Title: Fast Searches for Interactions
Description: Performs fast detection of interactions in large-scale data using the
method of random intersection trees introduced in
Shah, R. D. and Meinshausen, N. (2014) <http://www.jmlr.org/papers/v15/shah14a.html>.
The algorithm finds potentially high-order interactions in high-dimensional binary
two-class classification data, without requiring lower order interactions
to be informative. The search is particularly fast when the matrices of
predictors are sparse. It can also be used to perform market basket analysis
when supplied with a single binary data matrix. Here it will find collections
of columns which for many rows contain all 1's.
Author: Hyun Jik Kim, Rajen D. Shah
Maintainer: Rajen D. Shah <r.shah@statslab.cam.ac.uk>
Diff between FSInteract versions 0.1.1 dated 2015-05-14 and 0.1.2 dated 2017-04-03
DESCRIPTION | 15 ++++++++------- MD5 | 11 ++++++----- NAMESPACE | 3 ++- R/RcppExports.R | 2 +- man/RIT.Rd | 8 +++++--- src/FSInteract_init.c |only src/RcppExports.cpp | 18 +++++++++--------- 7 files changed, 31 insertions(+), 26 deletions(-)
Title: Genomic Simulation of Purebred and Crossbred Populations
Description: Simulation of purebred and crossbred genomic data as well as pedigree and phenotypes are possible by this package. 'xbreed' can be used for the simulation of populations with flexible genome structures and trait genetic architectures. It can also be used to evaluate breeding schemes and generate genetic data to test statistical tools.
Author: Hadi Esfandyari [aut, cre],
Anders Christian Sørensen [aut]
Maintainer: Hadi Esfandyari <esfandyari.hadi@gmail.com>
Diff between xbreed versions 1.0.0 dated 2017-03-31 and 1.0.1 dated 2017-04-03
DESCRIPTION | 6 +++--- MD5 | 16 +++++++++++----- R/make_hp_v4_Commented.R | 2 +- inst/doc/xbreedvignette.Rmd | 13 +++++++------ inst/doc/xbreedvignette.pdf |binary vignettes/LD.png |only vignettes/distr.png |only vignettes/fourway.png |only vignettes/threeway.png |only vignettes/twoway.png |only vignettes/workflow2.png |only vignettes/xbreedvignette.Rmd | 13 +++++++------ 12 files changed, 29 insertions(+), 21 deletions(-)
Title: Gradient and Vesselness Tools for Arrays and NIfTI Images
Description: Simple functions for calculating the image gradient, image hessian, volume ratio filter, and Frangi vesselness filter of 3-dimensional volumes.
Author: Jordan D. Dworkin [aut, cre]
Maintainer: Jordan D. Dworkin <jdwor@mail.med.upenn.edu>
Diff between vesselr versions 0.2.0 dated 2017-03-28 and 0.2.1 dated 2017-04-03
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/blobness3D.R | 9 ++++++--- R/gradient3D.R | 2 +- R/hessian3D.R | 15 +++++++++------ R/vesselness3D.R | 8 +++++--- man/blobness3D.Rd | 8 ++++++-- man/gradient3D.Rd | 2 +- man/hessian3D.Rd | 5 ++++- man/vesselness3D.Rd | 8 ++++++-- 10 files changed, 50 insertions(+), 31 deletions(-)
Title: Quantitative Analysis Made Accessible
Description: Contains a number of functions that serve
two goals. First, to make R more accessible to people migrating from
SPSS by adding a number of functions that behave roughly like their
SPSS equivalents. Second, to make a number of slightly more
advanced functions more user friendly to relatively novice users. The
package also conveniently houses a number of additional functions that
are intended to increase the quality of methodology and statistics in
psychology, not by offering technical solutions, but by shifting
perspectives, for example towards reasoning based on sampling
distributions as opposed to on point estimates.
Author: Gjalt-Jorn Peters
Maintainer: Gjalt-Jorn Peters <gjalt-jorn@userfriendlyscience.com>
Diff between userfriendlyscience versions 0.5-2 dated 2016-12-16 and 0.6-0 dated 2017-04-03
userfriendlyscience-0.5-2/userfriendlyscience/man/pwr.cohensdCI.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/DESCRIPTION | 15 userfriendlyscience-0.6-0/userfriendlyscience/MD5 | 117 +++++-- userfriendlyscience-0.6-0/userfriendlyscience/NAMESPACE | 24 + userfriendlyscience-0.6-0/userfriendlyscience/NEWS | 154 +++++----- userfriendlyscience-0.6-0/userfriendlyscience/R/CIBER.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/associationsDiamondPlot.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/associationsToDiamondPlotDf.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/biAxisDiamondPlot.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/cohensdCI.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/cohensdDist.R | 18 - userfriendlyscience-0.6-0/userfriendlyscience/R/confIntR.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/convert.R | 19 - userfriendlyscience-0.6-0/userfriendlyscience/R/convert.d.to.eer.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/convert.d.to.nnc.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/convert.threshold.to.er.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/curfnfinder.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/descr.R | 5 userfriendlyscience-0.6-0/userfriendlyscience/R/detStructAddVarLabels.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/detStructAddVarNames.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/detStructCIBER.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/detStructComputeProducts.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/detStructComputeScales.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/determinantStructure.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/diamondPlot.R | 41 +- userfriendlyscience-0.6-0/userfriendlyscience/R/erDataSeq.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/escapeRegex_(from_Hmisc).R |only userfriendlyscience-0.6-0/userfriendlyscience/R/examine.R | 35 +- userfriendlyscience-0.6-0/userfriendlyscience/R/formatCI.R | 4 userfriendlyscience-0.6-0/userfriendlyscience/R/freq.R | 4 userfriendlyscience-0.6-0/userfriendlyscience/R/ggDiamondLayer.R | 11 userfriendlyscience-0.6-0/userfriendlyscience/R/ggNNC.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/ggqq.R | 42 ++ userfriendlyscience-0.6-0/userfriendlyscience/R/importLimeSurveyData.R | 43 ++ userfriendlyscience-0.6-0/userfriendlyscience/R/makeScales.R | 17 - userfriendlyscience-0.6-0/userfriendlyscience/R/meansDiamondPlot.R | 84 ++--- userfriendlyscience-0.6-0/userfriendlyscience/R/nnc.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/powerHist.R | 6 userfriendlyscience-0.6-0/userfriendlyscience/R/prob.randomizationSuccess.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/processLSvarLabels.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/pwr.cohensdCI.R | 17 - userfriendlyscience-0.6-0/userfriendlyscience/R/pwr.confIntR.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/pwr.omegasq.R | 4 userfriendlyscience-0.6-0/userfriendlyscience/R/pwr.randomizationSuccess.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/rawDataDiamondLayer.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/setCaptionNumbering.R |only userfriendlyscience-0.6-0/userfriendlyscience/R/setFigCapNumbering.R | 17 - userfriendlyscience-0.6-0/userfriendlyscience/R/setTabCapNumbering.R | 23 - userfriendlyscience-0.6-0/userfriendlyscience/R/varsToDiamondPlotDf.R |only userfriendlyscience-0.6-0/userfriendlyscience/README.md | 24 + userfriendlyscience-0.6-0/userfriendlyscience/man/CIBER.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/associationsDiamondPlot.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/basicSPSStranslationFunctions.Rd | 6 userfriendlyscience-0.6-0/userfriendlyscience/man/biAxisDiamondPlot.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/cohensdDist.Rd | 64 +++- userfriendlyscience-0.6-0/userfriendlyscience/man/confIntR.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/convert.Rd | 15 userfriendlyscience-0.6-0/userfriendlyscience/man/convert.d.to.nnc.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/curfnfinder.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/descr.Rd | 4 userfriendlyscience-0.6-0/userfriendlyscience/man/determinantStructure.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/determinantStructurePreprocessing.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/diamondPlot.Rd | 14 userfriendlyscience-0.6-0/userfriendlyscience/man/escapeRegex.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/freq.Rd | 2 userfriendlyscience-0.6-0/userfriendlyscience/man/ggDiamondLayer.Rd | 56 +++ userfriendlyscience-0.6-0/userfriendlyscience/man/ggNNC.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/ggqq.Rd | 20 - userfriendlyscience-0.6-0/userfriendlyscience/man/importLimeSurveyData.Rd | 7 userfriendlyscience-0.6-0/userfriendlyscience/man/meansDiamondPlot.Rd | 27 + userfriendlyscience-0.6-0/userfriendlyscience/man/nnc.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/powerHist.Rd | 7 userfriendlyscience-0.6-0/userfriendlyscience/man/printMethods.Rd | 8 userfriendlyscience-0.6-0/userfriendlyscience/man/processLSvarLabels.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/pwr.confIntR.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/pwr.omegasq.Rd | 2 userfriendlyscience-0.6-0/userfriendlyscience/man/randomizationSuccess.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/scaleInspection.Rd | 9 userfriendlyscience-0.6-0/userfriendlyscience/man/scaleStructure.Rd | 16 - userfriendlyscience-0.6-0/userfriendlyscience/man/setCaptionNumbering.Rd |only userfriendlyscience-0.6-0/userfriendlyscience/man/userfriendlyscience-package.Rd | 18 - 81 files changed, 666 insertions(+), 333 deletions(-)
More information about userfriendlyscience at CRAN
Permanent link
Title: Unsupervised Photometric Membership Assignment in Stellar
Clusters
Description: An implementation of the UPMASK method for performing membership
assignment in stellar clusters in R. It is prepared to use photometry and
spatial positions, but it can take into account other types of data. The
method is able to take into account arbitrary error models, and it is
unsupervised, data-driven, physical-model-free and relies on as few
assumptions as possible. The approach followed for membership assessment is
based on an iterative process, principal component analysis, a clustering
algorithm and a kernel density estimation.
Author: Alberto Krone-Martins, Andre Moitinho
Maintainer: Alberto Krone-Martins <algol@sim.ul.pt>
Diff between UPMASK versions 1.0 dated 2014-09-16 and 1.1 dated 2017-04-03
ChangeLog |only DESCRIPTION | 8 ++++---- MD5 | 5 +++-- NAMESPACE | 5 +++-- 4 files changed, 10 insertions(+), 8 deletions(-)
Title: Tidy Quantitative Financial Analysis
Description: Bringing financial analysis to the 'tidyverse'. The 'tidyquant'
package provides a convenient wrapper to various 'xts', 'zoo', 'quantmod', 'TTR'
and 'PerformanceAnalytics' package
functions and returns the objects in the tidy 'tibble' format. The main
advantage is being able to use quantitative functions with the 'tidyverse'
functions including 'purrr', 'dplyr', 'tidyr', 'ggplot2', 'lubridate', etc. See
the 'tidyquant' website for more information, documentation and examples.
Author: Matt Dancho [aut, cre],
Davis Vaughan [aut]
Maintainer: Matt Dancho <mdancho@business-science.io>
Diff between tidyquant versions 0.4.0 dated 2017-03-03 and 0.5.0 dated 2017-04-03
tidyquant-0.4.0/tidyquant/inst/doc/TQ03-scaling-analysis-with-tidyquant.R |only tidyquant-0.4.0/tidyquant/inst/doc/TQ03-scaling-analysis-with-tidyquant.Rmd |only tidyquant-0.4.0/tidyquant/inst/doc/TQ03-scaling-analysis-with-tidyquant.html |only tidyquant-0.5.0/tidyquant/DESCRIPTION | 22 tidyquant-0.5.0/tidyquant/MD5 | 90 +- tidyquant-0.5.0/tidyquant/NAMESPACE | 6 tidyquant-0.5.0/tidyquant/NEWS.md | 20 tidyquant-0.5.0/tidyquant/R/deprecated.R | 21 tidyquant-0.5.0/tidyquant/R/global_vars.R | 1 tidyquant-0.5.0/tidyquant/R/quandl.R |only tidyquant-0.5.0/tidyquant/R/tidyquant.R | 3 tidyquant-0.5.0/tidyquant/R/tq_get.R | 265 ++++++-- tidyquant-0.5.0/tidyquant/R/tq_mutate.R | 109 ++- tidyquant-0.5.0/tidyquant/R/tq_performance.R | 4 tidyquant-0.5.0/tidyquant/R/tq_portfolio.R | 11 tidyquant-0.5.0/tidyquant/R/tq_transmute.R | 142 ++-- tidyquant-0.5.0/tidyquant/README.md | 26 tidyquant-0.5.0/tidyquant/build/vignette.rds |binary tidyquant-0.5.0/tidyquant/inst/doc/TQ00-introduction-to-tidyquant.html | 4 tidyquant-0.5.0/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.R | 78 ++ tidyquant-0.5.0/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.Rmd | 181 ++++- tidyquant-0.5.0/tidyquant/inst/doc/TQ01-core-functions-in-tidyquant.html | 311 +++++++--- tidyquant-0.5.0/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.R | 96 ++- tidyquant-0.5.0/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.Rmd | 142 +++- tidyquant-0.5.0/tidyquant/inst/doc/TQ02-quant-integrations-in-tidyquant.html | 172 ++++- tidyquant-0.5.0/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.R | 4 tidyquant-0.5.0/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.Rmd | 5 tidyquant-0.5.0/tidyquant/inst/doc/TQ03-scaling-and-modeling-with-tidyquant.html | 56 - tidyquant-0.5.0/tidyquant/inst/doc/TQ04-charting-with-tidyquant.html | 4 tidyquant-0.5.0/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.R | 20 tidyquant-0.5.0/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.Rmd | 20 tidyquant-0.5.0/tidyquant/inst/doc/TQ05-performance-analysis-with-tidyquant.html | 122 +-- tidyquant-0.5.0/tidyquant/man/deprecated.Rd | 23 tidyquant-0.5.0/tidyquant/man/quandl_api_key.Rd |only tidyquant-0.5.0/tidyquant/man/quandl_search.Rd |only tidyquant-0.5.0/tidyquant/man/tidyquant.Rd | 2 tidyquant-0.5.0/tidyquant/man/tq_get.Rd | 51 + tidyquant-0.5.0/tidyquant/man/tq_mutate.Rd | 86 +- tidyquant-0.5.0/tidyquant/man/tq_performance.Rd | 4 tidyquant-0.5.0/tidyquant/man/tq_portfolio.Rd | 2 tidyquant-0.5.0/tidyquant/tests/testthat/test_tq_mutate.R | 62 + tidyquant-0.5.0/tidyquant/tests/testthat/test_tq_performance.R | 4 tidyquant-0.5.0/tidyquant/tests/testthat/test_tq_portfolio.R | 22 tidyquant-0.5.0/tidyquant/tests/testthat/test_tq_transmute.R | 47 + tidyquant-0.5.0/tidyquant/vignettes/TQ00-introduction-to-tidyquant.Rmd | 8 tidyquant-0.5.0/tidyquant/vignettes/TQ01-core-functions-in-tidyquant.Rmd | 181 ++++- tidyquant-0.5.0/tidyquant/vignettes/TQ02-quant-integrations-in-tidyquant.Rmd | 175 ++++- tidyquant-0.5.0/tidyquant/vignettes/TQ03-scaling-and-modeling-with-tidyquant.Rmd | 5 tidyquant-0.5.0/tidyquant/vignettes/TQ05-performance-analysis-with-tidyquant.Rmd | 20 49 files changed, 1886 insertions(+), 741 deletions(-)
Title: R Simple Image Mosaic Creation Library
Description: Provides a way to transform an image into a mosaic composed from a set of smaller images (tiles). It also contains a simple function for creating the tiles from a folder of images directly through R, without the need of any external code. At this moment only the JPEG format is supported, either as input (image and tiles) or output (mosaic transformed image).
Author: Alberto Krone-Martins
Maintainer: Alberto Krone-Martins <algol@sim.ul.pt>
Diff between RsimMosaic versions 1.0.2 dated 2014-08-23 and 1.0.3 dated 2017-04-03
ChangeLog | 8 ++++++++ DESCRIPTION | 12 ++++++------ MD5 | 8 +++++--- NAMESPACE | 2 ++ R/composeMosaicFromImageRandomOptim.R |only man/composeMosaicFromImageRandomOptim.Rd |only 6 files changed, 21 insertions(+), 9 deletions(-)
Title: R Cross Entropy Inspired Method for Optimization
Description: An implementation of a stochastic heuristic method for performing multidimensional function optimization. The method is inspired in the Cross-Entropy Method. It does not relies on derivatives, neither imposes particularly strong requirements into the function to be optimized. Additionally, it takes profit from multi-core processing to enable optimization of time-consuming functions.
Author: Alberto Krone-Martins
Maintainer: Alberto Krone-Martins <algol@sim.ul.pt>
Diff between RCEIM versions 0.2 dated 2014-09-01 and 0.3 dated 2017-04-03
ChangeLog | 6 ++++++ DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 3 +++ man/RCEIM-package.Rd | 8 ++++---- man/sortDataFrame.Rd | 4 ++-- 6 files changed, 26 insertions(+), 17 deletions(-)
Title: Practical Numerical Math Functions
Description:
Provides a large number of functions from numerical analysis and
linear algebra, numerical optimization, differential equations,
time series, plus some well-known special mathematical functions.
Uses 'MATLAB' function names where appropriate to simplify porting.
Author: Hans Werner Borchers [aut, cre]
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between pracma versions 1.9.9 dated 2017-01-10 and 2.0.4 dated 2017-04-03
pracma-1.9.9/pracma/R/hooke_jeeves.R |only pracma-1.9.9/pracma/R/nelder_mead.R |only pracma-1.9.9/pracma/man/hooke_jeeves.Rd |only pracma-1.9.9/pracma/man/nelder_mead.Rd |only pracma-2.0.4/pracma/DESCRIPTION | 12 +++++------ pracma-2.0.4/pracma/MD5 | 30 +++++++++++++++------------- pracma-2.0.4/pracma/NEWS | 28 ++++++++++++++++++++++++++ pracma-2.0.4/pracma/R/anms.R |only pracma-2.0.4/pracma/R/fminsearch.R | 2 - pracma-2.0.4/pracma/R/gammainc.R | 34 ++++++++++++++++++++++++++++++++ pracma-2.0.4/pracma/R/hessenberg.R |only pracma-2.0.4/pracma/R/hurst.R | 2 - pracma-2.0.4/pracma/R/isposdef.R |only pracma-2.0.4/pracma/R/modular.R | 5 +--- pracma-2.0.4/pracma/data/brown72.rda |binary pracma-2.0.4/pracma/data/nile.rda |binary pracma-2.0.4/pracma/data/titanium.rda |binary pracma-2.0.4/pracma/man/anms.Rd |only pracma-2.0.4/pracma/man/gammainc.Rd | 33 ++++++++++++++++++++----------- pracma-2.0.4/pracma/man/hessenberg.Rd |only pracma-2.0.4/pracma/man/isposdef.Rd |only 21 files changed, 110 insertions(+), 36 deletions(-)
Title: Phylogenetic Analysis in R
Description: Phylogenetic analysis in R: Estimation of phylogenetic
trees and networks using Maximum Likelihood, Maximum Parsimony,
distance methods and Hadamard conjugation.
Author: Klaus Schliep [aut, cre],
Emmanuel Paradis [aut],
Leonardo de Oliveira Martins [aut],
Alastair Potts [aut],
Tim W. White [aut],
Cyrill Stachniss [ctb],
Michelle Kendall [ctb]
Maintainer: Klaus Schliep <klaus.schliep@gmail.com>
Diff between phangorn versions 2.1.1 dated 2016-12-04 and 2.2.0 dated 2017-04-03
phangorn-2.1.1/phangorn/man/plot.networx.Rd |only phangorn-2.2.0/phangorn/DESCRIPTION | 15 phangorn-2.2.0/phangorn/MD5 | 239 - phangorn-2.2.0/phangorn/NAMESPACE | 26 phangorn-2.2.0/phangorn/NEWS | 21 phangorn-2.2.0/phangorn/R/Coalescent.R | 26 phangorn-2.2.0/phangorn/R/Densi.R | 50 phangorn-2.2.0/phangorn/R/RcppExports.R | 8 phangorn-2.2.0/phangorn/R/SH.R | 38 phangorn-2.2.0/phangorn/R/SOWH.R | 49 phangorn-2.2.0/phangorn/R/ancestral_pml.R | 83 phangorn-2.2.0/phangorn/R/bootstrap.R | 138 phangorn-2.2.0/phangorn/R/cladePar.R | 27 phangorn-2.2.0/phangorn/R/clanistic.R | 129 phangorn-2.2.0/phangorn/R/delta.score.R |only phangorn-2.2.0/phangorn/R/dist.p.R | 69 phangorn-2.2.0/phangorn/R/distSeq.R | 187 + phangorn-2.2.0/phangorn/R/distTree.R | 117 phangorn-2.2.0/phangorn/R/fitch.R | 270 + phangorn-2.2.0/phangorn/R/hadamard.R | 127 phangorn-2.2.0/phangorn/R/lento.R |only phangorn-2.2.0/phangorn/R/modelTest.R | 67 phangorn-2.2.0/phangorn/R/neighborNet.R | 475 +++ phangorn-2.2.0/phangorn/R/networx.R | 1333 ++------- phangorn-2.2.0/phangorn/R/parsimony.R | 158 + phangorn-2.2.0/phangorn/R/phangorn-package.R |only phangorn-2.2.0/phangorn/R/phyDat.R | 245 + phangorn-2.2.0/phangorn/R/phylo.R | 1447 +--------- phangorn-2.2.0/phangorn/R/pmlMix.R |only phangorn-2.2.0/phangorn/R/pmlPart.R |only phangorn-2.2.0/phangorn/R/read.nexus.splits.R |only phangorn-2.2.0/phangorn/R/simSeq.R | 88 phangorn-2.2.0/phangorn/R/splits.R |only phangorn-2.2.0/phangorn/R/superTree.R | 46 phangorn-2.2.0/phangorn/R/treeManipulation.R | 168 + phangorn-2.2.0/phangorn/R/treedist.R | 273 + phangorn-2.2.0/phangorn/README.md | 4 phangorn-2.2.0/phangorn/build/vignette.rds |binary phangorn-2.2.0/phangorn/inst/doc/Ancestral.R | 19 phangorn-2.2.0/phangorn/inst/doc/Ancestral.Rnw | 9 phangorn-2.2.0/phangorn/inst/doc/Ancestral.pdf |binary phangorn-2.2.0/phangorn/inst/doc/IntertwiningTreesAndNetworks.R | 105 phangorn-2.2.0/phangorn/inst/doc/IntertwiningTreesAndNetworks.Rmd | 144 phangorn-2.2.0/phangorn/inst/doc/IntertwiningTreesAndNetworks.html | 147 - phangorn-2.2.0/phangorn/inst/doc/Networx.html | 14 phangorn-2.2.0/phangorn/inst/doc/Trees.R | 4 phangorn-2.2.0/phangorn/inst/doc/Trees.Rnw | 4 phangorn-2.2.0/phangorn/inst/doc/Trees.pdf |binary phangorn-2.2.0/phangorn/inst/doc/phangorn-specials.R | 9 phangorn-2.2.0/phangorn/inst/doc/phangorn-specials.Rnw | 3 phangorn-2.2.0/phangorn/inst/doc/phangorn-specials.pdf |binary phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bestTree.3moles |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bestTree.AIs |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bestTree.Wang.out |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bestTree.YCh |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bestTree.mtG |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bipartitions.3moles |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bipartitions.AIs |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bipartitions.YCh |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bipartitions.mtG |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bipartitionsBranchLabels.3moles |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bipartitionsBranchLabels.AIs |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bipartitionsBranchLabels.YCh |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bipartitionsBranchLabels.mtG |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bootstrap.3moles |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bootstrap.AIs |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bootstrap.Wang.out |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bootstrap.YCh |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_bootstrap.mtG |only phangorn-2.2.0/phangorn/inst/extdata/trees/RAxML_distances.Wang.nxs |only phangorn-2.2.0/phangorn/inst/extdata/trees/Splits.txt |only phangorn-2.2.0/phangorn/inst/extdata/trees/primates.dna |only phangorn-2.2.0/phangorn/man/Ancestors.Rd | 61 phangorn-2.2.0/phangorn/man/CI.Rd |only phangorn-2.2.0/phangorn/man/Laurasiatherian.Rd | 38 phangorn-2.2.0/phangorn/man/NJ.Rd | 58 phangorn-2.2.0/phangorn/man/SH.test.Rd | 49 phangorn-2.2.0/phangorn/man/SOWH.test.Rd | 72 phangorn-2.2.0/phangorn/man/addConfidences.Rd | 81 phangorn-2.2.0/phangorn/man/allTrees.Rd | 38 phangorn-2.2.0/phangorn/man/ancestral.pml.Rd | 106 phangorn-2.2.0/phangorn/man/as.networx.Rd |only phangorn-2.2.0/phangorn/man/as.splits.Rd | 151 - phangorn-2.2.0/phangorn/man/bab.Rd | 88 phangorn-2.2.0/phangorn/man/bootstrap.pml.Rd | 152 - phangorn-2.2.0/phangorn/man/chloroplast.Rd | 35 phangorn-2.2.0/phangorn/man/cladePar.Rd | 79 phangorn-2.2.0/phangorn/man/coalSpeciesTree.Rd |only phangorn-2.2.0/phangorn/man/consensusNet.Rd | 65 phangorn-2.2.0/phangorn/man/cophenetic.networx.Rd | 25 phangorn-2.2.0/phangorn/man/delta.score.Rd | 69 phangorn-2.2.0/phangorn/man/densiTree.Rd | 105 phangorn-2.2.0/phangorn/man/designTree.Rd | 86 phangorn-2.2.0/phangorn/man/dfactorial.Rd | 41 phangorn-2.2.0/phangorn/man/dist.hamming.Rd | 96 phangorn-2.2.0/phangorn/man/dist.p.Rd | 99 phangorn-2.2.0/phangorn/man/distanceHadamard.Rd | 46 phangorn-2.2.0/phangorn/man/getClans.Rd | 196 - phangorn-2.2.0/phangorn/man/hadamard.Rd | 92 phangorn-2.2.0/phangorn/man/lento.Rd | 77 phangorn-2.2.0/phangorn/man/maxCladeCred.Rd | 68 phangorn-2.2.0/phangorn/man/midpoint.Rd | 74 phangorn-2.2.0/phangorn/man/modelTest.Rd | 109 phangorn-2.2.0/phangorn/man/neighborNet.Rd | 55 phangorn-2.2.0/phangorn/man/nni.Rd | 54 phangorn-2.2.0/phangorn/man/parsimony.Rd | 133 phangorn-2.2.0/phangorn/man/phangorn-package.Rd | 55 phangorn-2.2.0/phangorn/man/phyDat.Rd | 235 + phangorn-2.2.0/phangorn/man/pml.Rd | 288 + phangorn-2.2.0/phangorn/man/pml.fit.Rd | 131 phangorn-2.2.0/phangorn/man/pmlCluster.Rd | 102 phangorn-2.2.0/phangorn/man/pmlMix.Rd | 80 phangorn-2.2.0/phangorn/man/pmlPart.Rd | 102 phangorn-2.2.0/phangorn/man/read.aa.Rd | 67 phangorn-2.2.0/phangorn/man/read.nexus.splits.Rd |only phangorn-2.2.0/phangorn/man/simSeq.Rd | 82 phangorn-2.2.0/phangorn/man/splitsNetwork.Rd | 80 phangorn-2.2.0/phangorn/man/superTree.Rd | 96 phangorn-2.2.0/phangorn/man/treedist.Rd | 159 - phangorn-2.2.0/phangorn/man/upgma.Rd | 73 phangorn-2.2.0/phangorn/man/writeDist.Rd |only phangorn-2.2.0/phangorn/man/yeast.Rd | 40 phangorn-2.2.0/phangorn/src/RcppExports.cpp | 24 phangorn-2.2.0/phangorn/src/dist.c | 2 phangorn-2.2.0/phangorn/src/fitch.c | 99 phangorn-2.2.0/phangorn/src/ml.c | 173 + phangorn-2.2.0/phangorn/src/phangorn.c | 10 phangorn-2.2.0/phangorn/src/phangorn_help.cpp | 54 phangorn-2.2.0/phangorn/src/registerDynamicSymbol.c |only phangorn-2.2.0/phangorn/src/sankoff.c | 2 phangorn-2.2.0/phangorn/src/sprdist.c | 54 phangorn-2.2.0/phangorn/tests/testthat/test_pmlPart.R |only phangorn-2.2.0/phangorn/tests/testthat/test_treeManipulation.R | 7 phangorn-2.2.0/phangorn/vignettes/Ancestral.Rnw | 9 phangorn-2.2.0/phangorn/vignettes/IntertwiningTreesAndNetworks.Rmd | 144 phangorn-2.2.0/phangorn/vignettes/Trees.Rnw | 4 phangorn-2.2.0/phangorn/vignettes/cophylo.png |only phangorn-2.2.0/phangorn/vignettes/phangorn-specials.Rnw | 3 phangorn-2.2.0/phangorn/vignettes/phangorn.bib | 44 139 files changed, 6489 insertions(+), 4609 deletions(-)
Title: Plot a Correlogram
Description: Calculates correlation of variables and displays the results
graphically. Included panel functions can display points, shading, ellipses, and
correlation values with confidence intervals.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between corrgram versions 1.10 dated 2016-11-09 and 1.11 dated 2017-04-03
corrgram-1.10/corrgram/R/corrgram.r |only corrgram-1.10/corrgram/tests/friendly.R |only corrgram-1.10/corrgram/tests/misc.R |only corrgram-1.10/corrgram/tests/shade.R |only corrgram-1.10/corrgram/tests/spearman.R |only corrgram-1.11/corrgram/DESCRIPTION | 12 corrgram-1.11/corrgram/MD5 | 29 - corrgram-1.11/corrgram/R/corrgram.R |only corrgram-1.11/corrgram/build/vignette.rds |binary corrgram-1.11/corrgram/inst/doc/corrgram_examples.Rmd | 3 corrgram-1.11/corrgram/inst/doc/corrgram_examples.html | 266 +++++++---------- corrgram-1.11/corrgram/man/auto.Rd | 1 corrgram-1.11/corrgram/man/baseball.Rd | 1 corrgram-1.11/corrgram/man/corrgram.Rd | 56 ++- corrgram-1.11/corrgram/man/vote.Rd | 1 corrgram-1.11/corrgram/tests/testthat/test_misc.R | 202 +++++++++++- corrgram-1.11/corrgram/tests/testthat/test_order.R |only corrgram-1.11/corrgram/tests/testthat/test_outer.R |only corrgram-1.11/corrgram/tests/testthat/test_spearman.R |only corrgram-1.11/corrgram/vignettes/corrgram_examples.Rmd | 3 20 files changed, 356 insertions(+), 218 deletions(-)
Title: Classification Based on Association Rules
Description: Provides a function to build an association rule-based classifier for data frames, and to classify incoming data frames using such a classifier.
Author: Ian Johnson [aut, cre, cph], Michael Hahsler [ctb]
Maintainer: Ian Johnson <ianjjohnson@icloud.com>
Diff between arulesCBA versions 1.1.0 dated 2017-03-15 and 1.1.1 dated 2017-04-03
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NAMESPACE | 2 +- inst/doc/arulesCBA.pdf |binary man/bCBA.Rd |only src/cba.c | 34 +++++++++++++++++++++++++++++----- 6 files changed, 38 insertions(+), 13 deletions(-)
Title: The 'xyz' Algorithm for Fast Interaction Search in
High-Dimensional Data
Description: High dimensional interaction search by brute force requires a
quadratic computational cost in the number of variables. The xyz algorithm provably finds strong interactions in almost linear time.
For details of the algorithm see: G. Thanei, N. Meinshausen and R. Shah (2016). The xyz algorithm for fast interaction search in high-dimensional data <https://arxiv.org/pdf/1610.05108v1.pdf>.
Author: Gian-Andrea Thanei
Maintainer: Gian-Andrea Thanei <thanei@stat.math.ethz.ch>
Diff between xyz versions 0.1 dated 2016-11-04 and 0.2 dated 2017-04-03
DESCRIPTION | 8 MD5 | 27 +- NAMESPACE | 30 +-- R/regression.R | 17 + R/search.R | 2 README.md | 2 build/vignette.rds |binary inst/doc/xyz-vignette.R | 66 +++--- inst/doc/xyz-vignette.html | 439 +++++++++++++++++++++++---------------------- man/xyz.Rd | 38 +-- man/xyz_regression.Rd | 97 ++++----- man/xyz_search.Rd | 85 ++++---- src/core.cpp | 20 +- src/xyz_init.c |only vignettes/core.cpp | 20 +- 15 files changed, 446 insertions(+), 405 deletions(-)
Title: Estimate Size at Sexual Maturity
Description: Contains functions to estimate morphometric and gonadal size at sexual maturity for organisms, usually fish and invertebrates. It includes methods for classification based on relative growth (using principal components analysis, hierarchical clustering, discriminant analysis), logistic regression (Frequentist or Bayes), parameters estimation and some basic plots.
Author: Josymar Torrejon-Magallanes [cre, aut]
Maintainer: Josymar Torrejon-Magallanes <ejosymart@gmail.com>
Diff between sizeMat versions 0.2.0 dated 2016-09-22 and 0.3.0 dated 2017-04-03
DESCRIPTION | 6 - MD5 | 24 ++-- R/gonadMat-internal.R | 11 - R/morphMat-internal.R | 15 +- R/morphMat-main.R | 282 ++++++++++++++++++++++++------------------------- inst/doc/sizeMat.html | 4 man/classify_mature.Rd | 20 +-- man/morph_mature.Rd | 14 +- man/plot.classify.Rd | 6 - man/plot.morphMat.Rd | 6 - man/print.classify.Rd | 4 man/print.morphMat.Rd | 4 man/sizeMat-package.Rd | 36 +++--- 13 files changed, 215 insertions(+), 217 deletions(-)
Title: Quality Report Generation for MaxQuant Results
Description: Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (see <http://www.maxquant.org>).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) <doi:10.1021/acs.jproteome.5b00780>.
Author: Chris Bielow <chris.bielow@fu-berlin.de>
Maintainer: Chris Bielow <chris.bielow@fu-berlin.de>
Diff between PTXQC versions 0.82.2 dated 2017-02-17 and 0.82.3 dated 2017-04-03
DESCRIPTION | 12 - MD5 | 38 +-- NEWS | 4 R/fcn_MQ.R | 15 + R/fcn_computeQC.R | 291 ++++++++++++++-------------- inst/doc/PTXQC-Basic_Guide_for_R_users.Rmd | 2 inst/doc/PTXQC-Basic_Guide_for_R_users.html | 182 ++++++++--------- inst/doc/PTXQC-CustomizeReport.Rmd | 4 inst/doc/PTXQC-CustomizeReport.html | 10 inst/doc/PTXQC-DragNDrop.Rmd | 2 inst/doc/PTXQC-DragNDrop.html | 8 inst/doc/PTXQC-FAQ.Rmd | 2 inst/doc/PTXQC-FAQ.html | 8 inst/doc/PTXQC-Input_And_Output_Data.Rmd | 2 inst/doc/PTXQC-Input_And_Output_Data.html | 8 vignettes/PTXQC-Basic_Guide_for_R_users.Rmd | 2 vignettes/PTXQC-CustomizeReport.Rmd | 4 vignettes/PTXQC-DragNDrop.Rmd | 2 vignettes/PTXQC-FAQ.Rmd | 2 vignettes/PTXQC-Input_And_Output_Data.Rmd | 2 20 files changed, 313 insertions(+), 287 deletions(-)
Title: Fitting Frailty Models with the EM Algorithm
Description: Contains functions for fitting shared frailty models with a semi-parametric
baseline hazard with the Expectation-Maximization algorithm. Supported data formats
include clustered failures with left truncation and recurrent events in gap-time
or Andersen-Gill format. Several frailty distributions, such as the the gamma, positive stable
and the Power Variance Family are supported.
Author: Theodor Adrian Balan, Hein Putter
Maintainer: Theodor Adrian Balan <t.a.balan@lumc.nl>
Diff between frailtyEM versions 0.5.2 dated 2017-03-22 and 0.5.4 dated 2017-04-03
DESCRIPTION | 8 +-- MD5 | 29 ++++++------ NAMESPACE | 2 NEWS.md |only R/RcppExports.R | 1 R/emfrail.R | 4 + R/plot_methods.R | 4 + R/predict.emfrail.R | 101 +++++++++++++++++++++++++++++------------- R/print.emfrail_summary.R | 4 - R/summary.emfrail.R | 6 ++ build/vignette.rds |binary inst/doc/frailtyEM_manual.pdf |binary man/emfrail.Rd | 3 - man/plot_emfrail.Rd | 4 + man/predict.emfrail.Rd | 13 ++--- src/emfrail_estep.cpp | 1 16 files changed, 120 insertions(+), 60 deletions(-)
Title: Extreme Value Mixture Modelling, Threshold Estimation and
Boundary Corrected Kernel Density Estimation
Description: The usual distribution functions, maximum likelihood inference and
model diagnostics for univariate stationary extreme value mixture models
are provided. Kernel density estimation including various boundary
corrected kernel density estimation methods and a wide choice of kernels,
with cross-validation likelihood based bandwidth estimator.
Reasonable consistency with the base functions in the 'evd' package is
provided, so that users can safely interchange most code.
Author: Carl Scarrott and Yang Hu, University of Canterbury
Maintainer: Carl Scarrott <carl.scarrott@canterbury.ac.nz>
Diff between evmix versions 2.6 dated 2015-05-27 and 2.7 dated 2017-04-03
DESCRIPTION | 11 - MD5 | 182 ++++++++-------- NAMESPACE | 3 R/dgammagpdcon.r | 2 R/dgkgcon.r | 4 R/dgngcon.r | 4 R/dpsden.r | 2 R/dpsdengpd.r | 2 R/evmix-package.r | 6 R/evmixdiag.r | 12 + R/fgammagpd.r | 2 R/fhpd.r | 3 R/fhpdcon.r | 2 R/fkden.r | 8 R/fpsden.r | 4 R/fpsdengpd.r | 4 inst/CITATION | 8 inst/doc/Rd2.pdf |binary man/bckden.Rd | 131 +++--------- man/bckdengpd.Rd | 131 +++--------- man/bckdengpdcon.Rd | 131 +++--------- man/betagpd.Rd | 64 +++-- man/betagpdcon.Rd | 64 +++-- man/checking.Rd | 36 ++- man/dwm.Rd | 64 +++-- man/evmix-package.Rd | 17 - man/evmix.diag.Rd | 67 ++++-- man/fbckden.Rd | 161 ++++---------- man/fbckdengpd.Rd | 105 +++------ man/fbckdengpdcon.Rd | 102 +++------ man/fbetagpd.Rd | 62 +++-- man/fbetagpdcon.Rd | 63 +++-- man/fdwm.Rd | 55 ++--- man/fgammagpd.Rd | 212 +++---------------- man/fgammagpdcon.Rd | 213 +++---------------- man/fgkg.Rd | 85 ++++--- man/fgkgcon.Rd | 91 ++++---- man/fgng.Rd | 185 ++++------------- man/fgngcon.Rd | 179 ++++------------ man/fgpd.Rd | 110 ++++------ man/fhpd.Rd | 73 +++--- man/fhpdcon.Rd | 65 +++-- man/fitmgng.Rd | 172 +++------------ man/fitmnormgpd.Rd | 43 ++- man/fitmweibullgpd.Rd | 43 ++- man/fkden.Rd | 161 ++++---------- man/fkdengpd.Rd | 100 +++------ man/fkdengpdcon.Rd | 101 +++------ man/flognormgpd.Rd | 71 +++--- man/flognormgpdcon.Rd | 66 +++--- man/fmgamma.Rd | 230 +++------------------ man/fmgammagpd.Rd | 233 ++++++--------------- man/fmgammagpdcon.Rd | 217 ++++++------------- man/fnormgpd.Rd | 220 +++++--------------- man/fnormgpdcon.Rd | 165 +++------------ man/fpsden.Rd | 63 +++-- man/fpsdengpd.Rd | 59 +++-- man/fweibullgpd.Rd | 71 +++--- man/fweibullgpdcon.Rd | 66 +++--- man/gammagpd.Rd | 216 +++---------------- man/gammagpdcon.Rd | 218 +++----------------- man/gkg.Rd | 79 ++++--- man/gkgcon.Rd | 86 ++++--- man/gng.Rd | 177 +++------------- man/gngcon.Rd | 188 ++++------------- man/gpd.Rd | 55 +++-- man/hillplot.Rd | 42 +-- man/hpd.Rd | 76 +++--- man/hpdcon.Rd | 73 +++--- man/internal.Rd | 48 ++-- man/itmgng.Rd | 194 ++++------------- man/itmnormgpd.Rd | 68 ++++-- man/itmweibullgpd.Rd | 68 ++++-- man/kden.Rd | 125 +++-------- man/kdengpd.Rd | 123 +++-------- man/kdengpdcon.Rd | 125 +++-------- man/kernels.Rd | 543 +++++++++++++++++++++++++++++++++++++++++++++++--- man/kfun.Rd | 318 ++--------------------------- man/lognormgpd.Rd | 70 +++--- man/lognormgpdcon.Rd | 62 +++-- man/mgamma.Rd | 213 +++---------------- man/mgammagpd.Rd | 221 +++----------------- man/mgammagpdcon.Rd | 221 +++----------------- man/mrlplot.Rd | 27 +- man/normgpd.Rd | 168 +++------------ man/normgpdcon.Rd | 170 +++------------ man/pickandsplot.Rd | 40 +-- man/psden.Rd | 68 +++--- man/psdengpd.Rd | 52 +++- man/tcplot.Rd | 28 +- man/weibullgpd.Rd | 69 +++--- man/weibullgpdcon.Rd | 61 +++-- 92 files changed, 3487 insertions(+), 5611 deletions(-)
More information about sensors4plumes at CRAN
Permanent link
Title: Goodness of Fit Tests for High-Dimensional Linear Regression
Models
Description: Performs goodness of fits tests for both high and low-dimensional linear models.
It can test for a variety of model misspecifications including nonlinearity and heteroscedasticity.
In addition one can test the significance of potentially large groups of variables, and also
produce p-values for the significance of individual variables in high-dimensional linear
regression.
Author: Rajen Shah [aut, cre],
Peter Buhlmann [aut]
Maintainer: Rajen Shah <r.shah@statslab.cam.ac.uk>
Diff between RPtests versions 0.1.3 dated 2017-01-27 and 0.1.4 dated 2017-04-03
DESCRIPTION | 6 +++--- MD5 | 5 +++-- NAMESPACE | 4 +--- src/RPtests_init.c |only 4 files changed, 7 insertions(+), 8 deletions(-)
Title: Relationship Inference for DNA Mixtures
Description: Makes relationship inference involving DNA mixtures with unknown profiles.
Author: Navreet Kaur, Thore Egeland, Guro Dorum
Maintainer: Guro Dorum <guro.dorum@gmail.com>
Diff between relMix versions 1.2.2 dated 2016-12-14 and 1.2.3 dated 2017-04-03
DESCRIPTION | 10 MD5 | 18 NAMESPACE | 12 R/relMixGUI.R | 1674 ++++++++++++++++++++++--------------------- inst/doc/relMixVignette.Rmd | 386 ++++----- inst/doc/relMixVignette.html | 18 man/relMix.Rd | 259 +++--- vignettes/relMixVignette.Rmd | 386 ++++----- vignettes/results_ex1.png |binary vignettes/results_ex2.png |binary 10 files changed, 1407 insertions(+), 1356 deletions(-)
Title: Interface Between R and the OpenStreetMap-Based Routing Service
OSRM
Description: An interface between R and the OSRM API. OSRM is a routing
service based on OpenStreetMap data. See <http://project-osrm.org/> for more
information. A public API exists but one can run its own instance. This package
allows to compute distances (travel time and kilometric distance) between points
and travel time matrices.
Author: Timothée Giraud [cre, aut],
Robin Cura [ctb],
Matthieu Viry [ctb]
Maintainer: Timothée Giraud <timothee.giraud@cnrs.fr>
Diff between osrm versions 3.0.0 dated 2016-05-09 and 3.0.1 dated 2017-04-03
DESCRIPTION | 18 ++++++------ MD5 | 38 +++++++++++++------------- NAMESPACE | 1 NEWS | 14 +++++++++ R/intern.R | 2 - R/osrmIsochrone.R | 1 R/osrmRoute.R | 6 ++-- R/osrmTable.R | 4 +- R/osrmTrip.R | 47 +++++++++++++++++---------------- R/package.R | 27 ++++++++++++++----- R/zzz.R | 2 - README.md | 72 +++++++++++++++++++++++++++++---------------------- man/com.Rd | 1 man/dst.Rd | 1 man/osrm.Rd | 27 ++++++++++++++----- man/osrmIsochrone.Rd | 1 man/osrmRoute.Rd | 1 man/osrmTable.Rd | 1 man/osrmTrip.Rd | 1 man/src.Rd | 1 20 files changed, 157 insertions(+), 109 deletions(-)
Title: Flux Estimation with Static Chamber Data
Description: Statistical analysis of static chamber concentration data for trace gas flux estimation.
Author: Asger R. Pedersen <asger@clin.au.dk>
Maintainer: Asger R. Pedersen <asger@clin.au.dk>
Diff between HMR versions 0.4.1 dated 2015-01-27 and 0.4.2 dated 2017-04-03
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 6 +++--- R/HMR.fit1.R | 21 ++++++++++++--------- R/HMR.main.R | 57 ++++----------------------------------------------------- man/HMR.Rd | 19 +++++++++++-------- 6 files changed, 38 insertions(+), 81 deletions(-)
More information about groupsubsetselection at CRAN
Permanent link
Title: A Method to Search for Differentially Expressed Genes and to
Detect Recurrent Chromosomal Copy Number Aberrations
Description: A fold change rank based method is presented to search for genes with changing
expression and to detect recurrent chromosomal copy number aberrations. This
method may be useful for high-throughput biological data (micro-array, sequencing, ...).
Probabilities are associated with genes or probes in the data set and there is no
problem of multiple tests when using this method. For array-based comparative genomic
hybridization data, segmentation results are obtained by merging the significant
probes detected.
Author: Doulaye Dembele
Maintainer: Doulaye Dembele <doulaye@igbmc.fr>
Diff between fcros versions 1.5.2 dated 2016-11-17 and 1.5.3 dated 2017-04-03
fcros-1.5.2/fcros/R/fcrosC.R |only fcros-1.5.2/fcros/man/fcrosC.Rd |only fcros-1.5.2/fcros/src/fcros.cpp |only fcros-1.5.3/fcros/DESCRIPTION | 23 +++++++------- fcros-1.5.3/fcros/MD5 | 52 ++++++++++++++++----------------- fcros-1.5.3/fcros/NAMESPACE | 4 +- fcros-1.5.3/fcros/R/chrMerge.R | 28 ++++++++--------- fcros-1.5.3/fcros/R/fc2Calc.R | 7 +--- fcros-1.5.3/fcros/R/fcros.R | 29 +++++------------- fcros-1.5.3/fcros/R/fcrosMod.R | 27 +++++------------ fcros-1.5.3/fcros/R/histoPlot.R | 2 - fcros-1.5.3/fcros/R/moyStdCalc.R | 8 +---- fcros-1.5.3/fcros/R/pfco.R | 42 +++++++++----------------- fcros-1.5.3/fcros/R/pfcoMod.R | 34 +++++++-------------- fcros-1.5.3/fcros/R/rmatCalc.R | 8 +---- fcros-1.5.3/fcros/R/rmatTrim.R | 7 +--- fcros-1.5.3/fcros/R/tprobaCalc.R | 7 +--- fcros-1.5.3/fcros/man/chrPlot.rd | 2 - fcros-1.5.3/fcros/man/chrPlot2.rd | 2 - fcros-1.5.3/fcros/man/chrSegment.rd | 2 - fcros-1.5.3/fcros/man/dataSummary.rd | 2 - fcros-1.5.3/fcros/man/fc2Calc.rd | 3 - fcros-1.5.3/fcros/man/fcros-package.Rd | 4 +- fcros-1.5.3/fcros/man/moyStdCalc.rd | 4 -- fcros-1.5.3/fcros/man/rmatCalc.rd | 11 ++---- fcros-1.5.3/fcros/man/rmatTrim.rd | 3 - fcros-1.5.3/fcros/man/tprobaCalc.rd | 3 - fcros-1.5.3/fcros/src/fcros.c |only fcros-1.5.3/fcros/src/fcros.h |only fcros-1.5.3/fcros/src/init.c |only 30 files changed, 128 insertions(+), 186 deletions(-)
Title: Explanation of Predictions for Classification and Regression
Models
Description: Generates explanations for classification and regression models and visualizes them.
Explanations are generated for individual predictions as well as for models as a whole. Two explanation methods
are included, EXPLAIN and IME. The EXPLAIN method is fast but might miss explanations expressed redundantly
in the model. The IME method is slower as it samples from all feature subsets.
For the EXPLAIN method see Robnik-Sikonja and Kononenko (2008) <doi:10.1109/TKDE.2007.190734>,
and the IME method is described in Strumbelj and Kononenko (2010, JMLR, vol. 11:1-18).
All models in package 'CORElearn' are natively supported, for other prediction models a wrapper function is provided
and illustrated for models from packages 'randomForest', 'nnet', and 'e1071'.
Author: Marko Robnik-Sikonja
Maintainer: Marko Robnik-Sikonja <marko.robnik@fri.uni-lj.si>
Diff between ExplainPrediction versions 1.1.4 dated 2016-11-05 and 1.1.8 dated 2017-04-03
ChangeLog | 6 DESCRIPTION | 21 MD5 | 10 NAMESPACE | 5 R/explain.R | 1664 +++++++++++++++++++++++++++-------------------------- man/explanation.Rd | 14 6 files changed, 886 insertions(+), 834 deletions(-)
More information about ExplainPrediction at CRAN
Permanent link
Title: Model Based Clustering for Mixed Data
Description: Model-based clustering of mixed data (i.e. data which consist of
continuous, binary, ordinal or nominal variables) using a parsimonious
mixture of latent Gaussian variable models.
Author: Damien McParland [aut, cre],
Isobel Claire Gormley [aut]
Maintainer: Damien McParland <damien.mcparland@ucd.ie>
Diff between clustMD versions 1.1 dated 2015-06-04 and 1.2 dated 2017-04-03
clustMD-1.1/clustMD/R/E.step.R |only clustMD-1.1/clustMD/R/M.step.R |only clustMD-1.1/clustMD/R/ObsLogLikelihood.R |only clustMD-1.1/clustMD/R/clustMD-internal.R |only clustMD-1.1/clustMD/R/npars_clustMD.R |only clustMD-1.1/clustMD/R/perc.cutoffs.R |only clustMD-1.1/clustMD/R/z.moments.R |only clustMD-1.1/clustMD/R/z.nom.diag.R |only clustMD-1.2/clustMD/DESCRIPTION | 26 + clustMD-1.2/clustMD/MD5 | 57 ++-- clustMD-1.2/clustMD/NAMESPACE | 24 + clustMD-1.2/clustMD/R/WelcomeMessage.R |only clustMD-1.2/clustMD/R/clustMD.R | 268 ++++++------------- clustMD-1.2/clustMD/R/clustMD_InternalFunctions.R |only clustMD-1.2/clustMD/R/clustMD_Methods.R |only clustMD-1.2/clustMD/R/clustMD_UserFunctions.R |only clustMD-1.2/clustMD/R/clustMD_UtilityFunctions.R |only clustMD-1.2/clustMD/README.md |only clustMD-1.2/clustMD/man/Byar.Rd | 96 ++++-- clustMD-1.2/clustMD/man/E.step.Rd | 114 +++----- clustMD-1.2/clustMD/man/M.step.Rd | 95 ++---- clustMD-1.2/clustMD/man/ObsLogLikelihood.Rd | 112 +++---- clustMD-1.2/clustMD/man/clustMD-package.Rd | 34 +- clustMD-1.2/clustMD/man/clustMD.Rd | 199 ++++++++------ clustMD-1.2/clustMD/man/clustMDlist.Rd |only clustMD-1.2/clustMD/man/clustMDparallel.Rd |only clustMD-1.2/clustMD/man/clustMDparcoord.Rd |only clustMD-1.2/clustMD/man/dtmvnom.Rd |only clustMD-1.2/clustMD/man/getOutput_clustMDparallel.Rd |only clustMD-1.2/clustMD/man/modal.value.Rd |only clustMD-1.2/clustMD/man/npars_clustMD.Rd | 62 +--- clustMD-1.2/clustMD/man/patt.equal.Rd |only clustMD-1.2/clustMD/man/perc.cutoffs.Rd | 51 +-- clustMD-1.2/clustMD/man/plot.clustMD.Rd |only clustMD-1.2/clustMD/man/plot.clustMDparallel.Rd |only clustMD-1.2/clustMD/man/print.clustMD.Rd |only clustMD-1.2/clustMD/man/print.clustMDparallel.Rd |only clustMD-1.2/clustMD/man/qfun.Rd |only clustMD-1.2/clustMD/man/stable.probs.Rd |only clustMD-1.2/clustMD/man/summary.clustMD.Rd |only clustMD-1.2/clustMD/man/summary.clustMDparallel.Rd |only clustMD-1.2/clustMD/man/vec.outer.Rd |only clustMD-1.2/clustMD/man/z.moments.Rd | 105 ++----- clustMD-1.2/clustMD/man/z.moments_diag.Rd |only clustMD-1.2/clustMD/man/z.nom.diag.Rd | 37 -- 45 files changed, 564 insertions(+), 716 deletions(-)
Title: Beyond the Border
Description: Kernel density estimation dedicated to urban geography.
Author: Thierry Cornely, Laure Genebes, Arlindo Dos Santos, Cynthia Faivre,
Auriane Renaud, Farida Marouchi and Francois Semecurbe
Maintainer: Arlindo Dos Santos <Arlindo.Dos-Santos@insee.fr>
Diff between btb versions 0.1.3 dated 2016-10-28 and 0.1.14 dated 2017-04-03
DESCRIPTION | 13 +- MD5 | 26 ++-- NAMESPACE | 3 R/Grid.R | 281 ++++++++++++++++++++++++++-------------------- R/RcppExports.R | 30 ++-- inst |only man/kernelSmoothing.Rd | 91 ++++++++++---- man/reunion.Rd | 2 man/smoothingToGrid.Rd | 25 +++- src/RcppExports.cpp | 15 +- src/init.c |only src/rcppLissage.cpp | 103 +++++++++------- src/rcppLissageMedian.cpp | 53 +++++--- 13 files changed, 386 insertions(+), 256 deletions(-)
Title: High Precise Measurement of R Expressions Execution Time
Description: Provides infrastructure to accurately measure and compare
the execution time of R expressions.
Author: Artem Klevtsov [aut, cre],
Anton Antonov [ctb],
Philipp Upravitelev [ctb]
Maintainer: Artem Klevtsov <a.a.klevtsov@gmail.com>
Diff between benchr versions 0.1.0 dated 2016-11-20 and 0.2.0 dated 2017-04-03
benchr-0.1.0/benchr/inst |only benchr-0.2.0/benchr/DESCRIPTION | 12 +-- benchr-0.2.0/benchr/MD5 | 49 ++++++------ benchr-0.2.0/benchr/NAMESPACE | 3 benchr-0.2.0/benchr/NEWS.md |only benchr-0.2.0/benchr/R/RcppExports.R | 4 - benchr-0.2.0/benchr/R/benchmark.R | 40 +++++----- benchr-0.2.0/benchr/R/benchr-package.R | 27 +++--- benchr-0.2.0/benchr/R/boxplot.R | 29 +++---- benchr-0.2.0/benchr/R/mean.R | 18 ++-- benchr-0.2.0/benchr/R/plot.R | 20 ++--- benchr-0.2.0/benchr/R/print.R | 26 +++--- benchr-0.2.0/benchr/R/summary.R | 12 +-- benchr-0.2.0/benchr/man/benchmark.Rd | 29 ++++--- benchr-0.2.0/benchr/man/benchr.Rd | 39 +++++++--- benchr-0.2.0/benchr/man/boxplot.benchmark.Rd | 11 +- benchr-0.2.0/benchr/man/mean.benchmark.Rd | 7 - benchr-0.2.0/benchr/man/plot.benchmark.Rd | 7 - benchr-0.2.0/benchr/man/print.benchmark.Rd | 13 +-- benchr-0.2.0/benchr/man/summary.benchmark.Rd | 9 +- benchr-0.2.0/benchr/man/timer_precision.Rd | 1 benchr-0.2.0/benchr/src/RcppExports.cpp | 7 + benchr-0.2.0/benchr/src/clock.h | 5 + benchr-0.2.0/benchr/src/init.c |only benchr-0.2.0/benchr/src/timer.cpp | 12 ++- benchr-0.2.0/benchr/tests/testthat/test-plot.R | 93 ++++++++++++------------ benchr-0.2.0/benchr/tests/testthat/test-timer.R | 7 + 27 files changed, 259 insertions(+), 221 deletions(-)
Title: Applied Statistical Hypothesis Tests
Description: Some hypothesis test functions (sign test, median and other quantile tests, Wilcoxon signed rank test, coefficient of variation test, test of normal variance, test on weighted sums of Poisson, sample size for t-tests with different variances and non-equal n per arm, Behrens-Fisher test) with a focus on non-asymptotic methods that have matching confidence intervals.
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between asht versions 0.8 dated 2017-02-07 and 0.9 dated 2017-04-03
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++++---- NAMESPACE | 8 ++++++-- R/bfTest.R |only inst/NEWS.Rd | 11 +++++++++++ man/asht-package.Rd | 6 +++--- man/bfControl.Rd |only man/bfTest.Rd |only man/pbf.Rd |only 9 files changed, 33 insertions(+), 14 deletions(-)
Title: Robust Sparse PCA using the ROSPCA Algorithm
Description: Implementation of robust sparse PCA using the ROSPCA algorithm
of Hubert et al. (2016) <DOI:10.1080/00401706.2015.1093962>.
Author: Tom Reynkens [aut, cre],
Valentin Todorov [ctb] (Original R code for PcaHubert and diagnostic
plot in rrcov package),
Mia Hubert [ctb],
Eric Schmitt [ctb],
Tim Verdonck [ctb]
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between rospca versions 1.0.1 dated 2017-02-28 and 1.0.2 dated 2017-04-03
DESCRIPTION | 13 +- MD5 | 22 +-- NAMESPACE | 2 R/Aux_sparse_robust.R | 152 ++++++++++++------------- R/Robpca.R | 138 +++++++++++------------ R/Rospca.R | 293 +++++++++++++++++++++++++------------------------- R/SelectLambda.R | 93 ++++++++------- R/Sim_aux.R | 208 +++++++++++++++++------------------ inst/NEWS.Rd | 11 + man/robpca.Rd | 4 man/rospca.Rd | 4 man/selectLambda.Rd | 2 12 files changed, 480 insertions(+), 462 deletions(-)
Title: Global Summary Daily Weather Data in R
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day (GSOD) weather data from
the from the USA National Centers for Environmental Information (NCEI) for
use in R. Units are converted from from United States Customary System
(USCS) units to International System of Units (SI). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure (es), actual
vapour pressure (ea) and relative humidity are calculated from the original
data and included in the final data set. The resulting data include station
identification information, state, country, latitude, longitude, elevation,
weather observations and associated flags. Data may be automatically saved
to disk. File output may be returned as a comma-separated values (CSV) or
GeoPackage (GPKG) file. Additional data are included with this R package: a
list of elevation values for stations between -60 and 60 degrees latitude
derived from the Shuttle Radar Topography Measuring Mission (SRTM). For
information on the GSOD data from NCEI, please see the GSOD readme.txt file
available from, <http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre],
Tomislav Hengl [aut],
Andrew Nelson [aut]
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 1.0.2 dated 2017-04-03 and 1.0.2.1 dated 2017-04-03
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 7 ++++++- README.md | 2 +- inst/doc/GSODR.Rmd | 6 +++--- inst/doc/GSODR.html | 6 +++--- inst/doc/Working_with_spatial_and_climate_data.Rmd | 2 +- inst/doc/Working_with_spatial_and_climate_data.html | 2 +- vignettes/GSODR.Rmd | 6 +++--- vignettes/Working_with_spatial_and_climate_data.Rmd | 2 +- 10 files changed, 31 insertions(+), 26 deletions(-)
Title: Calculator for LR Fuzzy Numbers
Description: Arithmetic operations scalar multiplication, addition, subtraction, multiplication and division of LR fuzzy numbers (which are on the basis of extension principle) have a complicate form for using in fuzzy Statistics, fuzzy Mathematics, machine learning, fuzzy data analysis and etc. Calculator for LR Fuzzy Numbers package relieve and aid applied users to achieve a simple and closed form for some complicated operator based on LR fuzzy numbers and also the user can easily draw the membership function of the obtained result by this package.
Author: Abbas Parchami (Department of Statistics, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran)
Maintainer: Abbas Parchami <parchami@uk.ac.ir>
Diff between Calculator.LR.FNs versions 1.1 dated 2016-04-11 and 1.2 dated 2017-04-03
DESCRIPTION | 10 ++-- MD5 | 24 +++++------ NAMESPACE | 2 R/LRFN.plot.R | 20 +++------ build/partial.rdb |binary man/Calculator.LR.FNs-package.Rd | 56 +++++++++++--------------- man/LRFN.plot.Rd | 84 +++++++++++---------------------------- man/a.Rd | 8 +-- man/d.Rd | 17 +++---- man/m.Rd | 25 ++++------- man/s.Rd | 6 +- man/s.m.Rd | 7 +-- man/support.Rd | 2 13 files changed, 101 insertions(+), 160 deletions(-)
More information about Calculator.LR.FNs at CRAN
Permanent link
Title: Diving Calculations and Decompression Models
Description: Code for describing and manipulating scuba diving profiles
(depth-time curves) and decompression models,
for calculating the predictions of decompression models,
for calculating maximum no-decompression time and decompression tables,
and for performing mixed gas calculations.
Author: Adrian Baddeley [aut, cre],
Vittorio Broglio [ctb, dtc],
Pedro Antonio Neves [ctb, dtc],
Andrew Bassom [ctb],
Peter Buzzacott [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between scuba versions 1.8-0 dated 2015-07-02 and 1.9-1 dated 2017-04-03
DESCRIPTION | 14 +++++++------- MD5 | 19 ++++++++++--------- NAMESPACE | 6 ++++-- R/haldane.R | 6 +++--- build/vignette.rds |binary data/Bookspan.rda |binary data/baron.rda |binary data/deepmine.rda |binary data/pedro.rda |binary inst/doc/intro.pdf |binary src/init.c |only 11 files changed, 24 insertions(+), 21 deletions(-)
Title: Global Summary Daily Weather Data in R
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day (GSOD) weather data from
the from the USA National Centers for Environmental Information (NCEI) for
use in R. Units are converted from from United States Customary System
(USCS) units to International System of Units (SI). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure (es), actual
vapour pressure (ea) and relative humidity are calculated from the original
data and included in the final data set. The resulting data include station
identification information, state, country, latitude, longitude, elevation,
weather observations and associated flags. Data may be automatically saved
to disk. File output may be returned as a comma-separated values (CSV) or
GeoPackage (GPKG) file. Additional data are included with this R package: a
list of elevation values for stations between -60 and 60 degrees latitude
derived from the Shuttle Radar Topography Measuring Mission (SRTM). For
information on the GSOD data from NCEI, please see the GSOD readme.txt file
available from, <http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre],
Tomislav Hengl [aut],
Andrew Nelson [aut]
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 1.0.1 dated 2017-01-27 and 1.0.2 dated 2017-04-03
GSODR-1.0.1/GSODR/vignettes/GSODR.md |only GSODR-1.0.1/GSODR/vignettes/Specified_stations_for_a_range_of_years.md |only GSODR-1.0.1/GSODR/vignettes/Working_with_spatial_and_climate_data.md |only GSODR-1.0.2/GSODR/DESCRIPTION | 45 - GSODR-1.0.2/GSODR/MD5 | 74 +-- GSODR-1.0.2/GSODR/NEWS.md | 11 GSODR-1.0.2/GSODR/R/GSODR.R | 36 - GSODR-1.0.2/GSODR/R/data.R | 22 GSODR-1.0.2/GSODR/R/get_GSOD.R | 45 - GSODR-1.0.2/GSODR/R/get_station_list.R | 6 GSODR-1.0.2/GSODR/R/nearest_stations.R | 12 GSODR-1.0.2/GSODR/R/process_gz.R | 4 GSODR-1.0.2/GSODR/R/reformat_GSOD.R | 29 - GSODR-1.0.2/GSODR/README.md | 243 ++++------ GSODR-1.0.2/GSODR/build/vignette.rds |binary GSODR-1.0.2/GSODR/data/SRTM_GSOD_elevation.rda |binary GSODR-1.0.2/GSODR/data/country_list.rda |binary GSODR-1.0.2/GSODR/inst/CITATION | 34 - GSODR-1.0.2/GSODR/inst/doc/GSODR.R |only GSODR-1.0.2/GSODR/inst/doc/GSODR.Rmd | 54 -- GSODR-1.0.2/GSODR/inst/doc/GSODR.html | 48 - GSODR-1.0.2/GSODR/inst/doc/Specified_stations_for_a_range_of_years.R |only GSODR-1.0.2/GSODR/inst/doc/Specified_stations_for_a_range_of_years.Rmd | 181 +++++-- GSODR-1.0.2/GSODR/inst/doc/Specified_stations_for_a_range_of_years.html | 173 +++++-- GSODR-1.0.2/GSODR/inst/doc/Working_with_spatial_and_climate_data.R | 31 - GSODR-1.0.2/GSODR/inst/doc/Working_with_spatial_and_climate_data.Rmd | 152 ++---- GSODR-1.0.2/GSODR/inst/doc/Working_with_spatial_and_climate_data.html | 136 ++--- GSODR-1.0.2/GSODR/man/GSODR.Rd | 42 - GSODR-1.0.2/GSODR/man/SRTM_GSOD_elevation.Rd | 19 GSODR-1.0.2/GSODR/man/country_list.Rd | 5 GSODR-1.0.2/GSODR/man/figures |only GSODR-1.0.2/GSODR/man/get_GSOD.Rd | 27 - GSODR-1.0.2/GSODR/man/get_station_list.Rd | 7 GSODR-1.0.2/GSODR/man/nearest_stations.Rd | 5 GSODR-1.0.2/GSODR/man/reformat_GSOD.Rd | 36 - GSODR-1.0.2/GSODR/tests/testthat/test-get_GSOD.R | 101 +++- GSODR-1.0.2/GSODR/tests/testthat/test-nearest_stations.R | 9 GSODR-1.0.2/GSODR/tests/testthat/test-process_gz.R | 1 GSODR-1.0.2/GSODR/vignettes/GSODR.Rmd | 54 -- GSODR-1.0.2/GSODR/vignettes/Specified_stations_for_a_range_of_years.Rmd | 181 +++++-- GSODR-1.0.2/GSODR/vignettes/Working_with_spatial_and_climate_data.Rmd | 152 ++---- 41 files changed, 1090 insertions(+), 885 deletions(-)
Title: Classical Goodness-of-Fit Tests for Univariate Distributions
Description: Cramer-Von Mises and Anderson-Darling tests of goodness-of-fit
for continuous univariate distributions, using
efficient algorithms.
Author: Julian Faraway [aut],
George Marsaglia [aut],
John Marsaglia [aut],
Adrian Baddeley [aut, cre]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between goftest versions 1.0-4 dated 2017-02-03 and 1.1-1 dated 2017-04-03
goftest-1.0-4/goftest/R/RCS |only goftest-1.1-1/goftest/DESCRIPTION | 10 +++++----- goftest-1.1-1/goftest/MD5 | 15 ++++++++------- goftest-1.1-1/goftest/NAMESPACE | 2 +- goftest-1.1-1/goftest/R/andarl.R | 23 ++++++++++++----------- goftest-1.1-1/goftest/R/oldRCS |only goftest-1.1-1/goftest/src/init.c |only 7 files changed, 26 insertions(+), 24 deletions(-)
Title: A Tool to Downsize Large Workflows for Testing
Description: Toggles the test and production versions of a large workflow.
Author: William Michael Landau [aut, cph, cre]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between downsize versions 0.2.1 dated 2016-10-17 and 0.2.2 dated 2017-04-03
DESCRIPTION | 18 +++++++++--------- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/namespace.R | 2 +- build/vignette.rds |binary inst/doc/downsize.Rmd | 2 +- inst/doc/downsize.html | 8 ++++---- tests/testthat/test-downsize.R | 13 +++++++++++++ vignettes/downsize.Rmd | 2 +- 9 files changed, 38 insertions(+), 25 deletions(-)
Title: Dimension Reduction Methods for Multivariate Time Series
Description: Estimates VAR and VARX models with structured Lasso Penalties.
Author: Will Nicholson [cre, aut],
David Matteson [aut],
Jacob Bien [aut]
Maintainer: Will Nicholson <wbn8@cornell.edu>
Diff between BigVAR versions 1.0.1 dated 2016-05-25 and 1.0.2 dated 2017-04-03
DESCRIPTION | 11 - MD5 | 51 ++++--- NAMESPACE | 2 NEWS | 4 R/RcppExports.R | 2 inst/include/BigVAR.h | 6 man/A.Rd | 7 - man/BigVAR-class.Rd | 2 man/BigVAR.Rd | 7 - man/BigVAR.est-methods.Rd | 1 man/BigVAR.results-plot-methods.Rd | 1 man/BigVAR.results.Rd | 2 man/MultVarSim.Rd | 1 man/SparsityPlot.BigVAR.results-methods.Rd | 1 man/VARXFit.Rd | 1 man/VARXForecastEval.Rd | 1 man/VarptoVar1MC.Rd | 1 man/Y.Rd | 1 man/constructModel.Rd | 1 man/cv.BigVAR-methods.Rd | 1 man/plot.BigVAR-methods.Rd | 3 man/predict-methods-BigVAR.results.Rd | 1 man/show-methods-BigVAR.results.Rd | 1 man/show-methods.Rd | 3 src/BigVAR_init.c |only src/ExperimentalBigVARFunctionsX.cpp | 1 src/RcppExports.cpp | 186 ++++++++++++++--------------- 27 files changed, 142 insertions(+), 157 deletions(-)