Title: Tools for the Bayesian Discount Prior Function
Description: Functions for data augmentation using the
Bayesian discount prior function for 1 arm and 2 arm clinical trials.
Author: Shawn Balcome [cre],
Donnie Musgrove [aut],
Tarek Haddad [aut],
Christopher Jackson [ctb] (For the ppexp R code that was ported to
C++.)
Maintainer: Shawn Balcome <sbalcome@mdic.org>
Diff between bayesDP versions 1.1.0 dated 2017-05-03 and 1.1.1 dated 2017-05-14
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 4 ++-- README.md | 4 ++++ build/vignette.rds |binary inst/doc/bdpbinomial-vignette.Rmd | 4 ++-- inst/doc/bdpbinomial-vignette.html | 8 ++++---- inst/doc/bdpnormal-vignette.Rmd | 4 ++-- inst/doc/bdpnormal-vignette.html | 8 ++++---- inst/doc/bdpsurvival-vignette.Rmd | 4 ++-- inst/doc/bdpsurvival-vignette.html | 8 ++++---- vignettes/bdpbinomial-vignette.Rmd | 4 ++-- vignettes/bdpnormal-vignette.Rmd | 4 ++-- vignettes/bdpsurvival-vignette.Rmd | 4 ++-- 14 files changed, 47 insertions(+), 43 deletions(-)
Title: Tools for Working with ICD-9 and ICD-10 Codes, and Finding
Comorbidities
Description: Calculate comorbidities, Charlson scores, perform fast and accurate
validation, conversion, manipulation, filtering and comparison of ICD-9 and
ICD-10 codes. Common ambiguities and code formats are handled. This
package enables a work flow from raw lists of ICD codes in hospital
billing databases to comorbidities. ICD-9 and ICD-10 comorbidity mappings
from Quan (Deyo and Elixhauser versions), Elixhauser and AHRQ included. This
package replaces 'icd9', which should be uninstalled.
Author: Jack O. Wasey [aut, cre, cph],
William Murphy [ctb] (Van Walraven scores),
R Core Team [ctb, cph] (m4 macro for OpenMP detection in configure)
Maintainer: Jack O. Wasey <jack@jackwasey.com>
Diff between icd versions 2.1 dated 2016-09-02 and 2.2 dated 2017-05-14
icd-2.1/icd/R/deprecated.R |only icd-2.1/icd/R/generate_deprecated_data.R |only icd-2.1/icd/data/deprecated.RData |only icd-2.1/icd/data/icd9Chapters.rda |only icd-2.1/icd/data/icd9ChaptersMajor.RData |only icd-2.1/icd/data/icd9ChaptersSub.RData |only icd-2.1/icd/man/expand_range_worker.Rd |only icd-2.1/icd/man/fetch_rtf_year.Rd |only icd-2.1/icd/man/fix_rtf_duplicates.Rd |only icd-2.1/icd/man/fix_rtf_quirks_2015.Rd |only icd-2.1/icd/man/fix_unicode.Rd |only icd-2.1/icd/man/generate_deprecated_data.Rd |only icd-2.1/icd/man/generate_sysdata.Rd |only icd-2.1/icd/man/icd9Charlson.Rd |only icd-2.1/icd/man/icd9Children.Rd |only icd-2.1/icd/man/icd9Comorbid.Rd |only icd-2.1/icd/man/icd9ComorbidMatToDf.Rd |only icd-2.1/icd/man/icd9Condense.Rd |only icd-2.1/icd/man/icd9Count.Rd |only icd-2.1/icd/man/icd9DecimalToParts.Rd |only icd-2.1/icd/man/icd9DiffComorbid.Rd |only icd-2.1/icd/man/icd9ExpandRange.Rd |only icd-2.1/icd/man/icd9Explain.Rd |only icd-2.1/icd/man/icd9FilterValid.Rd |only icd-2.1/icd/man/icd9GetChapters.Rd |only icd-2.1/icd/man/icd9GetMajor.Rd |only icd-2.1/icd/man/icd9GetValid.Rd |only icd-2.1/icd/man/icd9IsBillable.Rd |only icd-2.1/icd/man/icd9IsN.Rd |only icd-2.1/icd/man/icd9IsReal.Rd |only icd-2.1/icd/man/icd9IsValidMapping.Rd |only icd-2.1/icd/man/icd9LongToWide.Rd |only icd-2.1/icd/man/icd9Sort.Rd |only icd-2.1/icd/man/icd9Valid.Rd |only icd-2.1/icd/man/icd9VanWalraven.Rd |only icd-2.1/icd/man/icd_deprecated.Rd |only icd-2.1/icd/man/icd_get_missing_kids.Rd |only icd-2.1/icd/man/parse_rtf_lines.Rd |only icd-2.1/icd/man/parse_rtf_year.Rd |only icd-2.1/icd/src/class.cpp |only icd-2.1/icd/src/class.h |only icd-2.1/icd/tests/test-current-no-comorbid.R |only icd-2.1/icd/tests/test-current-only-comorbid.R |only icd-2.1/icd/tests/test-deprecated.R |only icd-2.1/icd/tests/testthat/helper-deprecated.R |only icd-2.1/icd/tests/testthat/test-current-attr.R |only icd-2.1/icd/tests/testthat/test-current-billable.R |only icd-2.1/icd/tests/testthat/test-current-children-icd10.R |only icd-2.1/icd/tests/testthat/test-current-class.R |only icd-2.1/icd/tests/testthat/test-current-comorbid-calcs-icd10.R |only icd-2.1/icd/tests/testthat/test-current-comorbid-calcs-icd9.R |only icd-2.1/icd/tests/testthat/test-current-comorbid-maps-icd10.R |only icd-2.1/icd/tests/testthat/test-current-comorbid-maps-icd9.R |only icd-2.1/icd/tests/testthat/test-current-condense.R |only icd-2.1/icd/tests/testthat/test-current-convert.R |only icd-2.1/icd/tests/testthat/test-current-cpp.R |only icd-2.1/icd/tests/testthat/test-current-examples.R |only icd-2.1/icd/tests/testthat/test-current-explain-table.R |only icd-2.1/icd/tests/testthat/test-current-explain.R |only icd-2.1/icd/tests/testthat/test-current-filter-icd10.R |only icd-2.1/icd/tests/testthat/test-current-filter-poa.R |only icd-2.1/icd/tests/testthat/test-current-guess.R |only icd-2.1/icd/tests/testthat/test-current-hcc.R |only icd-2.1/icd/tests/testthat/test-current-hierarchy.R |only icd-2.1/icd/tests/testthat/test-current-is.R |only icd-2.1/icd/tests/testthat/test-current-lints.R |only icd-2.1/icd/tests/testthat/test-current-longtowide.R |only icd-2.1/icd/tests/testthat/test-current-manip.R |only icd-2.1/icd/tests/testthat/test-current-openmp.R |only icd-2.1/icd/tests/testthat/test-current-parse-icd10.R |only icd-2.1/icd/tests/testthat/test-current-parse-icd9.R |only icd-2.1/icd/tests/testthat/test-current-parse.R |only icd-2.1/icd/tests/testthat/test-current-ranges-icd10.R |only icd-2.1/icd/tests/testthat/test-current-ranges.R |only icd-2.1/icd/tests/testthat/test-current-reshape.R |only icd-2.1/icd/tests/testthat/test-current-sample-data.R |only icd-2.1/icd/tests/testthat/test-current-sas.R |only icd-2.1/icd/tests/testthat/test-current-score.R |only icd-2.1/icd/tests/testthat/test-current-spell.R |only icd-2.1/icd/tests/testthat/test-current-util.R |only icd-2.1/icd/tests/testthat/test-current-valid-icd10.R |only icd-2.1/icd/tests/testthat/test-current-valid.R |only icd-2.1/icd/tests/testthat/test-current-who-icd10.R |only icd-2.1/icd/tests/testthat/test-deprecated-LongToWide.R |only icd-2.1/icd/tests/testthat/test-deprecated-billable.R |only icd-2.1/icd/tests/testthat/test-deprecated-comorbid-calcs.R |only icd-2.1/icd/tests/testthat/test-deprecated-comorbid.R |only icd-2.1/icd/tests/testthat/test-deprecated-condense.R |only icd-2.1/icd/tests/testthat/test-deprecated-convert.R |only icd-2.1/icd/tests/testthat/test-deprecated-explain.R |only icd-2.1/icd/tests/testthat/test-deprecated-filter.R |only icd-2.1/icd/tests/testthat/test-deprecated-hierarchy.R |only icd-2.1/icd/tests/testthat/test-deprecated-is.R |only icd-2.1/icd/tests/testthat/test-deprecated-manip.R |only icd-2.1/icd/tests/testthat/test-deprecated-openmp.R |only icd-2.1/icd/tests/testthat/test-deprecated-parse.R |only icd-2.1/icd/tests/testthat/test-deprecated-ranges.R |only icd-2.1/icd/tests/testthat/test-deprecated-reshape.R |only icd-2.1/icd/tests/testthat/test-deprecated-sas.R |only icd-2.1/icd/tests/testthat/test-deprecated-score.R |only icd-2.1/icd/tests/testthat/test-deprecated-util.R |only icd-2.1/icd/tests/testthat/test-deprecated-valid.R |only icd-2.2/icd/DESCRIPTION | 14 icd-2.2/icd/MD5 | 669 +-- icd-2.2/icd/NAMESPACE | 107 icd-2.2/icd/R/RcppExports.R | 272 - icd-2.2/icd/R/as_char_no_warn.R |only icd-2.2/icd/R/attr.R | 35 icd-2.2/icd/R/children.R | 13 icd-2.2/icd/R/class.R | 2 icd-2.2/icd/R/comorbid.R | 74 icd-2.2/icd/R/condense.R | 16 icd-2.2/icd/R/convert.R | 43 icd-2.2/icd/R/datadocs.R | 109 icd-2.2/icd/R/diff_comorbid.R | 2 icd-2.2/icd/R/env.R |only icd-2.2/icd/R/explain-table.R | 4 icd-2.2/icd/R/explain.R | 111 icd-2.2/icd/R/factor_nosort.R |only icd-2.2/icd/R/filter.R | 4 icd-2.2/icd/R/generate_mappings.R | 22 icd-2.2/icd/R/generate_spelling.R | 8 icd-2.2/icd/R/generate_sysdata.R | 212 icd-2.2/icd/R/guess.R | 2 icd-2.2/icd/R/icd-package.R | 24 icd-2.2/icd/R/manip.R | 12 icd-2.2/icd/R/parse-comorbid.R | 54 icd-2.2/icd/R/parse-icd10.R | 33 icd-2.2/icd/R/parse-icd10cm-xml.R | 20 icd-2.2/icd/R/parse-rtf.R | 451 +- icd-2.2/icd/R/parse.R | 130 icd-2.2/icd/R/print.icd_comorbidity_map.R | 2 icd-2.2/icd/R/ranges.R | 196 icd-2.2/icd/R/real.R | 9 icd-2.2/icd/R/sas.R | 4 icd-2.2/icd/R/save_in_data_dir.R |only icd-2.2/icd/R/score.R | 2 icd-2.2/icd/R/sort.R | 5 icd-2.2/icd/R/sysdata.rda |binary icd-2.2/icd/R/to_data_raw.R |only icd-2.2/icd/R/unzip_single.R |only icd-2.2/icd/R/util-file.R | 143 icd-2.2/icd/R/util-test.R | 60 icd-2.2/icd/R/util.R | 171 icd-2.2/icd/R/valid.R | 4 icd-2.2/icd/R/zzz.R | 43 icd-2.2/icd/README.md | 19 icd-2.2/icd/build/vignette.rds |binary icd-2.2/icd/configure | 18 icd-2.2/icd/data/datalist | 6 icd-2.2/icd/data/icd10_map_ahrq.RData |binary icd-2.2/icd/data/icd10_map_cc.RData |binary icd-2.2/icd/data/icd10_map_elix.RData |binary icd-2.2/icd/data/icd10_map_quan_deyo.RData |binary icd-2.2/icd/data/icd10_map_quan_elix.RData |binary icd-2.2/icd/data/icd10_sub_chapters.RData |binary icd-2.2/icd/data/icd10cm2016.RData |binary icd-2.2/icd/data/icd9_map_ahrq.RData |binary icd-2.2/icd/data/icd9_map_cc.RData |binary icd-2.2/icd/data/icd9_map_elix.RData |binary icd-2.2/icd/data/icd9_map_quan_deyo.RData |binary icd-2.2/icd/data/icd9_map_quan_elix.RData |binary icd-2.2/icd/data/icd9_sources.RData |only icd-2.2/icd/data/icd9cm_billable.RData |binary icd-2.2/icd/data/icd9cm_hierarchy.RData |binary icd-2.2/icd/data/icd_chapters.rda |only icd-2.2/icd/data/mappingNames.rda |binary icd-2.2/icd/inst/doc/Charlson_and_other_scores.Rmd | 2 icd-2.2/icd/inst/doc/Charlson_and_other_scores.html | 21 icd-2.2/icd/inst/doc/icd-10.Rmd | 2 icd-2.2/icd/inst/doc/icd-10.html | 21 icd-2.2/icd/inst/doc/introduction.R | 14 icd-2.2/icd/inst/doc/introduction.Rmd | 24 icd-2.2/icd/inst/doc/introduction.html | 69 icd-2.2/icd/inst/include/icd.h | 8 icd-2.2/icd/inst/include/icd_RcppExports.h | 1232 +++-- icd-2.2/icd/man/apply_hier.Rd | 5 icd-2.2/icd/man/as.icd_short_diag.Rd | 45 icd-2.2/icd/man/as_char_no_warn.Rd | 3 icd-2.2/icd/man/chapter_to_desc_range.Rd | 5 icd-2.2/icd/man/combine.Rd | 5 icd-2.2/icd/man/condense_explain_table.Rd | 1 icd-2.2/icd/man/condense_explain_table_worker.Rd | 1 icd-2.2/icd/man/convert.Rd | 18 icd-2.2/icd/man/cr.Rd | 1 icd-2.2/icd/man/env_to_vec_flip.Rd |only icd-2.2/icd/man/expect_chap_equal.Rd | 1 icd-2.2/icd/man/expect_chap_present.Rd | 7 icd-2.2/icd/man/expect_equal_no_icd.Rd | 1 icd-2.2/icd/man/factor_nosort.Rd | 7 icd-2.2/icd/man/fastIntToString.Rd | 15 icd-2.2/icd/man/fixSubchapterNa.Rd | 1 icd-2.2/icd/man/generate_random_short_icd10cm_bill.Rd | 1 icd-2.2/icd/man/generate_random_short_icd9.Rd | 7 icd-2.2/icd/man/generate_spelling.Rd | 1 icd-2.2/icd/man/generate_uranium_pathology.Rd | 1 icd-2.2/icd/man/generate_vermont_dx.Rd | 1 icd-2.2/icd/man/get_non_ASCII.Rd | 7 icd-2.2/icd/man/get_visit_name.Rd | 1 icd-2.2/icd/man/grapes-eine-grapes.Rd |only icd-2.2/icd/man/icd-package.Rd | 52 icd-2.2/icd/man/icd10_chapters.Rd | 1 icd-2.2/icd/man/icd10_comorbid_parent_search.Rd | 3 icd-2.2/icd/man/icd10_comorbid_parent_search_cpp.Rd | 1 icd-2.2/icd/man/icd10_generate_map_quan_deyo.Rd | 1 icd-2.2/icd/man/icd10_generate_map_quan_elix.Rd | 1 icd-2.2/icd/man/icd10_parse_cc.Rd | 1 icd-2.2/icd/man/icd10_sub_chapters.Rd | 1 icd-2.2/icd/man/icd10cm2016.Rd | 1 icd-2.2/icd/man/icd10cm_extract_sub_chapters.Rd | 3 icd-2.2/icd/man/icd10cm_get_all_defined.Rd | 3 icd-2.2/icd/man/icd9AppendMinors.Rd |only icd-2.2/icd/man/icd9ChildrenShort11.Rd |only icd-2.2/icd/man/icd9ChildrenShortStd.Rd |only icd-2.2/icd/man/icd9MajMinToCode.Rd | 41 icd-2.2/icd/man/icd9MajMinToShortStd.Rd |only icd-2.2/icd/man/icd9RandomShort.Rd | 5 icd-2.2/icd/man/icd9_add_leading_zeroes_cpp.Rd | 1 icd-2.2/icd/man/icd9_chapters.Rd | 6 icd-2.2/icd/man/icd9_chapters_to_map.Rd | 3 icd-2.2/icd/man/icd9_drop_leading_zeroes.Rd | 5 icd-2.2/icd/man/icd9_expand_range_worker.Rd |only icd-2.2/icd/man/icd9_extract_alpha_numeric.Rd | 1 icd-2.2/icd/man/icd9_fetch_ahrq_sas.Rd | 1 icd-2.2/icd/man/icd9_generate_all_.Rd |only icd-2.2/icd/man/icd9_generate_map_elix.Rd | 11 icd-2.2/icd/man/icd9_generate_map_quan_elix.Rd | 10 icd-2.2/icd/man/icd9_generate_sources.Rd |only icd-2.2/icd/man/icd9_get_chapters.Rd | 5 icd-2.2/icd/man/icd9_is_n.Rd | 2 icd-2.2/icd/man/icd9_is_n_cpp.Rd | 3 icd-2.2/icd/man/icd9_map_ahrq.Rd | 4 icd-2.2/icd/man/icd9_map_elix.Rd | 4 icd-2.2/icd/man/icd9_map_hcc.Rd | 35 icd-2.2/icd/man/icd9_map_quan_deyo.Rd | 4 icd-2.2/icd/man/icd9_map_quan_elix.Rd | 4 icd-2.2/icd/man/icd9_order_short.Rd | 1 icd-2.2/icd/man/icd9_parse_ahrq_sas.Rd | 3 icd-2.2/icd/man/icd9_parse_cc.Rd | 5 icd-2.2/icd/man/icd9_parse_leaf_desc_ver.Rd | 1 icd-2.2/icd/man/icd9_parse_quan_deyo_sas.Rd | 9 icd-2.2/icd/man/icd9_sources.Rd |only icd-2.2/icd/man/icd9cm_billable.Rd | 3 icd-2.2/icd/man/icd9cm_generate_chapters_hierarchy.Rd | 7 icd-2.2/icd/man/icd9cm_get_billable.Rd | 1 icd-2.2/icd/man/icd9cm_hierarchy.Rd | 5 icd-2.2/icd/man/icd9cm_hierarchy_hotfix.Rd |only icd-2.2/icd/man/icd9cm_latest_edition.Rd | 1 icd-2.2/icd/man/icd_charlson.Rd | 2 icd-2.2/icd/man/icd_children.Rd | 6 icd-2.2/icd/man/icd_children_defined.Rd | 2 icd-2.2/icd/man/icd_classes_conflict.Rd | 1 icd-2.2/icd/man/icd_classes_ordered.Rd | 4 icd-2.2/icd/man/icd_comorbid.Rd | 55 icd-2.2/icd/man/icd_comorbid_df_to_mat.Rd | 1 icd-2.2/icd/man/icd_comorbid_mat_to_df.Rd | 1 icd-2.2/icd/man/icd_condense.Rd | 15 icd-2.2/icd/man/icd_count_codes.Rd | 1 icd-2.2/icd/man/icd_count_codes_wide.Rd | 1 icd-2.2/icd/man/icd_count_comorbid.Rd | 1 icd-2.2/icd/man/icd_decimal_to_parts.Rd | 14 icd-2.2/icd/man/icd_decimal_to_short.Rd | 2 icd-2.2/icd/man/icd_diff_comorbid.Rd | 2 icd-2.2/icd/man/icd_expand_minor.Rd | 3 icd-2.2/icd/man/icd_expand_range.Rd | 26 icd-2.2/icd/man/icd_expand_range.icd10cm.Rd | 1 icd-2.2/icd/man/icd_expand_range_major.Rd | 2 icd-2.2/icd/man/icd_explain.Rd | 17 icd-2.2/icd/man/icd_explain_table.Rd | 6 icd-2.2/icd/man/icd_explain_table_worker.Rd | 1 icd-2.2/icd/man/icd_filter_poa.Rd | 6 icd-2.2/icd/man/icd_filter_valid.Rd | 10 icd-2.2/icd/man/icd_generate_sysdata.Rd |only icd-2.2/icd/man/icd_get_billable.Rd | 8 icd-2.2/icd/man/icd_get_defined.Rd | 1 icd-2.2/icd/man/icd_get_invalid.Rd | 4 icd-2.2/icd/man/icd_get_major.Rd | 8 icd-2.2/icd/man/icd_get_valid.Rd | 4 icd-2.2/icd/man/icd_guess_pair_version.Rd | 1 icd-2.2/icd/man/icd_guess_short.Rd | 1 icd-2.2/icd/man/icd_guess_short_update.Rd | 1 icd-2.2/icd/man/icd_guess_version.Rd | 8 icd-2.2/icd/man/icd_guess_version_update.Rd | 1 icd-2.2/icd/man/icd_in_reference_code.Rd | 3 icd-2.2/icd/man/icd_is_billable.Rd | 8 icd-2.2/icd/man/icd_is_defined.Rd | 8 icd-2.2/icd/man/icd_is_major.Rd | 2 icd-2.2/icd/man/icd_is_valid.Rd | 3 icd-2.2/icd/man/icd_is_valid_major.Rd | 10 icd-2.2/icd/man/icd_long_to_wide.Rd | 1 icd-2.2/icd/man/icd_names_elix.Rd | 37 icd-2.2/icd/man/icd_parse_cc_hierarchy.Rd | 7 icd-2.2/icd/man/icd_poa_choices.Rd | 8 icd-2.2/icd/man/icd_short_to_decimal.Rd | 4 icd-2.2/icd/man/icd_short_to_parts.Rd | 14 icd-2.2/icd/man/icd_sort.Rd | 2 icd-2.2/icd/man/icd_update_everything.Rd | 1 icd-2.2/icd/man/icd_van_walraven.Rd | 8 icd-2.2/icd/man/icd_wide_to_long.Rd | 1 icd-2.2/icd/man/is.icd9.Rd | 11 icd-2.2/icd/man/logical_to_binary.Rd | 1 icd-2.2/icd/man/lookupComorbidByChunkFor.Rd |only icd-2.2/icd/man/my_test_check.Rd | 1 icd-2.2/icd/man/named_list.Rd |only icd-2.2/icd/man/parse_leaf_desc_icd9cm_v27.Rd | 1 icd-2.2/icd/man/parse_leaf_descriptions_all.Rd | 1 icd-2.2/icd/man/print.icd_comorbidity_map.Rd | 1 icd-2.2/icd/man/random_string.Rd | 1 icd-2.2/icd/man/re_just.Rd | 2 icd-2.2/icd/man/regexec32.Rd |only icd-2.2/icd/man/rtf_fetch_year.Rd |only icd-2.2/icd/man/rtf_filter_excludes.Rd |only icd-2.2/icd/man/rtf_fix_duplicates.Rd |only icd-2.2/icd/man/rtf_fix_quirks_2015.Rd |only icd-2.2/icd/man/rtf_fix_unicode.Rd |only icd-2.2/icd/man/rtf_generate_fourth_lookup.Rd | 1 icd-2.2/icd/man/rtf_lookup_fourth.Rd | 1 icd-2.2/icd/man/rtf_main_filter.Rd |only icd-2.2/icd/man/rtf_parse_fifth_digit_range.Rd | 1 icd-2.2/icd/man/rtf_parse_lines.Rd |only icd-2.2/icd/man/rtf_parse_year.Rd |only icd-2.2/icd/man/rtf_strip.Rd | 5 icd-2.2/icd/man/sas_extract_let_strings.Rd | 1 icd-2.2/icd/man/sas_format_extract.Rd | 2 icd-2.2/icd/man/sas_parse_assignments.Rd | 1 icd-2.2/icd/man/save_in_data_dir.Rd | 25 icd-2.2/icd/man/set_full_test_options.Rd | 7 icd-2.2/icd/man/set_icd_class.Rd | 19 icd-2.2/icd/man/setup_test_check.Rd | 10 icd-2.2/icd/man/shortcode_icd9.Rd | 3 icd-2.2/icd/man/show_test_options.Rd | 1 icd-2.2/icd/man/str_extract.Rd | 7 icd-2.2/icd/man/str_match_all.Rd |only icd-2.2/icd/man/str_pair_match.Rd | 4 icd-2.2/icd/man/strim.Rd | 1 icd-2.2/icd/man/strip.Rd | 1 icd-2.2/icd/man/sub-sub-.icd_comorbidity_map.Rd | 1 icd-2.2/icd/man/subset_icd.Rd | 7 icd-2.2/icd/man/swap_names_vals.Rd | 1 icd-2.2/icd/man/trim.Rd | 1 icd-2.2/icd/man/unzip_single.Rd | 12 icd-2.2/icd/man/unzip_to_data_raw.Rd | 20 icd-2.2/icd/man/uranium_pathology.Rd | 1 icd-2.2/icd/man/vec_to_env_true.Rd |only icd-2.2/icd/man/vermont_dx.Rd | 1 icd-2.2/icd/src/Makevars.win | 3 icd-2.2/icd/src/Makevars.win64 | 3 icd-2.2/icd/src/RcppExports.cpp | 2188 +++++----- icd-2.2/icd/src/appendMinor.cpp |only icd-2.2/icd/src/appendMinor.h |only icd-2.2/icd/src/attr.cpp | 46 icd-2.2/icd/src/attr.h | 8 icd-2.2/icd/src/children.cpp | 18 icd-2.2/icd/src/comorbid.cpp | 8 icd-2.2/icd/src/comorbidCommon.cpp | 55 icd-2.2/icd/src/comorbidIcd10.cpp | 11 icd-2.2/icd/src/comorbidIcd10.h | 2 icd-2.2/icd/src/comorbidSetup.cpp | 2 icd-2.2/icd/src/config.h.win | 2 icd-2.2/icd/src/convert.cpp | 298 - icd-2.2/icd/src/convert.h | 24 icd-2.2/icd/src/convert_alt.cpp | 86 icd-2.2/icd/src/convert_alt.h |only icd-2.2/icd/src/fastIntToString.cpp |only icd-2.2/icd/src/fastIntToString.h |only icd-2.2/icd/src/guess.cpp | 6 icd-2.2/icd/src/guess.h | 2 icd-2.2/icd/src/icd_types.h |only icd-2.2/icd/src/is.cpp | 10 icd-2.2/icd/src/is.h | 9 icd-2.2/icd/src/local.h | 108 icd-2.2/icd/src/longToWide.cpp | 15 icd-2.2/icd/src/manip.cpp | 24 icd-2.2/icd/src/manip.h | 9 icd-2.2/icd/src/manip_alt.cpp | 6 icd-2.2/icd/src/range-const.h |only icd-2.2/icd/src/ranges.cpp | 304 - icd-2.2/icd/src/ranges.h | 15 icd-2.2/icd/src/ranges_alt.cpp |only icd-2.2/icd/src/registration.c |only icd-2.2/icd/src/test-cpp.cpp | 139 icd-2.2/icd/src/util.cpp | 81 icd-2.2/icd/src/util.h | 15 icd-2.2/icd/tests/test-all.R |only icd-2.2/icd/tests/testthat/helper-base.R | 22 icd-2.2/icd/tests/testthat/test-attr.R |only icd-2.2/icd/tests/testthat/test-billable.R |only icd-2.2/icd/tests/testthat/test-children-icd10.R |only icd-2.2/icd/tests/testthat/test-class.R |only icd-2.2/icd/tests/testthat/test-comorbid-calcs-icd10.R |only icd-2.2/icd/tests/testthat/test-comorbid-calcs-icd9.R |only icd-2.2/icd/tests/testthat/test-comorbid-maps-icd10.R |only icd-2.2/icd/tests/testthat/test-comorbid-maps-icd9.R |only icd-2.2/icd/tests/testthat/test-condense.R |only icd-2.2/icd/tests/testthat/test-convert.R |only icd-2.2/icd/tests/testthat/test-cpp.R |only icd-2.2/icd/tests/testthat/test-examples.R |only icd-2.2/icd/tests/testthat/test-explain-table.R |only icd-2.2/icd/tests/testthat/test-explain.R |only icd-2.2/icd/tests/testthat/test-filter-icd10.R |only icd-2.2/icd/tests/testthat/test-filter-poa.R |only icd-2.2/icd/tests/testthat/test-future-explain-icd10.R | 2 icd-2.2/icd/tests/testthat/test-guess.R |only icd-2.2/icd/tests/testthat/test-hcc.R |only icd-2.2/icd/tests/testthat/test-hierarchy.R |only icd-2.2/icd/tests/testthat/test-is.R |only icd-2.2/icd/tests/testthat/test-lints.R |only icd-2.2/icd/tests/testthat/test-longtowide.R |only icd-2.2/icd/tests/testthat/test-manip.R |only icd-2.2/icd/tests/testthat/test-openmp.R |only icd-2.2/icd/tests/testthat/test-parse-icd10.R |only icd-2.2/icd/tests/testthat/test-parse-icd9.R |only icd-2.2/icd/tests/testthat/test-parse.R |only icd-2.2/icd/tests/testthat/test-ranges-icd10.R |only icd-2.2/icd/tests/testthat/test-ranges.R |only icd-2.2/icd/tests/testthat/test-reshape.R |only icd-2.2/icd/tests/testthat/test-sample-data.R |only icd-2.2/icd/tests/testthat/test-sas.R |only icd-2.2/icd/tests/testthat/test-score.R |only icd-2.2/icd/tests/testthat/test-spell.R |only icd-2.2/icd/tests/testthat/test-util.R |only icd-2.2/icd/tests/testthat/test-valid-icd10.R |only icd-2.2/icd/tests/testthat/test-valid.R |only icd-2.2/icd/tests/testthat/test-who-icd10.R |only icd-2.2/icd/vignettes/Charlson_and_other_scores.Rmd | 2 icd-2.2/icd/vignettes/icd-10.Rmd | 2 icd-2.2/icd/vignettes/introduction.Rmd | 24 427 files changed, 4549 insertions(+), 4389 deletions(-)
Title: Immunoglobulin Somatic Hypermutation Analysis
Description: Provides a computational framework for Bayesian estimation of
antigen-driven selection in immunoglobulin (Ig) sequences, providing an
intuitive means of analyzing selection by quantifying the degree of
selective pressure. Also provides tools to profile mutations in Ig
sequences, build models of somatic hypermutation (SHM) in Ig sequences,
and make model-dependent distance comparisons of Ig repertoires.
Author: Mohamed Uduman [aut],
Gur Yaari [aut],
Namita Gupta [aut],
Jason Vander Heiden [aut, cre],
Ang Cui [ctb],
Susanna Marquez [ctb],
Julian Zhou [ctb],
Nima Nouri [ctb],
Steven Kleinstein [aut, cph]
Maintainer: Jason Vander Heiden <jason.vanderheiden@yale.edu>
Diff between shazam versions 0.1.6 dated 2017-05-12 and 0.1.7 dated 2017-05-14
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 9 +++++++++ R/MutationProfiling.R | 4 ++-- R/TargetingModels.R | 4 +++- inst/doc/Baseline-Vignette.pdf |binary inst/doc/DistToNearest-Vignette.pdf |binary inst/doc/Mutation-Vignette.pdf |binary inst/doc/Targeting-Vignette.pdf |binary man/observedMutations.Rd | 2 +- man/plotTune.Rd | 4 +++- 11 files changed, 32 insertions(+), 19 deletions(-)
Title: Fluid Use of Big Data in R
Description: Methods to get a grip on working with remote data sources ('SQL' databases,
'sparklyr' 'Spark' 2.0.0 and above) through 'dplyr'. Adds convenience functions to make such tasks more like
working with an in-memory 'data.frame'. Results do depend on which 'dplyr' data service you use.
Author: John Mount, Nina Zumel
Maintainer: John Mount <jmount@win-vector.com>
Diff between replyr versions 0.2.5 dated 2017-04-14 and 0.3.01 dated 2017-05-14
DESCRIPTION | 10 +- MD5 | 84 ++++++++++---------- NAMESPACE | 6 + NEWS.md | 11 ++ R/addIds.R |only R/bind_rows.R | 130 ++++++++++++++++++++++++------- R/checkRank.R | 15 ++- R/coalesce.R | 10 +- R/expandColumn.R |only R/filter.R | 17 ++-- R/groupedApply.R | 48 ++++++++--- R/inTest.R | 17 ++-- R/land.R | 35 ++++---- R/quantile.R | 26 +++++- R/rowscols.R | 34 +++++--- R/serviceName.R | 47 ++++++++++- R/summary.R | 79 +++++++++++++++++- R/tempNameGenerator.R |only build/vignette.rds |binary inst/doc/BizarroPipe.html | 24 +++-- inst/doc/NArm.html | 15 +-- inst/doc/ParametricExample.Rmd | 4 inst/doc/ParametricExample.html | 12 +- inst/doc/coalesce.html | 26 +++--- inst/doc/letExample.html | 12 +- inst/doc/replyr.html | 14 +-- inst/doc/summary.html | 16 +-- man/expandColumn.Rd |only man/gapply.Rd | 17 ++-- man/makeTempNameGenerator.Rd |only man/replyr_add_ids.Rd |only man/replyr_bind_rows.Rd | 7 + man/replyr_check_ranks.Rd | 11 +- man/replyr_coalesce.Rd | 4 man/replyr_dataServiceName.Rd | 4 man/replyr_filter.Rd | 7 + man/replyr_get_src.Rd |only man/replyr_inTest.Rd | 8 + man/replyr_moveValuesToColumns.Rd | 11 +- man/replyr_moveValuesToRows.Rd | 7 + man/replyr_quantile.Rd | 7 + man/replyr_quantilec.Rd | 7 + man/replyr_split.Rd | 2 man/replyr_summary.Rd | 10 +- man/replyr_union_all.Rd |only tests/testthat/test_replyr_check_ranks.R | 3 vignettes/ParametricExample.Rmd | 4 47 files changed, 575 insertions(+), 226 deletions(-)
Title: Excerpt Structuring Comments from Your Code File and Set a Table
of Contents
Description: This is an R interface to the
python package 'excerpts' (<https://pypi.python.org/pypi/excerpts>).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <adc-r@arcor.de>
Diff between excerptr versions 1.0.2 dated 2017-05-02 and 1.1.0 dated 2017-05-14
DESCRIPTION | 10 ++-- INSTALL | 23 ++++------ MD5 | 22 ++++----- NEWS.md | 5 ++ R/internals.R | 5 +- README.md | 33 ++++++++++---- inst/doc/excerptr_Introduction.R | 20 ++++++--- inst/doc/excerptr_Introduction.Rmd | 26 ++++++++--- inst/doc/excerptr_Introduction.html | 80 ++++++++++++++++++++++++------------ inst/tests/testthat/test_basic.R | 44 +++++++++++++------ tests/testthat/test_basic.R | 44 +++++++++++++------ vignettes/excerptr_Introduction.Rmd | 26 ++++++++--- 12 files changed, 223 insertions(+), 115 deletions(-)
Title: A Bayesian Dose-Finding Design using Pharmacokinetics(PK) for
Phase I Clinical Trials
Description: Statistical methods involving PK measures are provided, in the dose allocation process during a Phase I clinical trials. These methods enter pharmacokinetics (PK) in the dose finding designs in different ways, including covariates models, dependent variable or hierarchical models. This package provides functions to generate data from several scenarios and functions to run simulations which their objective is to determine the maximum tolerated dose (MTD).
Author: Artemis Toumazi <artemis.toumazi@inserm.fr> , Moreno Ursino <moreno.ursino@inserm.fr> and Sarah Zohar <sarah.zohar@inserm.fr>
Maintainer: Artemis Toumazi <artemis.toumazi@inserm.fr>
Diff between dfpk versions 3.0.0 dated 2017-05-13 and 3.0.1 dated 2017-05-14
DESCRIPTION | 7 MD5 | 22 - R/AUC.estim.R | 30 - R/S4_classes.R | 710 +++++++++++++++++++++++----------------------- R/dtox.R | 118 +++---- R/nextDose.R | 160 +++++----- R/sim.data.R | 140 ++++----- exec/logit_cov2.stan | 8 exec/logit_reg_pkpop.stan | 2 exec/reg_auc2.stan | 2 src/include/models.hpp | 8 tools/make_cpp.R | 94 +++--- 12 files changed, 651 insertions(+), 650 deletions(-)
Title: Package Management Tool
Description: Tools to more conveniently perform tasks associated with
add-on packages. pacman conveniently wraps library and package
related functions and names them in an intuitive and consistent
fashion. It seeks to combine functionality from lower level
functions which can speed up workflow.
Author: Tyler Rinker [aut, cre, ctb],
Dason Kurkiewicz [aut, ctb],
Keith Hughitt [ctb],
Albert Wang [ctb],
Jim Hester [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between pacman versions 0.4.5 dated 2017-05-03 and 0.4.6 dated 2017-05-14
DESCRIPTION | 29 ++++++++++++++++------------- MD5 | 10 +++++----- NEWS | 16 ++++++++++++++++ R/p_install_gh.R | 8 ++++---- inst/CITATION | 4 ++-- inst/doc/Introduction_to_pacman.html | 20 ++++++++++---------- 6 files changed, 53 insertions(+), 34 deletions(-)
Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R.
The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange
with R. This provides a reliable and scalable foundation for statistical services or
building R web applications. The OpenCPU server runs either as a single-user development
server within the interactive R session, or as a multi-user Linux stack based on Apache2.
The entire system is fully open source and permissively licensed. The OpenCPU website
has detailed documentation and example apps.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencpu versions 1.6.1 dated 2016-05-18 and 2.0 dated 2017-05-14
opencpu-1.6.1/opencpu/R/bioc_load.R |only opencpu-1.6.1/opencpu/R/check.enabled.R |only opencpu-1.6.1/opencpu/R/cleanup.R |only opencpu-1.6.1/opencpu/R/cleanwin.R |only opencpu-1.6.1/opencpu/R/cmd_exists.R |only opencpu-1.6.1/opencpu/R/cran_load.R |only opencpu-1.6.1/opencpu/R/createconfigfile.R |only opencpu-1.6.1/opencpu/R/dir.move.R |only opencpu-1.6.1/opencpu/R/email.R |only opencpu-1.6.1/opencpu/R/emptyplot.R |only opencpu-1.6.1/opencpu/R/error2file.R |only opencpu-1.6.1/opencpu/R/errorif.R |only opencpu-1.6.1/opencpu/R/eval_current.R |only opencpu-1.6.1/opencpu/R/eval_fork.R |only opencpu-1.6.1/opencpu/R/find_aliases.R |only opencpu-1.6.1/opencpu/R/fixplot.R |only opencpu-1.6.1/opencpu/R/from.R |only opencpu-1.6.1/opencpu/R/getfromURL.R |only opencpu-1.6.1/opencpu/R/getlocalurl.R |only opencpu-1.6.1/opencpu/R/getrapache.R |only opencpu-1.6.1/opencpu/R/gettmpdir.R |only opencpu-1.6.1/opencpu/R/gist_list.R |only opencpu-1.6.1/opencpu/R/gist_load.R |only opencpu-1.6.1/opencpu/R/github_install.R |only opencpu-1.6.1/opencpu/R/github_list.R |only opencpu-1.6.1/opencpu/R/github_load.R |only opencpu-1.6.1/opencpu/R/gitsecret.R |only opencpu-1.6.1/opencpu/R/http_session_console.R |only opencpu-1.6.1/opencpu/R/httpget_bioc.R |only opencpu-1.6.1/opencpu/R/httpget_cran.R |only opencpu-1.6.1/opencpu/R/httpget_gist.R |only opencpu-1.6.1/opencpu/R/httpget_github.R |only opencpu-1.6.1/opencpu/R/httpget_user_apps.R |only opencpu-1.6.1/opencpu/R/httpuv_fork.R |only opencpu-1.6.1/opencpu/R/inittempdir.R |only opencpu-1.6.1/opencpu/R/is_windows.R |only opencpu-1.6.1/opencpu/R/isdangerous.R |only opencpu-1.6.1/opencpu/R/islazydata.R |only opencpu-1.6.1/opencpu/R/load_session_namespaces.R |only opencpu-1.6.1/opencpu/R/loadconfigs.R |only opencpu-1.6.1/opencpu/R/makelock.R |only opencpu-1.6.1/opencpu/R/mimelist.R |only opencpu-1.6.1/opencpu/R/onLoad.R |only opencpu-1.6.1/opencpu/R/opencpu.R |only opencpu-1.6.1/opencpu/R/parse_query.R |only opencpu-1.6.1/opencpu/R/printwithmax.R |only opencpu-1.6.1/opencpu/R/rapachehandler.R |only opencpu-1.6.1/opencpu/R/rhttpdhandler.R |only opencpu-1.6.1/opencpu/R/rstudioproxy.R |only opencpu-1.6.1/opencpu/R/saveDESCRIPTION.R |only opencpu-1.6.1/opencpu/R/send_index.R |only opencpu-1.6.1/opencpu/R/setLibPaths.R |only opencpu-1.6.1/opencpu/R/stop.R |only opencpu-1.6.1/opencpu/R/stoponwarn.R |only opencpu-1.6.1/opencpu/R/stub.R |only opencpu-1.6.1/opencpu/R/system_capture.R |only opencpu-1.6.1/opencpu/R/tryCatch_capture_stack.R |only opencpu-1.6.1/opencpu/R/try_rscript.R |only opencpu-1.6.1/opencpu/R/updatebioc.R |only opencpu-1.6.1/opencpu/R/updatecran.R |only opencpu-1.6.1/opencpu/R/updategithub.R |only opencpu-1.6.1/opencpu/R/userlibpath.R |only opencpu-1.6.1/opencpu/R/windir.R |only opencpu-1.6.1/opencpu/inst/doc/opencpu-server.R |only opencpu-1.6.1/opencpu/inst/doc/opencpu-server.Rnw |only opencpu-1.6.1/opencpu/inst/doc/opencpu-server.pdf |only opencpu-1.6.1/opencpu/man/cleanup.Rd |only opencpu-1.6.1/opencpu/man/opencpu.Rd |only opencpu-1.6.1/opencpu/man/rhttpd.Rd |only opencpu-1.6.1/opencpu/vignettes/opencpu-server.Rnw |only opencpu-2.0/opencpu/DESCRIPTION | 43 +-- opencpu-2.0/opencpu/MD5 | 188 ++++--------- opencpu-2.0/opencpu/NAMESPACE | 18 - opencpu-2.0/opencpu/NEWS | 3 opencpu-2.0/opencpu/R/apps.R |only opencpu-2.0/opencpu/R/config.R | 40 ++ opencpu-2.0/opencpu/R/eval_psock.R | 74 ++--- opencpu-2.0/opencpu/R/evaluate.R |only opencpu-2.0/opencpu/R/execute_file.R | 72 ++--- opencpu-2.0/opencpu/R/execute_function.R | 26 - opencpu-2.0/opencpu/R/extract.R | 3 opencpu-2.0/opencpu/R/github.R |only opencpu-2.0/opencpu/R/httpget.R | 26 - opencpu-2.0/opencpu/R/httpget_apps.R | 68 +++-- opencpu-2.0/opencpu/R/httpget_info.R | 2 opencpu-2.0/opencpu/R/httpget_library.R | 3 opencpu-2.0/opencpu/R/httpget_object.R | 31 +- opencpu-2.0/opencpu/R/httpget_package.R | 26 - opencpu-2.0/opencpu/R/httpget_package_html.R | 2 opencpu-2.0/opencpu/R/httpget_package_man.R | 4 opencpu-2.0/opencpu/R/httpget_package_r.R | 4 opencpu-2.0/opencpu/R/httpget_session.R | 20 - opencpu-2.0/opencpu/R/httpget_session_files.R | 2 opencpu-2.0/opencpu/R/httpget_session_graphics.R | 8 opencpu-2.0/opencpu/R/httpget_session_info.R | 2 opencpu-2.0/opencpu/R/httpget_session_source.R | 2 opencpu-2.0/opencpu/R/httpget_session_warnings.R | 2 opencpu-2.0/opencpu/R/httpget_session_zip.R | 16 - opencpu-2.0/opencpu/R/httpget_static.R | 2 opencpu-2.0/opencpu/R/httpget_tmp.R | 18 - opencpu-2.0/opencpu/R/httpget_user.R | 1 opencpu-2.0/opencpu/R/init.R |only opencpu-2.0/opencpu/R/inlib.R | 24 - opencpu-2.0/opencpu/R/loadsessioninfo.R | 2 opencpu-2.0/opencpu/R/locks.R |only opencpu-2.0/opencpu/R/log.R |only opencpu-2.0/opencpu/R/mail_CI.R | 31 +- opencpu-2.0/opencpu/R/main.R | 18 - opencpu-2.0/opencpu/R/multipart.R | 152 +---------- opencpu-2.0/opencpu/R/namespaces.R |only opencpu-2.0/opencpu/R/onAttach.R | 59 ---- opencpu-2.0/opencpu/R/parse_arg.R | 35 +- opencpu-2.0/opencpu/R/parse_arg_prim.R | 2 opencpu-2.0/opencpu/R/parse_dots.R | 10 opencpu-2.0/opencpu/R/parse_post.R | 6 opencpu-2.0/opencpu/R/rapache.R | 93 +++++- opencpu-2.0/opencpu/R/req.R | 50 ++- opencpu-2.0/opencpu/R/request.R | 48 +-- opencpu-2.0/opencpu/R/res.R | 86 +++--- opencpu-2.0/opencpu/R/rhttpd.R | 143 ++++------ opencpu-2.0/opencpu/R/rookhandler.R | 69 ++--- opencpu-2.0/opencpu/R/rstudio.R |only opencpu-2.0/opencpu/R/save.R |only opencpu-2.0/opencpu/R/script.R |only opencpu-2.0/opencpu/R/secret.R |only opencpu-2.0/opencpu/R/serve.R | 109 +++++--- opencpu-2.0/opencpu/R/session.R | 284 +++++++-------------- opencpu-2.0/opencpu/R/settings.R |only opencpu-2.0/opencpu/R/start.R |only opencpu-2.0/opencpu/R/userlib.R |only opencpu-2.0/opencpu/R/utils.R | 241 ++++++++++++++--- opencpu-2.0/opencpu/build/vignette.rds |binary opencpu-2.0/opencpu/inst/config/defaults.conf | 21 - opencpu-2.0/opencpu/inst/doc/opencpu-paper.pdf |binary opencpu-2.0/opencpu/inst/test/index.html | 8 opencpu-2.0/opencpu/inst/test/spinner.gif |binary opencpu-2.0/opencpu/man/apps.Rd |only opencpu-2.0/opencpu/man/server.Rd |only 138 files changed, 1064 insertions(+), 1133 deletions(-)
Title: JAR Dependencies for the XLConnect Package
Description: Provides external JAR dependencies for the XLConnect package.
Author: Mirai Solutions GmbH [aut],
Martin Studer [cre],
The Apache Software Foundation [ctb, cph] (Apache POI, Apache XMLBeans,
Apache Commons Codec, Apache Commons Collections),
Stephen Colebourne [ctb, cph] (Joda-Time Java library)
Maintainer: Martin Studer <martin.studer@mirai-solutions.com>
Diff between XLConnectJars versions 0.2-12 dated 2016-06-24 and 0.2-13 dated 2017-05-14
DESCRIPTION | 16 +++--- MD5 | 15 +++-- NEWS | 83 +++++++++++++++++---------------- R/onLoad.R | 2 inst/COPYRIGHTS | 78 ++++++++++++++++++++++--------- inst/java/commons-codec-1.10.jar |only inst/java/commons-collections4-4.1.jar |only inst/java/joda-time-2.3.jar |only java/README | 12 ++++ man/XLConnectJars-package.Rd | 4 - 10 files changed, 134 insertions(+), 76 deletions(-)
Title: Excel Connector for R
Description: Provides comprehensive functionality to read, write and format Excel data.
Author: Mirai Solutions GmbH [aut],
Martin Studer [cre],
The Apache Software Foundation [ctb, cph] (Apache POI),
Graph Builder [ctb, cph] (Curvesapi Java library)
Maintainer: Martin Studer <martin.studer@mirai-solutions.com>
Diff between XLConnect versions 0.2-12 dated 2016-06-24 and 0.2-13 dated 2017-05-14
XLConnect-0.2-12/XLConnect/inst/java/XLConnect-0.2-12.jar |only XLConnect-0.2-12/XLConnect/inst/java/commons-codec-1.10.jar |only XLConnect-0.2-12/XLConnect/inst/java/curvesapi-1.03.jar |only XLConnect-0.2-12/XLConnect/inst/java/joda-time-2.3.jar |only XLConnect-0.2-12/XLConnect/inst/java/poi-3.15-beta1.jar |only XLConnect-0.2-12/XLConnect/inst/java/poi-ooxml-3.15-beta1.jar |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookActiveSheetIndexAndName.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookActiveSheetIndexAndName.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookAppend.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookAppend.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookClearCells.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookClearCells.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookCloneSheet.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookCloneSheet.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookGetLastRow.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookGetLastRow.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookHiddenSheets.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookHiddenSheets.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookReadTable.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookReferenceFormula.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookReferenceFormula.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookRemoveName.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookRemoveName.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookRemoveSheet.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookRemoveSheet.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookSetActiveSheet.xls |only XLConnect-0.2-12/XLConnect/inst/unitTests/resources/testWorkbookSetActiveSheet.xlsx |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.appendNamedRegion.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.appendWorksheet.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.clearNamedRegion.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.clearRange.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.clearRangeFromReference.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.clearSheet.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.cloneSheet.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.getActiveSheetIndex.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.getActiveSheetName.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.getLastColumn.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.getLastRow.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.getReferenceCoordinates.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.getReferenceCoordinatesForTable.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.getReferenceFormula.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.getTables.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.isSheetHidden.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.isSheetVeryHidden.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.isSheetVisible.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.readTable.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.removeName.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.removeSheet.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.setActiveSheet.R |only XLConnect-0.2-12/XLConnect/inst/unitTests/runit.workbook.unhideSheet.R |only XLConnect-0.2-12/XLConnect/vignettes/img/RunConfigurations.png |only XLConnect-0.2-12/XLConnect/vignettes/img/TwitterLogo.png |only XLConnect-0.2-13/XLConnect/DESCRIPTION | 18 XLConnect-0.2-13/XLConnect/MD5 | 381 ++++------ XLConnect-0.2-13/XLConnect/NAMESPACE | 1 XLConnect-0.2-13/XLConnect/NEWS | 6 XLConnect-0.2-13/XLConnect/R/XLConnectSettings.R | 6 XLConnect-0.2-13/XLConnect/R/aref.R | 2 XLConnect-0.2-13/XLConnect/R/aref2idx.R | 2 XLConnect-0.2-13/XLConnect/R/cellstyle.R | 2 XLConnect-0.2-13/XLConnect/R/cellstyle.operators.R | 2 XLConnect-0.2-13/XLConnect/R/cellstyle.setBorder.R | 2 XLConnect-0.2-13/XLConnect/R/cellstyle.setDataFormat.R | 2 XLConnect-0.2-13/XLConnect/R/cellstyle.setFillBackgroundColor.R | 2 XLConnect-0.2-13/XLConnect/R/cellstyle.setFillForegroundColor.R | 2 XLConnect-0.2-13/XLConnect/R/cellstyle.setFillPattern.R | 2 XLConnect-0.2-13/XLConnect/R/cellstyle.setWrapText.R | 2 XLConnect-0.2-13/XLConnect/R/classToXlcType.R | 2 XLConnect-0.2-13/XLConnect/R/col2idx.R | 2 XLConnect-0.2-13/XLConnect/R/constants.R | 9 XLConnect-0.2-13/XLConnect/R/cref2idx.R | 2 XLConnect-0.2-13/XLConnect/R/dataframeFromJava.R | 2 XLConnect-0.2-13/XLConnect/R/dataframeToJava.R | 2 XLConnect-0.2-13/XLConnect/R/extractRownames.R | 2 XLConnect-0.2-13/XLConnect/R/extractSheetName.R | 2 XLConnect-0.2-13/XLConnect/R/getColSubset.R | 2 XLConnect-0.2-13/XLConnect/R/idx2aref.R | 2 XLConnect-0.2-13/XLConnect/R/idx2col.R | 2 XLConnect-0.2-13/XLConnect/R/idx2cref.R | 2 XLConnect-0.2-13/XLConnect/R/includeRownames.R | 2 XLConnect-0.2-13/XLConnect/R/jTryCatch.R | 2 XLConnect-0.2-13/XLConnect/R/jseq.R |only XLConnect-0.2-13/XLConnect/R/jsle.R |only XLConnect-0.2-13/XLConnect/R/loadWorkbook.R | 2 XLConnect-0.2-13/XLConnect/R/mirai.R | 2 XLConnect-0.2-13/XLConnect/R/normalizeDataframe.R | 2 XLConnect-0.2-13/XLConnect/R/onAttach.R | 2 XLConnect-0.2-13/XLConnect/R/onLoad.R | 2 XLConnect-0.2-13/XLConnect/R/readNamedRegionFromFile.R | 2 XLConnect-0.2-13/XLConnect/R/readWorksheetFromFile.R | 2 XLConnect-0.2-13/XLConnect/R/rg2idx.R | 2 XLConnect-0.2-13/XLConnect/R/seqle.R |only XLConnect-0.2-13/XLConnect/R/with.workbook.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.addImage.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.appendNamedRegion.R | 84 +- XLConnect-0.2-13/XLConnect/R/workbook.appendWorksheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.clearNamedRegion.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.clearRange.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.clearRangeFromReference.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.clearSheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.cloneSheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.createCellStyle.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.createFreezePane.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.createName.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.createSheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.createSplitPane.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.existsName.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.existsSheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getActiveSheetIndex.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getActiveSheetName.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getBoundingBox.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getCellFormula.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getCellStyle.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getCellStyleForType.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getDefinedNames.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getForceFormulaRecalculation.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getLastColumn.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getLastRow.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getReferenceCoordinates.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getReferenceCoordinatesForName.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getReferenceCoordinatesForTable.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getReferenceFormula.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getSheetPos.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getSheets.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.getTables.R | 6 XLConnect-0.2-13/XLConnect/R/workbook.hideSheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.isSheetHidden.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.isSheetVeryHidden.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.isSheetVisible.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.mergeCells.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.onErrorCell.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.operators.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.print.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.readNamedRegion.R | 4 XLConnect-0.2-13/XLConnect/R/workbook.readTable.R | 4 XLConnect-0.2-13/XLConnect/R/workbook.readWorksheet.R | 4 XLConnect-0.2-13/XLConnect/R/workbook.removeName.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.removePane.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.removeSheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.renameSheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.saveWorkbook.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setActiveSheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setAutoFilter.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setCellFormula.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setCellStyle.R | 112 +- XLConnect-0.2-13/XLConnect/R/workbook.setCellStyleForType.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setColumnWidth.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setDataFormatForType.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setForceFormulaRecalculation.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setHyperlink.R |only XLConnect-0.2-13/XLConnect/R/workbook.setMissingValue.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setRowHeight.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setSheetColor.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setSheetPos.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setStyleAction.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.setStyleNamePrefix.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.show.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.summary.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.unhideSheet.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.unmergeCells.R | 2 XLConnect-0.2-13/XLConnect/R/workbook.writeNamedRegion.R | 82 +- XLConnect-0.2-13/XLConnect/R/workbook.writeWorksheet.R | 2 XLConnect-0.2-13/XLConnect/R/wrapList.R | 78 +- XLConnect-0.2-13/XLConnect/R/writeNamedRegionToFile.R | 2 XLConnect-0.2-13/XLConnect/R/writeWorksheetToFile.R | 2 XLConnect-0.2-13/XLConnect/R/xlcCall.R | 18 XLConnect-0.2-13/XLConnect/R/xlcDump.R | 2 XLConnect-0.2-13/XLConnect/R/xlcEdit.R | 2 XLConnect-0.2-13/XLConnect/R/xlcFreeMemory.R | 2 XLConnect-0.2-13/XLConnect/R/xlcMemoryReport.R | 2 XLConnect-0.2-13/XLConnect/R/xlcRestore.R | 2 XLConnect-0.2-13/XLConnect/README.md | 6 XLConnect-0.2-13/XLConnect/build/vignette.rds |binary XLConnect-0.2-13/XLConnect/inst/COPYRIGHTS | 66 - XLConnect-0.2-13/XLConnect/inst/doc/XLConnect.Rnw | 93 -- XLConnect-0.2-13/XLConnect/inst/doc/XLConnect.pdf |binary XLConnect-0.2-13/XLConnect/inst/doc/XLConnectImpatient.Rnw | 14 XLConnect-0.2-13/XLConnect/inst/doc/XLConnectImpatient.pdf |binary XLConnect-0.2-13/XLConnect/inst/java/XLConnect-0.2-13.jar |only XLConnect-0.2-13/XLConnect/inst/java/curvesapi-1.04.jar |only XLConnect-0.2-13/XLConnect/inst/java/poi-3.16.jar |only XLConnect-0.2-13/XLConnect/inst/java/poi-ooxml-3.16.jar |only XLConnect-0.2-13/XLConnect/inst/java/poi-ooxml-schemas-3.16.jar |only XLConnect-0.2-13/XLConnect/inst/unitTests/resources/testBug61.xlsx |only XLConnect-0.2-13/XLConnect/inst/unitTests/runit.arefidx.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.cellStyle.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.colidx.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.crefidx.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.dataframeConversion.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.dumpAndRestore.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.extractSheetName.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.loadWorkbook.R | 131 +-- XLConnect-0.2-13/XLConnect/inst/unitTests/runit.with.workbook.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.createName.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.createSheet.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.existsName.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.existsSheet.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.extraction.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.getBoundingBox.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.getDefinedNames.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.getSheetPos.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.getSheets.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.hideSheet.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.onErrorCell.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.readNamedRegion.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.readWorksheet.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.renameSheet.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.saveWorkbook.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.setMissingValue.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.setSheetPos.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.writeNamedRegion.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.workbook.writeWorksheet.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.writeAndReadNamedRegion.R | 7 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.writeAndReadWorksheet.R | 2 XLConnect-0.2-13/XLConnect/inst/unitTests/runit.writeNamedRegionToFile.R | 317 ++++---- XLConnect-0.2-13/XLConnect/inst/unitTests/runit.writeWorksheetToFile.R | 283 +++---- XLConnect-0.2-13/XLConnect/java/README | 14 XLConnect-0.2-13/XLConnect/man/XLConnect-package.Rd | 4 XLConnect-0.2-13/XLConnect/man/setHyperlink-methods.Rd |only XLConnect-0.2-13/XLConnect/man/xlcCall.Rd | 99 +- XLConnect-0.2-13/XLConnect/vignettes/XLConnect.Rnw | 93 -- XLConnect-0.2-13/XLConnect/vignettes/XLConnectImpatient.Rnw | 14 223 files changed, 1008 insertions(+), 1204 deletions(-)
Title: Generalized Eigenvalues and QZ Decomposition
Description: Generalized eigenvalues and QZ decomposition
(generalized Schur form) for an N-by-N non-symmetric
matrix A or paired matrices (A,B) with eigenvalues reordering
mechanism. The package is mainly based complex*16 and double
precision of LAPACK library (version 3.4.2.)
Author: Wei-Chen Chen [aut, cre],
LAPACK authors [aut, cph]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between QZ versions 0.1-5 dated 2016-12-21 and 0.1-6 dated 2017-05-14
QZ-0.1-5/QZ/inst/doc/QZ-guide.R |only QZ-0.1-6/QZ/DESCRIPTION | 19 +++++---- QZ-0.1-6/QZ/MD5 | 78 ++++++++++++++++++++++----------------- QZ-0.1-6/QZ/NAMESPACE | 1 QZ-0.1-6/QZ/build |only QZ-0.1-6/QZ/man/21_qz_geigen.Rd | 4 +- QZ-0.1-6/QZ/man/23_qz.Rd | 4 +- QZ-0.1-6/QZ/man/24_ordqz.Rd | 4 +- QZ-0.1-6/QZ/man/30_fda_geigen.Rd | 5 +- QZ-0.1-6/QZ/man/aa_qz_zgges.Rd | 4 +- QZ-0.1-6/QZ/man/aa_qz_zggev.Rd | 4 +- QZ-0.1-6/QZ/man/ac_qz_ztgsen.Rd | 4 +- QZ-0.1-6/QZ/man/bb_qz_dgges.Rd | 4 +- QZ-0.1-6/QZ/man/bb_qz_dggev.Rd | 4 +- QZ-0.1-6/QZ/man/bc_qz_dtgsen.Rd | 4 +- QZ-0.1-6/QZ/man/cc_qz_zgees.Rd | 4 +- QZ-0.1-6/QZ/man/cc_qz_zgeev.Rd | 4 +- QZ-0.1-6/QZ/man/cc_qz_ztrsen.Rd | 4 +- QZ-0.1-6/QZ/man/dd_qz_dgees.Rd | 4 +- QZ-0.1-6/QZ/man/dd_qz_dgeev.Rd | 4 +- QZ-0.1-6/QZ/man/dd_qz_dtrsen.Rd | 4 +- QZ-0.1-6/QZ/man/yy_transpose.Rd | 6 +-- QZ-0.1-6/QZ/src/Makevars.in | 17 +++++++- QZ-0.1-6/QZ/src/Makevars.win | 17 +++++++- QZ-0.1-6/QZ/src/R_dgees.c | 18 ++++----- QZ-0.1-6/QZ/src/R_dgeev.c | 35 +++++------------ QZ-0.1-6/QZ/src/R_dgges.c | 35 +++++------------ QZ-0.1-6/QZ/src/R_dggev.c | 40 ++++++-------------- QZ-0.1-6/QZ/src/R_dtrsen.c | 77 +++++++++++--------------------------- QZ-0.1-6/QZ/src/R_qz_global.h | 22 +++++------ QZ-0.1-6/QZ/src/R_zgees.c | 18 ++++----- QZ-0.1-6/QZ/src/R_zgeev.c | 35 +++++------------ QZ-0.1-6/QZ/src/R_zgges.c | 47 +++++++---------------- QZ-0.1-6/QZ/src/R_zggev.c | 45 ++++++---------------- QZ-0.1-6/QZ/src/R_ztrsen.c | 77 +++++++++++--------------------------- QZ-0.1-6/QZ/src/wdgees.f |only QZ-0.1-6/QZ/src/wdgeev.f |only QZ-0.1-6/QZ/src/wdgges.f |only QZ-0.1-6/QZ/src/wdggev.f |only QZ-0.1-6/QZ/src/wdtrsen.f |only QZ-0.1-6/QZ/src/wzgees.f |only QZ-0.1-6/QZ/src/wzgeev.f |only QZ-0.1-6/QZ/src/wzgges.f |only QZ-0.1-6/QZ/src/wzggev.f |only QZ-0.1-6/QZ/src/wztrsen.f |only QZ-0.1-6/QZ/src/zzz.c |only QZ-0.1-6/QZ/src/zzz.h |only 47 files changed, 265 insertions(+), 387 deletions(-)
Title: Visualization of Spatial and Spatio-Temporal Objects in Google
Earth
Description: Writes sp-class, spacetime-class, raster-class and similar spatial and spatio-temporal objects to KML following some basic cartographic rules.
Author: Tomislav Hengl [cre, aut],
Pierre Roudier [ctb],
Dylan Beaudette [ctb],
Edzer Pebesma [ctb],
Michael Blaschek [ctb]
Maintainer: Tomislav Hengl <tom.hengl@isric.org>
Diff between plotKML versions 0.5-6 dated 2016-05-03 and 0.5-8 dated 2017-05-14
DESCRIPTION | 9 MD5 | 54 - R/AAAA.R | 688 ++++++++++++------------ R/kml_open.R | 6 R/plotKML.SpatialMaxEntOutput.R | 189 +++--- R/readGPX.R | 10 R/spMetadata.R | 21 build/vignette.rds |binary data/datalist | 38 - inst/INSPIRE_ISO19139.xml | 34 - inst/doc/jss1079.R | 296 +++++----- inst/doc/jss1079.pdf |binary man/SAGA_pal.Rd | 8 man/SpatialMaxEntOutput.Rd | 16 man/geopath.rd | 2 man/getCRS.Rd | 2 man/layer.STIDF.Rd | 144 ++--- man/layer.STTDF.Rd | 4 man/layer.SoilProfileCollection.Rd | 188 +++--- man/layer.SpatialPhotoOverlay.Rd | 2 man/makeCOLLADA.Rd | 2 man/metadata2SLD.Rd | 2 man/metadata2SLD.SpatialPixels.Rd | 2 man/plotKML-package.Rd | 2 man/plotKML.Rd | 1048 ++++++++++++++++++------------------- man/reproject.Rd | 2 man/spMetadata.Rd | 2 man/vect2rast.Rd | 2 28 files changed, 1388 insertions(+), 1385 deletions(-)
Title: Simulating and Analyzing Time to Event Data in the Presence of
Population Mortality
Description: Implements two methods: a nonparametric risk adjustment and a
data imputation method that use general population mortality tables to allow a
correct analysis of time to disease recurrence. Also includes a powerful set of
object oriented survival data simulation functions.
Author: Tomaz Stupnik [aut, cre],
Maja Pohar Perme [ctb]
Maintainer: Tomaz Stupnik <tomaz.stupnik@guest.arnes.si>
Diff between missDeaths versions 2.2 dated 2017-02-17 and 2.5 dated 2017-05-14
missDeaths-2.2/missDeaths/man/md.dateuniform.Rd |only missDeaths-2.2/missDeaths/man/md.value.Rd |only missDeaths-2.5/missDeaths/DESCRIPTION | 10 missDeaths-2.5/missDeaths/MD5 | 76 +- missDeaths-2.5/missDeaths/NAMESPACE | 5 missDeaths-2.5/missDeaths/R/RcppExports.R | 342 ---------- missDeaths-2.5/missDeaths/R/exports.R |only missDeaths-2.5/missDeaths/R/init.R | 6 missDeaths-2.5/missDeaths/R/library.R | 119 +-- missDeaths-2.5/missDeaths/R/mysurvnp.r | 196 ++--- missDeaths-2.5/missDeaths/R/package.R | 9 missDeaths-2.5/missDeaths/man/md.D.Rd | 3 missDeaths-2.5/missDeaths/man/md.binom.Rd | 1 missDeaths-2.5/missDeaths/man/md.censor.Rd | 5 missDeaths-2.5/missDeaths/man/md.constant.Rd |only missDeaths-2.5/missDeaths/man/md.data.Rd | 3 missDeaths-2.5/missDeaths/man/md.death.Rd | 5 missDeaths-2.5/missDeaths/man/md.eval.Rd | 5 missDeaths-2.5/missDeaths/man/md.exp.Rd | 1 missDeaths-2.5/missDeaths/man/md.expprep.Rd |only missDeaths-2.5/missDeaths/man/md.impute.Rd | 3 missDeaths-2.5/missDeaths/man/md.init.Rd | 3 missDeaths-2.5/missDeaths/man/md.mvnorm.Rd | 1 missDeaths-2.5/missDeaths/man/md.norm.Rd | 1 missDeaths-2.5/missDeaths/man/md.sample.Rd | 1 missDeaths-2.5/missDeaths/man/md.sex.Rd | 1 missDeaths-2.5/missDeaths/man/md.simdataobject.Rd | 2 missDeaths-2.5/missDeaths/man/md.simparams.Rd | 7 missDeaths-2.5/missDeaths/man/md.simulate.Rd | 5 missDeaths-2.5/missDeaths/man/md.survcox.Rd | 3 missDeaths-2.5/missDeaths/man/md.survnp.Rd | 3 missDeaths-2.5/missDeaths/man/md.survprob.Rd |only missDeaths-2.5/missDeaths/man/md.survtime.Rd | 3 missDeaths-2.5/missDeaths/man/md.uniform.Rd | 5 missDeaths-2.5/missDeaths/man/missDeaths.Rd | 11 missDeaths-2.5/missDeaths/man/observed.Rd | 1 missDeaths-2.5/missDeaths/man/plus-md.simdata-md.simdataobject-method.Rd | 1 missDeaths-2.5/missDeaths/src/RcppExports.cpp | 157 +--- missDeaths-2.5/missDeaths/src/init.c | 16 missDeaths-2.5/missDeaths/src/simcensor.cpp | 22 missDeaths-2.5/missDeaths/src/survexpcache.cpp | 22 missDeaths-2.5/missDeaths/src/survexpcache.h | 1 42 files changed, 362 insertions(+), 693 deletions(-)
Title: Root Mean Square Curvature Calculation
Description: Calculates the RMS intrinsic and parameter-effects curvatures of a nonlinear regression model.
Author: Peijian Shi, Peter Ridland, David A. Ratkowsky
Maintainer: Peijian Shi <peijianshi@gmail.com>
Diff between IPEC versions 0.0.8 dated 2017-05-10 and 0.0.9 dated 2017-05-14
IPEC-0.0.8/IPEC/tests |only IPEC-0.0.9/IPEC/DESCRIPTION | 9 ++++----- IPEC-0.0.9/IPEC/MD5 | 10 +++++----- IPEC-0.0.9/IPEC/R/bootIPEC.R | 23 +++++++++++++---------- IPEC-0.0.9/IPEC/build/partial.rdb |binary IPEC-0.0.9/IPEC/inst |only IPEC-0.0.9/IPEC/man/bootIPEC.Rd | 8 +++++--- 7 files changed, 27 insertions(+), 23 deletions(-)
Title: Global Soil Information Facilities
Description: Global Soil Information Facilities - tools (standards and functions) and sample datasets for global soil mapping.
Author: Tomislav Hengl [cre, aut],
Bas Kempen [ctb],
Gerard Heuvelink [ctb],
Brendan Malone [ctb]
Maintainer: Tomislav Hengl <tom.hengl@isric.org>
Diff between GSIF versions 0.5-3 dated 2016-07-22 and 0.5-4 dated 2017-05-14
GSIF-0.5-3/GSIF/R/MaxEnt.R |only GSIF-0.5-3/GSIF/man/MaxEnt.Rd |only GSIF-0.5-4/GSIF/DESCRIPTION | 18 GSIF-0.5-4/GSIF/MD5 | 66 - GSIF-0.5-4/GSIF/NAMESPACE | 55 - GSIF-0.5-4/GSIF/R/AAAA.R | 814 +++++++++++------------ GSIF-0.5-4/GSIF/R/RESTSoilGrids.R | 134 +-- GSIF-0.5-4/GSIF/R/buffer.dist.R | 2 GSIF-0.5-4/GSIF/R/mpspline.R | 590 ++++++++-------- GSIF-0.5-4/GSIF/R/spc.R | 180 ++--- GSIF-0.5-4/GSIF/data/USDA.TT.im.rda |binary GSIF-0.5-4/GSIF/data/afsp.rda |binary GSIF-0.5-4/GSIF/data/cookfarm.rda |binary GSIF-0.5-4/GSIF/data/datalist | 26 GSIF-0.5-4/GSIF/data/edgeroi.rda |binary GSIF-0.5-4/GSIF/data/geochm.rda |binary GSIF-0.5-4/GSIF/data/isis.rda |binary GSIF-0.5-4/GSIF/data/landmask.rda |binary GSIF-0.5-4/GSIF/data/landmask20km.rda |binary GSIF-0.5-4/GSIF/data/munsell.rda |binary GSIF-0.5-4/GSIF/data/soil.classes.rda |binary GSIF-0.5-4/GSIF/data/soil.dom.rda |binary GSIF-0.5-4/GSIF/data/soil.legends.rda |binary GSIF-0.5-4/GSIF/data/soil.vars.rda |binary GSIF-0.5-4/GSIF/man/FAO.SoilProfileCollection.Rd | 2 GSIF-0.5-4/GSIF/man/REST.SoilGrids.Rd | 2 GSIF-0.5-4/GSIF/man/SoilGrids.Rd | 2 GSIF-0.5-4/GSIF/man/afsp.Rd | 138 +-- GSIF-0.5-4/GSIF/man/buffer.dist.Rd | 218 +++--- GSIF-0.5-4/GSIF/man/extract.Rd | 70 - GSIF-0.5-4/GSIF/man/gstatModel.Rd | 1 GSIF-0.5-4/GSIF/man/isis.Rd | 116 +-- GSIF-0.5-4/GSIF/man/landmask.Rd | 122 +-- GSIF-0.5-4/GSIF/man/make.3Dgrid.Rd | 6 GSIF-0.5-4/GSIF/man/spmultinom.Rd | 112 +-- 35 files changed, 1343 insertions(+), 1331 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Provides new statistics to locate and tag peaks and valleys in 2D
plots, a statistics to add a label with the equation of a polynomial fitted
with lm(), or R^2 or adjusted R^2 or information criteria for any model
fitted with function lm(). Additional statistics give access to functions
in package 'broom'. Provides a function for flexibly converting time
series to data frames suitable for plotting with ggplot(). In addition
provides statistics and ggplot geometries useful for diagnosing what data
are passed to compute_group() and compute_panel() functions and to
geometries.
Author: Pedro J. Aphalo [aut, cre],
Kamil Slowikowski [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.2.14 dated 2017-02-01 and 0.2.15 dated 2017-05-14
ggpmisc-0.2.14/ggpmisc/inst/doc/debug.R |only ggpmisc-0.2.14/ggpmisc/inst/doc/debug.Rmd |only ggpmisc-0.2.14/ggpmisc/inst/doc/debug.html |only ggpmisc-0.2.14/ggpmisc/inst/doc/examples-dens2d.R |only ggpmisc-0.2.14/ggpmisc/inst/doc/examples-dens2d.Rmd |only ggpmisc-0.2.14/ggpmisc/inst/doc/examples-dens2d.html |only ggpmisc-0.2.14/ggpmisc/inst/doc/user-guide.R |only ggpmisc-0.2.14/ggpmisc/inst/doc/user-guide.Rmd |only ggpmisc-0.2.14/ggpmisc/inst/doc/user-guide.html |only ggpmisc-0.2.14/ggpmisc/vignettes/debug.Rmd |only ggpmisc-0.2.14/ggpmisc/vignettes/examples-dens2d.Rmd |only ggpmisc-0.2.14/ggpmisc/vignettes/user-guide.Rmd |only ggpmisc-0.2.15/ggpmisc/DESCRIPTION | 10 ggpmisc-0.2.15/ggpmisc/MD5 | 47 ++-- ggpmisc-0.2.15/ggpmisc/NAMESPACE | 2 ggpmisc-0.2.15/ggpmisc/NEWS | 8 ggpmisc-0.2.15/ggpmisc/R/geom-debug.R | 2 ggpmisc-0.2.15/ggpmisc/R/stat-fit-broom.R | 194 +++++++++++++++++ ggpmisc-0.2.15/ggpmisc/R/stat-peaks.R | 12 - ggpmisc-0.2.15/ggpmisc/README.md | 7 ggpmisc-0.2.15/ggpmisc/build/vignette.rds |binary ggpmisc-0.2.15/ggpmisc/inst/doc/a-user-guide.R |only ggpmisc-0.2.15/ggpmisc/inst/doc/a-user-guide.Rmd |only ggpmisc-0.2.15/ggpmisc/inst/doc/a-user-guide.html |only ggpmisc-0.2.15/ggpmisc/inst/doc/b-examples-dens2d.R |only ggpmisc-0.2.15/ggpmisc/inst/doc/b-examples-dens2d.Rmd |only ggpmisc-0.2.15/ggpmisc/inst/doc/b-examples-dens2d.html |only ggpmisc-0.2.15/ggpmisc/inst/doc/c-debug.R |only ggpmisc-0.2.15/ggpmisc/inst/doc/c-debug.Rmd |only ggpmisc-0.2.15/ggpmisc/inst/doc/c-debug.html |only ggpmisc-0.2.15/ggpmisc/man/geom_debug.Rd | 2 ggpmisc-0.2.15/ggpmisc/man/ggpmisc-ggproto.Rd | 2 ggpmisc-0.2.15/ggpmisc/man/stat_fit_tidy.Rd |only ggpmisc-0.2.15/ggpmisc/man/stat_peaks.Rd | 12 - ggpmisc-0.2.15/ggpmisc/vignettes/a-user-guide.Rmd |only ggpmisc-0.2.15/ggpmisc/vignettes/b-examples-dens2d.Rmd |only ggpmisc-0.2.15/ggpmisc/vignettes/c-debug.Rmd |only 37 files changed, 255 insertions(+), 43 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups
preprocessed through matching, weighting or subclassification, for example,
using propensity scores. Includes integration with 'MatchIt', 'twang', 'Matching', 'optmatch',
'CBPS', and 'ebal' for assessing balance on the output of their preprocessing functions. Users
can also specify data for balance assessment not generated through the above packages. Also
included are methods for assessing balance in clustered or multiply imputed data sets.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah@unc.edu>
Diff between cobalt versions 1.3.1 dated 2016-12-18 and 2.0.0 dated 2017-05-14
cobalt-1.3.1/cobalt/R/get.C.R |only cobalt-1.3.1/cobalt/inst/doc/cobalt.R |only cobalt-1.3.1/cobalt/inst/doc/cobalt.Rmd |only cobalt-1.3.1/cobalt/inst/doc/cobalt.html |only cobalt-1.3.1/cobalt/vignettes/cobalt.Rmd |only cobalt-2.0.0/cobalt/DESCRIPTION | 21 cobalt-2.0.0/cobalt/MD5 | 69 cobalt-2.0.0/cobalt/NAMESPACE | 14 cobalt-2.0.0/cobalt/R/bal.plot.R | 243 + cobalt-2.0.0/cobalt/R/bal.tab.R | 1721 ++++------ cobalt-2.0.0/cobalt/R/do_not_include/Under_construction/under_construction.R | 527 --- cobalt-2.0.0/cobalt/R/do_not_include/tests.R | 87 cobalt-2.0.0/cobalt/R/functions_for_processing.R |only cobalt-2.0.0/cobalt/R/love.plot.R | 941 +++-- cobalt-2.0.0/cobalt/R/print.bal.tab.R | 631 ++- cobalt-2.0.0/cobalt/R/utilities.R | 88 cobalt-2.0.0/cobalt/R/x2base.R | 1258 +++++-- cobalt-2.0.0/cobalt/README.md | 77 cobalt-2.0.0/cobalt/build/vignette.rds |binary cobalt-2.0.0/cobalt/data/lalonde.RData |binary cobalt-2.0.0/cobalt/data/lalonde_mis.RData |only cobalt-2.0.0/cobalt/inst/doc/cobalt_basic_use.R |only cobalt-2.0.0/cobalt/inst/doc/cobalt_basic_use.Rmd |only cobalt-2.0.0/cobalt/inst/doc/cobalt_basic_use.html |only cobalt-2.0.0/cobalt/inst/doc/cobalt_cluster_imp.R |only cobalt-2.0.0/cobalt/inst/doc/cobalt_cluster_imp.Rmd |only cobalt-2.0.0/cobalt/inst/doc/cobalt_cluster_imp.html |only cobalt-2.0.0/cobalt/inst/figures |only cobalt-2.0.0/cobalt/man/bal.plot.Rd | 41 cobalt-2.0.0/cobalt/man/bal.tab.CBPS.Rd | 39 cobalt-2.0.0/cobalt/man/bal.tab.Match.Rd | 34 cobalt-2.0.0/cobalt/man/bal.tab.Rd | 6 cobalt-2.0.0/cobalt/man/bal.tab.df.formula.Rd | 94 cobalt-2.0.0/cobalt/man/bal.tab.ebalance.Rd | 31 cobalt-2.0.0/cobalt/man/bal.tab.matchit.Rd | 31 cobalt-2.0.0/cobalt/man/bal.tab.optmatch.Rd |only cobalt-2.0.0/cobalt/man/bal.tab.ps.Rd | 24 cobalt-2.0.0/cobalt/man/f.build.Rd | 2 cobalt-2.0.0/cobalt/man/lalonde.Rd | 12 cobalt-2.0.0/cobalt/man/love.plot.Rd | 61 cobalt-2.0.0/cobalt/man/print.bal.tab.Rd | 66 cobalt-2.0.0/cobalt/vignettes/cobalt_basic_use.Rmd |only cobalt-2.0.0/cobalt/vignettes/cobalt_cluster_imp.Rmd |only 43 files changed, 3521 insertions(+), 2597 deletions(-)
Title: Simple Animated Plots for R
Description: Simple animated versions of basic R plots, using the 'animation'
package. Includes animated versions of plot, barplot, persp, contour,
filled.contour, hist, curve, points, lines, text, symbols, segments, and
arrows.
Author: David Hugh-Jones <davidhughjones@gmail.com>
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between anim.plots versions 0.1 dated 2014-11-05 and 0.2 dated 2017-05-14
anim.plots-0.1/anim.plots/README.md |only anim.plots-0.1/anim.plots/inst/doc/Intro.Rmd |only anim.plots-0.1/anim.plots/inst/doc/Intro.html |only anim.plots-0.1/anim.plots/inst/doc/anim-plots-presentation.html |only anim.plots-0.1/anim.plots/vignettes/Intro.Rmd |only anim.plots-0.1/anim.plots/vignettes/anim-plots-presentation.Rpres |only anim.plots-0.2/anim.plots/DESCRIPTION | 15 anim.plots-0.2/anim.plots/MD5 | 52 +- anim.plots-0.2/anim.plots/NAMESPACE | 6 anim.plots-0.2/anim.plots/R/anim.plots.R | 252 +--------- anim.plots-0.2/anim.plots/R/postprocessing.R |only anim.plots-0.2/anim.plots/build/vignette.rds |binary anim.plots-0.2/anim.plots/data/PGgame.RData |only anim.plots-0.2/anim.plots/inst/doc/anim.plots-stub.R |only anim.plots-0.2/anim.plots/inst/doc/anim.plots-stub.Rmd |only anim.plots-0.2/anim.plots/inst/doc/anim.plots-stub.html |only anim.plots-0.2/anim.plots/inst/doc/anim.plots.Rmd |only anim.plots-0.2/anim.plots/man/PGgame.Rd |only anim.plots-0.2/anim.plots/man/anim.barplot.Rd | 17 anim.plots-0.2/anim.plots/man/anim.contour.Rd | 16 anim.plots-0.2/anim.plots/man/anim.curve.Rd | 16 anim.plots-0.2/anim.plots/man/anim.hist.Rd | 12 anim.plots-0.2/anim.plots/man/anim.plot.Rd | 95 +-- anim.plots-0.2/anim.plots/man/anim.plots-package.Rd |only anim.plots-0.2/anim.plots/man/anim.save.Rd | 26 - anim.plots-0.2/anim.plots/man/anim.segments.Rd | 26 - anim.plots-0.2/anim.plots/man/anim.smooth.Rd |only anim.plots-0.2/anim.plots/man/cities.Rd | 4 anim.plots-0.2/anim.plots/man/gm_data.Rd | 4 anim.plots-0.2/anim.plots/man/hurricanes.Rd | 4 anim.plots-0.2/anim.plots/man/merge.anim.frames.Rd | 10 anim.plots-0.2/anim.plots/man/replay.Rd | 10 anim.plots-0.2/anim.plots/man/temps.Rd | 4 anim.plots-0.2/anim.plots/man/troops.Rd | 4 anim.plots-0.2/anim.plots/vignettes/anim.plots-stub.Rmd |only 35 files changed, 211 insertions(+), 362 deletions(-)