/SmoothHazard/R/summary.shr.R | 21 SmoothHazard-1.4.0/SmoothHazard/README.md |only SmoothHazard-1.4.0/SmoothHazard/man/Paq1000.Rd | 8 SmoothHazard-1.4.0/SmoothHazard/man/idm.Rd | 380 +++--- SmoothHazard-1.4.0/SmoothHazard/man/idmModel.Rd | 46 SmoothHazard-1.4.0/SmoothHazard/man/intensity.Rd |only SmoothHazard-1.4.0/SmoothHazard/man/plot.idm.Rd | 46 SmoothHazard-1.4.0/SmoothHazard/man/plot.shr.Rd | 55 SmoothHazard-1.4.0/SmoothHazard/man/predict.idm.Rd | 97 - SmoothHazard-1.4.0/SmoothHazard/man/print.idm.Rd | 22 SmoothHazard-1.4.0/SmoothHazard/man/print.shr.Rd | 33 SmoothHazard-1.4.0/SmoothHazard/man/shr.Rd | 205 +-- SmoothHazard-1.4.0/SmoothHazard/man/sim.idmModel.Rd | 26 SmoothHazard-1.4.0/SmoothHazard/man/sim.survIC.Rd |only SmoothHazard-1.4.0/SmoothHazard/man/simulateIDM.Rd | 17 SmoothHazard-1.4.0/SmoothHazard/man/summary.idm.Rd | 30 SmoothHazard-1.4.0/SmoothHazard/man/summary.shr.Rd | 32 SmoothHazard-1.4.0/SmoothHazard/man/survIC.Rd |only SmoothHazard-1.4.0/SmoothHazard/man/testdata.Rd | 8 SmoothHazard-1.4.0/SmoothHazard/src/Makevars | 11 SmoothHazard-1.4.0/SmoothHazard/src/Makevars.win | 71 - SmoothHazard-1.4.0/SmoothHazard/src/cdfnor.f90 |only SmoothHazard-1.4.0/SmoothHazard/src/commun.f90 | 2 SmoothHazard-1.4.0/SmoothHazard/src/distance.f90 | 23 SmoothHazard-1.4.0/SmoothHazard/src/idmPl.f90 | 19 SmoothHazard-1.4.0/SmoothHazard/src/idmWeib.f90 | 25 SmoothHazard-1.4.0/SmoothHazard/src/init.c |only SmoothHazard-1.4.0/SmoothHazard/src/survPl.f90 | 23 SmoothHazard-1.4.0/SmoothHazard/src/survWeib.f90 | 35 SmoothHazard-1.4.0/SmoothHazard/tests |only 48 files changed, 1843 insertions(+), 2026 deletions(-)
Title: A Fast Implementation of Random Forests
Description: A fast implementation of Random Forests, particularly suited for high
dimensional data. Ensembles of classification, regression, survival and
probability prediction trees are supported. Data from genome-wide association
studies can be analyzed efficiently. In addition to data frames, datasets of
class 'gwaa.data' (R package 'GenABEL') can be directly analyzed.
Author: Marvin N. Wright
Maintainer: Marvin N. Wright <wright@imbs.uni-luebeck.de>
Diff between ranger versions 0.6.0 dated 2016-10-07 and 0.7.0 dated 2017-03-31
DESCRIPTION | 18 - MD5 | 98 +++++----- NEWS | 9 R/RcppExports.R | 4 R/csrf.R | 2 R/formula.R |only R/holdoutRF.R | 39 +++- R/importance.R | 14 + R/predict.R | 65 +++++-- R/print.R | 4 R/ranger.R | 98 +++++++--- inst/CITATION |only man/csrf.Rd | 2 man/holdoutRF.Rd | 10 - man/importance_pvalues.Rd | 2 man/parse.formula.Rd |only man/predict.ranger.Rd | 6 man/predict.ranger.forest.Rd | 4 man/ranger.Rd | 33 +-- src/AAA_check_cpp11.cpp | 2 src/Data.cpp | 15 + src/Data.h | 2 src/Forest.cpp | 22 +- src/Forest.h | 11 - src/ForestClassification.cpp | 55 +++--- src/ForestProbability.cpp | 92 +++++----- src/ForestRegression.cpp | 57 +++--- src/ForestSurvival.cpp | 76 +++++--- src/RcppExports.cpp | 7 src/Tree.cpp | 7 src/Tree.h | 3 src/TreeClassification.cpp | 281 +++++++++++++++++++++++++++++-- src/TreeClassification.h | 6 src/TreeProbability.cpp | 277 +++++++++++++++++++++++++++++- src/TreeProbability.h | 6 src/TreeRegression.cpp | 242 +++++++++++++++++++++++++- src/TreeRegression.h | 7 src/TreeSurvival.cpp | 268 ++++++++++++++++++++++++++++- src/TreeSurvival.h | 9 src/globals.h | 4 src/rangerCpp.cpp | 20 +- src/ranger_init.c |only src/utility.cpp | 39 +++- src/utility.h | 46 ++++- src/version.h | 2 tests/testthat/test_classification.R | 9 tests/testthat/test_extratrees.R |only tests/testthat/test_importance_pvalues.R | 42 ++++ tests/testthat/test_interface.R |only tests/testthat/test_probability.R | 29 +++ tests/testthat/test_ranger.R | 98 ++++++++++ tests/testthat/test_regression.R | 9 tests/testthat/test_survival.R | 51 ++++- 53 files changed, 1836 insertions(+), 366 deletions(-)
Title: Principal Component Gene Set Enrichment
Description: Contains logic for computing the statistical association of variable groups, i.e., gene sets, with respect to the principal components of genomic data.
Author: H. Robert Frost
Maintainer: H. Robert Frost <rob.frost@dartmouth.edu>
Diff between PCGSE versions 0.3 dated 2016-09-27 and 0.4 dated 2017-03-31
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/PCGSE.R | 8 ++++---- R/SGSE.R | 12 ++++++------ man/pcgse.Rd | 2 +- man/sgse.Rd | 2 +- 6 files changed, 21 insertions(+), 21 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modelling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.3.0.1 dated 2017-03-12 and 0.3.1 dated 2017-03-31
DESCRIPTION | 8 MD5 | 76 ++-- R/ANOVA.R | 10 R/ARMA.R | 195 ++++++------ R/Binary_ANOVA.R | 10 R/Causation.R | 2 R/Dependence.R | 12 R/LPM_UPM_VaR.R | 19 - R/Multivariate_Regression.R | 40 +- R/Normalization.R | 14 R/Numerical_Differentiation.R | 6 R/Partition_Map.R | 72 +++- R/Regression.R | 146 +++++---- R/Seasonality_Test.R | 26 - R/Stack.R | 8 R/dy_d_wrt.R | 7 R/dy_dx.R | 4 R/gvload.R | 2 build/vignette.rds |binary inst/doc/NNSvignette_Clustering_and_Regression.R | 2 inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 2 inst/doc/NNSvignette_Clustering_and_Regression.html | 300 ++++++++++--------- inst/doc/NNSvignette_Correlation_and_Dependence.html | 6 inst/doc/NNSvignette_Forecasting.R |only inst/doc/NNSvignette_Forecasting.Rmd |only inst/doc/NNSvignette_Forecasting.html |only man/LPM.VaR.Rd | 13 man/NNS.ANOVA.Rd | 11 man/NNS.ARMA.Rd | 28 - man/NNS.caus.Rd | 2 man/NNS.dep.Rd | 2 man/NNS.diff.Rd | 6 man/NNS.norm.Rd | 6 man/NNS.part.Rd | 4 man/NNS.reg.Rd | 47 ++ man/NNS.seas.Rd | 2 man/NNS.stack.Rd | 6 man/UPM.VaR.Rd | 10 man/dy.d_.Rd | 6 man/dy.dx.Rd | 4 vignettes/NNSvignette_Forecasting.Rmd |only 41 files changed, 628 insertions(+), 486 deletions(-)
Title: Interactive Networks with R
Description: Create interactive networked coincidences. It joins the data analysis power of R to study coincidences and the visualization libraries of JavaScript in one package.
Author: Modesto Escobar <modesto@usal.es>,
Carlos Prieto <cprietos@usal.es>,
David Barrios <metal@usal.es>,
Luis Martinez-Uribe <lmartinez@usal.es>.
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between netCoin versions 0.2.4 dated 2017-03-28 and 0.2.5 dated 2017-03-31
DESCRIPTION | 9 ++++--- MD5 | 57 ++++++++++++++++++++++++++++++++++++++++++++++---- inst/doc/netCoin.Rmd | 2 - inst/doc/netCoin.html | 6 ++--- vignettes/dice |only vignettes/italian |only vignettes/netCoin.Rmd | 2 - vignettes/sanderson |only 8 files changed, 63 insertions(+), 13 deletions(-)
Title: Diagnostic and Prognostic Meta-Analysis
Description: Meta-analysis of diagnostic and prognostic modeling studies. Summarize estimates of diagnostic test accuracy and prediction model performance. Validate, update and combine published prediction models.
Author: Thomas Debray
Maintainer: Thomas Debray <thomas.debray@gmail.com>
Diff between metamisc versions 0.1.3 dated 2017-03-12 and 0.1.4 dated 2017-03-31
DESCRIPTION | 16 - MD5 | 23 +- NAMESPACE | 10 - R/basics.r | 306 ++++++++++++++++++++++++++++++++++ R/bugsmodels.r |only R/uvmeta.r | 40 ---- R/valmeta.r | 420 ++++++++++++++++++++++-------------------------- data/EuroSCORE.rda |binary data/Framingham.rda |only man/EuroSCORE.Rd | 32 +-- man/Framingham.Rd |only man/metamisc-package.Rd | 4 man/uvmeta.Rd | 2 man/valmeta.Rd | 84 ++++++--- 14 files changed, 613 insertions(+), 324 deletions(-)
Title: An R Interface to the 'ROPTLIB' Library for Riemannian Manifold
Optimization
Description: An R interface to the 'ROPTLIB' optimization library (see <http://www.math.fsu.edu/~whuang2> for more information). Optimize real-valued functions over manifolds such as Stiefel, Grassmann, and Symmetric Positive Definite matrices.
Author: Kofi P. Adragni [aut, cre, cph],
Sean R. Martin [aut, cph],
Andrew M. Raim [aut, cph],
Wen Huang [aut, cph]
Maintainer: Kofi P. Adragni <kofi@umbc.edu>
Diff between ManifoldOptim versions 0.1.2 dated 2017-02-06 and 0.1.3 dated 2017-03-31
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/Others/MyMatrix.cpp | 2 +- src/Others/def.h | 48 ++++++++++++++++++++++++++++++++++++++++++++---- 4 files changed, 52 insertions(+), 12 deletions(-)
Title: Generalized Autoregressive Score Models
Description: Simulate, estimate and forecast using univariate and multivariate GAS models.
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>
Diff between GAS versions 0.1.8 dated 2017-03-29 and 0.1.9 dated 2017-03-31
GAS-0.1.8/GAS/inst/doc/GAS_vignette_0.1.8.Rnw |only GAS-0.1.8/GAS/inst/doc/GAS_vignette_0.1.8.pdf |only GAS-0.1.8/GAS/tests/testthat/test_Score.R |only GAS-0.1.8/GAS/vignettes/GAS_vignette_0.1.8.Rnw |only GAS-0.1.9/GAS/ChangeLog | 13 ++++++++----- GAS-0.1.9/GAS/DESCRIPTION | 6 +++--- GAS-0.1.9/GAS/MD5 | 22 +++++++++++----------- GAS-0.1.9/GAS/build/partial.rdb |binary GAS-0.1.9/GAS/build/vignette.rds |binary GAS-0.1.9/GAS/inst/CITATION | 2 +- GAS-0.1.9/GAS/inst/ExtensionTests/run_Score.R |only GAS-0.1.9/GAS/inst/doc/AddNewDistribution.pdf |binary GAS-0.1.9/GAS/inst/doc/GAS_vignette_0.1.9.Rnw |only GAS-0.1.9/GAS/inst/doc/GAS_vignette_0.1.9.pdf |only GAS-0.1.9/GAS/man/GAS-package.Rd | 4 ++-- GAS-0.1.9/GAS/vignettes/GAS_vignette_0.1.9.Rnw |only 16 files changed, 25 insertions(+), 22 deletions(-)
Title: Evolutionary Learning of Globally Optimal Trees
Description: Commonly used classification and regression tree methods like the CART algorithm
are recursive partitioning methods that build the model in a forward stepwise search.
Although this approach is known to be an efficient heuristic, the results of recursive
tree methods are only locally optimal, as splits are chosen to maximize homogeneity at
the next step only. An alternative way to search over the parameter space of trees is
to use global optimization methods like evolutionary algorithms. The 'evtree' package
implements an evolutionary algorithm for learning globally optimal classification and
regression trees in R. CPU and memory-intensive tasks are fully computed in C++ while
the 'partykit' package is leveraged to represent the resulting trees in R, providing
unified infrastructure for summaries, visualizations, and predictions.
Author: Thomas Grubinger [aut, cre],
Achim Zeileis [aut],
Karl-Peter Pfeiffer [aut]
Maintainer: Thomas Grubinger <Thomas.Grubinger@scch.at>
Diff between evtree versions 1.0-2 dated 2017-01-24 and 1.0-3 dated 2017-03-31
DESCRIPTION | 12 ++++----- MD5 | 24 +++++++++---------- NEWS | 8 ++++++ build/vignette.rds |binary data/BBBClub.rda |binary data/ContraceptiveChoice.RData |binary data/GermanCredit.RData |binary data/MAGICGammaTelescope.RData |binary data/StatlogHeart.RData |binary inst/doc/evtree.pdf |binary src/container.cpp | 50 +++++++++++++++++++++++++---------------- src/container.h | 7 ++--- src/tree.cpp | 8 +++--- 13 files changed, 64 insertions(+), 45 deletions(-)
Title: Data Frames in R for Make
Description: Reproducible build system for any project. Understands
the dependency structure of your project, builds out-of-date
targets, skips up-to-date targets, and offers two forms of
parallel computing.
Author: William Michael Landau [aut, cre],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@lilly.com>
Diff between drake versions 2.0.0 dated 2017-03-06 and 2.1.0 dated 2017-03-31
drake-2.0.0/drake/man/load_if_missing.Rd |only drake-2.1.0/drake/DESCRIPTION | 12 drake-2.1.0/drake/MD5 | 124 - drake-2.1.0/drake/NAMESPACE | 8 drake-2.1.0/drake/R/Makefile.R | 11 drake-2.1.0/drake/R/build.R | 2 drake-2.1.0/drake/R/config.R | 43 drake-2.1.0/drake/R/debug.R | 4 drake-2.1.0/drake/R/dependencies.R | 2 drake-2.1.0/drake/R/graph.R | 18 drake-2.1.0/drake/R/hash.R | 4 drake-2.1.0/drake/R/lapply.R |only drake-2.1.0/drake/R/make.R | 15 drake-2.1.0/drake/R/mclapply.R | 27 drake-2.1.0/drake/R/namespace.R | 3 drake-2.1.0/drake/R/parLapply.R |only drake-2.1.0/drake/R/parallel.R |only drake-2.1.0/drake/R/test.R | 7 drake-2.1.0/drake/build/vignette.rds |binary drake-2.1.0/drake/inst/doc/caution.R |only drake-2.1.0/drake/inst/doc/caution.Rmd |only drake-2.1.0/drake/inst/doc/caution.html |only drake-2.1.0/drake/inst/doc/drake.Rmd | 29 drake-2.1.0/drake/inst/doc/drake.html | 310 +++- drake-2.1.0/drake/inst/doc/quickstart.R | 18 drake-2.1.0/drake/inst/doc/quickstart.Rmd | 39 drake-2.1.0/drake/inst/doc/quickstart.html | 1025 +++++++++----- drake-2.1.0/drake/inst/examples/basic/basic.R | 41 drake-2.1.0/drake/inst/logo.png |binary drake-2.1.0/drake/man/analyses.Rd | 1 drake-2.1.0/drake/man/as_file.Rd | 1 drake-2.1.0/drake/man/build_graph.Rd | 3 drake-2.1.0/drake/man/built.Rd | 1 drake-2.1.0/drake/man/cached.Rd | 1 drake-2.1.0/drake/man/check.Rd | 1 drake-2.1.0/drake/man/clean.Rd | 1 drake-2.1.0/drake/man/default_parallelism.Rd |only drake-2.1.0/drake/man/default_system2_args.Rd | 1 drake-2.1.0/drake/man/evaluate.Rd | 1 drake-2.1.0/drake/man/example_drake.Rd | 1 drake-2.1.0/drake/man/examples_drake.Rd | 1 drake-2.1.0/drake/man/expand.Rd | 1 drake-2.1.0/drake/man/find_cache.Rd | 1 drake-2.1.0/drake/man/find_project.Rd | 1 drake-2.1.0/drake/man/gather.Rd | 1 drake-2.1.0/drake/man/imported.Rd | 1 drake-2.1.0/drake/man/loadd.Rd | 1 drake-2.1.0/drake/man/make.Rd | 11 drake-2.1.0/drake/man/mk.Rd | 1 drake-2.1.0/drake/man/parallelism_choices.Rd | 16 drake-2.1.0/drake/man/plan.Rd | 1 drake-2.1.0/drake/man/plot_graph.Rd | 1 drake-2.1.0/drake/man/prune.Rd | 1 drake-2.1.0/drake/man/read_config.Rd | 1 drake-2.1.0/drake/man/read_graph.Rd | 1 drake-2.1.0/drake/man/read_plan.Rd | 1 drake-2.1.0/drake/man/readd.Rd | 1 drake-2.1.0/drake/man/session.Rd | 1 drake-2.1.0/drake/man/status.Rd | 1 drake-2.1.0/drake/man/summaries.Rd | 1 drake-2.1.0/drake/man/tracked.Rd |only drake-2.1.0/drake/tests/testthat/test-Makefile.R | 3 drake-2.1.0/drake/tests/testthat/test-edge-cases.R | 6 drake-2.1.0/drake/tests/testthat/test-intermediate-file.R | 2 drake-2.1.0/drake/tests/testthat/test-other-features.R | 28 drake-2.1.0/drake/vignettes/caution.Rmd |only drake-2.1.0/drake/vignettes/drake.Rmd | 29 drake-2.1.0/drake/vignettes/quickstart.Rmd | 39 68 files changed, 1251 insertions(+), 655 deletions(-)
Title: An Installation Framework for Shiny Apps
Description: Installs shiny apps using Inno Setup, an open source software that builds installers for Windows programs <http://www.jrsoftware.org/ishelp/>.
Author: Jon Hill [aut, cre, cph],
W. Lee Pang [aut, cph] (DesktopDeployR project at
https://github.com/wleepang/DesktopDeployR)
Maintainer: Jon Hill <jon.mark.hill@gmail.com>
Diff between RInno versions 0.0.2 dated 2017-03-26 and 0.0.3 dated 2017-03-31
DESCRIPTION | 11 +++++++---- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 6 ++++++ R/compile_iss.R | 2 +- R/create_app.R | 2 +- R/create_config.R | 6 ++++-- R/files.R | 4 ++-- R/install_inno.R | 16 +--------------- R/setup.R | 11 ++++++++++- README.md | 4 ++-- inst/doc/Introduction.Rmd | 2 +- inst/doc/Introduction.html | 10 +++++----- inst/doc/cont-installation.html | 6 +++--- inst/installation/app.R | 10 ++++++---- man/create_app.Rd | 2 +- man/create_config.Rd | 5 ++++- man/install_inno.Rd | 4 +--- man/setup.Rd | 2 +- vignettes/Introduction.Rmd | 2 +- 19 files changed, 75 insertions(+), 66 deletions(-)
Title: Regional Economic Analysis Toolbox
Description: Collection of models and analysis methods used in regional and urban economics and (quantitative) economic geography, e.g. measures of inequality, regional disparities and convergence, regional specialization as well as accessibility and spatial interaction models.
Author: Thomas Wieland
Maintainer: Thomas Wieland <thomas.wieland.geo@googlemail.com>
Diff between REAT versions 1.3.0 dated 2017-02-10 and 1.3.1 dated 2017-03-31
DESCRIPTION | 8 +-- MD5 | 40 ++++++++++-------- NAMESPACE | 5 -- R/cv.R | 94 +++++++++++++++++++++++++------------------- R/gini.R | 108 ++++++++++++++++++++++++++++++++------------------- R/krugman.specg.R |only R/lorenz.R |only R/rca.R | 4 - R/sd2.R |only data/Freiburg.rda |binary data/Freiburg1.rda |binary data/Freiburg2.rda |binary data/Goettingen.rda |binary data/gdppc.rda |binary data/health1.rda |binary data/health2.rda |binary data/health3.rda |binary data/health4.rda |binary data/health5.rda |binary man/cv.Rd | 38 ++++------------- man/gini.Rd | 83 ++++++++++++++++++++++++++++++++------- man/krugman.specg.Rd |only man/lorenz.Rd |only man/sd2.Rd |only 24 files changed, 231 insertions(+), 149 deletions(-)
Title: Graphical Interaction Models
Description: Provides the following types of models: Models for for contingency
tables (i.e. log-linear models) Graphical Gaussian models for multivariate
normal data (i.e. covariance selection models) Mixed interaction models.
Author: Søren Højsgaard <sorenh@math.aau.dk>
Maintainer: Søren Højsgaard <sorenh@math.aau.dk>
Diff between gRim versions 0.1-17 dated 2013-08-08 and 0.2-0 dated 2017-03-31
gRim-0.1-17/gRim/R/MI-utilities.R |only gRim-0.1-17/gRim/R/ciTest_dataframe.R |only gRim-0.1-17/gRim/R/ciTest_list.R |only gRim-0.1-17/gRim/R/ciTest_table.R |only gRim-0.1-17/gRim/R/dmod-dimension.R |only gRim-0.1-17/gRim/R/infoPrint.R |only gRim-0.1-17/gRim/R/modify_glist.R |only gRim-0.1-17/gRim/R/zzz.R |only gRim-0.1-17/gRim/Wishlist.txt |only gRim-0.1-17/gRim/gRim-Ex.R |only gRim-0.1-17/gRim/man/ciTest_generic2.Rd |only gRim-0.1-17/gRim/man/ciTest_table.Rd |only gRim-0.1-17/gRim/man/iModel-stepwise.Rd |only gRim-0.2-0/gRim/ChangeLog | 256 +++--- gRim-0.2-0/gRim/DESCRIPTION | 30 gRim-0.2-0/gRim/MD5 | 139 +-- gRim-0.2-0/gRim/NAMESPACE | 77 +- gRim-0.2-0/gRim/R/CGstats.R | 384 +++++----- gRim-0.2-0/gRim/R/GC-compare.R | 48 - gRim-0.2-0/gRim/R/MI-comparemodels.R | 88 +- gRim-0.2-0/gRim/R/MI-dimension.R | 384 +++++----- gRim-0.2-0/gRim/R/MI-fit.R | 1086 +++++++++++++++-------------- gRim-0.2-0/gRim/R/MI-fit2.R |only gRim-0.2-0/gRim/R/MI-fit3.R |only gRim-0.2-0/gRim/R/MI-parminfo.R | 34 gRim-0.2-0/gRim/R/MI-weakdata.R | 252 +++--- gRim-0.2-0/gRim/R/MI-weakmodel.R | 246 +++--- gRim-0.2-0/gRim/R/MI-xxx2yyyParms.R | 554 ++++++++------ gRim-0.2-0/gRim/R/RcppExports.R |only gRim-0.2-0/gRim/R/accessor.R |only gRim-0.2-0/gRim/R/ciTest-array.R |only gRim-0.2-0/gRim/R/ciTest.R | 398 +++++++++- gRim-0.2-0/gRim/R/ciTest_ordinal.R | 1086 +++++++++++++++-------------- gRim-0.2-0/gRim/R/effloglin.R | 266 ++++--- gRim-0.2-0/gRim/R/gRim-package.R |only gRim-0.2-0/gRim/R/getEdges.R | 273 ++++--- gRim-0.2-0/gRim/R/ggmfit.R | 320 ++++---- gRim-0.2-0/gRim/R/iModel-backwardforward.R | 672 ++++++++++------- gRim-0.2-0/gRim/R/iModel-cmod.R | 303 ++++---- gRim-0.2-0/gRim/R/iModel-coerce.R | 100 +- gRim-0.2-0/gRim/R/iModel-compareModel.R | 30 gRim-0.2-0/gRim/R/iModel-dmod-dimension.R |only gRim-0.2-0/gRim/R/iModel-dmod.R | 615 ++++++++-------- gRim-0.2-0/gRim/R/iModel-general.R | 158 ++-- gRim-0.2-0/gRim/R/iModel-labelEdges.R | 413 +++++------ gRim-0.2-0/gRim/R/iModel-mmod.R | 530 +++++++------- gRim-0.2-0/gRim/R/iModel-plot.R | 106 +- gRim-0.2-0/gRim/R/iModel-print.R | 370 ++++----- gRim-0.2-0/gRim/R/iModel-testadd.R | 253 ++++-- gRim-0.2-0/gRim/R/iModel-testdelete.R | 261 ++++-- gRim-0.2-0/gRim/R/iModel-update.R | 559 ++++++++++++-- gRim-0.2-0/gRim/R/pFormula2.R | 454 ++++++------ gRim-0.2-0/gRim/R/utilities.R | 273 +++++-- gRim-0.2-0/gRim/README.md |only gRim-0.2-0/gRim/TODO |only gRim-0.2-0/gRim/build |only gRim-0.2-0/gRim/inst/doc/gRim.R | 602 ++++++++-------- gRim-0.2-0/gRim/inst/doc/gRim.Rnw | 55 - gRim-0.2-0/gRim/inst/doc/gRim.pdf |binary gRim-0.2-0/gRim/man/CGstats.Rd | 138 +-- gRim-0.2-0/gRim/man/ciTest-array.Rd |only gRim-0.2-0/gRim/man/ciTest-general.Rd |only gRim-0.2-0/gRim/man/ciTest_df.Rd | 147 +-- gRim-0.2-0/gRim/man/ciTest_mvn.Rd | 146 +-- gRim-0.2-0/gRim/man/ciTest_ordinal.Rd | 160 ++-- gRim-0.2-0/gRim/man/cmod.Rd | 133 +-- gRim-0.2-0/gRim/man/dModel-class.Rd | 70 - gRim-0.2-0/gRim/man/dmod.Rd | 171 ++-- gRim-0.2-0/gRim/man/effloglin.Rd | 116 +-- gRim-0.2-0/gRim/man/gRim-internal.Rd | 126 +-- gRim-0.2-0/gRim/man/getEdges.Rd | 275 +++---- gRim-0.2-0/gRim/man/ggmfit.Rd | 124 +-- gRim-0.2-0/gRim/man/ghk2phkParms.Rd | 87 -- gRim-0.2-0/gRim/man/iModel-general.Rd |only gRim-0.2-0/gRim/man/loglinDim.Rd | 156 ++-- gRim-0.2-0/gRim/man/mmod.Rd | 120 +-- gRim-0.2-0/gRim/man/modify_glist.Rd | 152 +--- gRim-0.2-0/gRim/man/stepwise.Rd |only gRim-0.2-0/gRim/man/testEdges.Rd | 128 +-- gRim-0.2-0/gRim/man/testadd.Rd | 168 ++-- gRim-0.2-0/gRim/man/testdelete.Rd | 171 ++-- gRim-0.2-0/gRim/src/RcppExports.cpp |only gRim-0.2-0/gRim/src/init.c |only gRim-0.2-0/gRim/src/xxx2yyyParms.cpp | 578 +++++++++++++++ gRim-0.2-0/gRim/vignettes/gRim.Rnw | 55 - 85 files changed, 8486 insertions(+), 6410 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate generation, and method-of-moments parameter-estimation functions for the Delaporte distribution. The Delaporte is a discrete probability distribution which can be considered the convolution of a negative binomial distribution with a Poisson distribution. Alternatively, it can be considered a counting distribution with both Poisson and negative binomial components. It has been studied in actuarial science as a frequency distribution which has more variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 5.0.1 dated 2017-03-06 and 6.0.0 dated 2017-03-31
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NAMESPACE | 2 +- R/Delaporte.R | 37 ++++++++++++++++++------------------- README.md | 3 +++ build/partial.rdb |binary inst/NEWS.Rd | 31 +++++++++++++++++++++++++++---- man/Delaporte-defunct.Rd | 2 +- man/Delaporte-package.Rd | 4 ++-- man/Delaporte.Rd | 9 ++++----- src/delaporte.f95 | 22 +++++++++++----------- src/utils_and_wrappers.c | 6 +++--- tests/testthat/test-delap.r | 41 +++++++++++++++++++++++++---------------- 13 files changed, 111 insertions(+), 78 deletions(-)
Title: Corpora Co-Occurrence Comparison
Description: A set of functions used to compare co-occurrence between two corpora.
Author: Anthony Hennessey [aut, cre],
Viola Wiegand [aut],
Michaela Mahlberg [aut],
Christopher R. Tench [aut],
Jamie Lentin [aut]
Maintainer: Anthony Hennessey <anthony.hennessey@nottingham.ac.uk>
Diff between CorporaCoCo versions 1.0-1 dated 2017-03-27 and 1.0-2 dated 2017-03-31
CorporaCoCo-1.0-1/CorporaCoCo/build |only CorporaCoCo-1.0-1/CorporaCoCo/inst/doc/faq.R |only CorporaCoCo-1.0-1/CorporaCoCo/inst/doc/faq.Rnw |only CorporaCoCo-1.0-1/CorporaCoCo/inst/doc/proof_of_concept.R |only CorporaCoCo-1.0-1/CorporaCoCo/inst/doc/proof_of_concept.Rnw |only CorporaCoCo-1.0-1/CorporaCoCo/vignettes |only CorporaCoCo-1.0-2/CorporaCoCo/ChangeLog | 9 +++ CorporaCoCo-1.0-2/CorporaCoCo/DESCRIPTION | 12 ++-- CorporaCoCo-1.0-2/CorporaCoCo/MD5 | 35 +++--------- CorporaCoCo-1.0-2/CorporaCoCo/R/surface.R | 2 CorporaCoCo-1.0-2/CorporaCoCo/README.md | 6 +- CorporaCoCo-1.0-2/CorporaCoCo/inst/doc/faq.pdf |binary CorporaCoCo-1.0-2/CorporaCoCo/inst/doc/proof_of_concept.pdf |binary CorporaCoCo-1.0-2/CorporaCoCo/man/CorporaCoCo-package.Rd | 4 - CorporaCoCo-1.0-2/CorporaCoCo/man/coco-class.Rd | 4 - CorporaCoCo-1.0-2/CorporaCoCo/man/coco.Rd | 2 CorporaCoCo-1.0-2/CorporaCoCo/man/surface_coco.Rd | 2 17 files changed, 36 insertions(+), 40 deletions(-)
Title: Get XKCD Comic from R
Description: Visualize your favorite XKCD comic strip directly from
R. XKCD <https://xkcd.com> web comic content is provided under the Creative
Commons Attribution-NonCommercial 2.5 License.
Author: Paolo Sonego [aut, cph, cre], Mikko Korpela [aut]
Maintainer: Paolo Sonego <paolo.sonego@gmail.com>
Diff between RXKCD versions 1.7-7 dated 2016-12-02 and 1.8-2 dated 2017-03-31
DESCRIPTION | 17 ++++---- MD5 | 12 ++--- R/getXKCD.R | 106 +++++++++++++++++++++++++++++++++++++++++++++------- man/getXKCD.Rd | 11 ++++- man/saveConfig.Rd | 3 - man/searchXKCD.Rd | 3 - man/updateConfig.Rd | 3 - 7 files changed, 120 insertions(+), 35 deletions(-)
Title: Optimum Contribution Selection and Population Genetics
Description: A framework for the optimization of breeding programs via optimum contribution selection. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees.
Author: Robin Wellmann
Maintainer: Robin Wellmann <r.wellmann@uni-hohenheim.de>
Diff between optiSel versions 0.6.1 dated 2017-03-30 and 0.6.2 dated 2017-03-31
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- build/partial.rdb |binary src/rcpp_genecont.cpp | 2 +- src/rcpp_haplofreq.cpp | 17 ++++++++++++----- src/rcpp_segIBD.cpp | 4 ++++ src/rcpp_segIBDandN.cpp | 2 ++ src/rcpp_segIBDandNVersion2.cpp | 3 +++ src/rcpp_segInbreeding.cpp | 4 ++++ vignettes/ocs-vignette.Rmd | 9 +++++++-- 10 files changed, 45 insertions(+), 20 deletions(-)
Title: Easy Authentication with Google OAuth2 API
Description: Create R functions that interact with OAuth2 Google APIs easily,
with auto-refresh and Shiny compatibility.
Author: Mark Edmondson [aut, cre],
Jennifer Bryan [ctb],
Johann deBoer [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAuthR versions 0.5.0 dated 2017-03-02 and 0.5.1 dated 2017-03-31
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/googleAuthR_auto_auth.R | 3 +-- README.md | 8 +++++++- inst/doc/building.html | 4 ++-- inst/doc/google-authentication-types.html | 4 ++-- inst/doc/setup.html | 4 ++-- 8 files changed, 30 insertions(+), 19 deletions(-)
Title: Dynamic Model of Choice with Parallel Computation, and C++
Capabilities
Description: A fast engine for computing hierarchical Bayesian model
implemented in the Dynamic Model of Choice.
Author: Yi-Shin Lin [aut, cre], Andrew Heathcote [aut]
Maintainer: Yi-Shin Lin <yishin.lin@utas.edu.au>
Diff between ggdmc versions 0.1.3.8 dated 2017-03-28 and 0.1.3.9 dated 2017-03-31
DESCRIPTION | 8 ++--- MD5 | 10 +++---- NEWS | 6 +++- README.md | 4 +- src/density.cpp | 40 ++++++++++++++--------------- src/tnorm_wrapper.cpp | 67 ++++++++++++++++++++++---------------------------- 6 files changed, 66 insertions(+), 69 deletions(-)
Title: Timestamps and Advanced Plotting
Description: Contains facilities such as getting the current timestamp in decimal seconds, computing interval w.r.t. a reference timestamp, and custom plotting with error bars.
Author: Pierrick Bruneau
Maintainer: Pierrick Bruneau <pbruneau@gmail.com>
Diff between datautils versions 0.1.4 dated 2013-10-18 and 0.1.5 dated 2017-03-31
datautils-0.1.4/datautils/src/config.h |only datautils-0.1.5/datautils/DESCRIPTION | 14 ++++++-------- datautils-0.1.5/datautils/MD5 | 13 +++++++------ datautils-0.1.5/datautils/NAMESPACE | 9 +++++++-- datautils-0.1.5/datautils/R/functions.R | 6 +++--- datautils-0.1.5/datautils/cleanup |only datautils-0.1.5/datautils/man/plot.deldir.Rd | 4 ++-- datautils-0.1.5/datautils/src/datautils_init.c |only datautils-0.1.5/datautils/src/utils.c | 2 +- 9 files changed, 26 insertions(+), 22 deletions(-)
Title: Focused, Interactive Multidimensional Scaling
Description: Takes a distance matrix and plots it as an
interactive graph. One point is focused at the center of the graph,
around which all other points are plotted in their exact distances as
given in the distance matrix. All other non-focus points are plotted
as best as possible in relation to one another. Double click on any
point to choose a new focus point, and hover over points to see their
ID labels. If color label categories are given, hover over colors in
the legend to highlight only those points and click on colors to
highlight multiple groups. For more information on the rationale
and mathematical background, as well as an interactive introduction,
see <https://lea-urpa.github.io/focusedMDS.html>.
Author: Lea Urpa [cre],
Simon Anders [aut]
Maintainer: Lea Urpa <lea.urpa@helsinki.fi>
Diff between focusedMDS versions 1.2.4 dated 2017-03-22 and 1.3.3 dated 2017-03-31
DESCRIPTION | 25 ++++----- MD5 | 8 +- R/focusedMDS.R | 51 +++++++++++++------ inst/htmlwidgets/focusedMDS.js | 110 +++++++++++++++++++++++++++++++++++++---- man/focusedMDS.Rd | 4 + 5 files changed, 158 insertions(+), 40 deletions(-)
Title: Searching for Optimal Clustering Procedure for a Data Set
Description: Distance measures (GDM1, GDM2, Sokal-Michener, Bray-Curtis, for symbolic interval-valued data), cluster quality indices (Calinski-Harabasz, Baker-Hubert, Hubert-Levine, Silhouette, Krzanowski-Lai, Hartigan, Gap, Davies-Bouldin), data normalization formulas, data generation (typical and non-typical data), HINoV method, replication analysis, linear ordering methods, spectral clustering, agreement indices between two partitions, plot functions (for categorical and symbolic interval-valued data).
Author: Marek Walesiak <marek.walesiak@ue.wroc.pl> Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Maintainer: Andrzej Dudek <andrzej.dudek@ue.wroc.pl>
Diff between clusterSim versions 0.45-1 dated 2016-11-01 and 0.45-2 dated 2017-03-31
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- R/index.GAP.r | 7 +++++-- data/data_binary.rda |binary data/data_interval.rda |binary data/data_mixed.rda |binary data/data_nominal.rda |binary data/data_ordinal.rda |binary data/data_ratio.rda |binary src/clusterSim.cpp | 7 +++++++ 10 files changed, 26 insertions(+), 16 deletions(-)
Title: Temporal Exponential Random Graph Models by Bootstrapped
Pseudolikelihood
Description: Temporal Exponential Random Graph Models (TERGM) estimated by maximum pseudolikelihood with bootstrapped confidence intervals or Markov Chain Monte Carlo maximum likelihood. Goodness of fit assessment for ERGMs, TERGMs, and SAOMs. Micro-level interpretation of ERGMs and TERGMs.
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [ctb],
Bruce A. Desmarais [ctb]
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>
Diff between btergm versions 1.8.2 dated 2017-01-29 and 1.9.0 dated 2017-03-31
btergm-1.8.2/btergm/man/timecov.Rd |only btergm-1.9.0/btergm/DESCRIPTION | 11 - btergm-1.9.0/btergm/MD5 | 44 +++--- btergm-1.9.0/btergm/NAMESPACE | 7 - btergm-1.9.0/btergm/R/btergm.R | 24 ++- btergm-1.9.0/btergm/R/checkdegeneracy.R | 1 btergm-1.9.0/btergm/R/gofmethods.R | 72 +++++++--- btergm-1.9.0/btergm/R/gofplot.R | 8 - btergm-1.9.0/btergm/R/gofstatistics.R | 200 ++++++++++++++++------------- btergm-1.9.0/btergm/R/interpretation.R | 116 ++++++++++++++++ btergm-1.9.0/btergm/R/mtergm.R | 20 +- btergm-1.9.0/btergm/R/tergmprepare.R | 28 +++- btergm-1.9.0/btergm/man/btergm-class.Rd | 5 btergm-1.9.0/btergm/man/btergm-package.Rd | 10 + btergm-1.9.0/btergm/man/btergm.Rd | 20 +- btergm-1.9.0/btergm/man/checkdegeneracy.Rd | 10 + btergm-1.9.0/btergm/man/edgeprob.Rd | 17 ++ btergm-1.9.0/btergm/man/gofmethods.Rd | 35 ++++- btergm-1.9.0/btergm/man/gofplot.Rd | 14 +- btergm-1.9.0/btergm/man/gofstatistics.Rd | 170 ++++++++++++------------ btergm-1.9.0/btergm/man/interpret.Rd | 11 + btergm-1.9.0/btergm/man/marginalplot.Rd |only btergm-1.9.0/btergm/man/simulate.btergm.Rd | 37 +++++ btergm-1.9.0/btergm/man/tergm-terms.Rd | 16 +- 24 files changed, 604 insertions(+), 272 deletions(-)
Title: Common Infrastructure for Extensions of Exponential Random Graph
Models
Description: Datasets and definitions of generic functions used in dependencies of the 'xergm' package.
Author: Philip Leifeld [aut, cre],
Skyler J. Cranmer [ctb],
Bruce A. Desmarais [ctb]
Maintainer: Philip Leifeld <philip.leifeld@glasgow.ac.uk>
Diff between xergm.common versions 1.7.4 dated 2016-06-18 and 1.7.7 dated 2017-03-31
xergm.common-1.7.4/xergm.common/man/preprocess.Rd |only xergm.common-1.7.7/xergm.common/DESCRIPTION | 15 xergm.common-1.7.7/xergm.common/MD5 | 23 - xergm.common-1.7.7/xergm.common/NAMESPACE | 1 xergm.common-1.7.7/xergm.common/R/preprocess.R | 241 ------------- xergm.common-1.7.7/xergm.common/R/xergm.common.R | 2 xergm.common-1.7.7/xergm.common/data/alliances.RData |binary xergm.common-1.7.7/xergm.common/data/chemnet.rda |binary xergm.common-1.7.7/xergm.common/data/knecht.rda |binary xergm.common-1.7.7/xergm.common/inst/CITATION | 14 xergm.common-1.7.7/xergm.common/man/adjust.Rd | 2 xergm.common-1.7.7/xergm.common/man/handleMissings.Rd | 2 xergm.common-1.7.7/xergm.common/man/knecht.Rd | 327 ++++-------------- 13 files changed, 105 insertions(+), 522 deletions(-)
Title: Latent Variable Models with Censored and Binary Outcomes
Description: Lava plugin allowing combinations of left and right censored and
binary outcomes.
Author: Klaus K. Holst
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between lava.tobit versions 0.4-7 dated 2012-08-16 and 0.5 dated 2017-03-31
DESCRIPTION | 25 +++--- MD5 | 32 ++++---- NAMESPACE | 13 ++- R/binary.R | 7 + R/clprobit.R | 70 +++++++++-------- R/hooks.R | 94 ++--------------------- R/lava.tobit-package.R | 10 +- R/onload.R | 21 ++--- R/plotres.R | 89 ++++++++++++---------- R/rbind.Surv.R | 3 R/tobit.R | 193 +++++++++++++++++++++++++------------------------ man/binary.Rd | 43 +++++----- man/clprobit.Rd | 49 +++++------- man/internal.Rd | 14 +-- man/lava.tobit.Rd | 30 ++++--- man/plotres.Rd | 32 ++++---- man/rbind.Surv.Rd | 15 ++- 17 files changed, 349 insertions(+), 391 deletions(-)
Title: Detecting Breakpoints and Estimating Segments in Trend
Description: A program for analyzing vegetation time series, with two algorithms: 1) change detection algorithm that detects trend changes, determines their type (abrupt or non-abrupt), and estimates their timing, magnitude, number, and direction; 2) generalization algorithm that simplifies the temporal trend into main features. The user can set the number of major breakpoints or magnitude of greatest changes of interest for detection, and can control the generalization process by setting an additional parameter of generalization-percentage.
Author: Sadegh Jamali, Hristo Tomov
Maintainer: Hristo Tomov <tomov.hristo@gmail.com>
Diff between DBEST versions 1.4 dated 2016-11-15 and 1.5 dated 2017-03-31
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/Trend_local_change.R | 20 ++++++++++++-------- 3 files changed, 18 insertions(+), 14 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-30 0.0-31
2016-03-09 0.0-30
2013-12-10 0.0-27
2012-05-30 0.0-25
2011-01-19 0.0-19
2010-09-24 0.0-17
2010-09-22 0.0-16
Title: Modeling Spatial Poisson and Related Point Processes
Description: Implements classes and methods for modeling spatial point patterns using inhomogeneous Poisson point processes, where the intensity surface is assumed to be analogous to a finite additive mixture of normal components and the number of components is a finite, fixed or random integer. Extensions to the marked inhomogeneous Poisson point processes case are also presented. We provide an extensive suite of R functions that can be used to simulate, visualize and model point patterns, estimate the parameters of the models, assess convergence of the algorithms and perform model selection and checking in the proposed modeling context.
Author: Jiaxun Chen <chenjiaxun9@hotmail.com>
and Athanasios (Sakis) Christou Micheas <micheasa@missouri.edu>.
Significant contributions on the package skeleton creation, plotting functions and other code by
Yuchen Wang <ycwang0712@gmail.com>
Maintainer: Sakis Micheas <micheasa@missouri.edu>
Diff between sppmix versions 1.0.0.0 dated 2017-02-23 and 1.0.1 dated 2017-03-31
DESCRIPTION | 6 +++--- MD5 | 17 +++++++++-------- NAMESPACE | 2 -- NEWS |only inst/doc/tutorials_link.html | 4 ++-- inst/include/sppmix.h | 2 +- src/ApproxFuncs_sppmix.cpp | 4 ++-- src/OpsPostGens_sppmix.cpp | 6 +++--- src/OtherAPIs_sppmix.cpp | 2 +- src/SimulFuncs_sppmix.cpp | 10 ++++------ 10 files changed, 25 insertions(+), 28 deletions(-)
Title: Bayesian Modeling and Analysis of Spatially Correlated Survival
Data
Description: Provides several Bayesian survival models for spatial/non-spatial survival data: marginal Bayesian Nonparametric models, marginal Bayesian proportional hazards models, generalized accelerated failure time frailty models, and standard semiparametric frailty models within the context of proportional hazards, proportional odds and accelerated failure time.
Author: Haiming Zhou <zhouh@niu.edu> and Tim Hanson <hansont@stat.sc.edu>
Maintainer: Haiming Zhou <zhouh@niu.edu>
Diff between spBayesSurv versions 1.0.6 dated 2016-12-14 and 1.1.0 dated 2017-03-31
spBayesSurv-1.0.6/spBayesSurv/man/spBayesSurv-package.Rd |only spBayesSurv-1.1.0/spBayesSurv/DESCRIPTION | 10 spBayesSurv-1.1.0/spBayesSurv/MD5 | 106 - spBayesSurv-1.1.0/spBayesSurv/NAMESPACE | 13 spBayesSurv-1.1.0/spBayesSurv/R/GetCurves.R | 87 spBayesSurv-1.1.0/spBayesSurv/R/SuperSurvRegBayes.R | 14 spBayesSurv-1.1.0/spBayesSurv/R/anovaDDP.R | 390 ++- spBayesSurv-1.1.0/spBayesSurv/R/frailtyGAFT.R | 1055 +++++----- spBayesSurv-1.1.0/spBayesSurv/R/indeptCoxph.R | 489 +++- spBayesSurv-1.1.0/spBayesSurv/R/spCopulaCoxph.R | 622 ++++- spBayesSurv-1.1.0/spBayesSurv/R/spCopulaDDP.R | 463 ++-- spBayesSurv-1.1.0/spBayesSurv/R/survregbayes.R | 127 - spBayesSurv-1.1.0/spBayesSurv/R/survregbayes2.R | 18 spBayesSurv-1.1.0/spBayesSurv/R/wrappers.R | 123 - spBayesSurv-1.1.0/spBayesSurv/build |only spBayesSurv-1.1.0/spBayesSurv/data |only spBayesSurv-1.1.0/spBayesSurv/inst |only spBayesSurv-1.1.0/spBayesSurv/man/GetCurves.Rd | 32 spBayesSurv-1.1.0/spBayesSurv/man/LeukSurv.Rd |only spBayesSurv-1.1.0/spBayesSurv/man/SuperSurvRegBayes.Rd | 3 spBayesSurv-1.1.0/spBayesSurv/man/anovaDDP.Rd | 296 -- spBayesSurv-1.1.0/spBayesSurv/man/b_spline.Rd |only spBayesSurv-1.1.0/spBayesSurv/man/frailtyGAFT.Rd | 33 spBayesSurv-1.1.0/spBayesSurv/man/frailtyprior.Rd | 56 spBayesSurv-1.1.0/spBayesSurv/man/indeptCoxph.Rd | 273 -- spBayesSurv-1.1.0/spBayesSurv/man/predict.b_spline.Rd |only spBayesSurv-1.1.0/spBayesSurv/man/spCopulaCoxph.Rd | 282 +- spBayesSurv-1.1.0/spBayesSurv/man/spCopulaDDP.Rd | 368 +-- spBayesSurv-1.1.0/spBayesSurv/man/survregbayes.Rd | 7 spBayesSurv-1.1.0/spBayesSurv/man/survregbayes2.Rd | 7 spBayesSurv-1.1.0/spBayesSurv/src/registerDynamicSymbol.c |only spBayesSurv-1.1.0/spBayesSurv/src/spSurv_AFT_BP.cpp | 2 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_Coxph_tools.cpp | 224 -- spBayesSurv-1.1.0/spBayesSurv/src/spSurv_Coxph_tools.h | 30 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_DDP_tools.cpp | 104 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_DDP_tools.h | 18 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_LDTFP_tools.cpp | 12 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_PH_BP.cpp | 2 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_PO_BP.cpp | 2 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_anovaDDP.cpp | 8 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_common.cpp | 50 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_frailty_GRF_LDTFP.cpp | 2 spBayesSurv-1.1.0/spBayesSurv/src/spSurv_indeptCoxph.cpp | 407 +-- spBayesSurv-1.1.0/spBayesSurv/src/spSurv_spCopulaCoxph.cpp | 473 +--- spBayesSurv-1.1.0/spBayesSurv/src/spSurv_spCopulaDDP.cpp | 347 --- spBayesSurv-1.1.0/spBayesSurv/src/spSurv_spatialtools.cpp | 147 - spBayesSurv-1.1.0/spBayesSurv/src/spSurv_spatialtools.h | 21 spBayesSurv-1.1.0/spBayesSurv/vignettes |only 48 files changed, 3238 insertions(+), 3485 deletions(-)
Title: R and Python Integration
Description: Run 'Python' code, make function calls, assign and retrieve variables, etc. from R.
A fork from 'rPython' which uses 'jsonlite', 'Rcpp' and has several fixes and improvements.
Author: Alexandre Sieira, forked off of rPython by Carlos J. Gil Bellosta
Maintainer: Alexandre Sieira <alexandre.sieira@gmail.com>
Diff between SnakeCharmR versions 1.0.4 dated 2016-09-12 and 1.0.6 dated 2017-03-31
SnakeCharmR-1.0.4/SnakeCharmR/INSTALL |only SnakeCharmR-1.0.6/SnakeCharmR/DESCRIPTION | 12 +++--- SnakeCharmR-1.0.6/SnakeCharmR/MD5 | 36 ++++++++++---------- SnakeCharmR-1.0.6/SnakeCharmR/NAMESPACE | 2 - SnakeCharmR-1.0.6/SnakeCharmR/NEWS | 18 ++++++++++ SnakeCharmR-1.0.6/SnakeCharmR/R/SnakeCharmR.r | 2 - SnakeCharmR-1.0.6/SnakeCharmR/R/misc.R | 5 +- SnakeCharmR-1.0.6/SnakeCharmR/README.md | 2 - SnakeCharmR-1.0.6/SnakeCharmR/configure | 41 ++++++----------------- SnakeCharmR-1.0.6/SnakeCharmR/configure.ac | 24 +------------ SnakeCharmR-1.0.6/SnakeCharmR/man/SnakeCharmR.Rd | 1 SnakeCharmR-1.0.6/SnakeCharmR/man/py.assign.Rd | 1 SnakeCharmR-1.0.6/SnakeCharmR/man/py.call.Rd | 1 SnakeCharmR-1.0.6/SnakeCharmR/man/py.exec.Rd | 1 SnakeCharmR-1.0.6/SnakeCharmR/man/py.get.Rd | 1 SnakeCharmR-1.0.6/SnakeCharmR/man/py.load.Rd | 1 SnakeCharmR-1.0.6/SnakeCharmR/man/py.rm.Rd | 1 SnakeCharmR-1.0.6/SnakeCharmR/src/Makevars.in | 2 - SnakeCharmR-1.0.6/SnakeCharmR/src/python.cpp | 15 ++++++-- SnakeCharmR-1.0.6/SnakeCharmR/tools |only 20 files changed, 74 insertions(+), 92 deletions(-)
Title: Generator of Semi-Artificial Data
Description: Contains methods to generate and evaluate semi-artificial data sets.
Based on a given data set different methods learn data properties using machine learning algorithms and
generate new data with the same properties.
The package currently includes the following data generators:
i) a RBF network based generator using rbfDDA() from package 'RSNNS',
ii) a Random Forest based generator for both classification and regression problems
iii) a density forest based generator for unsupervised data
Data evaluation support tools include:
a) single attribute based statistical evaluation: mean, median, standard deviation, skewness, kurtosis, medcouple, L/RMC, KS test, Hellinger distance
b) evaluation based on clustering using Adjusted Rand Index (ARI) and FM
c) evaluation based on classification performance with various learning models, e.g., random forests.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>
Diff between semiArtificial versions 2.2.4 dated 2017-03-26 and 2.2.5 dated 2017-03-31
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- NAMESPACE | 4 +++- 3 files changed, 11 insertions(+), 9 deletions(-)
More information about semiArtificial at CRAN
Permanent link
Title: Sequential Co-Sparse Factor Regression
Description: Sequential factor extraction via co-sparse unit-rank estimation (SeCURE).
Author: Aditya Mishra [aut, cre], Kun Chen [aut, cre]
Maintainer: Aditya Mishra <aditya.mishra@uconn.edu>
Diff between secure versions 0.1 dated 2017-03-24 and 0.2 dated 2017-03-31
DESCRIPTION | 12 +- MD5 | 12 +- NAMESPACE | 2 R/secure.R | 42 ++++++-- man/secure.path.Rd | 236 ++++++++++++++++++++++++------------------------- man/secure.sim.Rd | 112 +++++++++++------------ src/sefar_SURR_fit.cpp | 42 ++++---- 7 files changed, 244 insertions(+), 214 deletions(-)
Title: River Network Distance Computation and Applications
Description: Reads river network shape files and computes network distances.
Also included are a variety of computation and graphical tools designed
for fisheries telemetry research, such as minimum home range, kernel density
estimation, and clustering analysis using empirical k-functions with
a bootstrap envelope. Tools are also provided for editing the river
networks, meaning there is no reliance on external software.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matt.tyers@alaska.gov>
Diff between riverdist versions 0.13.1 dated 2017-02-06 and 0.14.0 dated 2017-03-31
DESCRIPTION | 8 MD5 | 40 +- NAMESPACE | 5 NEWS.md | 18 + R/apps_of_direction.R | 16 R/apps_of_riverdistance.R | 691 ++++++++++++++++++++++++++++++--------- R/dataset_help.R | 17 R/riverdist_1.R | 23 - README.md | 2 build/vignette.rds |binary inst/doc/riverdist_vignette.R | 13 inst/doc/riverdist_vignette.Rmd | 22 + inst/doc/riverdist_vignette.html | 59 ++- man/homerange-class.Rd |only man/homerange.Rd | 35 + man/homerangeoverlap.Rd |only man/mouthdist.Rd | 7 man/plot.homerange.Rd |only man/plot.rivernetwork.Rd | 8 man/plothomerangeoverlap.Rd |only man/riverdist-package.Rd | 4 tests/testthat/test_riverdist.R | 29 + vignettes/riverdist_vignette.Rmd | 22 + 23 files changed, 788 insertions(+), 231 deletions(-)
Title: Nondetects and Data Analysis for Environmental Data
Description: Contains methods described by Dennis Helsel in
his book "Nondetects And Data Analysis: Statistics
for Censored Environmental Data".
Author: Lopaka Lee
Maintainer: Lopaka Lee <rclee@usgs.gov>
Diff between NADA versions 1.5-6 dated 2013-12-06 and 1.6-1 dated 2017-03-31
DESCRIPTION | 12 ++-- MD5 | 116 +++++++++++++++++++++--------------------- NAMESPACE | 5 - R/All.R | 29 +--------- R/mle.R | 2 R/ros.R | 83 ++++++++++++++++++++---------- data/Ag.rda |binary data/Arsenic.rda |binary data/AsExample.rda |binary data/Atra.rda |binary data/AtraAlt.rda |binary data/Atrazine.rda |binary data/Bloodlead.rda |binary data/Cadmium.rda |binary data/ChlfmCA.rda |binary data/CuZn.rda |binary data/CuZnAlt.rda |binary data/DFe.rda |binary data/DOC.rda |binary data/Golden.rda |binary data/Hatchery.rda |binary data/HgFish.rda |binary data/MDCu.rda |binary data/NADA.As.rda |binary data/Oahu.rda |binary data/Recon.rda |binary data/Roach.rda |binary data/SedPb.rda |binary data/ShePyrene.rda |binary data/Silver.rda |binary data/TCE.rda |binary data/TCEReg.rda |binary data/Tbl1one.rda |binary data/Thames.rda |binary man/Cen.Rd | 2 man/NADA-internal.Rd | 4 - man/NADAList-class.Rd | 2 man/cenboxplot.Rd | 2 man/cendiff.Rd | 2 man/cenfit-class.Rd | 3 - man/cenfit.Rd | 2 man/cenken-class.Rd | 2 man/cenmle-class.Rd | 2 man/cenmle-gaussian-class.Rd | 2 man/cenmle-lognormal-class.Rd | 2 man/cenmle.Rd | 2 man/cenreg-class.Rd | 2 man/cenreg-gaussian-class.Rd | 2 man/cenreg-lognormal-class.Rd | 2 man/cenreg.Rd | 2 man/censtats.Rd | 2 man/censummary.Rd | 2 man/cenxyplot.Rd | 2 man/hc.ppoints.Rd | 19 ++++-- man/pctCen.Rd | 11 +++ man/ros-class.Rd | 2 man/ros.Rd | 14 +++-- man/splitQual.Rd | 2 man/summary.cenreg-class.Rd | 2 59 files changed, 185 insertions(+), 153 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc],
Michael Dietze [aut],
Christoph Burow [aut, trl, dtc],
Margret C. Fuchs [aut],
Christoph Schmidt [aut],
Manfred Fischer [aut, trl],
Johannes Friedrich [aut],
Norbert Mercier [ctb],
Rachel K. Smedley [ctb],
Claire Christophe [ctb],
Antoine Zink [ctb],
Julie Durcan [ctb],
Georgina King [ctb, dtc],
Anne Philippe [ctb],
Guillaume Guerin [ctb],
Markus Fuchs [ths]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@u-bordeaux-montaigne.fr>
Diff between Luminescence versions 0.7.3 dated 2017-02-08 and 0.7.4 dated 2017-03-31
DESCRIPTION | 8 MD5 | 281 +++++++++++----------- NAMESPACE | 2 NEWS | 92 +++++++ R/Luminescence-package.R | 6 R/RLum.Analysis-class.R | 3 R/RisoeBINfileData-class.R | 129 ++++++++-- R/analyse_FadingMeasurement.R | 12 R/analyse_SAR.CWOSL.R | 3 R/analyse_SAR.TL.R | 344 ++++++++++++++++----------- R/analyse_baSAR.R | 4 R/calc_Kars2008.R | 4 R/calc_MinDose.R | 20 + R/calc_OSLLxTxRatio.R | 2 R/calc_TLLxTxRatio.R | 49 +-- R/get_Layout.R | 14 - R/merge_Risoe.BINfileData.R | 10 R/plot_GrowthCurve.R | 88 +++--- R/plot_KDE.R | 68 +++-- R/plot_RLum.Analysis.R | 35 ++ R/plot_RLum.Data.Spectrum.R | 57 +++- R/read_BIN2R.R | 67 ++++- R/set_Risoe.BINfileData.R | 11 R/write_R2BIN.R | 18 - data/ExampleData.BINfileData.RData |binary inst/NEWS.Rd | 122 +++++++++ man/Analyse_SAR.OSLdata.Rd | 2 man/CW2pHMi.Rd | 4 man/CW2pLM.Rd | 4 man/CW2pLMi.Rd | 4 man/CW2pPMi.Rd | 4 man/ExampleData.Fading.Rd | 2 man/GitHub-API.Rd | 2 man/Luminescence-package.Rd | 2 man/PSL2Risoe.BINfileData.Rd | 4 man/RLum-class.Rd | 2 man/RLum.Analysis-class.Rd | 2 man/RLum.Data.Curve-class.Rd | 2 man/RLum.Data.Image-class.Rd | 2 man/RLum.Data.Spectrum-class.Rd | 2 man/RLum.Results-class.Rd | 2 man/Risoe.BINfileData-class.Rd | 9 man/Risoe.BINfileData2RLum.Analysis.Rd | 2 man/Second2Gray.Rd | 2 man/analyse_FadingMeasurement.Rd | 4 man/analyse_IRSAR.RF.Rd | 4 man/analyse_SAR.CWOSL.Rd | 7 man/analyse_SAR.TL.Rd | 16 - man/analyse_baSAR.Rd | 4 man/analyse_pIRIRSequence.Rd | 2 man/analyse_portableOSL.Rd | 4 man/app_RLum.Rd | 2 man/apply_CosmicRayRemoval.Rd | 2 man/apply_EfficiencyCorrection.Rd | 2 man/bin_RLum.Data.Rd | 2 man/calc_AliquotSize.Rd | 2 man/calc_AverageDose.Rd | 2 man/calc_CentralDose.Rd | 2 man/calc_CommonDose.Rd | 2 man/calc_CosmicDoseRate.Rd | 2 man/calc_FadingCorr.Rd | 2 man/calc_FastRatio.Rd | 2 man/calc_FiniteMixture.Rd | 2 man/calc_FuchsLang2001.Rd | 2 man/calc_HomogeneityTest.Rd | 2 man/calc_IEU.Rd | 2 man/calc_Kars2008.Rd | 4 man/calc_MaxDose.Rd | 2 man/calc_MinDose.Rd | 22 + man/calc_OSLLxTxRatio.Rd | 4 man/calc_SourceDoseRate.Rd | 2 man/calc_Statistics.Rd | 4 man/calc_TLLxTxRatio.Rd | 10 man/calc_ThermalLifetime.Rd | 4 man/calc_gSGC.Rd | 2 man/convert_BIN2CSV.Rd | 2 man/convert_Daybreak2CSV.Rd | 2 man/convert_PSL2CSV.Rd | 2 man/convert_XSYG2CSV.Rd | 2 man/extract_IrradiationTimes.Rd | 2 man/fit_CWCurve.Rd | 4 man/fit_LMCurve.Rd | 4 man/get_Layout.Rd | 4 man/get_Quote.Rd | 4 man/get_RLum.Rd | 2 man/get_Risoe.BINfileData.Rd | 2 man/get_rightAnswer.Rd | 2 man/length_RLum.Rd | 2 man/merge_RLum.Analysis.Rd | 2 man/merge_RLum.Data.Curve.Rd | 2 man/merge_RLum.Rd | 2 man/merge_RLum.Results.Rd | 2 man/merge_Risoe.BINfileData.Rd | 10 man/model_LuminescenceSignals.Rd | 4 man/names_RLum.Rd | 2 man/plot_AbanicoPlot.Rd | 4 man/plot_DRTResults.Rd | 4 man/plot_DetPlot.Rd | 2 man/plot_FilterCombinations.Rd | 2 man/plot_GrowthCurve.Rd | 17 - man/plot_Histogram.Rd | 2 man/plot_KDE.Rd | 4 man/plot_NRt.Rd | 2 man/plot_RLum.Analysis.Rd | 4 man/plot_RLum.Data.Curve.Rd | 2 man/plot_RLum.Data.Image.Rd | 2 man/plot_RLum.Data.Spectrum.Rd | 15 - man/plot_RLum.Rd | 2 man/plot_RLum.Results.Rd | 2 man/plot_RadialPlot.Rd | 2 man/plot_Risoe.BINfileData.Rd | 2 man/plot_ViolinPlot.Rd | 4 man/read_BIN2R.Rd | 4 man/read_Daybreak2R.Rd | 2 man/read_PSL2R.Rd | 2 man/read_SPE2R.Rd | 4 man/read_XSYG2R.Rd | 2 man/replicate_RLum.Rd | 2 man/report_RLum.Rd | 4 man/sTeve.Rd | 2 man/set_RLum.Rd | 2 man/set_Risoe.BINfileData.Rd | 7 man/smooth_RLum.Rd | 2 man/structure_RLum.Rd | 2 man/template_DRAC.Rd | 2 man/tune_Data.Rd | 2 man/use_DRAC.Rd | 2 man/verify_SingleGrainData.Rd | 2 man/write_R2BIN.Rd | 4 man/write_RLum2CSV.Rd | 2 src/Luminescence_init.c |only tests/testthat/test_CW2pX.R | 10 tests/testthat/test_RisoeBINfileData-class.R | 4 tests/testthat/test_analyse_IRSARRF.R | 21 + tests/testthat/test_analyse_SARTL.R |only tests/testthat/test_calc_FadingCorr.R | 8 tests/testthat/test_convert_X2CSV.R |only tests/testthat/test_merge_RLumDataCurve.R |only tests/testthat/test_merge_RisoeBINfileData.R |only tests/testthat/test_names_RLum.R |only tests/testthat/test_plot_AbanicoPlot.R |only tests/testthat/test_plot_Functions.R | 40 ++- tests/testthat/test_read_BIN2R.R |only tests/testthat/test_replicate_RLum.R |only tests/testthat/test_template_DRAC.R |only tests/testthat/test_write_R2BIN.R |only tests/testthat/test_write_RLum2CSV.R |only tests/testthat/test_zzz.R |only 148 files changed, 1248 insertions(+), 641 deletions(-)
Title: Less Code, More Results
Description: Each function accomplishes the work of several or more standard R functions. For example, two function calls, Read() and CountAll(), read the data and generate summary statistics for all variables in the data frame, plus histograms and bar charts as appropriate. Other functions provide for descriptive statistics, a comprehensive regression analysis, analysis of variance and t-test, plotting, bar chart, histogram, box plot, density curves, calibrated power curve, reading multiple data formats with the same function call, variable labels, color themes, Trellis graphics and a built-in help system. A confirmatory factor analysis of multiple indicator measurement models is available, as are pedagogical routines for data simulation such as for the Central Limit Theorem. Compatible with 'RStudio' and 'knitr' including generation of R markdown instructions for interpretative output.
Author: David W. Gerbing, School of Business Administration, Portland State University
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 3.5.5 dated 2017-02-08 and 3.6.0 dated 2017-03-31
lessR-3.5.5/lessR/man/theme.Rd |only lessR-3.6.0/lessR/DESCRIPTION | 14 lessR-3.6.0/lessR/MD5 | 127 ++- lessR-3.6.0/lessR/NAMESPACE | 13 lessR-3.6.0/lessR/NEWS | 92 ++ lessR-3.6.0/lessR/R/BarChart.R | 104 +-- lessR-3.6.0/lessR/R/BoxPlot.R | 37 - lessR-3.6.0/lessR/R/Density.R | 4 lessR-3.6.0/lessR/R/Help.R | 84 +- lessR-3.6.0/lessR/R/Histogram.R | 326 ++++++--- lessR-3.6.0/lessR/R/LineChart.R | 21 lessR-3.6.0/lessR/R/PieChart.R | 4 lessR-3.6.0/lessR/R/Plot.R | 698 +++++++++++++-------- lessR-3.6.0/lessR/R/Read.R | 6 lessR-3.6.0/lessR/R/Regression.R | 2 lessR-3.6.0/lessR/R/Sort.R | 6 lessR-3.6.0/lessR/R/SummaryStats.R | 10 lessR-3.6.0/lessR/R/bc.data.frame.R | 14 lessR-3.6.0/lessR/R/bc.zmain.R | 288 +++++--- lessR-3.6.0/lessR/R/bx.zmain.R | 137 ++-- lessR-3.6.0/lessR/R/corScree.R | 4 lessR-3.6.0/lessR/R/cr.data.frame.R | 2 lessR-3.6.0/lessR/R/details.R | 2 lessR-3.6.0/lessR/R/dn.zmain.R | 8 lessR-3.6.0/lessR/R/dp.zmain.R | 244 +++---- lessR-3.6.0/lessR/R/dpmat.zmain.R | 161 ++-- lessR-3.6.0/lessR/R/global.R |only lessR-3.6.0/lessR/R/hst.zlattice.R |only lessR-3.6.0/lessR/R/hst.zmain.R | 16 lessR-3.6.0/lessR/R/lc.zmain.R | 6 lessR-3.6.0/lessR/R/plt.by.zlegend.R | 13 lessR-3.6.0/lessR/R/plt.zadd.R |only lessR-3.6.0/lessR/R/plt.zbad.R | 53 + lessR-3.6.0/lessR/R/plt.zlattice.R |only lessR-3.6.0/lessR/R/plt.zlegend.R | 16 lessR-3.6.0/lessR/R/plt.zmain.R | 993 ++++++++---------------------- lessR-3.6.0/lessR/R/plt.zmat.R |only lessR-3.6.0/lessR/R/plt.ztxt.R |only lessR-3.6.0/lessR/R/reg.z5Plot.R | 74 +- lessR-3.6.0/lessR/R/set.R | 4 lessR-3.6.0/lessR/R/ss.zfactor.R | 9 lessR-3.6.0/lessR/R/ss.zreal.R |only lessR-3.6.0/lessR/R/theme.R | 263 ------- lessR-3.6.0/lessR/R/tt.z1group.R | 2 lessR-3.6.0/lessR/R/tt.z2group.R | 4 lessR-3.6.0/lessR/R/tt.zformula.R | 2 lessR-3.6.0/lessR/R/zzz.R | 84 +- lessR-3.6.0/lessR/data/dataStockPrice.rda |only lessR-3.6.0/lessR/man/ANOVA.Rd | 2 lessR-3.6.0/lessR/man/BarChart.Rd | 136 ++-- lessR-3.6.0/lessR/man/BoxPlot.Rd | 28 lessR-3.6.0/lessR/man/Density.Rd | 18 lessR-3.6.0/lessR/man/Help.Rd | 15 lessR-3.6.0/lessR/man/Histogram.Rd | 102 ++- lessR-3.6.0/lessR/man/LineChart.Rd | 30 lessR-3.6.0/lessR/man/Logit.Rd | 4 lessR-3.6.0/lessR/man/PieChart.Rd | 14 lessR-3.6.0/lessR/man/Plot.Rd | 723 ++++++++++++++------- lessR-3.6.0/lessR/man/Read.Rd | 2 lessR-3.6.0/lessR/man/Regression.Rd | 16 lessR-3.6.0/lessR/man/corCFA.Rd | 6 lessR-3.6.0/lessR/man/corEFA.Rd | 2 lessR-3.6.0/lessR/man/corProp.Rd | 2 lessR-3.6.0/lessR/man/corRead.Rd | 2 lessR-3.6.0/lessR/man/corScree.Rd | 4 lessR-3.6.0/lessR/man/dataStockPrice.Rd |only lessR-3.6.0/lessR/man/global.Rd |only lessR-3.6.0/lessR/man/print_outpiece.Rd | 2 lessR-3.6.0/lessR/man/regPlot.Rd | 2 lessR-3.6.0/lessR/man/ttest.Rd | 5 70 files changed, 2593 insertions(+), 2469 deletions(-)
Title: Miscellaneous Functions for the USGS INL Project Office
Description: A collection of functions for creating high-level graphics,
performing raster-based analysis, processing MODFLOW-based models, and
overlaying multi-polygon objects. Used to support packages and scripts written
by researchers at the United States Geological Survey (USGS)
Idaho National Laboratory (INL) Project Office.
Author: Jason C. Fisher [aut, cre]
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between inlmisc versions 0.2.4 dated 2017-02-15 and 0.2.5 dated 2017-03-31
inlmisc-0.2.4/inlmisc/inst/extdata/ex3D.hds |only inlmisc-0.2.5/inlmisc/DESCRIPTION | 6 inlmisc-0.2.5/inlmisc/LICENSE.note | 126 +++++++++++++- inlmisc-0.2.5/inlmisc/MD5 | 27 +-- inlmisc-0.2.5/inlmisc/NEWS.md | 18 ++ inlmisc-0.2.5/inlmisc/R/AddInsetMap.R | 4 inlmisc-0.2.5/inlmisc/R/AddPoints.R | 22 +- inlmisc-0.2.5/inlmisc/R/PlotMap.R | 15 - inlmisc-0.2.5/inlmisc/R/ReadModflowBinary.R | 211 ++++++++++++------------- inlmisc-0.2.5/inlmisc/R/SummariseBudget.R | 127 +++++++-------- inlmisc-0.2.5/inlmisc/README.md | 9 - inlmisc-0.2.5/inlmisc/inst/extdata/ex.bud |only inlmisc-0.2.5/inlmisc/inst/extdata/ex.hds |only inlmisc-0.2.5/inlmisc/man/PlotMap.Rd | 2 inlmisc-0.2.5/inlmisc/man/ReadModflowBinary.Rd | 53 ++++-- inlmisc-0.2.5/inlmisc/man/SummariseBudget.Rd | 43 ++--- 16 files changed, 407 insertions(+), 256 deletions(-)
Title: Convenient Functions for Ensemble Time Series Forecasts
Description: Convenient functions for ensemble forecasts in R combining
approaches from the 'forecast' package. Forecasts generated from auto.arima(), ets(),
thetam(), nnetar(), stlm(), and tbats() can be combined with equal weights, weights
based on in-sample errors, or CV weights. Cross validation for time series data
and user-supplied models and forecasting functions is also supported to evaluate model accuracy.
Author: David Shaub [aut, cre],
Peter Ellis [aut]
Maintainer: David Shaub <davidshaub@gmx.com>
Diff between forecastHybrid versions 0.3.0 dated 2016-12-19 and 0.4.0 dated 2017-03-31
DESCRIPTION | 17 +- MD5 | 63 +++++----- NAMESPACE | 5 R/cvts.R | 180 ++++++++++++++++++++++++----- R/forecast.hybridModel.R | 18 +- R/helper.R |only R/hybridModel.R | 31 ++-- build/vignette.rds |binary inst/NEWS.md | 11 + man/accuracy.Rd | 1 man/accuracy.cvts.Rd | 4 man/accuracy.default.Rd | 1 man/accuracy.hybridModel.Rd | 7 - man/cvts.Rd | 18 ++ man/extractForecasts.Rd |only man/fitted.hybridModel.Rd | 1 man/forecast.hybridModel.Rd | 9 - man/forecast.thetam.Rd | 7 - man/hybridModel.Rd | 7 - man/is.hybridModel.Rd | 1 man/plot.hybridModel.Rd | 7 - man/plot.thetam.Rd | 7 - man/print.hybridModel.Rd | 1 man/residuals.hybridModel.Rd | 1 man/summary.hybridModel.Rd | 1 man/thetam.Rd | 7 - man/tsCombine.Rd |only man/tsPartition.Rd |only man/tsSubsetWithIndices.Rd |only tests/testthat/test-accuracy.r | 6 tests/testthat/test-cvts.R | 98 +++++++++++++++ tests/testthat/test-forecast.hybridModel.R | 33 +++-- tests/testthat/test-hybridModel.R | 18 +- tests/testthat/test-levels.R | 8 - tests/testthat/test-theta.R | 8 - 35 files changed, 415 insertions(+), 161 deletions(-)
More information about forecastHybrid at CRAN
Permanent link
Title: Time-Weighted Dynamic Time Warping for Satellite Image Time
Series Analysis
Description: Provides an implementation of the Time-Weighted Dynamic Time
Warping (TWDTW) method for land cover mapping using satellite image time series.
TWDTW is based on the Dynamic Time Warping technique and has achieved high
accuracy for land cover classification using satellite data. The method is
based on comparing unclassified satellite image time series with a set of known
temporal patterns (e.g. phenological cycles associated with the vegetation).
Using 'dtwSat' the user can build temporal patterns for land cover types, apply
the TWDTW analysis for satellite datasets, visualize the results of the time
series analysis, produce land cover maps, create temporal plots for land cover
change, and compute accuracy assessment metrics.
Author: Victor Maus [aut, cre],
Marius Appel [ctb],
Toni Giorgino [ctb]
Maintainer: Victor Maus <vwmaus1@gmail.com>
Diff between dtwSat versions 0.2.1 dated 2016-07-19 and 0.2.2 dated 2017-03-31
dtwSat-0.2.1/dtwSat/data/example_ts.RData |only dtwSat-0.2.1/dtwSat/data/example_ts.list.RData |only dtwSat-0.2.1/dtwSat/data/example_ts_labels.RData |only dtwSat-0.2.1/dtwSat/data/patterns.list.RData |only dtwSat-0.2.1/dtwSat/data/yearly_patterns_mt.RData |only dtwSat-0.2.1/dtwSat/man/Assessment.Rd |only dtwSat-0.2.1/dtwSat/man/example_ts.Rd |only dtwSat-0.2.1/dtwSat/man/example_ts.list.Rd |only dtwSat-0.2.1/dtwSat/man/example_ts_labels.Rd |only dtwSat-0.2.1/dtwSat/man/patterns.list.Rd |only dtwSat-0.2.1/dtwSat/man/yearly_patterns_mt.Rd |only dtwSat-0.2.2/dtwSat/DESCRIPTION | 55 + dtwSat-0.2.2/dtwSat/MD5 | 198 ++++--- dtwSat-0.2.2/dtwSat/NAMESPACE | 19 dtwSat-0.2.2/dtwSat/NEWS.md | 23 dtwSat-0.2.2/dtwSat/R/class-crossValidation.R |only dtwSat-0.2.2/dtwSat/R/class-twdtwAssessment.R |only dtwSat-0.2.2/dtwSat/R/class-twdtwMatches.R | 13 dtwSat-0.2.2/dtwSat/R/class-twdtwRaster.R | 48 + dtwSat-0.2.2/dtwSat/R/class-twdtwTimeSeries.R | 22 dtwSat-0.2.2/dtwSat/R/createPatterns.R | 4 dtwSat-0.2.2/dtwSat/R/data.R | 26 dtwSat-0.2.2/dtwSat/R/dtw.R | 23 dtwSat-0.2.2/dtwSat/R/getInternals.R | 4 dtwSat-0.2.2/dtwSat/R/getTimeSeries.R | 55 - dtwSat-0.2.2/dtwSat/R/methods.R | 199 +++++-- dtwSat-0.2.2/dtwSat/R/miscellaneous.R | 199 ++----- dtwSat-0.2.2/dtwSat/R/plot.R | 40 + dtwSat-0.2.2/dtwSat/R/plotAccuracy.R |only dtwSat-0.2.2/dtwSat/R/plotAdjustedArea.R |only dtwSat-0.2.2/dtwSat/R/plotAlignments.R | 4 dtwSat-0.2.2/dtwSat/R/plotArea.R | 74 +- dtwSat-0.2.2/dtwSat/R/plotChanges.R | 10 dtwSat-0.2.2/dtwSat/R/plotClassification.R | 4 dtwSat-0.2.2/dtwSat/R/plotCostMatrix.R | 4 dtwSat-0.2.2/dtwSat/R/plotDistance.R | 6 dtwSat-0.2.2/dtwSat/R/plotMapSamples.R |only dtwSat-0.2.2/dtwSat/R/plotMaps.R | 8 dtwSat-0.2.2/dtwSat/R/plotMatches.R | 4 dtwSat-0.2.2/dtwSat/R/plotPaths.R | 4 dtwSat-0.2.2/dtwSat/R/plotPatterns.R | 2 dtwSat-0.2.2/dtwSat/R/plotTimeSeries.R | 6 dtwSat-0.2.2/dtwSat/R/resampleTimeSeries.R | 2 dtwSat-0.2.2/dtwSat/R/subset.R | 11 dtwSat-0.2.2/dtwSat/R/twdtw.R | 11 dtwSat-0.2.2/dtwSat/R/twdtwApply.R | 86 +-- dtwSat-0.2.2/dtwSat/R/twdtwAssess.R |only dtwSat-0.2.2/dtwSat/R/twdtwClassify.R | 16 dtwSat-0.2.2/dtwSat/R/twdtwCrossValidate.R |only dtwSat-0.2.2/dtwSat/R/twdtwXtable.R |only dtwSat-0.2.2/dtwSat/R/zzz.R | 6 dtwSat-0.2.2/dtwSat/build/vignette.rds |binary dtwSat-0.2.2/dtwSat/data/MOD13Q1.MT.yearly.patterns.RData |only dtwSat-0.2.2/dtwSat/data/MOD13Q1.patterns.list.RData |only dtwSat-0.2.2/dtwSat/data/MOD13Q1.ts.RData |only dtwSat-0.2.2/dtwSat/data/MOD13Q1.ts.labels.RData |only dtwSat-0.2.2/dtwSat/data/MOD13Q1.ts.list.RData |only dtwSat-0.2.2/dtwSat/inst/CITATION | 10 dtwSat-0.2.2/dtwSat/inst/doc/applying_twdtw.R | 156 ++--- dtwSat-0.2.2/dtwSat/inst/doc/applying_twdtw.Rmd | 389 ++++++-------- dtwSat-0.2.2/dtwSat/inst/doc/applying_twdtw.pdf |binary dtwSat-0.2.2/dtwSat/inst/doc/images_array.pdf |binary dtwSat-0.2.2/dtwSat/inst/doc/images_ts.pdf |binary dtwSat-0.2.2/dtwSat/inst/doc/references.bib | 92 ++- dtwSat-0.2.2/dtwSat/inst/lucc_MT/cross_validation.RData |only dtwSat-0.2.2/dtwSat/man/MOD13Q1.MT.yearly.patterns.Rd |only dtwSat-0.2.2/dtwSat/man/MOD13Q1.patterns.list.Rd |only dtwSat-0.2.2/dtwSat/man/MOD13Q1.ts.Rd |only dtwSat-0.2.2/dtwSat/man/MOD13Q1.ts.labels.Rd |only dtwSat-0.2.2/dtwSat/man/MOD13Q1.ts.list.Rd |only dtwSat-0.2.2/dtwSat/man/createPatterns.Rd | 16 dtwSat-0.2.2/dtwSat/man/dtwSat.Rd | 7 dtwSat-0.2.2/dtwSat/man/get.Rd | 17 dtwSat-0.2.2/dtwSat/man/getDatesFromDOY.Rd | 7 dtwSat-0.2.2/dtwSat/man/getTimeSeries.Rd | 36 - dtwSat-0.2.2/dtwSat/man/linearWeight.Rd | 7 dtwSat-0.2.2/dtwSat/man/logisticWeight.Rd | 7 dtwSat-0.2.2/dtwSat/man/plot.Rd | 15 dtwSat-0.2.2/dtwSat/man/plotAccuracy.Rd |only dtwSat-0.2.2/dtwSat/man/plotAdjustedArea.Rd |only dtwSat-0.2.2/dtwSat/man/plotAlignments.Rd | 11 dtwSat-0.2.2/dtwSat/man/plotArea.Rd | 51 + dtwSat-0.2.2/dtwSat/man/plotChanges.Rd | 13 dtwSat-0.2.2/dtwSat/man/plotClassification.Rd | 11 dtwSat-0.2.2/dtwSat/man/plotCostMatrix.Rd | 11 dtwSat-0.2.2/dtwSat/man/plotDistance.Rd | 13 dtwSat-0.2.2/dtwSat/man/plotMapSamples.Rd |only dtwSat-0.2.2/dtwSat/man/plotMaps.Rd | 11 dtwSat-0.2.2/dtwSat/man/plotMatches.Rd | 11 dtwSat-0.2.2/dtwSat/man/plotPaths.Rd | 11 dtwSat-0.2.2/dtwSat/man/plotPatterns.Rd | 9 dtwSat-0.2.2/dtwSat/man/plotTimeSeries.Rd | 9 dtwSat-0.2.2/dtwSat/man/reexports.Rd | 9 dtwSat-0.2.2/dtwSat/man/resampleTimeSeries.Rd | 9 dtwSat-0.2.2/dtwSat/man/shiftDates.Rd | 15 dtwSat-0.2.2/dtwSat/man/subset.Rd | 17 dtwSat-0.2.2/dtwSat/man/twdtwApply.Rd | 33 - dtwSat-0.2.2/dtwSat/man/twdtwAssess.Rd |only dtwSat-0.2.2/dtwSat/man/twdtwAssessment-class.Rd |only dtwSat-0.2.2/dtwSat/man/twdtwClassify.Rd | 17 dtwSat-0.2.2/dtwSat/man/twdtwCrossValidate.Rd |only dtwSat-0.2.2/dtwSat/man/twdtwCrossValidation-class.Rd |only dtwSat-0.2.2/dtwSat/man/twdtwMatches-class.Rd | 37 - dtwSat-0.2.2/dtwSat/man/twdtwRaster-class.Rd | 70 +- dtwSat-0.2.2/dtwSat/man/twdtwTimeSeries-class.Rd | 45 - dtwSat-0.2.2/dtwSat/man/twdtwXtable.Rd |only dtwSat-0.2.2/dtwSat/src/computecost.f | 2 dtwSat-0.2.2/dtwSat/src/init.c |only dtwSat-0.2.2/dtwSat/src/tracepath.f | 2 dtwSat-0.2.2/dtwSat/vignettes/applying_twdtw.Rmd | 389 ++++++-------- dtwSat-0.2.2/dtwSat/vignettes/applying_twdtw_files |only dtwSat-0.2.2/dtwSat/vignettes/jsslogo.jpg |only dtwSat-0.2.2/dtwSat/vignettes/references.bib | 92 ++- 113 files changed, 1579 insertions(+), 1264 deletions(-)
Title: Circular Drift-Diffusion Model
Description: Circular drift-diffusion model for continuous reports.
Author: Yi-Shin Lin [aut, cre],
Andrew Heathcote [aut],
Peter Kvam [aut]
Maintainer: Yi-Shin Lin <yishin.lin@utas.edu.au>
Diff between CircularDDM versions 0.0.7 dated 2017-03-30 and 0.0.8 dated 2017-03-31
DESCRIPTION | 16 +++++++++++----- MD5 | 6 +++--- NEWS | 4 ++++ README.md | 24 +++++++++++++----------- 4 files changed, 31 insertions(+), 19 deletions(-)
Title: Visualising Bipartite Networks and Calculating Some (Ecological)
Indices
Description: Functions to visualise webs and calculate a series of indices commonly used to describe pattern in (ecological) webs. It focuses on webs consisting of only two levels (bipartite), e.g. pollination webs or predator-prey-webs. Visualisation is important to get an idea of what we are actually looking at, while the indices summarise different aspects of the web's topology.
Author: Carsten F. Dormann, Jochen Fruend and Bernd Gruber, with additional code from Mariano Devoto, Jose Iriondo, Rouven Strauss and Diego Vazquez, also based on C-code developed by Nils Bluethgen, Aaron Clauset/Rouven Strauss and Miguel Rodriguez-Girones
Maintainer: Carsten F. Dormann <carsten.dormann@biom.uni-freiburg.de>
Diff between bipartite versions 2.07 dated 2016-11-08 and 2.08 dated 2017-03-31
DESCRIPTION | 9 MD5 | 32 +- NAMESPACE | 15 - R/NOS.R |only R/computeModules.R | 453 ++++++++++++++++++++++-------------------- R/grouplevel.R | 15 - R/metaComputeModules.R |only R/modulesLPA.R |only inst/doc/Dormann2008Rnews.pdf |binary man/NOS.Rd |only man/bipartite-package.Rd | 14 + man/clustering_tm.Rd | 7 man/computeModules.Rd | 40 ++- man/grouplevel.Rd | 320 ++++++++++++++--------------- man/moduleWeb-class.Rd | 2 man/modulesLPA.Rd |only man/second.extinct.Rd | 2 src/bmn5.cc | 3 src/identifyModules.cc | 14 - src/init.c |only 20 files changed, 492 insertions(+), 434 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015)
<http://arxiv.org/abs/1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient hash table.
Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>.
This material is based upon work supported by the National Science
Foundation under Grant DMS-1106891. Any opinions, findings, and
conclusions or recommendations expressed in this material are those of
the author(s) and do not necessarily reflect the views of the
National Science Foundation.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.4.4 dated 2017-03-14 and 1.4.5 dated 2017-03-31
DESCRIPTION | 6 +- MD5 | 17 +++--- NAMESPACE | 1 NEWS.md | 6 ++ R/interactions.R |only R/predict.bma.R | 19 ++++++- build/vignette.rds |binary inst/doc/BAS-vignette.html | 120 ++++++++++++++++++++++----------------------- man/predict.bma.Rd | 20 ++++++- src/Makevars | 1 10 files changed, 112 insertions(+), 78 deletions(-)
Title: A New Format for Lossless and Lossy Image Compression
Description: Lossless webp images are 26% smaller in size compared to PNG. Lossy
webp images are 25-34% smaller in size compared to JPEG. This package reads
and writes webp images into a 3 (rgb) or 4 (rgba) channel bitmap array using
conventions from the 'jpeg' and 'png' packages.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between webp versions 0.3 dated 2017-03-18 and 0.4 dated 2017-03-31
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ configure | 4 ++-- 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Embedded JavaScript Engine for R
Description: An R interface to Google's open source JavaScript engine.
V8 is written in C++ and implements ECMAScript as specified in ECMA-262,
5th edition. In addition, this package implements typed arrays as
specified in ECMA 6 used for high-performance computing and libraries
compiled with 'emscripten'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between V8 versions 1.3 dated 2017-03-18 and 1.4 dated 2017-03-31
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ configure | 4 ++-- 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Seasonal/Sequential (Instants/Durations, Even or not) Time
Series
Description: Objects to manipulate sequential and seasonal time series. Sequential time series based on time instants and time durations are handled. Both can be regularly or unevenly spaced (overlapping durations are allowed). Only POSIX* format are used for dates and times. The following classes are provided : 'POSIXcti', 'POSIXctp', 'TimeIntervalDataFrame', 'TimeInstantDataFrame', 'SubtimeDataFrame' ; methods to switch from a class to another and to modify the time support of series (hourly time series to daily time series for instance) are also defined. Tools provided can be used for instance to handle environmental monitoring data (not always produced on a regular time base).
Author: Vladislav Navel
Maintainer: Vladislav Navel <vnavel@yahoo.fr>
Diff between timetools versions 1.9.1 dated 2017-02-04 and 1.11.1 dated 2017-03-31
timetools-1.11.1/timetools/DESCRIPTION | 8 +-- timetools-1.11.1/timetools/MD5 | 23 ++++---- timetools-1.11.1/timetools/NAMESPACE | 3 + timetools-1.11.1/timetools/R/TimeInstantDataFrame.R | 16 +++++- timetools-1.11.1/timetools/R/TimeIntervalDataFrame.R | 19 ++++++- timetools-1.11.1/timetools/R/split.R | 4 - timetools-1.11.1/timetools/README | 10 +++ timetools-1.11.1/timetools/man/TimeInstantDataFrame-class.Rd | 26 +++++++--- timetools-1.11.1/timetools/man/TimeIntervalDataFrame-class.Rd | 26 ++++++++-- timetools-1.11.1/timetools/man/changeSupport.Rd | 4 - timetools-1.11.1/timetools/man/timetools-package.Rd | 4 - timetools-1.11.1/timetools/src/init.c |only timetools-1.11.1/timetools/src/timetools.h |only timetools-1.9.1/timetools/R/zzz.R |only 14 files changed, 108 insertions(+), 35 deletions(-)
Title: A Modern and Easy-to-Use Crypto Library
Description: Bindings to 'libsodium': a modern, easy-to-use software library for
encryption, decryption, signatures, password hashing and more. Sodium uses
curve25519, a state-of-the-art Diffie-Hellman function by Daniel Bernstein,
which has become very popular after it was discovered that the NSA had
backdoored Dual EC DRBG.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between sodium versions 1.0 dated 2017-03-18 and 1.1 dated 2017-03-31
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NEWS | 3 +++ configure | 4 ++-- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. It is designed as a generic yet powerful framework. The
architecture encloses a robust and fast simulation core written in C++ with
automatic monitoring capabilities. It provides a rich and flexible R API that
revolves around the concept of trajectory, a common path in the simulation
model for entities of the same type.
Author: Iñaki Ucar [aut, cph, cre],
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer versions 3.6.0 dated 2016-12-27 and 3.6.1 dated 2017-03-31
simmer-3.6.0/simmer/R/plot.R |only simmer-3.6.0/simmer/TODO |only simmer-3.6.0/simmer/man/Extract.Rd |only simmer-3.6.0/simmer/man/length.Rd |only simmer-3.6.0/simmer/man/plot_attributes.Rd |only simmer-3.6.0/simmer/man/plot_evolution_arrival_times.Rd |only simmer-3.6.0/simmer/man/plot_resource_usage.Rd |only simmer-3.6.0/simmer/man/plot_resource_utilization.Rd |only simmer-3.6.0/simmer/tests/testthat/test-plot.R |only simmer-3.6.1/simmer/DESCRIPTION | 23 - simmer-3.6.1/simmer/LICENSE | 4 simmer-3.6.1/simmer/MD5 | 181 +++++------- simmer-3.6.1/simmer/NAMESPACE | 10 simmer-3.6.1/simmer/NEWS.md | 12 simmer-3.6.1/simmer/R/generators.R | 78 +++-- simmer-3.6.1/simmer/R/schedule.R | 2 simmer-3.6.1/simmer/R/simmer.R |only simmer-3.6.1/simmer/R/simulator.R | 2 simmer-3.6.1/simmer/R/trajectory-methods.R | 40 +- simmer-3.6.1/simmer/R/trajectory.R | 80 +++-- simmer-3.6.1/simmer/R/utils.R | 29 - simmer-3.6.1/simmer/R/wrap-methods.R | 3 simmer-3.6.1/simmer/R/wrap.R | 2 simmer-3.6.1/simmer/build/vignette.rds |binary simmer-3.6.1/simmer/inst/doc/A-introduction.R | 4 simmer-3.6.1/simmer/inst/doc/A-introduction.Rmd | 11 simmer-3.6.1/simmer/inst/doc/A-introduction.html | 74 ++-- simmer-3.6.1/simmer/inst/doc/B-terminology.R | 4 simmer-3.6.1/simmer/inst/doc/B-terminology.Rmd | 4 simmer-3.6.1/simmer/inst/doc/B-terminology.html | 6 simmer-3.6.1/simmer/inst/doc/C-trajectories.R | 14 simmer-3.6.1/simmer/inst/doc/C-trajectories.Rmd | 14 simmer-3.6.1/simmer/inst/doc/C-trajectories.html | 62 +--- simmer-3.6.1/simmer/inst/doc/D-bank-1.R | 33 -- simmer-3.6.1/simmer/inst/doc/D-bank-1.Rmd | 36 +- simmer-3.6.1/simmer/inst/doc/D-bank-1.html | 63 +--- simmer-3.6.1/simmer/inst/doc/E-simpy.R | 42 +- simmer-3.6.1/simmer/inst/doc/E-simpy.Rmd | 50 +-- simmer-3.6.1/simmer/inst/doc/E-simpy.html | 73 ++-- simmer-3.6.1/simmer/inst/doc/F-queueing-systems.R | 47 +-- simmer-3.6.1/simmer/inst/doc/F-queueing-systems.Rmd | 49 +-- simmer-3.6.1/simmer/inst/doc/F-queueing-systems.html | 60 +-- simmer-3.6.1/simmer/inst/doc/G-ctmc.R | 45 +- simmer-3.6.1/simmer/inst/doc/G-ctmc.Rmd | 45 +- simmer-3.6.1/simmer/inst/doc/G-ctmc.html | 56 +-- simmer-3.6.1/simmer/man/Extract.trajectory.Rd |only simmer-3.6.1/simmer/man/activate.Rd | 1 simmer-3.6.1/simmer/man/add_generator.Rd | 1 simmer-3.6.1/simmer/man/add_resource.Rd | 1 simmer-3.6.1/simmer/man/at.Rd | 10 simmer-3.6.1/simmer/man/batch.Rd | 1 simmer-3.6.1/simmer/man/branch.Rd | 1 simmer-3.6.1/simmer/man/clone.Rd | 1 simmer-3.6.1/simmer/man/from.Rd | 10 simmer-3.6.1/simmer/man/from_to.Rd | 17 - simmer-3.6.1/simmer/man/get_capacity.Rd | 3 simmer-3.6.1/simmer/man/get_mon.Rd | 1 simmer-3.6.1/simmer/man/get_n_generated.Rd | 1 simmer-3.6.1/simmer/man/join.Rd | 1 simmer-3.6.1/simmer/man/leave.Rd | 1 simmer-3.6.1/simmer/man/length.trajectory.Rd |only simmer-3.6.1/simmer/man/log_.Rd | 1 simmer-3.6.1/simmer/man/now.Rd | 1 simmer-3.6.1/simmer/man/peek.Rd | 1 simmer-3.6.1/simmer/man/reexports.Rd | 6 simmer-3.6.1/simmer/man/renege_in.Rd | 5 simmer-3.6.1/simmer/man/reset.Rd | 1 simmer-3.6.1/simmer/man/rollback.Rd | 1 simmer-3.6.1/simmer/man/run.Rd | 3 simmer-3.6.1/simmer/man/schedule.Rd | 1 simmer-3.6.1/simmer/man/seize.Rd | 5 simmer-3.6.1/simmer/man/select.Rd | 1 simmer-3.6.1/simmer/man/send.Rd | 1 simmer-3.6.1/simmer/man/set_attribute.Rd | 1 simmer-3.6.1/simmer/man/set_capacity.Rd | 1 simmer-3.6.1/simmer/man/set_prioritization.Rd | 1 simmer-3.6.1/simmer/man/set_trajectory.Rd | 3 simmer-3.6.1/simmer/man/simmer.Rd | 30 + simmer-3.6.1/simmer/man/timeout.Rd | 1 simmer-3.6.1/simmer/man/to.Rd | 10 simmer-3.6.1/simmer/man/trajectory.Rd | 3 simmer-3.6.1/simmer/man/wrap.Rd | 4 simmer-3.6.1/simmer/src/Makevars | 2 simmer-3.6.1/simmer/src/activity.h | 72 ++-- simmer-3.6.1/simmer/src/init.c |only simmer-3.6.1/simmer/src/policy.cpp | 20 - simmer-3.6.1/simmer/src/process.cpp | 4 simmer-3.6.1/simmer/src/process.h | 4 simmer-3.6.1/simmer/src/simulator.h | 6 simmer-3.6.1/simmer/tests/testthat/test-convenience-funcs.R | 68 +++- simmer-3.6.1/simmer/tests/testthat/test-trajectory.R | 106 ++++++- simmer-3.6.1/simmer/vignettes/A-introduction.Rmd | 11 simmer-3.6.1/simmer/vignettes/B-terminology.Rmd | 4 simmer-3.6.1/simmer/vignettes/C-trajectories.Rmd | 14 simmer-3.6.1/simmer/vignettes/D-bank-1.Rmd | 36 +- simmer-3.6.1/simmer/vignettes/E-simpy.Rmd | 50 +-- simmer-3.6.1/simmer/vignettes/F-queueing-systems.Rmd | 49 +-- simmer-3.6.1/simmer/vignettes/G-ctmc.Rmd | 45 +- 98 files changed, 1014 insertions(+), 866 deletions(-)
Title: Plot Raster Map Tiles from Open Street Map and Other Sources
Description: Download and plot Open Street Map <http://www.openstreetmap.org/>,
Bing Maps <http://www.bing.com/maps> and other tiled map sources in a way
that works seamlessly with plotting from the 'sp' package. Use to create
high-resolution basemaps and add hillshade to vector-based maps.
Author: Dewey Dunnington [aut, cre],
Timothée Giraud [ctb]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between rosm versions 0.1.4 dated 2016-04-08 and 0.2 dated 2017-03-31
rosm-0.1.4/rosm/R/googlemaps.R |only rosm-0.1.4/rosm/R/osmtile.R |only rosm-0.1.4/rosm/man/osm.raster.Rd |only rosm-0.1.4/rosm/man/rosm-package.Rd |only rosm-0.2/rosm/DESCRIPTION | 21 +- rosm-0.2/rosm/MD5 | 54 +++--- rosm-0.2/rosm/NAMESPACE | 9 + rosm-0.2/rosm/R/0_tilespec.R |only rosm-0.2/rosm/R/1_tiles.R |only rosm-0.2/rosm/R/bingmaps.R | 114 +++++-------- rosm-0.2/rosm/R/commonplot.R | 3 rosm-0.2/rosm/R/extract.R |only rosm-0.2/rosm/R/osmplot.R | 219 ++++++++++++++++--------- rosm-0.2/rosm/R/osmraster.R | 199 +++++++++++++--------- rosm-0.2/rosm/R/overlays.R | 29 +++ rosm-0.2/rosm/R/projections.R | 47 +---- rosm-0.2/rosm/R/rosm-package.R |only rosm-0.2/rosm/R/tileurl.R | 262 ++++++++++-------------------- rosm-0.2/rosm/README.md | 127 +++++++++++++- rosm-0.2/rosm/inst |only rosm-0.2/rosm/man/as.tile_source.Rd |only rosm-0.2/rosm/man/extract_bbox.Rd |only rosm-0.2/rosm/man/osm.image.Rd |only rosm-0.2/rosm/man/osm.lines.Rd | 2 rosm-0.2/rosm/man/osm.plot.Rd | 18 +- rosm-0.2/rosm/man/osm.points.Rd | 3 rosm-0.2/rosm/man/osm.polygon.Rd | 2 rosm-0.2/rosm/man/osm.segments.Rd | 3 rosm-0.2/rosm/man/osm.text.Rd |only rosm-0.2/rosm/man/osm.types.Rd | 6 rosm-0.2/rosm/man/register_tile_source.Rd |only rosm-0.2/rosm/man/rosm.Rd |only rosm-0.2/rosm/tests/manual/tests.R | 227 +++++++++---------------- 33 files changed, 728 insertions(+), 617 deletions(-)
Title: Text Extraction and Rendering of PDF Documents
Description: Utilities based on 'libpoppler' for extracting text,
fonts, attachments and metadata from a pdf file. Also implements
rendering of PDF to bitmaps on supported platforms.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between pdftools versions 1.1 dated 2017-03-18 and 1.2 dated 2017-03-31
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NEWS | 3 +++ configure | 4 ++-- 4 files changed, 14 insertions(+), 10 deletions(-)
Title: Analysis of Multivariate Event Times
Description: Implementation of various statistical models for multivariate
event history data. Including multivariate cumulative incidence models, and
bivariate random effects probit models (Liability models). Also contains
two-stage binomial modelling that can do pairwise odds-ratio dependence
modelling based marginal logistic regression models. This is an alternative
to the alternating logistic regression approach (ALR).
Author: Klaus K. Holst and Thomas Scheike
Maintainer: Klaus K. Holst <klaus@holst.it>
Diff between mets versions 1.2.1 dated 2017-02-26 and 1.2.2 dated 2017-03-31
mets-1.2.1/mets/inst/doc/basic-dutils.html |only mets-1.2.1/mets/inst/doc/basic-dutils.org |only mets-1.2.1/mets/inst/doc/binomial-case-control-ascertainment.html |only mets-1.2.1/mets/inst/doc/binomial-case-control-ascertainment.org |only mets-1.2.1/mets/inst/doc/binomial-family.html |only mets-1.2.1/mets/inst/doc/binomial-family.org |only mets-1.2.1/mets/inst/doc/binomial-twin.html |only mets-1.2.1/mets/inst/doc/binomial-twin.org |only mets-1.2.1/mets/inst/doc/dutils.org |only mets-1.2.1/mets/inst/doc/header.org |only mets-1.2.1/mets/inst/doc/marg1.png |only mets-1.2.1/mets/inst/doc/orgmode5-ts.css |only mets-1.2.1/mets/inst/doc/quantitative-twin.html |only mets-1.2.1/mets/inst/doc/quantitative-twin.org |only mets-1.2.1/mets/inst/doc/scatter1.png |only mets-1.2.1/mets/inst/doc/scatter2.png |only mets-1.2.1/mets/man/printcasewisetest.Rd |only mets-1.2.2/mets/DESCRIPTION | 16 - mets-1.2.2/mets/MD5 | 81 +++--- mets-1.2.2/mets/NAMESPACE | 2 mets-1.2.2/mets/NEWS | 4 mets-1.2.2/mets/R/binomial.twostage.R | 8 mets-1.2.2/mets/R/biprobit.R | 55 +++- mets-1.2.2/mets/R/casewise.R | 28 -- mets-1.2.2/mets/R/daggregate.R | 3 mets-1.2.2/mets/R/dutils.R | 134 ++++++++-- mets-1.2.2/mets/R/normal0.R | 4 mets-1.2.2/mets/R/twinlm.R | 28 +- mets-1.2.2/mets/R/twostage.R | 40 +- mets-1.2.2/mets/build |only mets-1.2.2/mets/inst/doc/basic-dutils.ltx |only mets-1.2.2/mets/inst/doc/basic-dutils.pdf |only mets-1.2.2/mets/inst/doc/binomial-case-control-ascertainment.ltx |only mets-1.2.2/mets/inst/doc/binomial-case-control-ascertainment.pdf |only mets-1.2.2/mets/inst/doc/binomial-family.ltx |only mets-1.2.2/mets/inst/doc/binomial-family.pdf |only mets-1.2.2/mets/inst/doc/binomial-twin.ltx |only mets-1.2.2/mets/inst/doc/binomial-twin.pdf |only mets-1.2.2/mets/inst/doc/quantitative-twin.ltx |only mets-1.2.2/mets/inst/doc/quantitative-twin.pdf |only mets-1.2.2/mets/inst/documentation |only mets-1.2.2/mets/man/dcor.Rd | 4 mets-1.2.2/mets/man/print.casewise.Rd |only mets-1.2.2/mets/man/twinlm.Rd | 8 mets-1.2.2/mets/src/aalenfrailty.cpp | 4 mets-1.2.2/mets/src/cor.cpp | 4 mets-1.2.2/mets/src/fastcox.cpp | 4 mets-1.2.2/mets/src/init.c | 7 mets-1.2.2/mets/src/survival-twostage.cpp | 2 mets-1.2.2/mets/vignettes |only 50 files changed, 299 insertions(+), 137 deletions(-)