Title: Taxonomic Information from 'Wikipedia'
Description: 'Taxonomic' information from 'Wikipedia', 'Wikicommons',
'Wikispecies', and 'Wikidata'. Functions included for getting
taxonomic information from each of the sources just listed, as
well performing taxonomic search.
Author: Scott Chamberlain [aut, cre],
Ethan Welty [aut]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between wikitaxa versions 0.1.0 dated 2017-04-03 and 0.1.4 dated 2017-05-05
DESCRIPTION | 8 - MD5 | 47 +++--- NEWS.md | 13 + R/globals.R |only R/wikicommons.R | 3 R/wikipedia.R | 22 ++- R/wikispecies.R | 3 R/wikitaxa-package.R | 16 ++ README.md | 63 +++++---- build/vignette.rds |binary data |only inst/doc/wikitaxa_vignette.R | 20 ++ inst/doc/wikitaxa_vignette.Rmd | 37 +++++ inst/doc/wikitaxa_vignette.html | 215 +++++++++++++++++++++++++------- man/wikipedias.Rd |only man/wt_wikicommons.Rd | 2 man/wt_wikipedia.Rd | 14 +- man/wt_wikispecies.Rd | 2 tests/testthat/test-wikicommons.R | 10 + tests/testthat/test-wikipedia.R | 18 ++ tests/testthat/test-wikispecies.R | 10 + tests/testthat/test-wt_data.R | 2 tests/testthat/test-wt_wiki_page.R | 6 tests/testthat/test-wt_wiki_url_build.R | 4 tests/testthat/test-wt_wiki_url_parse.R | 4 vignettes/wikitaxa_vignette.Rmd | 37 +++++ 26 files changed, 448 insertions(+), 108 deletions(-)
Title: Actuarial Functions and Heavy Tailed Distributions
Description: Functions and data sets for actuarial science:
modeling of loss distributions; risk theory and ruin theory;
simulation of compound models, discrete mixtures and compound
hierarchical models; credibility theory. Support for many additional
probability distributions to model insurance loss amounts and loss
frequency: 19 continuous heavy tailed distributions; the
Poisson-inverse Gaussian discrete distribution; zero-truncated and
zero-modified extensions of the standard discrete distributions.
Support for phase-type distributions commonly used to compute ruin
probabilities.
Author: Vincent Goulet [cre, aut],
Sébastien Auclair [ctb],
Christophe Dutang [aut],
Xavier Milhaud [ctb],
Tommy Ouellet [ctb],
Louis-Philippe Pouliot [ctb],
Mathieu Pigeon [aut]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between actuar versions 2.1-0 dated 2017-02-09 and 2.1-1 dated 2017-05-05
DESCRIPTION | 8 +- MD5 | 143 +++++++++++++++++++------------------- NAMESPACE | 2 R/BetaMoments.R | 4 - R/Burr.R | 12 +-- R/ChisqSupp.R | 6 - R/ExponentialSupp.R | 6 - R/GammaSupp.R | 6 - R/GeneralizedBeta.R | 12 +-- R/GeneralizedPareto.R | 12 +-- R/Gumbel.R | 12 +-- R/InverseBurr.R | 12 +-- R/InverseExponential.R | 12 +-- R/InverseGamma.R | 14 +-- R/InverseGaussian.R | 20 ++--- R/InverseParalogistic.R | 12 +-- R/InversePareto.R | 12 +-- R/InverseTransformedGamma.R | 12 +-- R/InverseWeibull.R | 12 +-- R/Logarithmic.R | 8 +- R/Loggamma.R | 12 +-- R/Loglogistic.R | 12 +-- R/LognormalMoments.R | 4 - R/NormalSupp.R | 4 - R/Paralogistic.R | 12 +-- R/Pareto.R | 12 +-- R/PhaseType.R | 10 +- R/PoissonInverseGaussian.R | 8 +- R/SingleParameterPareto.R | 12 +-- R/TransformedBeta.R | 12 +-- R/TransformedGamma.R | 12 +-- R/UniformSupp.R | 6 - R/WeibullMoments.R | 4 - R/ZeroModifiedBinomial.R | 8 +- R/ZeroModifiedGeometric.R | 8 +- R/ZeroModifiedLogarithmic.R | 8 +- R/ZeroModifiedNegativeBinomial.R | 8 +- R/ZeroModifiedPoisson.R | 8 +- R/ZeroTruncatedBinomial.R | 8 +- R/ZeroTruncatedGeometric.R | 8 +- R/ZeroTruncatedNegativeBinomial.R | 8 +- R/ZeroTruncatedPoisson.R | 8 +- R/betaint.R | 2 R/hierarc.R | 2 R/panjer.R | 2 inst/NEWS.Rd | 12 +++ inst/doc/actuar.R | 4 - inst/doc/actuar.Rnw | 17 ++-- inst/doc/actuar.pdf |binary inst/doc/coverage.pdf |binary inst/doc/credibility.R | 26 +++--- inst/doc/credibility.Rnw | 17 ++-- inst/doc/credibility.pdf |binary inst/doc/distributions.Rnw | 5 - inst/doc/distributions.pdf |binary inst/doc/modeling.R | 74 +++++++++---------- inst/doc/modeling.Rnw | 18 ++-- inst/doc/modeling.pdf |binary inst/doc/risk.R | 50 ++++++------- inst/doc/risk.Rnw | 17 ++-- inst/doc/risk.pdf |binary inst/doc/simulation.R | 36 ++++----- inst/doc/simulation.Rnw | 17 ++-- inst/doc/simulation.pdf |binary src/Makevars | 5 + src/actuar-win.def |only src/init.c | 6 + vignettes/actuar.Rnw | 17 ++-- vignettes/credibility.Rnw | 17 ++-- vignettes/distributions.Rnw | 5 - vignettes/modeling.Rnw | 18 ++-- vignettes/risk.Rnw | 17 ++-- vignettes/simulation.Rnw | 17 ++-- 73 files changed, 480 insertions(+), 450 deletions(-)
Title: Format Significance Summaries for Reports
Description: Succinctly format significance summaries of
various models and tests (F-test, Chi-Sq-test, Fisher-test, T-test, and rank-significance). The main purpose is unified reporting and planning
of experimental results, working around issue such as the difficulty of
extracting model summary facts (such as with 'lm'/'glm'). This package also
includes empirical tests, such as bootstrap estimates.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 0.1.5 dated 2017-03-24 and 0.1.6 dated 2017-05-05
DESCRIPTION | 10 +-- MD5 | 64 ++++++++++----------- NEWS.md | 7 ++ R/AUCTest.R | 37 +++++++----- R/ChiSqTest.R | 21 +++++-- R/CorTest.R | 21 +++++-- R/EmpiricalFns.R | 101 +++++++++++++++++++++++++++++----- R/FTest.R | 28 ++++++--- R/FisherTest.R | 22 +++++-- R/TTest.R | 21 +++++-- R/fns.R | 45 +++++++++++++-- R/sigr.R | 2 inst/doc/lmExample.html | 8 +- inst/doc/sigrFormatting.R | 2 inst/doc/sigrFormatting.Rmd | 2 inst/doc/sigrFormatting.html | 20 ++++-- man/calcAUC.Rd | 4 + man/calcDeviance.Rd | 6 +- man/calcSSE.Rd | 4 + man/estimateDifferenceZeroCrossing.Rd | 4 + man/permTestAUC.Rd | 6 +- man/permutationScoreModel.Rd | 4 + man/resampleScoreModel.Rd | 6 +- man/resampleScoreModelPair.Rd | 6 +- man/resampleTestAUC.Rd | 6 +- man/sigr.Rd | 2 man/testAUCpair.Rd | 4 + man/wrapChiSqTest.data.frame.Rd | 4 + man/wrapCorTest.data.frame.Rd | 7 +- man/wrapFTest.data.frame.Rd | 6 +- man/wrapFisherTest.data.frame.Rd | 7 +- man/wrapTTest.data.frame.Rd | 7 +- vignettes/sigrFormatting.Rmd | 2 33 files changed, 363 insertions(+), 133 deletions(-)
Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications
as things that can be generated and manipulated programmatically.
Structural equation models may be specified with reticular action model matrices or paths,
linear structural relations matrices or paths, or
directly in matrix algebra.
Fit functions include full information maximum likelihood,
maximum likelihood, and weighted least squares.
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
equations, state space, and many others.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb],
Charles Driver [ctb],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Association for Computing Machinery [cph],
Dieter Kraft [cph],
Stefan Wilhelm [cph],
Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.7.10 dated 2017-04-14 and 2.7.11 dated 2017-05-05
OpenMx-2.7.10/OpenMx/inst/models/failing/BivariateSaturated_WLSMatrixCov.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/ComputeOrderError.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/ExtraOrdinalVars.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/NTF_design.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/NameParameterOverlap.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/PPML_100days.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/UnivariateTwinAnalysis20090925.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/categoricalDefinitionTest.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/challengingCI.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/fail_on_re-run_entity_already_exists.R |only OpenMx-2.7.10/OpenMx/inst/models/failing/thresholdModel1Factor3Variate5000.R |only OpenMx-2.7.11/OpenMx/DESCRIPTION | 8 OpenMx-2.7.11/OpenMx/MD5 | 161 ++--- OpenMx-2.7.11/OpenMx/NAMESPACE | 4 OpenMx-2.7.11/OpenMx/NEWS | 3 OpenMx-2.7.11/OpenMx/R/MxCompute.R | 129 ++++ OpenMx-2.7.11/OpenMx/R/MxData.R | 67 +- OpenMx-2.7.11/OpenMx/R/MxDataWLS.R | 9 OpenMx-2.7.11/OpenMx/R/MxEval.R | 78 ++ OpenMx-2.7.11/OpenMx/R/MxExpectationBA81.R | 11 OpenMx-2.7.11/OpenMx/R/MxModel.R | 10 OpenMx-2.7.11/OpenMx/R/MxRAMModel.R | 2 OpenMx-2.7.11/OpenMx/R/MxRun.R | 37 + OpenMx-2.7.11/OpenMx/R/MxSE.R | 41 - OpenMx-2.7.11/OpenMx/R/MxSummary.R | 172 ++++- OpenMx-2.7.11/OpenMx/R/MxTryHard.R | 14 OpenMx-2.7.11/OpenMx/R/MxTypes.R | 2 OpenMx-2.7.11/OpenMx/R/MxVersion.R | 2 OpenMx-2.7.11/OpenMx/R/sysdata.rda |binary OpenMx-2.7.11/OpenMx/configure | 6 OpenMx-2.7.11/OpenMx/inst/CITATION | 2 OpenMx-2.7.11/OpenMx/inst/models/codeRed |only OpenMx-2.7.11/OpenMx/inst/models/failing/All_models_that_seem_fine |only OpenMx-2.7.11/OpenMx/inst/models/failing/CSOLNPmtcars.R | 42 - OpenMx-2.7.11/OpenMx/inst/models/failing/OrdinalLargeSample.R | 67 +- OpenMx-2.7.11/OpenMx/inst/models/failing/SimpleConfidenceIntervals.R | 135 +--- OpenMx-2.7.11/OpenMx/inst/models/failing/lacks_mention_of_what_fails |only OpenMx-2.7.11/OpenMx/inst/models/failing/no_longer_able_to_be_run |only OpenMx-2.7.11/OpenMx/inst/models/failing/thresholdsCross.R | 28 OpenMx-2.7.11/OpenMx/inst/models/passing/AlgebraComputePassing.R | 4 OpenMx-2.7.11/OpenMx/inst/models/passing/IntroSEM-BivariateRaw.R | 34 + OpenMx-2.7.11/OpenMx/inst/models/passing/JointFIMLRegressionTest.R | 5 OpenMx-2.7.11/OpenMx/inst/models/passing/MxTryHardTest.R | 17 OpenMx-2.7.11/OpenMx/inst/models/passing/NameParameterOverlap.R |only OpenMx-2.7.11/OpenMx/inst/models/passing/OrdinalTest.R | 8 OpenMx-2.7.11/OpenMx/inst/models/passing/SaturatedWLSTest.R | 3 OpenMx-2.7.11/OpenMx/inst/models/passing/SimpleAlgebraCIs.R | 19 OpenMx-2.7.11/OpenMx/inst/models/passing/SimpleConfidenceIntervals.R | 1 OpenMx-2.7.11/OpenMx/inst/models/passing/bivLognormDemo.R | 17 OpenMx-2.7.11/OpenMx/inst/models/passing/checkStandardizedLoadingsEtcetera.R | 30 - OpenMx-2.7.11/OpenMx/inst/models/passing/ifa-drm1.R | 12 OpenMx-2.7.11/OpenMx/inst/models/passing/ifa-grm1.R | 11 OpenMx-2.7.11/OpenMx/inst/models/passing/rfitfunc.R | 7 OpenMx-2.7.11/OpenMx/inst/models/passing/startingValues.R | 4 OpenMx-2.7.11/OpenMx/inst/models/passing/stdizedRAMpaths--UserProvidedCov.R |only OpenMx-2.7.11/OpenMx/inst/models/passing/thresholdModel1Factor3Variate5000.R |only OpenMx-2.7.11/OpenMx/man/mxBootstrap.Rd |only OpenMx-2.7.11/OpenMx/man/mxBootstrapEval.Rd |only OpenMx-2.7.11/OpenMx/man/mxComputeBootstrap.Rd |only OpenMx-2.7.11/OpenMx/man/mxData.Rd | 11 OpenMx-2.7.11/OpenMx/man/mxExpectationBA81.Rd | 11 OpenMx-2.7.11/OpenMx/man/mxSE.Rd | 6 OpenMx-2.7.11/OpenMx/man/mxStandardizeRAMpaths.Rd | 7 OpenMx-2.7.11/OpenMx/man/summary.MxModel.Rd | 76 ++ OpenMx-2.7.11/OpenMx/man/twinData.Rd | 17 OpenMx-2.7.11/OpenMx/src/Compute.cpp | 293 +++++++++- OpenMx-2.7.11/OpenMx/src/Compute.h | 10 OpenMx-2.7.11/OpenMx/src/ComputeGD.cpp | 24 OpenMx-2.7.11/OpenMx/src/finiteDifferences.h | 44 - OpenMx-2.7.11/OpenMx/src/nloptcpp.cpp | 4 OpenMx-2.7.11/OpenMx/src/omxData.cpp | 54 + OpenMx-2.7.11/OpenMx/src/omxData.h | 11 OpenMx-2.7.11/OpenMx/src/omxDefines.h | 1 OpenMx-2.7.11/OpenMx/src/omxExpectation.h | 3 OpenMx-2.7.11/OpenMx/src/omxExpectationBA81.cpp | 40 - OpenMx-2.7.11/OpenMx/src/omxExpectationBA81.h | 1 OpenMx-2.7.11/OpenMx/src/omxFIMLFitFunction.cpp | 33 - OpenMx-2.7.11/OpenMx/src/omxFIMLFitFunction.h | 12 OpenMx-2.7.11/OpenMx/src/omxFitFunction.h | 1 OpenMx-2.7.11/OpenMx/src/omxGREMLExpectation.cpp | 68 -- OpenMx-2.7.11/OpenMx/src/omxGREMLExpectation.h | 69 ++ OpenMx-2.7.11/OpenMx/src/omxHessianCalculation.cpp | 59 +- OpenMx-2.7.11/OpenMx/src/omxMatrix.h | 24 OpenMx-2.7.11/OpenMx/src/omxRAMExpectation.cpp | 8 OpenMx-2.7.11/OpenMx/src/omxState.cpp | 12 OpenMx-2.7.11/OpenMx/src/omxState.h | 1 OpenMx-2.7.11/OpenMx/src/omxWLSFitFunction.cpp | 11 OpenMx-2.7.11/OpenMx/src/slsqp.c | 2 OpenMx-2.7.11/OpenMx/src/subnp.cpp | 2 89 files changed, 1540 insertions(+), 577 deletions(-)
Title: Portmanteau Tests for Univariate and Multivariate Time Series
Models
Description: Simulate a univariate/multivariate data from seasonal and nonseasonal time series models. It implements the well-known univariate and multivariate portmanteau test statistics based on the asymptotic distributions and the Monte-Carlo significance tests.
Author: Esam Mahdi and A. Ian McLeod
Maintainer: Esam Mahdi <emahdi@iugaza.edu.ps>
Diff between portes versions 2.1-3 dated 2014-08-08 and 2.1-4 dated 2017-05-05
portes-2.1-3/portes/R/gvtest.r |only portes-2.1-3/portes/inst/doc/portesPower.pdf |only portes-2.1-3/portes/man/gvtest.Rd |only portes-2.1-4/portes/DESCRIPTION | 23 portes-2.1-4/portes/MD5 | 78 +- portes-2.1-4/portes/NAMESPACE | 15 portes-2.1-4/portes/R/BoxPierce.R | 38 - portes-2.1-4/portes/R/GetResiduals.R | 42 - portes-2.1-4/portes/R/Hosking.R | 39 - portes-2.1-4/portes/R/ImpulseVMA.R | 18 portes-2.1-4/portes/R/LiMcLeod.R | 37 portes-2.1-4/portes/R/LjungBox.R | 37 portes-2.1-4/portes/R/MahdiMcLeod.r |only portes-2.1-4/portes/R/ToeplitzBlock.R | 39 - portes-2.1-4/portes/R/fitstable.R | 2 portes-2.1-4/portes/R/portest.R | 861 ++++++++++------------- portes-2.1-4/portes/R/rStable.R | 40 - portes-2.1-4/portes/R/varima.sim.R | 289 +++++-- portes-2.1-4/portes/build |only portes-2.1-4/portes/data/EconomicUK.rda |only portes-2.1-4/portes/inst/doc/portesFunctions.Rnw |only portes-2.1-4/portes/inst/doc/portesFunctions.pdf |binary portes-2.1-4/portes/inst/doc/portesV.bib |only portes-2.1-4/portes/man/BoxPierce.Rd | 132 ++- portes-2.1-4/portes/man/CRSP.Rd | 2 portes-2.1-4/portes/man/DEXCAUS.Rd | 2 portes-2.1-4/portes/man/EconomicUK.Rd |only portes-2.1-4/portes/man/GNPDEF.Rd | 2 portes-2.1-4/portes/man/GetResiduals.Rd | 24 portes-2.1-4/portes/man/Hosking.Rd | 92 +- portes-2.1-4/portes/man/IbmSp500.Rd | 2 portes-2.1-4/portes/man/ImpulseVMA.Rd | 16 portes-2.1-4/portes/man/LiMcLeod.Rd | 100 +- portes-2.1-4/portes/man/LjungBox.Rd | 136 ++- portes-2.1-4/portes/man/MahdiMcLeod.Rd |only portes-2.1-4/portes/man/ToeplitzBlock.Rd | 35 portes-2.1-4/portes/man/WestGerman.Rd | 2 portes-2.1-4/portes/man/fitstable.Rd | 6 portes-2.1-4/portes/man/monthintel.Rd | 2 portes-2.1-4/portes/man/portes-package.Rd | 608 ++++++++-------- portes-2.1-4/portes/man/portest.Rd | 387 +++++----- portes-2.1-4/portes/man/rStable.Rd | 48 - portes-2.1-4/portes/man/varima.sim.Rd | 283 ++++--- portes-2.1-4/portes/man/vma.sim.Rd | 6 portes-2.1-4/portes/vignettes |only 45 files changed, 1821 insertions(+), 1622 deletions(-)
Title: Plot a Model's Response and Residuals
Description: Plot model surfaces for a wide variety of models
using partial dependence plots and other techniques.
Also plot model residuals and other information on the model.
Author: Stephen Milborrow
Maintainer: Stephen Milborrow <milbo@sonic.net>
Diff between plotmo versions 3.3.2 dated 2016-12-02 and 3.3.3 dated 2017-05-05
DESCRIPTION | 10 MD5 | 84 ++--- NEWS | 9 R/as.char.R | 4 R/call.dots.R | 3 R/do.par.R | 2 R/dot.R | 2 R/glmnet.R | 15 R/lib.R | 9 R/plot_glmnet.R | 1 R/xy.R | 20 + inst/doc/modguide.pdf |binary inst/doc/plotres-notes.pdf |binary inst/slowtests/test.c50.bat | 2 inst/slowtests/test.caret.bat | 2 inst/slowtests/test.center.bat | 2 inst/slowtests/test.dots.Rout.save | 3 inst/slowtests/test.dots.bat | 2 inst/slowtests/test.emma.Rout.save | 2 inst/slowtests/test.emma.bat | 2 inst/slowtests/test.fac.bat | 2 inst/slowtests/test.gbm.Rout.save | 2 inst/slowtests/test.gbm.bat | 2 inst/slowtests/test.glmnet.Rout.save | 71 +--- inst/slowtests/test.glmnet.bat | 2 inst/slowtests/test.linmod.bat | 2 inst/slowtests/test.ltut.Rout.save | 22 - inst/slowtests/test.ltut.bat | 2 inst/slowtests/test.non.earth.Rout.save | 6 inst/slowtests/test.non.earth.bat | 2 inst/slowtests/test.partdep.Rout.save | 3 inst/slowtests/test.partdep.bat | 2 inst/slowtests/test.plotmo.Rout.save | 15 inst/slowtests/test.plotmo.args.bat | 2 inst/slowtests/test.plotmo.bat | 2 inst/slowtests/test.plotmo.dots.bat | 2 inst/slowtests/test.plotmo.x.bat | 2 inst/slowtests/test.plotmo3.R | 23 - inst/slowtests/test.plotmo3.Rout.save | 509 +++++++++++++++----------------- inst/slowtests/test.plotmo3.bat | 2 inst/slowtests/test.plotres.Rout.save | 2 inst/slowtests/test.plotres.bat | 2 inst/slowtests/test.printcall.bat | 2 43 files changed, 429 insertions(+), 426 deletions(-)
Title: Perceptual Analysis, Visualization and Organization of Spectral
Color Data in R
Description: A cohesive framework for parsing, analyzing and organizing color from spectral data.
Author: Rafael Maia [aut, cre],
Thomas White [aut],
Chad Eliason [aut],
Pierre-Paul Bitton [aut]
Maintainer: Rafael Maia <rm72@zips.uakron.edu>
Diff between pavo versions 1.0.1 dated 2017-03-16 and 1.1.0 dated 2017-05-05
pavo-1.0.1/pavo/R/segclass.R |only pavo-1.0.1/pavo/man/segclass.Rd |only pavo-1.1.0/pavo/DESCRIPTION | 18 +- pavo-1.1.0/pavo/MD5 | 86 ++++++------ pavo-1.1.0/pavo/NAMESPACE | 2 pavo-1.1.0/pavo/NEWS | 11 + pavo-1.1.0/pavo/R/catplot.R | 7 pavo-1.1.0/pavo/R/cieplot.R | 6 pavo-1.1.0/pavo/R/cocplot.R | 7 pavo-1.1.0/pavo/R/coldist.R | 51 +++++-- pavo-1.1.0/pavo/R/colspace.r | 31 ++-- pavo-1.1.0/pavo/R/diplot.R | 5 pavo-1.1.0/pavo/R/getspec.R | 4 pavo-1.1.0/pavo/R/getspecf.R | 4 pavo-1.1.0/pavo/R/hexplot.R | 5 pavo-1.1.0/pavo/R/internal.R | 15 ++ pavo-1.1.0/pavo/R/pavo-deprecated.R | 11 + pavo-1.1.0/pavo/R/plot.colspace.r | 4 pavo-1.1.0/pavo/R/segplot.R |only pavo-1.1.0/pavo/R/segspace.R |only pavo-1.1.0/pavo/R/summary.rspec.R | 4 pavo-1.1.0/pavo/R/tetraplot.R | 5 pavo-1.1.0/pavo/R/triplot.R | 7 pavo-1.1.0/pavo/R/vismodel.R | 125 +++++++++++++---- pavo-1.1.0/pavo/build/vignette.rds |binary pavo-1.1.0/pavo/inst/doc/pavo-1_0.Rmd | 1 pavo-1.1.0/pavo/inst/doc/pavo-1_0.html | 49 +++--- pavo-1.1.0/pavo/inst/doc/pavo.R | 19 +- pavo-1.1.0/pavo/inst/doc/pavo.Rmd | 39 +++-- pavo-1.1.0/pavo/inst/doc/pavo.html | 235 +++++++++++++++++---------------- pavo-1.1.0/pavo/man/catplot.Rd | 5 pavo-1.1.0/pavo/man/cieplot.Rd | 4 pavo-1.1.0/pavo/man/cocplot.Rd | 5 pavo-1.1.0/pavo/man/coldist.Rd | 29 ++-- pavo-1.1.0/pavo/man/colspace.Rd | 24 ++- pavo-1.1.0/pavo/man/diplot.Rd | 3 pavo-1.1.0/pavo/man/hexplot.Rd | 3 pavo-1.1.0/pavo/man/pavo-deprecated.Rd | 3 pavo-1.1.0/pavo/man/plot.colspace.Rd | 1 pavo-1.1.0/pavo/man/segplot.Rd |only pavo-1.1.0/pavo/man/segspace.Rd |only pavo-1.1.0/pavo/man/summary.rspec.Rd | 4 pavo-1.1.0/pavo/man/tetraplot.Rd | 3 pavo-1.1.0/pavo/man/triplot.Rd | 5 pavo-1.1.0/pavo/man/vismodel.Rd | 33 ++-- pavo-1.1.0/pavo/vignettes/pavo-1_0.Rmd | 1 pavo-1.1.0/pavo/vignettes/pavo.Rmd | 39 +++-- 47 files changed, 585 insertions(+), 328 deletions(-)
Title: Exponential Integral and Incomplete Gamma Function
Description: The exponential integrals E_1(x), E_2(x), E_n(x) and
Ei(x), and the incomplete gamma function G(a, x) defined for
negative values of its first argument. The package also gives easy
access to the underlying C routines through an API; see the package
vignette for details. A test package included in sub-directory
example_API provides an implementation. C routines derived from the
GNU Scientific Library <https://www.gnu.org/software/gsl/>.
Author: Vincent Goulet [cre, aut],
Gerard Jungman [aut] (Original GSL code),
Brian Gough [aut] (Original GSL code),
Jeffrey A. Ryan [aut] (Package API),
Robert Gentleman [aut] (Parts of the R to C interface),
Ross Ihaka [aut] (Parts of the R to C interface),
R Core Team [aut] (Parts of the R to C interface),
R Foundation [aut] (Parts of the R to C interface)
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between expint versions 0.1-3 dated 2017-01-10 and 0.1-4 dated 2017-05-05
DESCRIPTION | 8 ++++---- MD5 | 27 +++++++++++++++------------ NAMESPACE | 2 +- R/expint.R | 10 +++++----- R/gammainc.R | 2 +- README.md |only build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 12 ++++++++++++ inst/doc/expint.R | 10 +++++----- inst/doc/expint.Rnw | 47 +++++++++++++++++++++++------------------------ inst/doc/expint.pdf |binary src/Makevars |only src/init.c | 6 +++++- vignettes/auto |only vignettes/expint.Rnw | 47 +++++++++++++++++++++++------------------------ 16 files changed, 94 insertions(+), 77 deletions(-)
Title: Common Plots for Analysis
Description: Select data analysis plots, under a standardized calling interface implemented on top of 'ggplot2' and 'plotly'.
Plots of interest include: 'ROC', gain curve, scatter plot with marginal distributions,
conditioned scatter plot with marginal densities.
box and stem with matching theoretical distribution, and density with matching theoretical distribution.
Author: Nina Zumel, John Mount
Maintainer: John Mount <jmount@win-vector.com>
Diff between WVPlots versions 0.2.3 dated 2017-03-24 and 0.2.4 dated 2017-05-05
DESCRIPTION | 16 ++++---- MD5 | 17 ++++----- NAMESPACE | 2 + R/ROC.R | 75 +++++++++++++++++++++++++++++++++++++++++ R/ScatterHist.R | 3 + R/WVPlots.R | 6 ++- inst/doc/WVPlots_concept.html | 8 ++-- inst/doc/WVPlots_examples.html | 8 ++-- man/WVPlots.Rd | 6 ++- man/plotlyROC.Rd |only 10 files changed, 114 insertions(+), 27 deletions(-)
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement complex
random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain an
efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [ctb],
Cole Monnahan [ctb]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.7.9 dated 2017-04-12 and 1.7.10 dated 2017-05-05
DESCRIPTION | 8 +++--- MD5 | 14 +++++------ NEWS | 6 +++++ inst/CITATION | 24 ++++++++++++++++++++ inst/include/TMB.hpp | 5 ++++ inst/include/cppad/local/ad.hpp | 12 ++++++---- inst/include/cppad/local/ad_ctor.hpp | 42 ++++++++++------------------------- inst/include/tmbutils/density.hpp | 14 +++++------ 8 files changed, 74 insertions(+), 51 deletions(-)
Title: Simple Key Value Stores
Description: Creates and manages simple key-value stores. These can
use a variety of approaches for storing the data. This package
implements the base methods and support for file system and
in-memory stores.
Author: Rich FitzJohn
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between storr versions 1.0.1 dated 2016-05-10 and 1.1.0 dated 2017-05-05
storr-1.0.1/storr/inst/doc/drivers.R |only storr-1.0.1/storr/inst/doc/drivers.Rmd |only storr-1.0.1/storr/inst/doc/drivers.html |only storr-1.0.1/storr/tests/testthat/test-environment.R |only storr-1.0.1/storr/vignettes/drivers.Rmd |only storr-1.1.0/storr/DESCRIPTION | 14 storr-1.1.0/storr/MD5 | 111 ++-- storr-1.1.0/storr/NAMESPACE | 8 storr-1.1.0/storr/NEWS.md | 11 storr-1.1.0/storr/R/base64.R | 16 storr-1.1.0/storr/R/driver_dbi.R |only storr-1.1.0/storr/R/driver_environment.R | 104 ++- storr-1.1.0/storr/R/driver_external.R | 28 - storr-1.1.0/storr/R/driver_rds.R | 214 +++++-- storr-1.1.0/storr/R/driver_redis_api.R | 178 +++++- storr-1.1.0/storr/R/exceptions.R | 41 - storr-1.1.0/storr/R/hash.R |only storr-1.1.0/storr/R/spec.R | 48 - storr-1.1.0/storr/R/storr.R | 353 +++++++++---- storr-1.1.0/storr/R/storr_copy.R | 156 +++-- storr-1.1.0/storr/R/traits.R | 18 storr-1.1.0/storr/R/utils.R | 130 ++-- storr-1.1.0/storr/README.md | 25 storr-1.1.0/storr/build/vignette.rds |binary storr-1.1.0/storr/inst/doc/external.R | 30 - storr-1.1.0/storr/inst/doc/external.Rmd | 33 - storr-1.1.0/storr/inst/doc/external.html | 143 +++-- storr-1.1.0/storr/inst/doc/storr.R | 79 ++ storr-1.1.0/storr/inst/doc/storr.Rmd | 178 +++++- storr-1.1.0/storr/inst/doc/storr.html | 181 ++++-- storr-1.1.0/storr/inst/spec/test-driver.R | 218 +++++++- storr-1.1.0/storr/inst/spec/test-export.R | 54 - storr-1.1.0/storr/inst/spec/test-external.R | 9 storr-1.1.0/storr/inst/spec/test-storr.R | 279 ++++++++-- storr-1.1.0/storr/man/encode64.Rd | 5 storr-1.1.0/storr/man/fetch_hook_read.Rd | 2 storr-1.1.0/storr/man/storr.Rd | 140 ++++- storr-1.1.0/storr/man/storr_dbi.Rd |only storr-1.1.0/storr/man/storr_environment.Rd | 10 storr-1.1.0/storr/man/storr_rds.Rd | 27 storr-1.1.0/storr/man/storr_redis_api.Rd | 14 storr-1.1.0/storr/man/test_driver.Rd | 27 storr-1.1.0/storr/tests/testthat/Rprof.out |only storr-1.1.0/storr/tests/testthat/helper-storr.R |only storr-1.1.0/storr/tests/testthat/test-auto.R | 63 ++ storr-1.1.0/storr/tests/testthat/test-base64.R | 50 + storr-1.1.0/storr/tests/testthat/test-copy.R |only storr-1.1.0/storr/tests/testthat/test-driver-dbi.R |only storr-1.1.0/storr/tests/testthat/test-driver-environment.R |only storr-1.1.0/storr/tests/testthat/test-driver-rds.R | 168 +++++- storr-1.1.0/storr/tests/testthat/test-driver-redis-api.R |only storr-1.1.0/storr/tests/testthat/test-hash.R |only storr-1.1.0/storr/tests/testthat/test-spec.R |only storr-1.1.0/storr/tests/testthat/test-storr.R |only storr-1.1.0/storr/tests/testthat/test-util.R | 106 +++ storr-1.1.0/storr/tests/testthat/v1.0.1_clear |only storr-1.1.0/storr/tests/testthat/v1.0.1_mangled |only storr-1.1.0/storr/vignettes/external.Rmd | 33 - storr-1.1.0/storr/vignettes/src/drivers.R | 160 +++-- storr-1.1.0/storr/vignettes/src/external.R | 34 - storr-1.1.0/storr/vignettes/src/storr.R | 151 ++++- storr-1.1.0/storr/vignettes/storr.Rmd | 174 +++++- 62 files changed, 2757 insertions(+), 1066 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to encode spatial vector data. Binds
to GDAL for reading and writing data, to GEOS for geometrical operations, and to Proj.4 for projection
conversions and datum transformations.
Author: Edzer Pebesma [aut, cre],
Roger Bivand [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Michael Sumner [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb],
Etienne Racine [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 0.4-1 dated 2017-03-28 and 0.4-2 dated 2017-05-05
sf-0.4-1/sf/R/lwgeom.R |only sf-0.4-1/sf/R/tidy.R |only sf-0.4-1/sf/man/as_Spatial.Rd |only sf-0.4-1/sf/man/st_make_valid.Rd |only sf-0.4-2/sf/DESCRIPTION | 20 - sf-0.4-2/sf/MD5 | 172 ++++++++------- sf-0.4-2/sf/NAMESPACE | 16 + sf-0.4-2/sf/NEWS.md | 45 ++++ sf-0.4-2/sf/R/RcppExports.R | 20 + sf-0.4-2/sf/R/aggregate.R | 37 ++- sf-0.4-2/sf/R/arith.R | 42 +-- sf-0.4-2/sf/R/bind.R |only sf-0.4-2/sf/R/cast_sfc.R | 2 sf-0.4-2/sf/R/cast_sfg.R | 55 +++-- sf-0.4-2/sf/R/crs.R | 2 sf-0.4-2/sf/R/db.R | 325 ++++++++++++++++-------------- sf-0.4-2/sf/R/geom.R | 201 ++++++++++-------- sf-0.4-2/sf/R/init.R | 4 sf-0.4-2/sf/R/plot.R | 13 - sf-0.4-2/sf/R/read.R | 57 +++-- sf-0.4-2/sf/R/sf.R | 101 ++++----- sf-0.4-2/sf/R/sfc.R | 12 + sf-0.4-2/sf/R/sp.R | 14 - sf-0.4-2/sf/R/tidyverse.R |only sf-0.4-2/sf/R/transform.R | 18 + sf-0.4-2/sf/R/valid.R |only sf-0.4-2/sf/R/wkb.R | 60 +++-- sf-0.4-2/sf/R/wkt.R | 7 sf-0.4-2/sf/build/vignette.rds |binary sf-0.4-2/sf/configure | 169 ++++++++++++--- sf-0.4-2/sf/configure.ac | 105 +++++++-- sf-0.4-2/sf/data/bgmap.rda |binary sf-0.4-2/sf/inst/doc/sf1.R | 32 ++ sf-0.4-2/sf/inst/doc/sf1.Rmd | 144 +++++++++---- sf-0.4-2/sf/inst/doc/sf1.html | 132 ++++++++---- sf-0.4-2/sf/inst/doc/sf2.R | 2 sf-0.4-2/sf/inst/doc/sf2.Rmd | 2 sf-0.4-2/sf/inst/doc/sf2.html | 19 - sf-0.4-2/sf/inst/doc/sf3.R | 2 sf-0.4-2/sf/inst/doc/sf3.Rmd | 2 sf-0.4-2/sf/inst/doc/sf3.html | 6 sf-0.4-2/sf/inst/docker/gdal22 |only sf-0.4-2/sf/man/aggregate.sf.Rd | 8 sf-0.4-2/sf/man/bind.Rd | 32 ++ sf-0.4-2/sf/man/dplyr.Rd | 56 ++++- sf-0.4-2/sf/man/geos.Rd | 48 ++-- sf-0.4-2/sf/man/plot.Rd | 2 sf-0.4-2/sf/man/sf.Rd | 11 - sf-0.4-2/sf/man/st_as_binary.Rd | 10 sf-0.4-2/sf/man/st_as_sfc.Rd | 24 +- sf-0.4-2/sf/man/st_geometry.Rd | 3 sf-0.4-2/sf/man/st_make_grid.Rd | 16 + sf-0.4-2/sf/man/st_precision.Rd | 7 sf-0.4-2/sf/man/st_read.Rd | 12 - sf-0.4-2/sf/man/st_transform.Rd | 11 + sf-0.4-2/sf/man/st_write.Rd | 53 +++- sf-0.4-2/sf/man/tibble.Rd | 2 sf-0.4-2/sf/man/valid.Rd |only sf-0.4-2/sf/src/RcppExports.cpp | 42 ++- sf-0.4-2/sf/src/gdal.cpp | 27 +- sf-0.4-2/sf/src/gdal_read.cpp | 23 +- sf-0.4-2/sf/src/gdal_write.cpp | 100 ++++++--- sf-0.4-2/sf/src/geos.cpp | 27 +- sf-0.4-2/sf/src/init.c | 155 +++++++------- sf-0.4-2/sf/src/lwgeom.cpp | 2 sf-0.4-2/sf/src/wkb.cpp | 145 ++++++++++--- sf-0.4-2/sf/src/wkb.h | 2 sf-0.4-2/sf/tests/cast.R | 13 + sf-0.4-2/sf/tests/cast.Rout.save | 45 +++- sf-0.4-2/sf/tests/dist.Rout.save | 8 sf-0.4-2/sf/tests/dplyr.R | 4 sf-0.4-2/sf/tests/dplyr.Rout.save | 84 ++++++- sf-0.4-2/sf/tests/geos.R | 23 +- sf-0.4-2/sf/tests/geos.Rout.save | 142 ++++++++++++- sf-0.4-2/sf/tests/read.R | 22 -- sf-0.4-2/sf/tests/read.Rout.save | 67 ------ sf-0.4-2/sf/tests/roundtrip.R | 3 sf-0.4-2/sf/tests/roundtrip.Rout.save | 9 sf-0.4-2/sf/tests/sfc.R | 5 sf-0.4-2/sf/tests/sfc.Rout.save | 16 - sf-0.4-2/sf/tests/testthat.R | 1 sf-0.4-2/sf/tests/testthat.Rout.save |only sf-0.4-2/sf/tests/testthat/Rplots.pdf |binary sf-0.4-2/sf/tests/testthat/test_crs.R | 3 sf-0.4-2/sf/tests/testthat/test_gdal.R | 14 + sf-0.4-2/sf/tests/testthat/test_postgis.R | 37 ++- sf-0.4-2/sf/tests/testthat/test_read.R | 7 sf-0.4-2/sf/tests/testthat/test_sf.R | 5 sf-0.4-2/sf/tests/testthat/test_write.R | 56 ++++- sf-0.4-2/sf/vignettes/sf1.Rmd | 144 +++++++++---- sf-0.4-2/sf/vignettes/sf2.Rmd | 2 sf-0.4-2/sf/vignettes/sf3.Rmd | 2 92 files changed, 2262 insertions(+), 1106 deletions(-)
Title: Matrix Correlation Coefficients
Description: Computation and visualization of matrix correlation coefficients.
The main method is the Similarity of Matrices Index, while various related
measures like r1, r2, r3, r4, Yanai's GCD, RV, RV2 and adjusted RV are included
for comparison.
Author: Kristian Hovde Liland [aut, cre],
Tormod N�s [ctb],
Ulf Geir Indahl [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nofima.no>
Diff between MatrixCorrelation versions 0.9 dated 2016-10-12 and 0.9.1 dated 2017-05-05
DESCRIPTION | 10 +++++----- MD5 | 39 ++++++++++++++++++++------------------- NAMESPACE | 2 +- R/MatrixCorrelation.R | 2 +- R/SMI.R | 6 ++++-- R/SMI_results.R | 2 +- R/SMI_significance.R | 2 +- R/candy.R | 2 +- R/cor.test_eq.R | 2 +- man/MatrixCorrelation.Rd | 12 ++++++++++++ man/PCAcv.Rd | 7 +++---- man/PSI.Rd | 1 - man/RV.Rd | 11 +++++++---- man/SMI.Rd | 7 +++---- man/allCorrelations.Rd | 7 +++---- man/candy.Rd | 1 - man/cor.test_eq.Rd | 7 +++---- man/plot.SMI.Rd | 12 +++++++----- man/r1.Rd | 12 +++++++----- man/significant.Rd | 7 +++---- src/init.c |only 21 files changed, 83 insertions(+), 68 deletions(-)
More information about MatrixCorrelation at CRAN
Permanent link
Title: Boosting Methods for 'GAMLSS'
Description: Boosting models for fitting generalized additive models for
location, shape and scale ('GAMLSS') to potentially high dimensional
data.
Author: Benjamin Hofner, Andreas Mayr, Nora Fenske, Janek Thomas, Matthias Schmid
Maintainer: Benjamin Hofner <benjamin.hofner@pei.de>
Diff between gamboostLSS versions 1.2-2 dated 2016-10-19 and 2.0-0 dated 2017-05-05
ChangeLog | 1079 ++++++++++++ DESCRIPTION | 16 MD5 | 77 NAMESPACE | 143 - R/AAA.R | 13 R/as.families.R | 342 ++- R/cvrisk.R | 738 ++++---- R/cvrisk.nc_mboostLSS.R |only R/families.R | 1764 +++++++++---------- R/helpers.R | 420 ++-- R/mboostLSS.R | 812 +++++---- R/methods.R | 1017 +++++++---- README.md |only build/vignette.rds |binary data/india.RData |binary data/india.bnd.RData |binary inst/CITATION | 163 + inst/NEWS.Rd | 501 +++-- inst/doc/gamboostLSS_Tutorial.R | 971 +++++----- inst/doc/gamboostLSS_Tutorial.Rnw | 3280 ++++++++++++++++++------------------- inst/doc/gamboostLSS_Tutorial.pdf |binary man/as.families.Rd | 335 +-- man/cvrisk.Rd | 494 ++--- man/families.Rd | 655 +++---- man/gamboostLSS-package.Rd | 254 +- man/gamboostLSS_intern.Rd | 38 man/india.Rd | 134 - man/mboostLSS.Rd | 501 +++-- man/methods.Rd | 745 ++++---- man/stabsel.mboostLSS.Rd |only man/weighted_median.Rd | 133 - tests/bugfixes.R | 119 - tests/regtest-families.R | 441 ++-- tests/regtest-gamboostLSS.R | 82 tests/regtest-glmboostLSS.R | 270 +-- tests/regtest-mstop.R | 304 +-- tests/regtest-noncyclic_fitting.R |only tests/regtest-stabilization.R | 334 ++- tests/regtest-stabsel.R |only vignettes/bib.bib | 998 +++++------ vignettes/fig-crossvalidation.pdf |binary vignettes/gamboostLSS_Tutorial.Rnw | 3280 ++++++++++++++++++------------------- 42 files changed, 11240 insertions(+), 9213 deletions(-)
Title: Companion Animal Population Management
Description: Quantitative analysis to support companion animal population
management. Some functions assist survey sampling tasks (calculate sample
size for simple and complex designs, select sampling units and estimate
population parameters) while others assist the modelling of population
dynamics. For sampling methods see: Levy PS & Lemeshow S. (2013),
ISBN-10: 0470040076; Lumley (2010), ISBN: 978-0-470-28430-8. For
modelling of population dynamics see: Baquero et al (2016)
<https://doi.org/10.1016/j.prevetmed.2015.11.009>; Baquero et al (2016),
ISSN 1679-9216; Amaku et al (2010)
<http://dx.doi.org/10.1590/S1020-49892009000400003>.
Author: Oswaldo Santos Baquero [aut, cre],
Marcos Amaku [ctb],
Fernando Ferreira [ctb]
Maintainer: Oswaldo Santos Baquero <baquero@usp.br>
Diff between capm versions 0.9.1 dated 2016-03-06 and 0.11.0 dated 2017-05-05
capm-0.11.0/capm/DESCRIPTION | 26 ++- capm-0.11.0/capm/MD5 | 137 ++++++++++-------- capm-0.11.0/capm/NEWS | 20 ++ capm-0.11.0/capm/R/Calculate2StageSampleSize.R | 18 +- capm-0.11.0/capm/R/CalculateGlobalSens.R | 26 +-- capm-0.11.0/capm/R/CalculateLocalSens.R | 24 +-- capm-0.11.0/capm/R/CalculatePopChange.R | 20 +- capm-0.11.0/capm/R/CalculateSimpleSampleSize.R | 17 +- capm-0.11.0/capm/R/CalculateStratifiedSampleSize.R | 21 +- capm-0.11.0/capm/R/DesignSurvey.R | 84 ++++++----- capm-0.11.0/capm/R/GraphicInterface.R | 6 capm-0.11.0/capm/R/MapkmlPSU.R | 22 +- capm-0.11.0/capm/R/PlotGlobalSens.R | 36 ++-- capm-0.11.0/capm/R/PlotLocalSens.R | 28 +-- capm-0.11.0/capm/R/PlotModels.R | 37 ++-- capm-0.11.0/capm/R/PlotPopPyramid.R | 92 ++++++------ capm-0.11.0/capm/R/SamplePPS.R | 15 - capm-0.11.0/capm/R/SampleSystematic.R | 27 +-- capm-0.11.0/capm/R/SetRanges.R | 14 - capm-0.11.0/capm/R/SolveIASA.R | 26 +-- capm-0.11.0/capm/R/SolveSI.R | 26 +-- capm-0.11.0/capm/R/SolveTC.R | 26 +-- capm-0.11.0/capm/R/SummarySurvey.R | 84 ++--------- capm-0.11.0/capm/R/capm-package.R | 10 - capm-0.11.0/capm/R/cats.R |only capm-0.11.0/capm/R/city.R |only capm-0.11.0/capm/R/cluster_pilot.R |only capm-0.11.0/capm/R/cluster_sample.R |only capm-0.11.0/capm/R/cluster_sample_animals.R |only capm-0.11.0/capm/R/cluster_sample_animals_lost.R |only capm-0.11.0/capm/R/dogs.R |only capm-0.11.0/capm/R/hh.R |only capm-0.11.0/capm/R/sys_sample.R |only capm-0.11.0/capm/R/sys_sample_animals.R |only capm-0.11.0/capm/R/sys_sample_animals_lost.R |only capm-0.11.0/capm/README.md | 23 +-- capm-0.11.0/capm/data/cats.rda |only capm-0.11.0/capm/data/city.rda |only capm-0.11.0/capm/data/cluster_pilot.rda |only capm-0.11.0/capm/data/cluster_sample.rda |only capm-0.11.0/capm/data/cluster_sample_animals.rda |only capm-0.11.0/capm/data/cluster_sample_animals_lost.rda |only capm-0.11.0/capm/data/dogs.rda |only capm-0.11.0/capm/data/hh.rda |only capm-0.11.0/capm/data/sys_sample.rda |only capm-0.11.0/capm/data/sys_sample_animals.rda |only capm-0.11.0/capm/data/sys_sample_animals_lost.rda |only capm-0.11.0/capm/inst/extdata/35SEE250GC_SIR.dbf |only capm-0.11.0/capm/inst/extdata/35SEE250GC_SIR.prj |only capm-0.11.0/capm/inst/extdata/35SEE250GC_SIR.shp |only capm-0.11.0/capm/inst/extdata/35SEE250GC_SIR.shx |only capm-0.11.0/capm/man/Calculate2StageSampleSize.Rd | 19 +- capm-0.11.0/capm/man/CalculateGlobalSens.Rd | 27 +-- capm-0.11.0/capm/man/CalculateLocalSens.Rd | 25 +-- capm-0.11.0/capm/man/CalculatePopChange.Rd | 21 +- capm-0.11.0/capm/man/CalculateSimpleSampleSize.Rd | 18 +- capm-0.11.0/capm/man/CalculateStratifiedSampleSize.Rd | 22 +- capm-0.11.0/capm/man/DesignSurvey.Rd | 60 ++++--- capm-0.11.0/capm/man/GraphicInterface.Rd | 7 capm-0.11.0/capm/man/MapkmlPSU.Rd | 22 +- capm-0.11.0/capm/man/PlotGlobalSens.Rd | 35 ++-- capm-0.11.0/capm/man/PlotLocalSens.Rd | 27 +-- capm-0.11.0/capm/man/PlotModels.Rd | 34 ++-- capm-0.11.0/capm/man/PlotPopPyramid.Rd | 38 ++-- capm-0.11.0/capm/man/SamplePPS.Rd | 14 - capm-0.11.0/capm/man/SampleSystematic.Rd | 30 +-- capm-0.11.0/capm/man/SetRanges.Rd | 15 - capm-0.11.0/capm/man/SolveIASA.Rd | 25 +-- capm-0.11.0/capm/man/SolveSI.Rd | 21 +- capm-0.11.0/capm/man/SolveTC.Rd | 21 +- capm-0.11.0/capm/man/SummarySurvey.Rd | 85 ++--------- capm-0.11.0/capm/man/capm-package.Rd | 11 - capm-0.11.0/capm/man/cats.Rd |only capm-0.11.0/capm/man/city.Rd |only capm-0.11.0/capm/man/cluster_pilot.Rd |only capm-0.11.0/capm/man/cluster_sample.Rd |only capm-0.11.0/capm/man/cluster_sample_animals.Rd |only capm-0.11.0/capm/man/cluster_sample_animals_lost.Rd |only capm-0.11.0/capm/man/dogs.Rd |only capm-0.11.0/capm/man/hh.Rd |only capm-0.11.0/capm/man/sys_sample.Rd |only capm-0.11.0/capm/man/sys_sample_animals.Rd |only capm-0.11.0/capm/man/sys_sample_animals_lost.Rd |only capm-0.9.1/capm/data/pilot.rda |only capm-0.9.1/capm/data/psu.ssu.rda |only capm-0.9.1/capm/data/survey.data.rda |only capm-0.9.1/capm/inst/extdata/santos.dbf |only capm-0.9.1/capm/inst/extdata/santos.prj |only capm-0.9.1/capm/inst/extdata/santos.shp |only capm-0.9.1/capm/inst/extdata/santos.shx |only capm-0.9.1/capm/man/pilot.Rd |only capm-0.9.1/capm/man/psu.ssu.Rd |only capm-0.9.1/capm/man/survey.data.Rd |only 93 files changed, 704 insertions(+), 738 deletions(-)
Title: One Rule Machine Learning Classification Algorithm with
Enhancements
Description: Implements the One Rule (OneR) Machine Learning classification algorithm (Holte, R.C. (1993) <doi:10.1023/A:1022631118932>) with enhancements for sophisticated handling of numeric data and missing values together with extensive diagnostic functions. It is useful as a baseline for machine learning models and the rules are often helpful heuristics.
Author: Holger von Jouanne-Diedrich
Maintainer: Holger von Jouanne-Diedrich <holger.jouanne-diedrich@h-ab.de>
Diff between OneR versions 2.1 dated 2016-10-24 and 2.2 dated 2017-05-05
DESCRIPTION | 12 ++++----- LICENSE | 4 +-- MD5 | 46 +++++++++++++++++------------------ NAMESPACE | 6 ++++ NEWS | 50 ++++++++++++++++++++++++-------------- R/OneR.R | 67 +++++++++++++++++++++++++++++++--------------------- R/OneR_data.R | 2 - R/OneR_internal.R | 10 +++++-- R/OneR_main.R | 57 ++++++++++++++++++++++++++++---------------- build/vignette.rds |binary inst/doc/OneR.Rmd | 38 ++++++++++++++--------------- inst/doc/OneR.html | 60 +++++++++++++++++++++++----------------------- man/OneR.Rd | 37 ++++++++++++++++++++-------- man/bin.Rd | 15 +++++------ man/breastcancer.Rd | 3 -- man/eval_model.Rd | 9 +++--- man/is.OneR.Rd | 7 ++--- man/maxlevels.Rd | 13 ++++------ man/optbin.Rd | 41 ++++++++++++++++++++++--------- man/plot.OneR.Rd | 7 ++--- man/predict.OneR.Rd | 9 +++--- man/print.OneR.Rd | 7 ++--- man/summary.OneR.Rd | 7 ++--- vignettes/OneR.Rmd | 38 ++++++++++++++--------------- 24 files changed, 311 insertions(+), 234 deletions(-)
Title: Functional Rarity Indices Computation
Description: Computes functional rarity indices as proposed by Violle et al.
(2017) <doi:10.1016/j.tree.2017.02.002>. Various indices can be computed
using both regional and local information. Functional Rarity combines both
the functional aspect of rarity as well as the extent aspect of rarity.
Author: Matthias Grenié [aut, cre],
Pierre Denelle [aut],
Caroline Tucker [aut]
Maintainer: Matthias Grenié <matthias.grenie@gmail.com>
Diff between funrar versions 1.0.2 dated 2016-11-24 and 1.0.3 dated 2017-05-05
DESCRIPTION | 16 MD5 | 91 +- NAMESPACE | 47 - NEWS.md | 17 R/check_functions.R | 504 +++++++-------- R/compute_dist_matrix.R | 119 +-- R/distinctiveness.R | 512 +++++++-------- R/funrar.R | 234 +++---- R/make_relative.R | 166 +++- R/restrictedness.R | 272 ++++---- R/scarcity.R | 334 +++++----- R/stack_matrix.R | 301 ++++----- R/uniqueness.R | 282 ++++---- README.md | 86 +- build/vignette.rds |binary inst/doc/rarity_indices.R | 324 ++++----- inst/doc/rarity_indices.Rmd | 700 ++++++++++----------- inst/doc/rarity_indices.html | 1132 +++++++++++++++++----------------- inst/doc/sparse_matrices.R | 182 ++--- inst/doc/sparse_matrices.Rmd | 316 ++++----- inst/doc/sparse_matrices.html | 468 +++++++------- man/compute_dist_matrix.Rd | 103 +-- man/distinctiveness.Rd | 134 ++-- man/distinctiveness_com.Rd | 94 +- man/distinctiveness_stack.Rd | 127 +-- man/funrar.Rd | 95 +- man/funrar_stack.Rd | 105 +-- man/is_relative.Rd |only man/make_absolute.Rd | 37 - man/make_relative.Rd | 39 - man/matrix_to_stack.Rd | 92 +- man/restrictedness.Rd | 109 +-- man/restrictedness_stack.Rd | 87 +- man/scarcity.Rd | 107 +-- man/scarcity_com.Rd | 75 +- man/scarcity_stack.Rd | 109 +-- man/stack_to_matrix.Rd | 86 +- man/uniqueness.Rd | 117 +-- man/uniqueness_stack.Rd | 105 +-- tests/testthat.R | 8 tests/testthat/test-check_functions.R | 353 +++++----- tests/testthat/test-dist_matrix.R | 202 +++--- tests/testthat/test-rarity_indices.R | 581 +++++++++-------- tests/testthat/test-rel_abund.R | 135 ++-- tests/testthat/test-tidy_matrix.R | 273 ++++---- vignettes/rarity_indices.Rmd | 700 ++++++++++----------- vignettes/sparse_matrices.Rmd | 316 ++++----- 47 files changed, 5240 insertions(+), 5052 deletions(-)
Title: Genome Interval Arithmetic in R
Description: Read and manipulate genome intervals and signals. Provides
functionality similar to command-line tool suites within R,
enabling interactive analysis and visualization of genome-scale data.
Author: Jay Hesselberth [aut, cre],
Kent Riemondy [aut],
Ryan Sheridan [ctb]
Maintainer: Jay Hesselberth <jay.hesselberth@gmail.com>
Diff between valr versions 0.1.2 dated 2017-03-16 and 0.2.0 dated 2017-05-05
valr-0.1.2/valr/src/utils.cpp |only valr-0.2.0/valr/DESCRIPTION | 8 valr-0.2.0/valr/MD5 | 331 +++++++++++++------ valr-0.2.0/valr/NAMESPACE | 8 valr-0.2.0/valr/NEWS.md | 22 + valr-0.2.0/valr/R/RcppExports.R | 4 valr-0.2.0/valr/R/bed12_to_exons.r | 32 - valr-0.2.0/valr/R/bed_absdist.r | 96 ++--- valr-0.2.0/valr/R/bed_closest.r | 61 +-- valr-0.2.0/valr/R/bed_cluster.r | 16 valr-0.2.0/valr/R/bed_complement.r | 58 +-- valr-0.2.0/valr/R/bed_coverage.R | 67 +-- valr-0.2.0/valr/R/bed_fisher.r | 72 ++-- valr-0.2.0/valr/R/bed_flank.r | 106 +++--- valr-0.2.0/valr/R/bed_glyph.r | 22 - valr-0.2.0/valr/R/bed_intersect.r | 105 ++++-- valr-0.2.0/valr/R/bed_jaccard.r | 78 ++-- valr-0.2.0/valr/R/bed_makewindows.r | 61 +-- valr-0.2.0/valr/R/bed_map.r | 115 +++--- valr-0.2.0/valr/R/bed_merge.r | 72 ++-- valr-0.2.0/valr/R/bed_projection.r | 88 ++--- valr-0.2.0/valr/R/bed_random.r | 41 +- valr-0.2.0/valr/R/bed_reldist.r | 66 +-- valr-0.2.0/valr/R/bed_shift.r | 62 +-- valr-0.2.0/valr/R/bed_shuffle.r | 47 +- valr-0.2.0/valr/R/bed_slop.r | 55 +-- valr-0.2.0/valr/R/bed_subtract.r | 66 ++- valr-0.2.0/valr/R/bed_window.r | 81 ++-- valr-0.2.0/valr/R/db.r | 2 valr-0.2.0/valr/R/read_bed.r | 98 ++--- valr-0.2.0/valr/R/read_genome.r | 59 +-- valr-0.2.0/valr/R/read_vcf.r | 6 valr-0.2.0/valr/R/sorting.r | 14 valr-0.2.0/valr/R/spacing.r | 42 +- valr-0.2.0/valr/R/strands.r | 34 + valr-0.2.0/valr/R/tbls.r |only valr-0.2.0/valr/R/utils.r | 94 ++--- valr-0.2.0/valr/R/valr.r | 20 - valr-0.2.0/valr/README.md | 28 - valr-0.2.0/valr/build/vignette.rds |binary valr-0.2.0/valr/inst/CITATION | 23 - valr-0.2.0/valr/inst/doc/interval-stats.R | 3 valr-0.2.0/valr/inst/doc/interval-stats.Rmd | 5 valr-0.2.0/valr/inst/doc/interval-stats.html | 118 +++--- valr-0.2.0/valr/inst/doc/valr.R | 19 - valr-0.2.0/valr/inst/doc/valr.Rmd | 23 - valr-0.2.0/valr/inst/doc/valr.html | 111 ++---- valr-0.2.0/valr/inst/include/IntervalTree.h | 7 valr-0.2.0/valr/inst/include/dplyr |only valr-0.2.0/valr/inst/include/dplyr.h |only valr-0.2.0/valr/inst/include/genome.h |only valr-0.2.0/valr/inst/include/group_apply.h |only valr-0.2.0/valr/inst/include/intervals.h |only valr-0.2.0/valr/inst/include/random.h |only valr-0.2.0/valr/inst/include/solaris |only valr-0.2.0/valr/inst/include/tools |only valr-0.2.0/valr/inst/include/valr.h | 81 +--- valr-0.2.0/valr/man/bed12_to_exons.Rd | 8 valr-0.2.0/valr/man/bed_absdist.Rd | 58 +-- valr-0.2.0/valr/man/bed_closest.Rd | 68 ++- valr-0.2.0/valr/man/bed_cluster.Rd | 21 - valr-0.2.0/valr/man/bed_complement.Rd | 25 - valr-0.2.0/valr/man/bed_coverage.Rd | 56 +-- valr-0.2.0/valr/man/bed_fisher.Rd | 24 - valr-0.2.0/valr/man/bed_flank.Rd | 24 - valr-0.2.0/valr/man/bed_glyph.Rd | 8 valr-0.2.0/valr/man/bed_intersect.Rd | 61 ++- valr-0.2.0/valr/man/bed_jaccard.Rd | 40 +- valr-0.2.0/valr/man/bed_makewindows.Rd | 24 - valr-0.2.0/valr/man/bed_map.Rd | 45 +- valr-0.2.0/valr/man/bed_merge.Rd | 23 - valr-0.2.0/valr/man/bed_projection.Rd | 48 +- valr-0.2.0/valr/man/bed_random.Rd | 28 + valr-0.2.0/valr/man/bed_reldist.Rd | 39 +- valr-0.2.0/valr/man/bed_shift.Rd | 26 - valr-0.2.0/valr/man/bed_shuffle.Rd | 17 valr-0.2.0/valr/man/bed_slop.Rd | 29 - valr-0.2.0/valr/man/bed_sort.Rd | 6 valr-0.2.0/valr/man/bed_subtract.Rd | 32 - valr-0.2.0/valr/man/bed_window.Rd | 44 +- valr-0.2.0/valr/man/bound_intervals.Rd | 8 valr-0.2.0/valr/man/figures |only valr-0.2.0/valr/man/flip_strands.Rd | 12 valr-0.2.0/valr/man/interval_spacing.Rd | 16 valr-0.2.0/valr/man/is.tbl_genome.Rd |only valr-0.2.0/valr/man/is.tbl_interval.Rd |only valr-0.2.0/valr/man/read_bed.Rd | 16 valr-0.2.0/valr/man/read_genome.Rd | 9 valr-0.2.0/valr/man/read_vcf.Rd | 4 valr-0.2.0/valr/man/sorting.Rd | 6 valr-0.2.0/valr/man/tbl_genome.Rd |only valr-0.2.0/valr/man/tbl_interval.Rd |only valr-0.2.0/valr/man/trbl_genome.Rd |only valr-0.2.0/valr/man/trbl_interval.Rd |only valr-0.2.0/valr/man/valr.Rd | 6 valr-0.2.0/valr/src/RcppExports.cpp | 9 valr-0.2.0/valr/src/absdist.cpp | 13 valr-0.2.0/valr/src/closest.cpp | 23 - valr-0.2.0/valr/src/complement.cpp | 17 valr-0.2.0/valr/src/coverage.cpp | 25 - valr-0.2.0/valr/src/init.c | 20 + valr-0.2.0/valr/src/intersect.cpp | 19 - valr-0.2.0/valr/src/merge.cpp | 20 - valr-0.2.0/valr/src/random.cpp | 35 +- valr-0.2.0/valr/src/reldist.cpp | 15 valr-0.2.0/valr/src/shuffle.cpp | 56 +-- valr-0.2.0/valr/src/subtract.cpp | 86 +--- valr-0.2.0/valr/tests/testthat/test-db.r | 14 valr-0.2.0/valr/tests/testthat/test_bed12_to_exons.r | 2 valr-0.2.0/valr/tests/testthat/test_genome.r | 20 + valr-0.2.0/valr/tests/testthat/test_intersect.r | 114 ++++++ valr-0.2.0/valr/tests/testthat/test_jaccard.r | 10 valr-0.2.0/valr/tests/testthat/test_merge.r | 12 valr-0.2.0/valr/tests/testthat/test_random.r | 6 valr-0.2.0/valr/tests/testthat/test_subtract.r | 43 +- valr-0.2.0/valr/tests/testthat/test_tbls.r |only valr-0.2.0/valr/tests/testthat/test_utils.R | 23 - valr-0.2.0/valr/vignettes/interval-stats.Rmd | 5 valr-0.2.0/valr/vignettes/valr.Rmd | 23 - 119 files changed, 2307 insertions(+), 1761 deletions(-)
Title: Simulating Phylogenetic Trees under a General Model with or
without Shifts
Description: Provides a flexible simulation tool for phylogenetic trees under a general model for speciation and extinction. Trees with a user-specified number of extant tips, or a user-specified stem age are simulated. It is possible to assume any probability distribution for the waiting time until speciation and extinction. Furthermore, the waiting times to speciation / extinction may be scaled in different parts of the tree, meaning we can simulate trees with clade-dependent diversification processes. At a speciation event, one species splits into two. We allow for two different modes at these splits: (i) symmetric, where for every speciation event new waiting times until speciation and extinction are drawn for both daughter lineages; and (ii) asymmetric, where a speciation event results in one species with new waiting times, and another that carries the extinction time and age of its ancestor. The symmetric mode can be seen as an vicariant or allopatric process where divided populations suffer equal evolutionary forces while the asymmetric mode could be seen as a peripatric speciation where a mother lineage continues to exist.
Author: Oskar Hagen, Tanja Stadler
Maintainer: Oskar Hagen <oskar.hagen@outlook.com>
Diff between TreeSimGM versions 1.2 dated 2014-07-25 and 2.1 dated 2017-05-05
DESCRIPTION | 15 MD5 | 24 - NAMESPACE | 10 R/mytree.asymmetric.age.R | 801 +++++++++++++++++++++++++----------------- R/mytree.asymmetric.taxa.R | 857 ++++++++++++++++++++++++++------------------- R/mytree.symmetric.age.R | 664 +++++++++++++++++++++------------- R/mytree.symmetric.taxa.R | 710 ++++++++++++++++++++++--------------- R/sim.age.R | 53 +- R/sim.taxa.R | 87 ++-- R/track.shift.R |only man/TreeSimGM-package.Rd | 31 - man/sim.age.Rd | 213 +++++++++-- man/sim.taxa.Rd | 118 ++++-- man/track.shift.Rd |only 14 files changed, 2221 insertions(+), 1362 deletions(-)
Title: Efficiently Read Sequence Data (VCF Format, BCF Format and METAL
Format) into R
Description: Integrate sequencing data (Variant call format, e.g. VCF or BCF) or meta-analysis results in R. This package can help you (1) read VCF/BCF files by chromosomal ranges (e.g. 1:100-200); (2) read RareMETAL summary statistics files; (3) read tables from a tabix-indexed files; (4) annotate VCF/BCF files; (5) create customized workflow based on Makefile.
Author: Xiaowei Zhan [aut, cre],
Dajiang Liu [aut],
Attractive Chaos [cph] (We have used the following software and made
minimal necessary changes: Tabix, Heng Li <lh3@live.co.uk> (MIT
license). We removed standard IO related functions, e.g. printf,
fprintf ; also changed its un-safe pointer arithmetics.),
Broad Institute / Massachusetts Institute of Technology [cph],
Genome Research Ltd (GRL) [cph]
Maintainer: Xiaowei Zhan <zhanxw@gmail.com>
Diff between seqminer versions 5.9 dated 2017-04-18 and 6.0 dated 2017-05-05
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/seqminer.R | 16 ++++++++++------ README.md | 3 ++- man/tabix.read.Rd | 2 +- src/RangeList.cpp | 20 ++++++++------------ src/rvMetaLoader.cpp | 8 ++++++++ 8 files changed, 44 insertions(+), 31 deletions(-)
Title: Import 'Stata' Data Files
Description: Function to read and write the 'Stata' file format.
Author: Jan Marvin Garbuszus [aut],
Sebastian Jeworutzki [aut, cre],
R Core Team [cph],
Magnus Thor Torfason [ctb],
Luke M. Olson [ctb],
Giovanni Righi [ctb]
Maintainer: Sebastian Jeworutzki <Sebastian.Jeworutzki@ruhr-uni-bochum.de>
Diff between readstata13 versions 0.8.5 dated 2016-09-09 and 0.9.0 dated 2017-05-05
DESCRIPTION | 16 +++-- MD5 | 63 ++++++++++---------- NAMESPACE | 1 NEWS | 10 ++- R/RcppExports.R | 4 - R/read.R | 82 +++++++++++++++++++++------ R/readstata13.R | 4 - R/save.R | 14 +--- R/tools.R | 41 ++++++++++++- README.md | 13 +++- inst/extdata/test.zip |only inst/include/read_dta.h | 2 inst/include/read_pre13_dta.h | 2 man/as.caldays.Rd | 1 man/get.label.Rd | 1 man/get.label.name.Rd | 1 man/get.lang.Rd | 1 man/get.origin.codes.Rd | 1 man/maxchar.Rd |only man/read.dta13.Rd | 34 ++++++----- man/readstata13.Rd | 9 +- man/save.dta13.Rd | 13 +--- man/saveToExport.Rd | 1 man/set.label.Rd | 4 - man/set.lang.Rd | 1 man/stbcal.Rd | 1 man/varlabel.Rd | 2 src/RcppExports.cpp | 7 +- src/rcpp_readstata.cpp | 7 +- src/rcpp_savestata.cpp | 2 src/read_dta.cpp | 125 ++++++++++++++++++++++++++++++----------- src/read_pre13_dta.cpp | 113 ++++++++++++++++++++++++++++--------- src/register.c |only tests/testthat/test_save.R | 127 ++++++++++++++++++++++++++++++++++++++++++ 34 files changed, 526 insertions(+), 177 deletions(-)
Title: Mini Charts for Interactive Maps
Description: Add and modify small charts on an interactive map created with
package 'leaflet'. These charts can be used to represent at same time multiple
variables on a single map.
Author: Francois Guillem [aut, cre],
Jalal-Edine ZAWAM [ctb],
RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between leaflet.minicharts versions 0.1.0 dated 2017-04-19 and 0.2.0 dated 2017-05-05
leaflet.minicharts-0.1.0/leaflet.minicharts/R/prepare_options.R |only leaflet.minicharts-0.1.0/leaflet.minicharts/data/regions.rda |only leaflet.minicharts-0.1.0/leaflet.minicharts/inst/leaflet.minichart.min.js |only leaflet.minicharts-0.1.0/leaflet.minicharts/inst/minichart_bindings.js |only leaflet.minicharts-0.1.0/leaflet.minicharts/man/regions.Rd |only leaflet.minicharts-0.1.0/leaflet.minicharts/vignettes/minicharts_shiny.gif |only leaflet.minicharts-0.2.0/leaflet.minicharts/DESCRIPTION | 12 leaflet.minicharts-0.2.0/leaflet.minicharts/MD5 | 48 +- leaflet.minicharts-0.2.0/leaflet.minicharts/NAMESPACE | 7 leaflet.minicharts-0.2.0/leaflet.minicharts/NEWS |only leaflet.minicharts-0.2.0/leaflet.minicharts/R/add_flows.R |only leaflet.minicharts-0.2.0/leaflet.minicharts/R/add_minicharts.R | 209 ++++++---- leaflet.minicharts-0.2.0/leaflet.minicharts/R/data-doc.R | 21 - leaflet.minicharts-0.2.0/leaflet.minicharts/R/make_options.R |only leaflet.minicharts-0.2.0/leaflet.minicharts/R/minicharts_deps.R |only leaflet.minicharts-0.2.0/leaflet.minicharts/R/prepare_args.R |only leaflet.minicharts-0.2.0/leaflet.minicharts/R/zzz.R | 4 leaflet.minicharts-0.2.0/leaflet.minicharts/README.md | 29 + leaflet.minicharts-0.2.0/leaflet.minicharts/data/d3.schemeCategory10.rda |only leaflet.minicharts-0.2.0/leaflet.minicharts/data/eco2mix.rda |binary leaflet.minicharts-0.2.0/leaflet.minicharts/data/eco2mixBalance.rda |only leaflet.minicharts-0.2.0/leaflet.minicharts/inst/doc/introduction.R | 112 ++--- leaflet.minicharts-0.2.0/leaflet.minicharts/inst/doc/introduction.Rmd | 142 +++--- leaflet.minicharts-0.2.0/leaflet.minicharts/inst/doc/introduction.html | 179 +++----- leaflet.minicharts-0.2.0/leaflet.minicharts/inst/font-awesome-4.7.0 |only leaflet.minicharts-0.2.0/leaflet.minicharts/inst/leaflet.minicharts.min.js |only leaflet.minicharts-0.2.0/leaflet.minicharts/inst/timeslider.css |only leaflet.minicharts-0.2.0/leaflet.minicharts/man/addFlows.Rd |only leaflet.minicharts-0.2.0/leaflet.minicharts/man/addMinicharts.Rd | 88 +++- leaflet.minicharts-0.2.0/leaflet.minicharts/man/d3.schemeCategory10.Rd |only leaflet.minicharts-0.2.0/leaflet.minicharts/man/eco2mix.Rd | 9 leaflet.minicharts-0.2.0/leaflet.minicharts/vignettes/barcharts.png |only leaflet.minicharts-0.2.0/leaflet.minicharts/vignettes/bubblecharts.png |only leaflet.minicharts-0.2.0/leaflet.minicharts/vignettes/introduction.Rmd | 140 +++--- leaflet.minicharts-0.2.0/leaflet.minicharts/vignettes/piecharts.png |only 35 files changed, 533 insertions(+), 467 deletions(-)
More information about leaflet.minicharts at CRAN
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Title: Text Corpus Analysis
Description: Text corpus data analysis, with full support for UTF8-encoded Unicode text. The package provides the ability to seamlessly read and process text from large JSON files without holding all of the data in memory simultaneously.
Author: Patrick O. Perry [aut, cre],
Martin Porter and Richard Boulton [ctb, cph] (Snowball),
Unicode, Inc. [ctb, cph] (Unicode Character Database)
Maintainer: Patrick O. Perry <pperry@stern.nyu.edu>
Diff between corpus versions 0.3.0 dated 2017-05-04 and 0.3.1 dated 2017-05-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/corpus/src/census.c | 2 +- src/corpus/src/main.c | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Wrappers for 'tidyr::gather()' and 'tidyr::spread()'
Description: Supplies deliberately verbose wrappers for 'tidyr::gather()' and 'tidyr::spread()', and an explanatory vignette. Useful for training and for enforcing preconditions.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
Diff between cdata versions 0.1.0 dated 2017-03-29 and 0.1.1 dated 2017-05-05
DESCRIPTION | 9 +++++---- MD5 | 25 +++++++++++++------------ NAMESPACE | 4 ++++ NEWS.md | 6 +++++- R/RowsColumns.R | 38 ++++++++++++++++++++++++++------------ README.md | 22 +++++++++++++++++++++- build/vignette.rds |binary inst/doc/RowsAndColumns.R | 12 ++++++------ inst/doc/RowsAndColumns.Rmd | 14 +++++++------- inst/doc/RowsAndColumns.html | 22 +++++++++++----------- man/moveValuesToColumns.Rd | 5 +---- man/moveValuesToRows.Rd | 5 +---- vignettes/RowsAndColumns.Rmd | 14 +++++++------- vignettes/cdata.png |only 14 files changed, 107 insertions(+), 69 deletions(-)
Title: An API Wrapper for the Bureau of Labor Statistics (BLS)
Description: Scrapes various data from <https://www.bls.gov/>. The Bureau of Labor Statistics is the statistical branch of the United States Department of Labor. The package has additional functions to help parse, analyze and visualize the data.
Author: Kris Eberwein [aut, cre]
Maintainer: Kris Eberwein <eberwein@knights.ucf.edu>
Diff between blscrapeR versions 2.1.2 dated 2017-02-04 and 2.1.4 dated 2017-05-05
blscrapeR-2.1.2/blscrapeR/tests/testthat/test_bls_csv.R |only blscrapeR-2.1.4/blscrapeR/DESCRIPTION | 10 - blscrapeR-2.1.4/blscrapeR/MD5 | 88 +++++----- blscrapeR-2.1.4/blscrapeR/NAMESPACE | 4 blscrapeR-2.1.4/blscrapeR/NEWS.md | 18 ++ blscrapeR-2.1.4/blscrapeR/R/dateCast.R | 9 - blscrapeR-2.1.4/blscrapeR/R/get_bls_county.R | 18 +- blscrapeR-2.1.4/blscrapeR/R/get_bls_state.R | 14 + blscrapeR-2.1.4/blscrapeR/R/quick_functions.R | 21 ++ blscrapeR-2.1.4/blscrapeR/R/utils.R | 31 +++ blscrapeR-2.1.4/blscrapeR/README.md | 70 ++++++- blscrapeR-2.1.4/blscrapeR/build/vignette.rds |binary blscrapeR-2.1.4/blscrapeR/inst/doc/Employment_and_Unemployment.R | 74 ++++---- blscrapeR-2.1.4/blscrapeR/inst/doc/Employment_and_Unemployment.Rmd | 74 ++++---- blscrapeR-2.1.4/blscrapeR/inst/doc/Employment_and_Unemployment.html | 81 ++++----- blscrapeR-2.1.4/blscrapeR/inst/doc/Inflation_and_Prices.html | 12 - blscrapeR-2.1.4/blscrapeR/inst/doc/Mapping_BLS_Data.html | 28 +-- blscrapeR-2.1.4/blscrapeR/inst/doc/Pay_and_Benefits.html | 16 - blscrapeR-2.1.4/blscrapeR/inst/doc/QCEW_API.html | 12 - blscrapeR-2.1.4/blscrapeR/inst/doc/qcew.html | 12 - blscrapeR-2.1.4/blscrapeR/man/area_titles.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/bls_api.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/bls_map_county.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/bls_map_state.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/compound_pipe.Rd |only blscrapeR-2.1.4/blscrapeR/man/county_fips.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/county_map_data.Rd | 2 blscrapeR-2.1.4/blscrapeR/man/dateCast.Rd | 7 blscrapeR-2.1.4/blscrapeR/man/get_bls_county.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/get_bls_state.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/inflation_adjust.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/niacs.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/pipe.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/qcew_api.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/quick_employed_level.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/quick_employed_rate.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/quick_laborForce_level.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/quick_laborForce_rate.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/quick_nonfarm_employed.Rd |only blscrapeR-2.1.4/blscrapeR/man/quick_unemp_level.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/quick_unemp_rate.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/set_bls_key.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/size_titles.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/state_fips.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/state_map_data.Rd | 1 blscrapeR-2.1.4/blscrapeR/man/urlExists.Rd |only blscrapeR-2.1.4/blscrapeR/vignettes/Employment_and_Unemployment.Rmd | 74 ++++---- 47 files changed, 415 insertions(+), 281 deletions(-)
Title: Performs a BLP Demand Estimation
Description: Provides the estimation algorithm to perform the demand estimation described in Berry, Levinsohn and Pakes (1995) <DOI:10.2307/2171802> . The routine uses analytic gradients and offers a large number of implemented integration methods and optimization routines.
Author: Daniel Brunner (aut), Constantin Weiser (ctr), Andre Romahn (ctr)
Maintainer: Daniel Brunner <daniel.brunner@hhu.de>
Diff between BLPestimatoR versions 0.1.2 dated 2017-03-16 and 0.1.4 dated 2017-05-05
DESCRIPTION | 6 ++-- MD5 | 6 ++-- R/blpFunctions.R | 64 ++++++++++++++++++++++++++++++++------------ man/BLPestimatoR-package.Rd | 4 +- 4 files changed, 55 insertions(+), 25 deletions(-)
Title: Contrasts in Mixed Effects for EMMIX Model with Random Effects 2
Description: For forming contrasts in the mixed effects for mixtures of linear mixed models fitted to the gene profiles.
Author: Angus Ng, Geoff McLachlan, Kui Wang.
Maintainer: Andrew Jones <andrewthomasjones@gmail.com>
Diff between EMMIXcontrasts2 versions 0.0.1 dated 2017-05-03 and 0.1.2 dated 2017-05-05
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++-- src/density2.f | 2 +- src/emmixfdr.c | 4 ++-- 5 files changed, 12 insertions(+), 12 deletions(-)
More information about EMMIXcontrasts2 at CRAN
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