Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors; automatic propagation,
conversion, derivation and simplification of units; raising errors in case
of unit incompatibility. Compatible with the difftime class. Uses the UNIDATA
udunits library and unit database for unit conversion and compatibility
checking.
Author: Edzer Pebesma [aut, cre],
Thomas Mailund [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between units versions 0.4-3 dated 2017-03-25 and 0.4-4 dated 2017-04-20
DESCRIPTION | 6 +- MD5 | 17 +++--- NAMESPACE | 1 NEWS.md |only R/arith.R | 11 +++ R/misc.R | 6 ++ inst/doc/measurement_units_in_R.Rmd | 2 inst/doc/measurement_units_in_R.html | 8 +- inst/doc/units.html | 97 +++++++++++++++++------------------ vignettes/measurement_units_in_R.Rmd | 2 10 files changed, 82 insertions(+), 68 deletions(-)
Title: Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Description: Plot 'rpart' models. Extends plot.rpart() and text.rpart()
in the 'rpart' package.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between rpart.plot versions 2.1.1 dated 2017-02-17 and 2.1.2 dated 2017-04-20
DESCRIPTION | 10 ++--- MD5 | 32 ++++++++--------- NEWS | 9 ++++ R/as.char.R | 4 +- R/lib.R | 4 +- R/lib.rpart.plot.R | 5 +- R/mvpart.labs.R | 3 + R/node.labs.R | 17 +++++---- R/prp.R | 2 - R/snip.R | 2 - R/split.labs.R | 2 - inst/slowtests/code.in.rpart.report.with.prp.R | 4 ++ inst/slowtests/make.bat | 2 - inst/slowtests/test.prp.R | 4 ++ inst/slowtests/test.prp.Rout.save | 46 ++++++++++++++++--------- man/prp.Rd | 8 ++-- man/rpart.plot.Rd | 8 ++-- 17 files changed, 101 insertions(+), 61 deletions(-)
Title: Work with 'GitHub' 'Gists'
Description: Work with 'GitHub' 'gists' from 'R' (e.g.,
<http://en.wikipedia.org/wiki/GitHub#Gist>,
<https://help.github.com/articles/about-gists/>). A 'gist'
is simply one or more files with code/text/images/etc. This package allows
the user to create new 'gists', update 'gists' with new files, rename files,
delete files, get and delete 'gists', star and 'un-star' 'gists', fork 'gists',
open a 'gist' in your default browser, get embed code for a 'gist', list
'gist' 'commits', and get rate limit information when 'authenticated'. Some
requests require authentication and some do not. 'Gists' website:
<https://gist.github.com/>.
Author: Scott Chamberlain [aut, cre],
Ramnath Vaidyanathan [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between gistr versions 0.3.6 dated 2015-12-23 and 0.4.0 dated 2017-04-20
DESCRIPTION | 37 ++--- LICENSE | 2 MD5 | 115 ++++++++------- NAMESPACE | 6 NEWS.md |only R/add_files.R | 23 +-- R/browse.R | 9 - R/commits.R | 9 - R/delete.R | 3 R/forks.R | 9 - R/gist.R | 9 - R/gist_auth.R | 14 - R/gist_create.R | 72 +++------ R/gist_create_git.R | 65 ++++----- R/gist_create_obj.R | 28 ++- R/gist_map.R | 11 - R/gist_save.R | 23 +-- R/gistr-package.R | 40 ++--- R/gists.R | 38 +++-- R/rate_limit.R | 7 R/run.R | 50 +++--- R/star.R | 18 +- R/tabl.R | 37 ++--- R/update.R | 6 R/zzz.R | 29 ++-- README.md | 37 ++--- build/vignette.rds |binary inst/examples/example1.md | 4 inst/examples/plots.Rmd | 4 inst/examples/plots.md | 6 inst/examples/plots_imgur.md | 6 inst/examples/rmarkdown_eg.md | 4 inst/examples/rnw_example.Rnw | 245 ++++++++++++++++++++++++++++++++-- inst/examples/stuff.md | 28 +-- man/browse.Rd | 1 man/commits.Rd | 4 man/create_gists.Rd | 32 ++-- man/delete.Rd | 1 man/embed.Rd | 1 man/files.Rd | 3 man/fork.Rd | 1 man/forks.Rd | 4 man/gist.Rd | 3 man/gist_auth.Rd | 12 - man/gist_create.Rd | 31 ++-- man/gist_create_git.Rd | 38 ++--- man/gist_create_obj.Rd | 8 - man/gist_map.Rd | 5 man/gist_save.Rd | 18 +- man/gistr-package.Rd | 7 man/gists.Rd | 23 ++- man/pipe.Rd | 1 man/rate_limit.Rd | 1 man/run.Rd | 15 +- man/star.Rd | 5 man/tabl.Rd | 8 - man/update.Rd | 4 tests/testthat/test-embed.R | 2 tests/testthat/test-gist_create_git.R | 3 59 files changed, 759 insertions(+), 466 deletions(-)
Title: R Wrapper for the 'Wufoo.com' - The Form Building Service
Description: Allows form managers to download entries from their respondents
using Wufoo JSON API (<https://www.wufoo.com>). Additionally, the Wufoo reports - when public - can be
also acquired programmatically. Note that building new forms within this package
is not supported.
Author: John Malc [aut, cre] (@dmpe),
Maksim Pecherskiy [ctb] (@MrMaksimize)
Maintainer: John Malc <cincenko@outlook.com>
Diff between WufooR versions 0.6.1 dated 2016-03-08 and 0.6.2 dated 2017-04-20
DESCRIPTION | 22 ++++++++-------- MD5 | 34 ++++++++++++------------ NEWS | 6 ++++ R/Fields.R | 4 ++ R/Form.R | 3 +- README.md | 2 - build/vignette.rds |binary inst/doc/Tutorial.html | 45 +++++++-------------------------- man/auth_name.Rd | 3 -- man/fields_info.Rd | 3 -- man/form_entries.Rd | 1 man/form_entriesCount.Rd | 1 man/form_entriesFromCSV.Rd | 1 man/form_info.Rd | 1 man/reports_info.Rd | 1 man/user_info.Rd | 1 tests/testthat/test-fieldsAndreports.R | 2 - tests/testthat/test-forms.R | 2 - 18 files changed, 54 insertions(+), 78 deletions(-)
Title: Sensitivity Analysis for Causal Inference
Description: Utilities to investigate sensitivity to unmeasured confounding in
parametric models with either binary or continuous treatment.
Author: Nicole Bohme Carnegie [aut, cre],
Masataka Harada [aut],
Vincent Dorie [aut],
Jennifer Hill [ctb]
Maintainer: Nicole Bohme Carnegie <carnegin@uwm.edu>
Diff between treatSens versions 2.1 dated 2017-04-06 and 2.1.1 dated 2017-04-20
DESCRIPTION | 6 MD5 | 4 configure |14262 ++++++++++++++++++++++++++++++------------------------------ 3 files changed, 7136 insertions(+), 7136 deletions(-)
Title: Portable System Utilities
Description: Powerful replacements for base system2 with consistent behavior
across platforms. Supports interruption, background tasks, and full control over
STDOUT / STDERR binary or text streams. On Unix systems the package also has
functions for evaluating expressions inside a temporary fork. Such evaluations
have no side effects on the main R process, and support reliable interrupts and
timeouts. This provides the basis for a sandboxing mechanism.
Author: Jeroen Ooms [aut, cre],
Gábor Csárdi [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between sys versions 1.2 dated 2017-04-01 and 1.3 dated 2017-04-20
sys-1.2/sys/src/freeze.c |only sys-1.2/sys/src/init.c |only sys-1.2/sys/src/win32/init.c |only sys-1.3/sys/DESCRIPTION | 9 +- sys-1.3/sys/MD5 | 37 ++++---- sys-1.3/sys/NAMESPACE | 12 ++ sys-1.3/sys/NEWS | 5 + sys-1.3/sys/R/exec.R | 3 sys-1.3/sys/R/fork.R | 127 ++++++++++++++++++------------ sys-1.3/sys/R/util.R |only sys-1.3/sys/cleanup | 4 sys-1.3/sys/configure | 55 ++++++++++++ sys-1.3/sys/man/eval_fork.Rd | 55 ++++++++---- sys-1.3/sys/man/exec.Rd | 3 sys-1.3/sys/man/sys_config.Rd |only sys-1.3/sys/src/Makevars.in |only sys-1.3/sys/src/Makevars.win | 4 sys-1.3/sys/src/exec.c | 7 + sys-1.3/sys/src/fork.c | 84 +++++++++++-------- sys-1.3/sys/src/util.c |only sys-1.3/sys/src/win32/exec.c | 2 sys-1.3/sys/tests/testthat/test-error.R | 12 +- sys-1.3/sys/tests/testthat/test-forking.R | 104 ++++++++++++++++++++++-- 23 files changed, 373 insertions(+), 150 deletions(-)
Title: Missing Morphometric Data Simulation and Estimation
Description: Functions for simulating missing morphometric
data randomly, with taxonomic bias and with anatomical bias. LOST also
includes functions for estimating linear and geometric morphometric data.
Author: J. Arbour,
C. Brown
Maintainer: J. Arbour <jarbour@uw.edu>
Diff between LOST versions 1.2 dated 2016-06-22 and 1.3 dated 2017-04-20
DESCRIPTION | 10 +++++----- MD5 | 10 ++++++---- NAMESPACE | 5 +++-- R/MissingGeoMorph.R | 13 ++++++------- R/align.missing.R | 11 +++++++---- R/flipped.R |only man/flipped.Rd |only 7 files changed, 27 insertions(+), 22 deletions(-)
Title: Framework for the Analysis of Genomic Prediction Data using R
Description: A collection of functions required for genomic prediction which were developed within the Synbreed project for synergistic plant and animal breeding (<http://www.synbreed.tum.de>). This covers data processing, data visualization, and analysis. All functions are embedded within the framework of a single, unified data object. The implementation is flexible with respect to a wide range of data formats in plant and animal breeding. This research was funded by the German Federal Ministry of Education and Research (BMBF) within the AgroClustEr Synbreed - Synergistic plant and animal breeding (FKZ 0315528A).
Author: Hans-Juergen Auinger, Valentin Wimmer, Theresa Albrecht, Chris-Carolin Schoen with contributions by Larry Schaeffer, Malena Erbe, Ulrike Ober, Christian Reimer, Yvonne Badke and Peter VandeHaar
Maintainer: Hans-Juergen Auinger <auinger@tum.de>
Diff between synbreed versions 0.12-4 dated 2017-04-06 and 0.12-5 dated 2017-04-20
DESCRIPTION | 12 ++++++------ MD5 | 20 ++++++++++---------- NEWS | 7 +++++++ R/codeGeno.r | 2 ++ R/read.write.vcf.r | 2 +- vignettes/figs/cattleHist.pdf |binary vignettes/figs/genMapCattle.pdf |binary vignettes/figs/genMapMaize.pdf |binary vignettes/figs/genMapMice.pdf |binary vignettes/figs/maizeHist.pdf |binary vignettes/figs/miceHist.pdf |binary 11 files changed, 26 insertions(+), 17 deletions(-)
Title: Fitting Step-Functions
Description: Allows to fit step-functions to univariate serial data where neither the number of jumps nor their positions is known.
Author: Timo Aspelmeier [cre, aut],
Thomas Hotz [aut],
Hannes Sieling [aut],
Pein Florian [ctb]
Maintainer: Timo Aspelmeier <timo.aspelmeier@mathematik.uni-goettingen.de>
Diff between stepR versions 1.0-6 dated 2016-10-17 and 1.0-7 dated 2017-04-20
ChangeLog | 10 + DESCRIPTION | 6 MD5 | 15 +- NAMESPACE | 12 + R/stepbound.R | 222 +++++++++++++++++----------------- R/stepcand.R | 376 +++++++++++++++++++++++++++++----------------------------- R/steppath.R | 326 +++++++++++++++++++++++++------------------------- src/Step.cpp | 319 +++++++++++++++++++++++++------------------------ src/init.c |only 9 files changed, 657 insertions(+), 629 deletions(-)
Title: R Interface to 'Bloomberg'
Description: An R Interface to 'Bloomberg' is provided via the 'Blp API'.
Author: Whit Armstrong, Dirk Eddelbuettel and John Laing
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rblpapi versions 0.3.5 dated 2016-10-25 and 0.3.6 dated 2017-04-20
ChangeLog | 69 +++++++++++ DESCRIPTION | 13 +- MD5 | 81 ++++++------- NAMESPACE | 39 +++--- R/RcppExports.R | 8 - R/bdh.R | 8 - R/bdp.R | 4 R/converters.R |only R/getBars.R | 15 +- R/getTicks.R | 8 - R/lookup.R |only README.md | 9 + build/vignette.rds |binary inst/NEWS.Rd | 20 +++ inst/doc/rblpapi-intro.html | 2 inst/unitTests/runit.bdh.R | 13 +- inst/unitTests/runit.examples.R | 6 inst/unitTests/runit.getTicks.R | 4 man/bdh.Rd | 14 +- man/bdp.Rd | 5 man/bds.Rd | 1 man/beqs.Rd | 1 man/blpAuthenticate.Rd | 1 man/blpConnect.Rd | 1 man/blpDisconnect.Rd | 1 man/bsrch.Rd | 1 man/defaultConnection.Rd | 1 man/fieldInfo.Rd | 1 man/fieldSearch.Rd | 1 man/getBars.Rd | 1 man/getHeaderVersion.Rd | 7 - man/getMultipleTicks.Rd | 1 man/getPortfolio.Rd | 1 man/getRuntimeVersion.Rd | 7 - man/getTicks.Rd | 1 man/lookupSecurity.Rd |only man/subscribe.Rd | 7 - src/RcppExports.cpp | 23 +++ src/bdh.cpp | 9 + src/bds.cpp | 246 ++++++++++++++++++++-------------------- src/blpapi_utils.cpp | 123 +++++++++----------- src/finalizers.h | 38 +----- src/init.c |only src/lookup.cpp |only 44 files changed, 457 insertions(+), 334 deletions(-)
Title: Selection of Linear Estimators
Description: Estimate the mean of a Gaussian vector, by choosing among a large collection of estimators. In particular it solves the problem of variable selection by choosing the best predictor among predictors emanating from different methods as lasso, elastic-net, adaptive lasso, pls, randomForest. Moreover, it can be applied for choosing the tuning parameter in a Gauss-lasso procedure.
Author: Yannick Baraud, Christophe Giraud, Sylvie Huet
Maintainer: Annie Bouvier <Annie.Bouvier@inra.fr>
Diff between LINselect versions 0.0-2 dated 2015-08-26 and 1.1 dated 2017-04-20
DESCRIPTION | 10 +++++----- MD5 | 23 ++++++++++++----------- R/VARselect.R | 9 ++++++++- R/functions.R | 6 ++++++ R/penalty.R | 6 ++++++ R/simulData.R | 7 +++++++ R/tuneLasso.R | 7 +++++++ demo/VARselect.R | 6 ++---- demo/tuneLasso.R | 6 ++---- inst/doc/Notice.pdf |binary inst/extdata |only tests/TestVARselect.Rout.save | 8 ++++---- tests/TesttuneLasso.Rout.save | 8 ++++---- 13 files changed, 63 insertions(+), 33 deletions(-)
Title: Robust Multiple Imputation with Generalized Additive Models for
Location Scale and Shape
Description: Provides new imputation methods for the 'mice' package based on generalized additive models for location, scale, and shape (GAMLSS) as described in de Jong, van Buuren and Spiess <doi:10.1080/03610918.2014.911894>.
Author: Daniel Salfran [aut, cre],
Martin Spiess [aut, ths]
Maintainer: Daniel Salfran <daniel.salfran@uni-hamburg.de>
Diff between ImputeRobust versions 1.1-1 dated 2017-02-27 and 1.1-2 dated 2017-04-20
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 6 ++++++ R/imp_gamlss_fit.R | 8 ++++---- man/ImpGamlssFit.Rd | 7 +++---- 5 files changed, 20 insertions(+), 15 deletions(-)
Title: Within Outlying Mean Indexes: Refining the OMI Analysis
Description: Complementary indexes calculation to the Outlying Mean Index analysis to explore niche shift of a community and biological constraint within an Euclidean space, with graphical displays.
Author: Stephane Karasiewicz
Maintainer: Stephane Karasiewicz <stephane.karasiewicz@wanadoo.fr>
Diff between subniche versions 0.9.4 dated 2017-03-29 and 0.9.6 dated 2017-04-20
DESCRIPTION | 9 +++--- MD5 | 11 +++++-- R/data.R |only R/subniche.R | 76 +++++++++++++++++++++++++++++++----------------------- data |only man/ardecheinv.Rd |only man/drome.Rd |only man/subniche.Rd | 12 ++++---- 8 files changed, 65 insertions(+), 43 deletions(-)
Title: Minimal Protein Set Explaining Peptide Spectrum Matches
Description: Determine minimal protein set explaining
peptide spectrum matches. Utility functions for creating libraries with decoys.
Planned is peptide FDR estimation for search results.
Author: Witold Wolski
Maintainer: Witold Wolski <wewolski@gmail.com>
Diff between prozor versions 0.1.1 dated 2015-09-05 and 0.2.3 dated 2017-04-20
prozor-0.1.1/prozor/data/pepdata.tab.gz |only prozor-0.1.1/prozor/data/protpepmetashort.tab |only prozor-0.1.1/prozor/man/pepdata.Rd |only prozor-0.2.3/prozor/DESCRIPTION | 19 prozor-0.2.3/prozor/MD5 | 72 prozor-0.2.3/prozor/NAMESPACE | 35 prozor-0.2.3/prozor/R/DeprecatedAnnotatePeptides.R |only prozor-0.2.3/prozor/R/annotatePeptides.R | 214 prozor-0.2.3/prozor/R/createDecoyDB.R |only prozor-0.2.3/prozor/R/greedy.R | 128 prozor-0.2.3/prozor/R/hello.R | 50 prozor-0.2.3/prozor/R/loadContaminantsFasta.R |only prozor-0.2.3/prozor/R/prepareMatrix.R | 107 prozor-0.2.3/prozor/R/readFasta.R |only prozor-0.2.3/prozor/R/removeSignalPeptides.R |only prozor-0.2.3/prozor/R/reverseSeq.R |only prozor-0.2.3/prozor/R/writeFasta.R |only prozor-0.2.3/prozor/R/zzz.R |only prozor-0.2.3/prozor/README.md | 65 prozor-0.2.3/prozor/data/datalist |only prozor-0.2.3/prozor/data/pepprot.tab.gz |only prozor-0.2.3/prozor/data/protpepmeta.tab.gz |binary prozor-0.2.3/prozor/data/protpepmetashort.tab.gz |only prozor-0.2.3/prozor/inst/creatingDBs |only prozor-0.2.3/prozor/inst/extdata/UnimodMappings.txt |only prozor-0.2.3/prozor/inst/extdata/fgcz_ContaminantsWithAnnotation.fasta |only prozor-0.2.3/prozor/inst/extdata/fgcz_ContaminantsWithAnnotationNoHuman.fasta |only prozor-0.2.3/prozor/inst/extdata/fgcz_contaminants_20130115_patchedWithRespectiveUniprot2.fasta |only prozor-0.2.3/prozor/inst/extdata/fgcz_contaminants_20150123.fasta |only prozor-0.2.3/prozor/inst/extdata/shortfasta.fasta | 5836 +++++----- prozor-0.2.3/prozor/inst/extdata/uniprot_signal_homo_sapiens_9606_23032016.tab.gz |only prozor-0.2.3/prozor/inst/extdata/uniprot_signal_mus_musculus_29032016.tab.gz |only prozor-0.2.3/prozor/inst/extdata/uniprot_taxonomy_Oryctolagus_cuniculus.fasta.gz |only prozor-0.2.3/prozor/man/annotateAHO.Rd |only prozor-0.2.3/prozor/man/annotatePeptides.Rd | 69 prozor-0.2.3/prozor/man/annotateVec.Rd |only prozor-0.2.3/prozor/man/createDecoyDB.Rd |only prozor-0.2.3/prozor/man/filterSequences.Rd |only prozor-0.2.3/prozor/man/greedy.Rd | 56 prozor-0.2.3/prozor/man/greedyRes2Matrix.Rd |only prozor-0.2.3/prozor/man/loadContaminantsFasta.Rd |only prozor-0.2.3/prozor/man/loadContaminantsNoHumanFasta.Rd |only prozor-0.2.3/prozor/man/loadHomoSapiensSignalPeptides.Rd |only prozor-0.2.3/prozor/man/loadMusMusculusSignalPeptides.Rd |only prozor-0.2.3/prozor/man/makeID.Rd |only prozor-0.2.3/prozor/man/makeIDUnip.Rd |only prozor-0.2.3/prozor/man/pepprot.Rd |only prozor-0.2.3/prozor/man/prepareMatrix.Rd | 84 prozor-0.2.3/prozor/man/protpepmeta.Rd | 21 prozor-0.2.3/prozor/man/protpepmetashort.Rd | 21 prozor-0.2.3/prozor/man/prozor.Rd | 21 prozor-0.2.3/prozor/man/readPeptideFasta.Rd |only prozor-0.2.3/prozor/man/removeSignalPeptide.Rd |only prozor-0.2.3/prozor/man/reverseSeq.Rd |only prozor-0.2.3/prozor/man/writeFasta.Rd |only 55 files changed, 3450 insertions(+), 3348 deletions(-)
Title: Dot-and-Whisker Plots of Regression Results
Description: Quick and easy dot-and-whisker plots of regression results.
Author: Frederick Solt [aut],
Yue Hu [aut, cre],
Oliver Keyes [ctb],
Ben Bolker [ctb],
Stefan Müller [ctb]
Maintainer: Yue Hu <yue-hu-1@uiowa.edu>
Diff between dotwhisker versions 0.2.5 dated 2017-04-06 and 0.2.6 dated 2017-04-20
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS.md | 3 +++ R/relabel_predictors.R | 3 +++ inst/doc/dotwhisker-vignette.R | 2 ++ inst/doc/dotwhisker-vignette.Rmd | 2 ++ inst/doc/dotwhisker-vignette.html | 6 +++--- inst/doc/kl2007_examples.html | 4 ++-- vignettes/dotwhisker-vignette.Rmd | 2 ++ 10 files changed, 31 insertions(+), 18 deletions(-)
Title: Validation Tools for Artificial Neural Networks
Description: Methods and tools for analysing and validating the outputs
and modelled functions of artificial neural networks (ANNs) in terms
of predictive, replicative and structural validity. Also provides a
method for fitting feed-forward ANNs with a single hidden layer.
Author: Greer B. Humphrey [aut, cre]
Maintainer: Greer B. Humphrey <greer.humphrey@student.adelaide.edu.au>
Diff between validann versions 1.2.0 dated 2016-11-16 and 1.2.1 dated 2017-04-20
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/CITATION | 27 +++++++++++++++++++-------- 3 files changed, 24 insertions(+), 13 deletions(-)
Title: Calculation of the Integrated Flow of Particles Between Polygons
Description: Calculate the flow of particles between polygons by two integration methods: integration by a cubature method and integration on a grid of points.
Author: Annie Bouvier, Kien Kieu, Kasia Adamczyk, and Herve Monod
Maintainer: Annie Bouvier <Annie.Bouvier@inra.fr>
Diff between RCALI versions 0.2-17 dated 2016-09-21 and 0.2-18 dated 2017-04-20
RCALI-0.2-17/RCALI/.Rinstignore |only RCALI-0.2-17/RCALI/inst/doc/RCALIvignette.pdf |only RCALI-0.2-17/RCALI/inst/doc/RCALIvignette.tex |only RCALI-0.2-17/RCALI/inst/doc/VignetteDir |only RCALI-0.2-18/RCALI/DESCRIPTION | 10 - RCALI-0.2-18/RCALI/MD5 | 150 ++++++------------------ RCALI-0.2-18/RCALI/NAMESPACE | 6 RCALI-0.2-18/RCALI/NEWS | 11 + RCALI-0.2-18/RCALI/R/califlopp.R | 4 RCALI-0.2-18/RCALI/inst/doc/Guide.pdf |only RCALI-0.2-18/RCALI/inst/doc/index.html | 2 RCALI-0.2-18/RCALI/man/RCALI-package.Rd | 11 - RCALI-0.2-18/RCALI/man/califlopp.Rd | 2 RCALI-0.2-18/RCALI/src/Adapt.cc | 27 +++- RCALI-0.2-18/RCALI/src/PileTr.cc | 27 +++- RCALI-0.2-18/RCALI/src/Point.cc | 27 +++- RCALI-0.2-18/RCALI/src/Rule.cc | 27 +++- RCALI-0.2-18/RCALI/src/Triangle.cc | 27 +++- RCALI-0.2-18/RCALI/src/Vector.cc | 26 +++- RCALI-0.2-18/RCALI/src/caliconfig.h | 2 RCALI-0.2-18/RCALI/src/crConvexSp.cc | 26 +++- RCALI-0.2-18/RCALI/src/fluxsd.cc | 79 +++++++----- RCALI-0.2-18/RCALI/src/functions.cc | 27 +++- RCALI-0.2-18/RCALI/src/geom.cc | 27 +++- RCALI-0.2-18/RCALI/src/go.cc | 27 +++- RCALI-0.2-18/RCALI/src/intersection.cc | 26 +++- RCALI-0.2-18/RCALI/src/main.cc | 58 ++++++++- RCALI-0.2-18/RCALI/src/methodAdapt.cc | 41 ++++-- RCALI-0.2-18/RCALI/src/methodGrid.cc | 42 ++++-- RCALI-0.2-18/RCALI/src/quantiles.cc | 27 +++- RCALI-0.2-18/RCALI/src/read1Poly.cc | 36 ++++- RCALI-0.2-18/RCALI/src/readPoly.cc | 35 ++++- RCALI-0.2-18/RCALI/src/util.cc | 27 +++- RCALI-0.2-18/RCALI/src/writeDebug.cc | 27 +++- RCALI-0.2-18/RCALI/src/zoneintegration.cc | 26 +++- RCALI-0.2-18/RCALI/tests/cte.Rout.save | 2 RCALI-0.2-18/RCALI/tests/data |only RCALI-0.2-18/RCALI/tests/data.R |only RCALI-0.2-18/RCALI/tests/data.Rout.save |only RCALI-0.2-18/RCALI/tests/data.txt |only RCALI-0.2-18/RCALI/tests/data2 |only RCALI-0.2-18/RCALI/tests/disppollen.Rout.save | 2 RCALI-0.2-18/RCALI/tests/dispseed.Rout.save | 2 RCALI-0.2-18/RCALI/tests/fdispersions.Rout.save | 2 44 files changed, 650 insertions(+), 248 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible framework for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre, cph],
Kohei Watanabe [ctb],
Paul Nulty [ctb],
Adam Obeng [ctb],
Haiyan Wang [ctb],
Benjamin Lauderdale [ctb],
Will Lowe [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.9.9-24 dated 2017-02-13 and 0.9.9-50 dated 2017-04-20
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Title: Testing Workbench for Precision-Recall Curves
Description: A testing workbench for evaluating precision-recall curves under various conditions.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between prcbench versions 0.6.2 dated 2016-11-22 and 0.7.3 dated 2017-04-20
DESCRIPTION | 10 +++--- MD5 | 64 +++++++++++++++++++-------------------- NAMESPACE | 1 NEWS.md | 4 ++ R/g_autoplot.R | 2 - R/main_evalcurves.R | 27 ++++++++++++++-- R/prcbench.R | 1 R/tool_zzz.R | 2 - README.md | 18 +++++----- build/vignette.rds |binary inst/CITATION | 8 +++- inst/doc/introduction.html | 24 +++++++------- man/C1DATA.Rd | 1 man/C2DATA.Rd | 1 man/C3DATA.Rd | 1 man/C4DATA.Rd | 1 man/TestDataB.Rd | 2 - man/TestDataC.Rd | 2 - man/ToolAUCCalculator.Rd | 4 +- man/ToolIFBase.Rd | 2 - man/ToolPRROC.Rd | 2 - man/ToolPerfMeas.Rd | 2 - man/ToolROCR.Rd | 2 - man/Toolprecrec.Rd | 2 - man/autoplot.Rd | 3 - man/create_example_func.Rd | 1 man/create_testset.Rd | 1 man/create_toolset.Rd | 1 man/create_usrdata.Rd | 1 man/create_usrtool.Rd | 1 man/run_benchmark.Rd | 1 man/run_evalcurve.Rd | 1 tests/testthat/test_tool_prroc.R | 23 +++++++++++--- 33 files changed, 122 insertions(+), 94 deletions(-)
More information about PortfolioOptim at CRAN
Permanent link
Title: 'Markdown' Rendering for R
Description: Provides R bindings to the 'Sundown' 'Markdown' rendering library
(https://github.com/vmg/sundown). 'Markdown' is a plain-text formatting
syntax that can be converted to 'XHTML' or other formats. See
http://en.wikipedia.org/wiki/Markdown for more information about 'Markdown'.
Author: JJ Allaire [aut],
Jeffrey Horner [aut],
Henrik Bengtsson [ctb],
Jim Hester [ctb],
Yixuan Qiu [ctb],
Kohske Takahashi [ctb],
Adam November [ctb],
Nacho Caballero [ctb],
Jeroen Ooms [ctb],
Thomas Leeper [ctb],
Joe Cheng [ctb],
Andrzej Oles [ctb],
Vicent Marti [aut, cph] (The Sundown library),
Natacha Porte [aut, cph] (The Sundown library),
RStudio [cph],
Yihui Xie [cre, ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between markdown versions 0.7.7 dated 2015-04-22 and 0.8 dated 2017-04-20
DESCRIPTION | 54 ++++++++++++++++++++++++++++++------- MD5 | 50 +++++++++++++++++----------------- NAMESPACE | 3 ++ NEWS | 11 +++++++ R/renderMarkdown.R | 8 ++--- build/vignette.rds |binary inst/doc/markdown-examples.R | 4 +- inst/doc/markdown-examples.html | 8 ++--- inst/doc/markdown-output.R | 4 +- inst/doc/markdown-output.html | 8 ++--- inst/examples/markdownExtensions.R | 4 +- inst/resources/mathjax.html | 2 - man/markdown.Rd | 7 ++-- man/markdownExtensions.Rd | 36 +++++++++++++++--------- man/markdownHTMLOptions.Rd | 6 ++-- man/markdownToHTML.Rd | 1 man/registeredRenderers.Rd | 1 man/renderMarkdown.Rd | 1 man/rendererExists.Rd | 1 man/rendererOutputType.Rd | 1 man/rpubsUpload.Rd | 1 man/smartypants.Rd | 1 src/Rbase64.c | 17 ++++++++--- src/Rinit.c | 7 ++-- tests/b64EncodeFile.R |only tests/empty.R |only tests/tests.Rout.save | 17 ++++++----- 27 files changed, 166 insertions(+), 87 deletions(-)
Title: Multilevel Modeling of Dendroclimatical Fluctuations
Description: Multilevel ecological data series (MEDS) are sequences of observations ordered according to temporal/spatial hierarchies that are defined by sample designs, with sample variability confined to ecological factors. Dendroclimatic MEDS of tree rings and climate are modeled into normalized fluctuations of tree growth and aridity. Modeled fluctuations (model frames) are compared with Mantel correlograms on multiple levels defined by sample design. Package implementation can be understood by running examples in modelFrame(), and muleMan() functions.
Author: Wilson Lara <wilarhen@gmail.com>, Felipe Bravo <fbravo@pvs.uva.es>
Maintainer: Wilson Lara <wilarhen@gmail.com>
Diff between BIOdry versions 0.4 dated 2017-01-17 and 0.5 dated 2017-04-20
BIOdry-0.4/BIOdry/R/R |only BIOdry-0.4/BIOdry/R/colclass.R |only BIOdry-0.4/BIOdry/R/splitFrame.R |only BIOdry-0.4/BIOdry/man/colclass.Rd |only BIOdry-0.4/BIOdry/man/splitFrame.Rd |only BIOdry-0.5/BIOdry/DESCRIPTION | 8 BIOdry-0.5/BIOdry/MD5 | 111 ++++++------ BIOdry-0.5/BIOdry/NAMESPACE | 9 - BIOdry-0.5/BIOdry/NEWS | 32 +++ BIOdry-0.5/BIOdry/R/amod.R | 191 ++++++++++------------ BIOdry-0.5/BIOdry/R/anova.modelFrame.R |only BIOdry-0.5/BIOdry/R/arguSelect.R | 36 ++-- BIOdry-0.5/BIOdry/R/cClass.R |only BIOdry-0.5/BIOdry/R/frametoLme.R | 49 ++--- BIOdry-0.5/BIOdry/R/levexp.R | 12 - BIOdry-0.5/BIOdry/R/lmeForm.R | 8 BIOdry-0.5/BIOdry/R/mUnits.R |only BIOdry-0.5/BIOdry/R/modelFrame.R | 205 ++++++++++++++--------- BIOdry-0.5/BIOdry/R/moveYr.R | 41 +++- BIOdry-0.5/BIOdry/R/muleMan.R | 242 +++++++++++++--------------- BIOdry-0.5/BIOdry/R/plot.modelFrame.R |only BIOdry-0.5/BIOdry/R/plot.muleMan.R |only BIOdry-0.5/BIOdry/R/plot.wlai.R |only BIOdry-0.5/BIOdry/R/ringApply.R | 76 ++++++-- BIOdry-0.5/BIOdry/R/rtimes.R | 5 BIOdry-0.5/BIOdry/R/scacum.R | 80 ++++----- BIOdry-0.5/BIOdry/R/shiftFrame.R | 233 +++++++++++++++----------- BIOdry-0.5/BIOdry/R/slitFrame.R |only BIOdry-0.5/BIOdry/R/summary.modelFrame.R |only BIOdry-0.5/BIOdry/R/tdForm.R | 34 ++- BIOdry-0.5/BIOdry/R/wlai.R | 66 ++----- BIOdry-0.5/BIOdry/build/partial.rdb |binary BIOdry-0.5/BIOdry/data/Pchron.RData |only BIOdry-0.5/BIOdry/data/Prec.RData |only BIOdry-0.5/BIOdry/data/Temp.RData |only BIOdry-0.5/BIOdry/man/BIOdry-package.Rd | 5 BIOdry-0.5/BIOdry/man/PTclim05.Rd | 24 +- BIOdry-0.5/BIOdry/man/Pchron.Rd |only BIOdry-0.5/BIOdry/man/Pradii03.Rd | 29 +-- BIOdry-0.5/BIOdry/man/Prec.Rd |only BIOdry-0.5/BIOdry/man/Prings05.Rd | 43 ++-- BIOdry-0.5/BIOdry/man/Temp.Rd |only BIOdry-0.5/BIOdry/man/amod.Rd | 89 ++++------ BIOdry-0.5/BIOdry/man/anova.modelFrame.Rd |only BIOdry-0.5/BIOdry/man/arguSelect.Rd | 28 ++- BIOdry-0.5/BIOdry/man/cClass.Rd |only BIOdry-0.5/BIOdry/man/frametoLme.Rd | 38 +--- BIOdry-0.5/BIOdry/man/levexp.Rd | 8 BIOdry-0.5/BIOdry/man/mUnits.Rd |only BIOdry-0.5/BIOdry/man/modelFrame.Rd | 146 ++++++++-------- BIOdry-0.5/BIOdry/man/moveYr.Rd | 6 BIOdry-0.5/BIOdry/man/muleMan.Rd | 100 ++++------- BIOdry-0.5/BIOdry/man/plot.modelFrame.Rd |only BIOdry-0.5/BIOdry/man/plot.muleMan.Rd |only BIOdry-0.5/BIOdry/man/plot.wlai.Rd |only BIOdry-0.5/BIOdry/man/ringApply.Rd | 49 +++-- BIOdry-0.5/BIOdry/man/scacum.Rd | 33 +-- BIOdry-0.5/BIOdry/man/shiftFrame.Rd | 87 ++++------ BIOdry-0.5/BIOdry/man/slitFrame.Rd |only BIOdry-0.5/BIOdry/man/summary.modelFrame.Rd |only BIOdry-0.5/BIOdry/man/tdForm.Rd | 32 +-- BIOdry-0.5/BIOdry/man/wlai.Rd | 6 62 files changed, 1125 insertions(+), 1036 deletions(-)
Title: Import, Manipulate and Explore the Results of an Antares
Simulation
Description: Import, manipulate and explore results generated by Antares, a
powerful software developed by RTE to simulate and study electric power systems
(more information about Antares here: <https://antares.rte-france.com>).
Author: Francois Guillem [aut, cre],
Jalal-Edine ZAWAM [ctb],
RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between antaresRead versions 1.1.1 dated 2017-04-03 and 1.1.2 dated 2017-04-20
DESCRIPTION | 18 +++++++++--------- MD5 | 8 ++++---- NEWS | 5 +++++ build/vignette.rds |binary tests/testthat/helper_init.R | 12 ++++++++---- 5 files changed, 26 insertions(+), 17 deletions(-)
Title: Antares Results Processing
Description:
Process results generated by Antares, a powerful software developed by
RTE to simulate and study electric power systems (more information about
Antares here: <https://antares.rte-france.com>). This package provides
functions to create new columns like net load, load factors, upward and
downward margins or to compute aggregated statistics like economic surpluses
of consumers, producers and sectors.
Author: Francois Guillem [aut, cre],
Jalal-Edine ZAWAM [ctb],
RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between antaresProcessing versions 0.10.0 dated 2017-04-06 and 0.10.1 dated 2017-04-20
DESCRIPTION | 18 +++++++++--------- MD5 | 4 ++-- tests/testthat/helper_init.R | 12 ++++++++---- 3 files changed, 19 insertions(+), 15 deletions(-)
More information about antaresProcessing at CRAN
Permanent link
Title: Tools for ABC Analyses
Description: Tools for approximate Bayesian computation including summary statistic selection and assessing coverage.
Author: Matt Nunes [aut, cre],
Dennis Prangle [aut],
Guilhereme Rodrigues [ctb]
Maintainer: Matt Nunes <m.nunes@lancaster.ac.uk>
Diff between abctools versions 1.0.4 dated 2016-01-14 and 1.1.1 dated 2017-04-20
DESCRIPTION | 17 ++++++++++------- MD5 | 27 +++++++++++++++------------ NAMESPACE | 5 +++-- R/AS.select.R | 9 +++++++++ R/AS.test.R | 8 ++++---- R/cov.pi.R | 37 +++++++++++++++++++------------------ R/mincrit.R | 9 +++++++++ R/nn.ent.R | 5 ++--- R/recalibration.R |only R/selectsumm.R | 10 ++++++++++ R/semiauto.abc.R | 9 +++++++++ R/stage2.R | 9 +++++++++ man/abctools-package.Rd | 4 ++-- man/recalibrationABC.Rd |only src/abctools.c | 1 - src/init.c |only 16 files changed, 101 insertions(+), 49 deletions(-)
Title: A Multivariate Emulator
Description: A multivariate generalization of the emulator package.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between multivator versions 1.1-4 dated 2013-12-05 and 1.1-6 dated 2017-04-20
DESCRIPTION | 16 ++++++++-------- MD5 | 32 ++++++++++++++++---------------- NAMESPACE | 10 ++++++++++ R/aaa_multivator.R | 18 ++++++++++++++++-- build/vignette.rds |binary data/e3mg.rda |binary data/mcneall.rda |binary data/mtoys.rda |binary inst/doc/cias.pdf |binary inst/doc/multivator.R | 2 +- inst/doc/multivator.Rnw | 4 ++-- inst/doc/multivator.pdf |binary man/apart.Rd | 2 -- man/ipd.Rd | 6 ++---- man/mcneall.Rd | 2 +- man/showmap.Rd | 13 ++++++++----- vignettes/multivator.Rnw | 4 ++-- 17 files changed, 66 insertions(+), 43 deletions(-)