Title: Toolbox for WELL Random Number Generators
Description: It is a dedicated package to WELL pseudo random generators, which were introduced in Panneton et al. (2006), ``Improved Long-Period Generators Based on Linear Recurrences Modulo 2'', ACM Transactions on Mathematical Software. But this package is not intended to be used directly, you are strongly __encouraged__ to use the 'randtoolbox' package, which depends on this package.
Author: C code by F. Panneton, P. L'Ecuyer and M. Matsumoto and R port by Christophe Dutang and Petr Savicky <savicky@cs.cas.cz>.
Maintainer: Christophe Dutang <christophe.dutang@ensimag.fr>
Diff between rngWELL versions 0.10-4 dated 2015-07-27 and 0.10-5 dated 2017-05-21
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- configure.ac | 4 ++-- inst/NEWS | 10 ++++++++++ src/init.c | 52 +++++++++++++++++++++++++++++++++++----------------- src/version.c | 2 +- src/version.h |only tests |only 8 files changed, 59 insertions(+), 29 deletions(-)
Title: Predicting the Number of Species in a Random Sample
Description: The relation between the number of species and the number of individuals in a random sample is a classic problem back to Fisher (1943) <doi:10.2307/1411>. We generalize this problem to estimate the number of species represented at least r times in a random sample. In particular when r=1, it becomes the classic problem. We use a mixture of Poisson processes to model sampling procedures and apply a nonparametric empirical Bayes approach to obtain an estimator. For more information on preseqR, see Deng C, Daley T and Smith AD (2015) <doi:10.1007/s40484-015-0049-7> and Deng C and Smith AD (2016) <arXiv:1607.02804v2>.
Author: Chao Deng, Timothy Daley and Andrew D. Smith
Maintainer: Chao Deng <chaodeng@usc.edu>
Diff between preseqR versions 3.0.1 dated 2017-04-19 and 3.1.0 dated 2017-05-21
preseqR-3.0.1/preseqR/src |only preseqR-3.1.0/preseqR/DESCRIPTION | 10 preseqR-3.1.0/preseqR/MD5 | 23 preseqR-3.1.0/preseqR/NAMESPACE | 1 preseqR-3.1.0/preseqR/R/kmer.R | 295 ++++-------- preseqR-3.1.0/preseqR/R/mincount.R | 598 ++++++++----------------- preseqR-3.1.0/preseqR/R/rational_function.R |only preseqR-3.1.0/preseqR/R/simulation.R | 28 - preseqR-3.1.0/preseqR/README.md | 5 preseqR-3.1.0/preseqR/inst/CITATION | 20 preseqR-3.1.0/preseqR/man/ds.mincount.Rd | 4 preseqR-3.1.0/preseqR/man/preseqR.simu.hist.Rd | 15 12 files changed, 386 insertions(+), 613 deletions(-)
Title: Latent Environmental & Genetic InTeraction (LEGIT) Model
Description: Constructs genotype x environment interaction (GxE) models where
G is a weighted sum of genetic variants (genetic score) and E is a weighted
sum of environments (environmental score) using the alternating optimization algorithm
by Jolicoeur-Martineau et al. (2017) <arXiv:1703.08111>. This approach has greatly
enhanced predictive power over traditional GxE models which include only a single
genetic variant and a single environmental exposure. Although this approach was
originally made for GxE modelling, it is flexible and does not require the use of
genetic and environmental variables. It can also handle more than 2 latent variables
(rather than just G and E) and 3-way interactions or more. The LEGIT model produces
highly interpretable results and is very parameter-efficient thus it can even be
used with small sample sizes (n < 250).
Author: Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>
Maintainer: Alexia Jolicoeur-Martineau <alexia.jolicoeur-martineau@mail.mcgill.ca>
Diff between LEGIT versions 1.1.0 dated 2017-05-11 and 1.1.1 dated 2017-05-21
DESCRIPTION | 8 - MD5 | 26 ++--- R/LEGIT.R | 197 ++++++++++++++++++++++++++++++++------------ inst/doc/LEGIT.Rmd | 2 inst/doc/LEGIT.html | 80 +++++++---------- man/backward_step.Rd | 2 man/backward_step_IM.Rd | 2 man/bootstrap_var_select.Rd | 29 ++---- man/forward_step.Rd | 2 man/forward_step_IM.Rd | 2 man/stepwise_search.Rd | 10 +- man/stepwise_search_IM.Rd | 12 +- man/summary.IMLEGIT.Rd | 2 vignettes/LEGIT.Rmd | 2 14 files changed, 224 insertions(+), 152 deletions(-)
Title: Methods for Estimating Optimal Dynamic Treatment Regimes
Description: Methods to estimate dynamic treatment regimes using Interactive Q-Learning, Q-Learning, weighted learning, and value-search methods based on Augmented Inverse Probability Weighted Estimators and Inverse Probability Weighted Estimators.
Author: S. T. Holloway, E. B. Laber, K. A. Linn, B. Zhang, M. Davidian, and A. A. Tsiatis
Maintainer: Shannon T. Holloway <sthollow@ncsu.edu>
Diff between DynTxRegime versions 3.0 dated 2017-05-15 and 3.01 dated 2017-05-21
DESCRIPTION | 8 MD5 | 28 R/AA08_TxSubset.R | 1 R/AB00_TypedSimpleFit.R | 432 +++++++------- R/AB02_TypedSimpleFitWithSubsets.R | 202 +++--- R/AB08_SubsetListFit.R | 318 +++++----- R/AB11_newOutcomeRegression.R | 1088 ++++++++++++++++++------------------- R/AD01_Regime.R | 2 R/AD02_Regime_DecisionPointList.R | 1 R/AF01_QLearn.R | 24 R/AF02_newQLearn.R | 560 +++++++++---------- R/AG03_OWL.R | 932 +++++++++++++++---------------- R/AI06_newOptimalSeq.R | 2 R/AL06_newBOWL.R | 774 +++++++++++++------------- man/DynTxRegime-package.Rd | 4 15 files changed, 2194 insertions(+), 2182 deletions(-)
Title: Tools for Distance Metrics
Description: Provides tools for constructing, manipulating and using distance metrics.
Author: Fredrik Savje [aut, cre]
Maintainer: Fredrik Savje <fredrik.savje@berkeley.edu>
Diff between distances versions 0.1.0 dated 2017-03-05 and 0.1.1 dated 2017-05-21
DESCRIPTION | 10 ++-- MD5 | 67 ++++++++++++++++----------------- NEWS.md |only R/distance_matrix.R | 2 R/distances-package.R | 12 +++-- R/distances.R | 4 - R/input_check.R | 2 R/methods.R | 2 R/search.R | 3 - README.md | 19 +++++++-- inst/include/distancesAPI.h | 2 man/distances-package.Rd | 10 ++-- man/distances.Rd | 2 src/distances-init.c | 2 src/error.c | 2 src/error.h | 2 src/get_dists.c | 12 ++--- src/get_dists.h | 2 src/internal.c | 2 src/internal.h | 2 src/libann/Makefile | 40 +++++++++---------- src/libann/include/ANN/ANNperf.h | 2 src/max_dists.c | 2 src/max_dists.h | 2 src/nn_search.c | 2 src/nn_search.h | 2 src/nn_search_ann.cpp | 2 src/utils.c | 2 src/utils.h | 2 tests/testthat/test_distance_matrix.R | 2 tests/testthat/test_distances.R | 2 tests/testthat/test_func_input_check.R | 2 tests/testthat/test_input_check.R | 2 tests/testthat/test_methods.R | 2 tests/testthat/test_search.R | 2 35 files changed, 122 insertions(+), 105 deletions(-)
Title: Raw Accelerometer Data Analysis
Description: A tool to process and analyse data collected with wearable raw acceleration sensors. The package has been developed and tested for binary data from GENEActiv and GENEA devices, .csv-export data from Actigraph devices, and .cwa and .wav-format data from Axivity. These devices are currently widely used in research on human daily physical activity.
Author: Vincent T van Hees [aut, cre],
Zhou Fang [ctb],
Jing Hua Zhao [ctb],
Joe Heywood [ctb],
Evgeny Mirkes [ctb],
Severine Sabia [ctb]
Maintainer: Vincent T van Hees <vincentvanhees@gmail.com>
Diff between GGIR versions 1.5-7 dated 2017-05-09 and 1.5-9 dated 2017-05-21
DESCRIPTION | 8 - MD5 | 49 ++++---- R/g.analyse.R | 5 R/g.calibrate.R | 131 ----------------------- R/g.cwaread.R | 4 R/g.getmeta.R | 23 ++-- R/g.inspectfile.R | 4 R/g.part1.R | 4 R/g.part2.R | 22 +-- R/g.part4.R | 2 R/g.part5.R | 4 R/g.plot5.R | 2 R/g.readaccfile.R | 14 +- R/g.report.part2.R | 2 R/g.report.part4.R | 29 +---- R/g.shell.GGIR.R | 7 - inst/NEWS.Rd | 12 +- inst/doc/GGIR.R | 4 inst/doc/GGIR.Rmd | 118 +++++++++++++++++--- inst/doc/GGIR.html | 233 +++++++++++++++++++++++++++++++++++++---- man/GGIR-package.Rd | 7 - man/g.cwaread.Rd | 2 man/g.getmeta.Rd | 5 man/g.part1.Rd | 14 +- vignettes/GGIR.Rmd | 118 +++++++++++++++++--- vignettes/example_dovisual.jpg |only 26 files changed, 528 insertions(+), 295 deletions(-)
Title: Parse a BibTeX File to a Data.frame
Description: Parse a BibTeX file to a data.frame to make it accessible for further analysis and visualization.
Author: Philipp Ottolinger [aut, cre],
Thomas Leeper [ctb]
Maintainer: Philipp Ottolinger <philipp@ottolinger.de>
Diff between bib2df versions 0.1.1 dated 2016-08-08 and 0.2 dated 2017-05-21
DESCRIPTION | 26 ++++++++----- MD5 | 23 +++++++----- NAMESPACE | 2 + R/bib2df.R | 14 ++++--- R/bib2df_gather.R | 79 ++++++++++++++++++++++++++++++------------ R/bib2df_tidy.R | 16 ++++++-- R/df2bib.R |only inst/extdata/biblio_nosep.bib |only man/bib2df.Rd | 14 ++++--- man/bib2df_gather.Rd | 5 +- man/bib2df_read.Rd | 1 man/bib2df_tidy.Rd | 11 +++-- man/df2bib.Rd |only tests |only 14 files changed, 126 insertions(+), 65 deletions(-)
Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R.
The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange
with R. This provides a reliable and scalable foundation for statistical services or
building R web applications. The OpenCPU server runs either as a single-user development
server within the interactive R session, or as a multi-user Linux stack based on Apache2.
The entire system is fully open source and permissively licensed. The OpenCPU website
has detailed documentation and example apps.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencpu versions 2.0 dated 2017-05-14 and 2.0.1 dated 2017-05-21
opencpu-2.0.1/opencpu/DESCRIPTION | 12 - opencpu-2.0.1/opencpu/MD5 | 50 +++---- opencpu-2.0.1/opencpu/NAMESPACE | 1 opencpu-2.0.1/opencpu/NEWS | 28 +++- opencpu-2.0.1/opencpu/R/apps.R | 44 +++++- opencpu-2.0.1/opencpu/R/devtools.R |only opencpu-2.0.1/opencpu/R/email.R |only opencpu-2.0.1/opencpu/R/extract.R | 157 +++++++++++------------ opencpu-2.0.1/opencpu/R/github.R | 41 ++---- opencpu-2.0.1/opencpu/R/httpget.R | 2 opencpu-2.0.1/opencpu/R/httpget_object.R | 42 ++---- opencpu-2.0.1/opencpu/R/httpget_webhook.R | 52 ++++++- opencpu-2.0.1/opencpu/R/iptools.R |only opencpu-2.0.1/opencpu/R/log.R | 2 opencpu-2.0.1/opencpu/R/rookhandler.R | 7 - opencpu-2.0.1/opencpu/R/script.R | 44 ++++-- opencpu-2.0.1/opencpu/R/serve.R | 3 opencpu-2.0.1/opencpu/R/session.R | 139 +++++++++----------- opencpu-2.0.1/opencpu/R/settings.R | 26 ++- opencpu-2.0.1/opencpu/R/start.R | 27 ++- opencpu-2.0.1/opencpu/R/utils.R | 26 +++ opencpu-2.0.1/opencpu/inst/CITATION | 2 opencpu-2.0.1/opencpu/inst/config/defaults.conf | 1 opencpu-2.0.1/opencpu/inst/doc/opencpu-paper.pdf |binary opencpu-2.0.1/opencpu/inst/test/index.html | 2 opencpu-2.0.1/opencpu/man/apps.Rd | 3 opencpu-2.0.1/opencpu/man/server.Rd | 13 + opencpu-2.0/opencpu/R/mail_CI.R |only 28 files changed, 431 insertions(+), 293 deletions(-)
Title: Unicode Symbols at the R Prompt
Description: A small subset of Unicode symbols, that are useful
when building command line applications. They fall back to
alternatives on terminals that do not support Unicode.
Many symbols were taken from the 'figures' 'npm' package
(see <https://github.com/sindresorhus/figures>).
Author: Gábor Csárdi [aut, cre],
Sindre Sorhus [aut]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between clisymbols versions 1.1.0 dated 2017-01-27 and 1.2.0 dated 2017-05-21
clisymbols-1.1.0/clisymbols/inst/README.md |only clisymbols-1.2.0/clisymbols/DESCRIPTION | 6 - clisymbols-1.2.0/clisymbols/MD5 | 8 +- clisymbols-1.2.0/clisymbols/R/symbols.R | 70 +++++++++++++++++++++-- clisymbols-1.2.0/clisymbols/inst/NEWS.md | 11 +++ clisymbols-1.2.0/clisymbols/inst/README.markdown |only 6 files changed, 83 insertions(+), 12 deletions(-)
Title: High-Performance Stemmer, Tokenizer, and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for
languages with rich morphology and complex word compounding or character
encoding. The package can check and analyze individual words as well as
search for incorrect words within a text, latex, html or xml document. Use
the 'devtools' package to spell check R documentation with 'hunspell'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between hunspell versions 2.4 dated 2017-04-30 and 2.5 dated 2017-05-21
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS | 3 +++ R/RcppExports.R | 4 ++-- R/hunspell.R | 13 +++++++------ inst/doc/intro.R | 3 ++- inst/doc/intro.Rmd | 5 +++-- inst/doc/intro.html | 36 ++++++++++++++++++------------------ man/hunspell.Rd | 4 +++- src/RcppExports.cpp | 7 ++++--- src/check.cpp | 4 +++- tests/testthat/test_encodings.R | 15 +++++++++++++++ vignettes/intro.Rmd | 5 +++-- 13 files changed, 79 insertions(+), 52 deletions(-)
Title: 'Clp (Coin-or linear programming)' Plugin for the 'R'
Optimization Interface
Description: Enhances the R Optimization Infrastructure (ROI) package by registering
the COIN-OR Clp open-source solver from the COIN-OR suite <https://projects.coin-or.org/>.
It allows for solving linear programming with continuous objective variables
keeping sparse constraints definition.
Author: Benoit Thieurmel [aut, cre]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Diff between ROI.plugin.clp versions 0.2 dated 2017-05-11 and 0.3 dated 2017-05-21
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- R/plugin.R | 20 ++++++++++---------- R/zzz.R | 12 ++++-------- tests/testthat/test_LP.R | 6 +++--- 5 files changed, 27 insertions(+), 30 deletions(-)
More information about ROI.plugin.clp at CRAN
Permanent link
Title: Flexible Optimization
Description: Flexible optimizer with numerous input specifications. It allows a very detailed parameterization and is therefore useful for specific and complex loss functions, like functions with discrete parameter space. Also visualization tools for validation and analysis of the convergence are included.
Author: Kai Husmann and Alexander Lange
Maintainer: Kai Husmann <khusman1@uni-goettingen.de>
Diff between optimization versions 1.0-1 dated 2016-12-04 and 1.0-4 dated 2017-05-21
DESCRIPTION | 13 +++++----- MD5 | 24 ++++++++++-------- NAMESPACE | 2 - NEWS |only NEWS.md |only R/optim_sa.R | 2 - R/plot.optim_nmsa.R | 2 - build/partial.rdb |binary inst |only man/optim_nm.Rd | 2 - man/optim_sa.Rd | 26 ++++++++++---------- man/optimization-package.Rd | 12 +++------ man/plot.optim_nmsa.Rd | 6 ++-- src/optim_sa.cpp | 57 +++++++++++++++++++++++++++++--------------- src/optimization_init.c |only 15 files changed, 84 insertions(+), 62 deletions(-)
Title: Design-Based Global and Small-Area Estimations for Multiphase
Forest Inventories
Description: Extensive global and small-area estimation procedures for multiphase
forest inventories under the design-based Monte-Carlo approach are provided.
The implementation includes estimators for simple and cluster sampling
published by Daniel Mandallaz in 2007 (<DOI:10.1201/9781584889779>),
2013 (<DOI:10.1139/cjfr-2012-0381>, <DOI:10.1139/cjfr-2013-0181>,
<DOI:10.1139/cjfr-2013-0449>, <DOI:10.3929/ethz-a-009990020>)
and 2016 (<DOI:10.3929/ethz-a-010579388>). It provides point estimates,
their external- and design-based variances as well as confidence intervals.
The procedures have also been optimized for the use of remote sensing data
as auxiliary information.
Author: Andreas Hill [aut, cre],
Alexander Massey [aut],
Daniel Mandallaz [ctb]
Maintainer: Andreas Hill <andreas.hill@usys.ethz.ch>
Diff between forestinventory versions 0.1.0 dated 2016-07-06 and 0.2.0 dated 2017-05-21
DESCRIPTION | 16 +- MD5 | 54 +++---- NEWS | 8 + R/confint_methods.R | 60 ++++---- R/errorchecking.R | 189 +++++++++++++++++-------- R/forestinventory.R | 4 R/global_exhaustive3p_cluster.R | 17 -- R/global_nonexhaustive2p.R | 89 ++++++++---- R/global_nonexhaustive3p_cluster.R | 20 -- R/onephase.R | 108 ++++++++++---- R/psmall_fct.R | 104 +++++++------- R/psmall_fct3p.R | 62 ++++---- R/small_area_looper.R | 2 R/small_area_looper_3p.R | 4 R/small_area_nonexhaustive2p_cluster.R | 244 ++++++++++++++++++--------------- R/small_area_nonexhaustive3p_cluster.R | 6 R/threephase.R | 133 ++++++++++++++--- R/twophase.R | 86 ++++++++--- data/zberg.rda |binary inst/CITATION | 18 +- man/confint.Rd | 11 - man/forestinventory.Rd | 4 man/grisons.Rd | 1 man/onephase.Rd | 2 man/summary.Rd | 3 man/threephase.Rd | 6 man/twophase.Rd | 4 man/zberg.Rd | 1 28 files changed, 777 insertions(+), 479 deletions(-)
More information about forestinventory at CRAN
Permanent link
Title: Reading EDF(+) and BDF(+) Files
Description: Reads European Data Format files EDF and EDF+, see <http://www.edfplus.info>,
BioSemi Data Format files BDF, see <http://www.biosemi.com/faq/file_format.htm>,
and BDF+ files, see <http://www.teuniz.net/edfbrowser/bdfplus%20format%20description.html>.
The files are read in two steps: first the header is read
and then the signals (using the header object as a parameter).
Author: Jan Vis [aut, cre]
Maintainer: Jan Vis <jan@visconsultancy.eu>
Diff between edfReader versions 1.1.1 dated 2016-04-18 and 1.1.2 dated 2017-05-21
DESCRIPTION | 16 +-- MD5 | 34 ++++---- NEWS.md | 6 + R/edfReader.R | 5 - R/readHeaderFunctions.R | 5 - R/readSignalFunctions.R | 7 - R/s3functions.R | 1 build/vignette.rds |binary inst/doc/edfReaderVignette.Rmd | 3 inst/doc/edfReaderVignette.html | 123 +++++++++++++++--------------- man/edfReader.Rd | 8 - man/readEdfHeader.Rd | 4 man/readEdfSignals.Rd | 8 - tests/testthat/testCSampleFiles.R | 1 tests/testthat/testDSampleFiles.R | 1 tests/testthat/testFromTill.R | 6 - tests/testthat/testReadEdfSignalsParams.R | 1 vignettes/edfReaderVignette.Rmd | 3 18 files changed, 127 insertions(+), 105 deletions(-)
Title: Flexible Regression Models for Survival Data
Description: Programs for Martinussen and Scheike (2006), `Dynamic Regression
Models for Survival Data', Springer Verlag. Plus more recent developments.
Additive survival model, semiparametric proportional odds model, fast cumulative
residuals, excess risk models and more. Flexible competing risks regression
including GOF-tests. Two-stage frailty modelling.
PLS for the additive risk model. Lasso in the 'ahaz' package.
Author: Thomas Scheike with contributions from Torben Martinussen, Jeremy Silver
and Klaus Holst
Maintainer: Thomas Scheike <ts@biostat.ku.dk>
Diff between timereg versions 1.9.0 dated 2016-10-06 and 1.9.1 dated 2017-05-21
timereg-1.9.0/timereg/man/two.stage.reg.Rd |only timereg-1.9.1/timereg/DESCRIPTION | 20 - timereg-1.9.1/timereg/MD5 | 141 +++---- timereg-1.9.1/timereg/NAMESPACE | 11 timereg-1.9.1/timereg/R/Gprop-odds.r | 104 +++++ timereg-1.9.1/timereg/R/aalen.r | 13 timereg-1.9.1/timereg/R/additive-compSs.r | 2 timereg-1.9.1/timereg/R/base.r | 62 +++ timereg-1.9.1/timereg/R/clusterindex-reshape.r | 8 timereg-1.9.1/timereg/R/comprisk.r | 352 +++++++++++++++++- timereg-1.9.1/timereg/R/cox-aalen.r | 41 +- timereg-1.9.1/timereg/R/cox.ipw.r | 44 ++ timereg-1.9.1/timereg/R/cox.marg.r | 5 timereg-1.9.1/timereg/R/event.r | 35 + timereg-1.9.1/timereg/R/event.split.r | 43 ++ timereg-1.9.1/timereg/R/glm-comprisk.r | 1 timereg-1.9.1/timereg/R/ipcw-residualmean.r | 152 +++++++ timereg-1.9.1/timereg/R/kmplot.r | 1 timereg-1.9.1/timereg/R/krylow.pls.r | 41 ++ timereg-1.9.1/timereg/R/mgresid.r | 136 ++++++ timereg-1.9.1/timereg/R/new.aalen.r | 223 +++++++++++ timereg-1.9.1/timereg/R/new.cox-aalen.r | 180 +++++++++ timereg-1.9.1/timereg/R/new.dynreg.r | 181 +++++++++ timereg-1.9.1/timereg/R/new.pe-sasieni.r | 58 ++ timereg-1.9.1/timereg/R/new.prop-excess.r | 76 +++ timereg-1.9.1/timereg/R/new.timecox.r | 110 +++++ timereg-1.9.1/timereg/R/plots.r | 36 + timereg-1.9.1/timereg/R/predict-timereg.r | 184 +++++++++ timereg-1.9.1/timereg/R/prop-odds-subdist.r | 128 ++++++ timereg-1.9.1/timereg/R/prop-odds.r | 107 +++++ timereg-1.9.1/timereg/R/qcut.r | 36 + timereg-1.9.1/timereg/R/residualsTimereg.r | 1 timereg-1.9.1/timereg/R/restricted.residual.mean.r | 63 +++ timereg-1.9.1/timereg/R/sim-pc-hazard.r |only timereg-1.9.1/timereg/R/timereg-copy-package.R |only timereg-1.9.1/timereg/R/two-stage-reg.r | 141 +++++++ timereg-1.9.1/timereg/man/Event.Rd |only timereg-1.9.1/timereg/man/Gprop.odds.Rd | 172 ++++---- timereg-1.9.1/timereg/man/aalen.Rd | 198 +++++----- timereg-1.9.1/timereg/man/comp.risk.Rd | 315 ++++++++-------- timereg-1.9.1/timereg/man/const.Rd | 17 timereg-1.9.1/timereg/man/cox.Rd | 17 timereg-1.9.1/timereg/man/cox.aalen.Rd | 276 +++++++------- timereg-1.9.1/timereg/man/cox.ipw.Rd | 76 ++- timereg-1.9.1/timereg/man/cum.residuals.Rd | 82 ++-- timereg-1.9.1/timereg/man/dynreg.Rd | 220 +++++------ timereg-1.9.1/timereg/man/event.split.Rd | 51 +- timereg-1.9.1/timereg/man/internal-addreg.Rd | 11 timereg-1.9.1/timereg/man/krylow.pls.Rd | 47 +- timereg-1.9.1/timereg/man/mypbc.Rd |only timereg-1.9.1/timereg/man/pava.pred.Rd |only timereg-1.9.1/timereg/man/pc.hazard.Rd |only timereg-1.9.1/timereg/man/pe.sasieni.Rd | 86 ++-- timereg-1.9.1/timereg/man/plot.aalen.Rd | 91 ++-- timereg-1.9.1/timereg/man/plot.cum.residuals.Rd | 112 +++-- timereg-1.9.1/timereg/man/plot.dynreg.Rd | 94 ++-- timereg-1.9.1/timereg/man/predict.timereg.Rd | 119 +++--- timereg-1.9.1/timereg/man/prep.comp.risk.Rd | 83 ++-- timereg-1.9.1/timereg/man/print.aalen.Rd | 20 - timereg-1.9.1/timereg/man/prop.Rd | 29 + timereg-1.9.1/timereg/man/prop.excess.Rd | 122 +++--- timereg-1.9.1/timereg/man/prop.odds.Rd | 176 ++++----- timereg-1.9.1/timereg/man/prop.odds.subdist.Rd | 194 +++++---- timereg-1.9.1/timereg/man/qcut.Rd |only timereg-1.9.1/timereg/man/res.mean.Rd | 218 ++++++----- timereg-1.9.1/timereg/man/restricted.residual.mean.Rd | 71 ++- timereg-1.9.1/timereg/man/sim.cox.Rd |only timereg-1.9.1/timereg/man/summary.aalen.Rd | 31 + timereg-1.9.1/timereg/man/summary.cum.residuals.Rd | 24 - timereg-1.9.1/timereg/man/timecox.Rd | 190 ++++----- timereg-1.9.1/timereg/man/two.stage.Rd |only timereg-1.9.1/timereg/man/wald.test.Rd | 47 +- timereg-1.9.1/timereg/src/aalen.c | 9 timereg-1.9.1/timereg/src/comprisk.c | 5 timereg-1.9.1/timereg/src/cox-aalen.c | 19 timereg-1.9.1/timereg/src/mgresid.c | 9 timereg-1.9.1/timereg/src/timeregister.c |only 77 files changed, 4358 insertions(+), 1609 deletions(-)
Title: Fast Nearest Neighbour Search (Wraps ANN Library) Using L2
Metric
Description: Finds the k nearest neighbours for every point in a given dataset
in O(N log N) time using Arya and Mount's ANN library (v1.1.3). There is
support for approximate as well as exact searches, fixed radius searches
and 'bd' as well as 'kd' trees. The distance is computed using the L2
(Euclidean) metric. Please see package 'RANN.L1' for the same
functionality using the L1 (Manhattan, taxicab) metric.
Author: Sunil Arya and David Mount (for ANN), Samuel E. Kemp, Gregory Jefferis
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Diff between RANN versions 2.5 dated 2015-04-20 and 2.5.1 dated 2017-05-21
DESCRIPTION | 21 +++++++++------ MD5 | 17 ++++++------ NAMESPACE | 2 - NEWS | 8 ++++++ R/nn.R | 6 ++-- README.md | 10 +++++-- man/RANN-package.Rd | 5 +-- man/nn2.Rd | 62 +++++++++++++++++++++++------------------------ src/init.c |only tests/testthat/test-nn.R | 11 ++++++++ 10 files changed, 85 insertions(+), 57 deletions(-)
Title: Gaussian Mixture Modelling for Model-Based Clustering,
Classification, and Density Estimation
Description: Gaussian finite mixture models fitted via EM algorithm for model-based clustering, classification, and density estimation, including Bayesian regularization, dimension reduction for visualisation, and resampling-based inference.
Author: Chris Fraley [aut],
Adrian E. Raftery [aut],
Luca Scrucca [aut, cre],
Thomas Brendan Murphy [ctb],
Michael Fop [ctb]
Maintainer: Luca Scrucca <luca.scrucca@unipg.it>
Diff between mclust versions 5.2.3 dated 2017-03-13 and 5.3 dated 2017-05-21
mclust-5.2.3/mclust/man/print.clustCombi.Rd |only mclust-5.3/mclust/DESCRIPTION | 17 mclust-5.3/mclust/MD5 | 108 +- mclust-5.3/mclust/NAMESPACE | 52 - mclust-5.3/mclust/R/bootstrap.R | 38 mclust-5.3/mclust/R/clustCombi.R | 585 ++++++++++---- mclust-5.3/mclust/R/densityMclust.R | 17 mclust-5.3/mclust/R/gmmhd.R |only mclust-5.3/mclust/R/icl.R | 2 mclust-5.3/mclust/R/impute.R |only mclust-5.3/mclust/R/init.R | 6 mclust-5.3/mclust/R/mclust.R | 550 ++++++++----- mclust-5.3/mclust/R/mclustaddson.R | 34 mclust-5.3/mclust/R/mclustda.R | 44 - mclust-5.3/mclust/R/mclustdr.R | 396 +++++++++ mclust-5.3/mclust/R/options.R | 2 mclust-5.3/mclust/R/util.R | 172 ---- mclust-5.3/mclust/data/Baudry_etal_2010_JCGS_examples.rda |binary mclust-5.3/mclust/data/GvHD.rda |binary mclust-5.3/mclust/data/acidity.rda |binary mclust-5.3/mclust/data/chevron.rda |binary mclust-5.3/mclust/data/cross.rda |binary mclust-5.3/mclust/data/diabetes.rda |binary mclust-5.3/mclust/data/thyroid.rda |binary mclust-5.3/mclust/data/wreath.rda |binary mclust-5.3/mclust/inst/NEWS | 52 - mclust-5.3/mclust/inst/doc/mclust.R | 9 mclust-5.3/mclust/inst/doc/mclust.Rmd | 11 mclust-5.3/mclust/inst/doc/mclust.html | 431 ++++------ mclust-5.3/mclust/man/Mclust.Rd | 23 mclust-5.3/mclust/man/MclustBootstrap.Rd | 4 mclust-5.3/mclust/man/MclustDA.Rd | 7 mclust-5.3/mclust/man/MclustDRsubsel.Rd |only mclust-5.3/mclust/man/cdensE.Rd | 6 mclust-5.3/mclust/man/cdfMclust.Rd | 2 mclust-5.3/mclust/man/clustCombi.Rd | 62 - mclust-5.3/mclust/man/clustCombiOptim.Rd |only mclust-5.3/mclust/man/combMat.Rd | 7 mclust-5.3/mclust/man/combiPlot.Rd | 6 mclust-5.3/mclust/man/combiTree.Rd |only mclust-5.3/mclust/man/cross.Rd | 3 mclust-5.3/mclust/man/cvMclustDA.Rd | 4 mclust-5.3/mclust/man/dens.Rd | 5 mclust-5.3/mclust/man/em.Rd | 5 mclust-5.3/mclust/man/emE.Rd | 3 mclust-5.3/mclust/man/estep.Rd | 5 mclust-5.3/mclust/man/estepE.Rd | 5 mclust-5.3/mclust/man/gmmhd.Rd |only mclust-5.3/mclust/man/imputeData.Rd | 30 mclust-5.3/mclust/man/imputePairs.Rd | 28 mclust-5.3/mclust/man/majorityVote.Rd |only mclust-5.3/mclust/man/mclustBIC.Rd | 10 mclust-5.3/mclust/man/mclustBootstrapLRT.Rd | 7 mclust-5.3/mclust/man/me.Rd | 5 mclust-5.3/mclust/man/me.weighted.Rd | 5 mclust-5.3/mclust/man/mstep.Rd | 5 mclust-5.3/mclust/man/mstepE.Rd | 5 mclust-5.3/mclust/man/plot.clustCombi.Rd | 29 mclust-5.3/mclust/vignettes/mclust.Rmd | 11 59 files changed, 1738 insertions(+), 1070 deletions(-)
Title: Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic'
Data)
Description: Provides function to read data from the 'Igor Pro' data analysis
program by Wavemetrics. The data formats supported are 'Igor' packed
experiment format (pxp) and 'Igor' binary wave (ibw). See:
http://www.wavemetrics.com/ for details. Also includes functions to load
special pxp files produced by the 'Igor Pro' 'Neuromatic' and 'Nclamp'
packages for recording and analysing neuronal data. See
http://www.neuromatic.thinkrandom.com/ for details.
Author: Greg Jefferis with contributions from Thomas Braun
Maintainer: Greg Jefferis <jefferis@gmail.com>
Diff between IgorR versions 0.8 dated 2015-05-28 and 0.8.1 dated 2017-05-21
DESCRIPTION | 7 ++++--- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 5 ++++- NEWS | 4 ++++ R/ReadIgorBinary.R | 1 + R/ReadNclamp.R | 1 + README.md | 6 +++--- man/IgorR-package.Rd | 5 ++--- man/IgorR-private.Rd | 10 ++-------- man/ReadAllNclampLogTables.Rd | 3 +-- man/ReadNclampLogTable.Rd | 5 ++--- man/SummariseSweepFile.Rd | 7 +++---- man/SweepFilesToDataFrame.Rd | 11 +++++------ man/UpdateSweepDataFrame.Rd | 3 +-- man/WaveToTimeSeries.Rd | 7 +++---- man/read.ibw.Rd | 7 +++---- man/read.pxp.Rd | 19 +++++++++---------- man/tsp.igorwave.Rd | 9 ++++----- 18 files changed, 69 insertions(+), 75 deletions(-)
Title: Generate Functions to Get or Set Global Options
Description: It provides more controls on the option values such as validation
and filtering on the values, making options invisible or private.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GlobalOptions versions 0.0.11 dated 2017-03-06 and 0.0.12 dated 2017-05-21
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 6 ++++++ R/class.R | 6 +++--- R/setGlobalOptions.R | 32 ++++++++++++++++++++++---------- inst/doc/GlobalOptions.html | 10 +++++----- man/setGlobalOptions.rd | 19 ++++++++++--------- tests/testthat/test.R | 14 ++++++++++++++ 8 files changed, 71 insertions(+), 38 deletions(-)
Title: Dynamic Modeling in R
Description: Intensive longitudinal data have become increasingly prevalent in
various scientific disciplines. Many such data sets are noisy, multivariate,
and multi-subject in nature. The change functions may also be continuous, or
continuous but interspersed with periods of discontinuities (i.e., showing
regime switches). The package \pkg{dynr} (Dynamic Modeling in R) is an R package
that implements a set of computationally efficient algorithms for handling a
broad class of linear and nonlinear discrete- and continuous-time models with
regime-switching properties under the constraint of linear Gaussian measurement
functions. The discrete-time models can generally take on the form of a state-
space or difference equation model. The continuous-time models are generally
expressed as a set of ordinary or stochastic differential equations. All
estimation and computations are performed in C, but users are provided with the
option to specify the model of interest via a set of simple and easy-to-learn
model specification functions in R. Model fitting can be performed using single-
subject time series data or multiple-subject longitudinal data.
Author: Lu Ou [aut],
Michael D. Hunter [aut, cre],
Sy-Miin Chow [aut]
Maintainer: Michael D. Hunter <mhunter.ou@gmail.com>
Diff between dynr versions 0.1.9-20 dated 2017-02-24 and 0.1.10-10 dated 2017-05-21
DESCRIPTION | 47 + MD5 | 175 +++--- NAMESPACE | 3 NEWS | 18 R/dataDoc.R | 71 ++ R/dynrCook.R | 148 ++--- R/dynrData.R | 10 R/dynrFuncAddress.R | 2 R/dynrMi.R |only R/dynrModel.R | 36 + R/dynrModelInternal.R | 4 R/dynrPlot.R | 37 + R/dynrRecipe.R | 586 ++++++++++++++++++++--- R/dynrVersion.R | 2 build/partial.rdb |binary build/vignette.rds |only data/EMG.txt.gz |binary data/EMGsim.txt.gz |binary data/NonlinearDFAsim.txt.gz |binary data/Oscillator.txt.gz |only data/PPsim.txt.gz |binary data/RSPPsim.txt.gz |binary data/datalist | 11 demo/00Index | 13 demo/LinearSDE.R | 67 -- demo/RSLinearDiscrete.R | 23 demo/RSLinearDiscreteYang.R | 10 demo/RSNonlinearDiscrete.R | 2 demo/RSNonlinearODE.R | 2 demo/initialExo.R |only inst/REFERENCES.bib |only inst/doc |only inst/models/passing |only man/EMG.Rd | 58 +- man/EMGsim.Rd | 66 +- man/NonlinearDFAsim.Rd | 70 +- man/Oscillator.Rd |only man/PPsim.Rd | 52 +- man/RSPPsim.Rd | 58 +- man/coef.dynrCook.Rd | 76 +- man/confint.dynrCook.Rd | 84 +-- man/diag-character-method.Rd | 60 +- man/dynr-package.Rd | 57 +- man/dynr.cook.Rd | 104 ++-- man/dynr.data.Rd | 90 +-- man/dynr.ggplot.Rd | 143 +++-- man/dynr.ldl.Rd | 38 - man/dynr.mi.Rd |only man/dynr.model.Rd | 112 ++-- man/dynr.plotFreq.Rd | 64 +- man/dynrCook-class.Rd | 37 - man/dynrDynamics-class.Rd | 36 - man/dynrInitial-class.Rd | 28 - man/dynrMeasurement-class.Rd | 28 - man/dynrModel-class.Rd | 36 - man/dynrNoise-class.Rd | 28 - man/dynrRecipe-class.Rd | 50 - man/dynrRegimes-class.Rd | 28 - man/dynrTrans-class.Rd | 28 - man/internalModelPrep.Rd | 82 +-- man/logLik.dynrCook.Rd | 70 +- man/names-dynrCook-method.Rd | 32 - man/names-dynrModel-method.Rd | 32 - man/nobs.dynrCook.Rd | 54 +- man/nobs.dynrModel.Rd | 54 +- man/plot.dynrCook.Rd | 70 +- man/plotFormula.Rd | 58 +- man/prep.formulaDynamics.Rd | 157 +++--- man/prep.initial.Rd | 153 ++++-- man/prep.loadings.Rd | 112 ++-- man/prep.matrixDynamics.Rd | 110 ++-- man/prep.measurement.Rd | 108 ++-- man/prep.noise.Rd | 78 ++- man/prep.regimes.Rd | 138 +++-- man/prep.tfun.Rd | 87 ++- man/printex.Rd | 110 ++-- man/summary.dynrCook.Rd | 48 - man/vcov.dynrCook.Rd | 40 - src/brekfis.c | 1065 +++++++++++++++++++++++++++--------------- src/brekfis.h | 19 src/data_structure.h | 6 src/ekf.c | 116 ++-- src/ekf.h | 85 +-- src/estimation.c | 50 - src/glue.c | 6 src/mainR.c | 805 ++++++++++--------------------- src/math_function.c | 118 ++-- src/math_function.h | 18 src/numeric_derivatives.c | 10 src/numeric_derivatives.h | 2 src/wrappernegloglike.c | 200 +++---- src/wrappernegloglike.h | 2 vignettes |only 93 files changed, 3926 insertions(+), 2867 deletions(-)
More information about PhenotypeSimulator at CRAN
Permanent link
Title: Time Series Missing Value Imputation
Description: Imputation (replacement) of missing values in univariate time
series.
Author: Steffen Moritz
Maintainer: Steffen Moritz <steffen.moritz10@gmail.com>
Diff between imputeTS versions 2.2 dated 2017-04-23 and 2.3 dated 2017-05-21
imputeTS-2.2/imputeTS/inst/doc/Introduction.Rnw |only imputeTS-2.2/imputeTS/inst/doc/Introduction.pdf |only imputeTS-2.2/imputeTS/vignettes/Introduction.Rnw |only imputeTS-2.3/imputeTS/DESCRIPTION | 8 +-- imputeTS-2.3/imputeTS/MD5 | 23 +++++----- imputeTS-2.3/imputeTS/NEWS | 11 ++++ imputeTS-2.3/imputeTS/R/na.kalman.R | 2 imputeTS-2.3/imputeTS/R/na.seadec.R | 6 ++ imputeTS-2.3/imputeTS/R/na.seasplit.R | 6 ++ imputeTS-2.3/imputeTS/README.md | 9 +++ imputeTS-2.3/imputeTS/build/vignette.rds |binary imputeTS-2.3/imputeTS/inst/doc/imputeTS-Time-Series-Missing-Value-Imputation-in-R.Rnw |only imputeTS-2.3/imputeTS/inst/doc/imputeTS-Time-Series-Missing-Value-Imputation-in-R.pdf |only imputeTS-2.3/imputeTS/tests/testthat/test-na.seasplit.R | 6 +- imputeTS-2.3/imputeTS/vignettes/imputeTS-Time-Series-Missing-Value-Imputation-in-R.Rnw |only imputeTS-2.3/imputeTS/vignettes/titletoc.sty |only 16 files changed, 52 insertions(+), 19 deletions(-)
Title: Geographically-Weighted Models
Description: In GWmodel, we introduce techniques from a particular branch of spatial statistics,termed geographically-weighted (GW) models. GW models suit situations when data are not described well by some global model, but where there are spatial regions where a suitably localised calibration provides a better description. GWmodel includes functions to calibrate: GW summary statistics, GW principal components analysis, GW discriminant analysis and various forms of GW regression; some of which are provided in basic and robust (outlier resistant) forms.
Author: Binbin Lu[aut], Paul Harris[aut], Martin Charlton[aut], Chris Brunsdon[aut], Tomoki Nakaya[aut], Isabella Gollini[ctb]
Maintainer: Binbin Lu <binbinlu@whu.edu.cn>
Diff between GWmodel versions 2.0-3 dated 2017-03-28 and 2.0-4 dated 2017-05-21
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/GeneralizedGWR.r | 24 ++++++++++++++++-------- R/gwr.basic.r | 2 +- R/zzz.r | 2 +- 5 files changed, 26 insertions(+), 18 deletions(-)
Title: 'd3.js' Utilities for R
Description: Helper functions for using 'd3.js' in R.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Kent Russell [aut, cre] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between d3r versions 0.6.4 dated 2017-04-27 and 0.6.5 dated 2017-05-21
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 ++++++ R/dependencies.R | 4 ++-- README.md | 10 +++++++++- inst/www/d3/v4/API.md | 22 +++++++++++++++++++++- inst/www/d3/v4/dist/d3.min.js | 16 ++++++++-------- 7 files changed, 56 insertions(+), 22 deletions(-)
Title: Adaptive Sum of Powered Score Test
Description: R codes for the (adaptive) Sum of Powered Score ('SPU' and 'aSPU')
tests, inverse variance weighted Sum of Powered score ('SPUw' and 'aSPUw') tests
and gene-based and some pathway based association tests (Pathway based Sum of
Powered Score tests ('SPUpath'), adaptive 'SPUpath' ('aSPUpath') test, 'GEEaSPU'
test for multiple traits - single 'SNP' (single nucleotide polymorphism)
association in generalized estimation equations, 'MTaSPUs' test for multiple
traits - single 'SNP' association with Genome Wide Association Studies ('GWAS')
summary statistics, Gene-based Association Test that uses an extended 'Simes'
procedure ('GATES'), Hybrid Set-based Test ('HYST') and extended version
of 'GATES' test for pathway-based association testing ('GATES-Simes'). ).
The tests can be used with genetic and other data sets with covariates. The
response variable is binary or quantitative. Summary; (1) Single trait-'SNP' set
association with individual-level data ('aSPU', 'aSPUw', 'aSPUr'), (2) Single trait-'SNP'
set association with summary statistics ('aSPUs'), (3) Single trait-pathway
association with individual-level data ('aSPUpath'), (4) Single trait-pathway
association with summary statistics ('aSPUsPath'), (5) Multiple traits-single
'SNP' association with individual-level data ('GEEaSPU'), (6) Multiple traits-
single 'SNP' association with summary statistics ('MTaSPUs'), (7) Multiple traits-'SNP' set association with summary statistics('MTaSPUsSet'), (8) Multiple traits-pathway association with summary statistics('MTaSPUsSetPath').
Author: Il-Youp Kwak and others (See Author(s) in each function manual)
Maintainer: Il-Youp Kwak <ikwak@umn.edu>
Diff between aSPU versions 1.46 dated 2016-11-08 and 1.47 dated 2017-05-21
aSPU-1.46/aSPU/R/MTaSPUsSetC.R |only aSPU-1.46/aSPU/R/RcppExports.R |only aSPU-1.46/aSPU/R/aSPUpermC2.R |only aSPU-1.46/aSPU/R/aSPUsimC2.R |only aSPU-1.46/aSPU/R/aSPUwpermC.R |only aSPU-1.46/aSPU/man/MTaSPUsSetC.Rd |only aSPU-1.46/aSPU/src |only aSPU-1.47/aSPU/DESCRIPTION | 20 - aSPU-1.47/aSPU/MD5 | 115 +++--- aSPU-1.47/aSPU/NAMESPACE | 7 aSPU-1.47/aSPU/R/GATES2.R | 1 aSPU-1.47/aSPU/R/GatesSimes.R | 1 aSPU-1.47/aSPU/R/Hyst.R | 1 aSPU-1.47/aSPU/R/MTaSPUs.R | 6 aSPU-1.47/aSPU/R/MTaSPUsSet.R | 1 aSPU-1.47/aSPU/R/MTaSPUsSetPath.R | 3 aSPU-1.47/aSPU/R/MTaSPUsSetScore.R | 1 aSPU-1.47/aSPU/R/aSPU.R | 5 aSPU-1.47/aSPU/R/aSPUpath.r | 80 +--- aSPU-1.47/aSPU/R/aSPUpath2.r |only aSPU-1.47/aSPU/R/aSPUsPath.r | 21 - aSPU-1.47/aSPU/R/aSPUsPath2.r |only aSPU-1.47/aSPU/R/aSPUw.R | 7 aSPU-1.47/aSPU/R/estcov.R | 9 aSPU-1.47/aSPU/R/getlogitp.R | 1 aSPU-1.47/aSPU/R/plotPmat.r | 1 aSPU-1.47/aSPU/R/simPathAR1SNP.R | 1 aSPU-1.47/aSPU/R/util.R | 15 aSPU-1.47/aSPU/README.md | 17 aSPU-1.47/aSPU/build/vignette.rds |binary aSPU-1.47/aSPU/inst/doc/MTaSPUsSet.R | 18 - aSPU-1.47/aSPU/inst/doc/MTaSPUsSet.Rmd | 24 - aSPU-1.47/aSPU/inst/doc/MTaSPUsSet.html | 517 ++++++++++++++++++++---------- aSPU-1.47/aSPU/inst/doc/aSPUstat.Rmd | 2 aSPU-1.47/aSPU/inst/doc/aSPUstat.html | 550 ++++++++++++++++++++++---------- aSPU-1.47/aSPU/man/GATES2.Rd | 7 aSPU-1.47/aSPU/man/GEEaSPU.Rd | 7 aSPU-1.47/aSPU/man/GatesSimes.Rd | 7 aSPU-1.47/aSPU/man/Hyst.Rd | 7 aSPU-1.47/aSPU/man/MTaSPUs.Rd | 11 aSPU-1.47/aSPU/man/MTaSPUsSet.Rd | 8 aSPU-1.47/aSPU/man/MTaSPUsSetPath.Rd | 9 aSPU-1.47/aSPU/man/MTaSPUsSetScore.Rd | 8 aSPU-1.47/aSPU/man/aSPU.Rd | 7 aSPU-1.47/aSPU/man/aSPUpath.Rd | 7 aSPU-1.47/aSPU/man/aSPUpath2.Rd |only aSPU-1.47/aSPU/man/aSPUr.Rd | 7 aSPU-1.47/aSPU/man/aSPUs.Rd | 7 aSPU-1.47/aSPU/man/aSPUsD.Rd | 7 aSPU-1.47/aSPU/man/aSPUsPath.Rd | 9 aSPU-1.47/aSPU/man/aSPUsPath2.Rd |only aSPU-1.47/aSPU/man/aSPUw.Rd | 7 aSPU-1.47/aSPU/man/estcov.Rd | 11 aSPU-1.47/aSPU/man/getlogitp.Rd | 1 aSPU-1.47/aSPU/man/minP.Rd | 7 aSPU-1.47/aSPU/man/plotPmat.Rd | 7 aSPU-1.47/aSPU/man/pruneSNP.Rd | 7 aSPU-1.47/aSPU/man/simPathAR1Snp.Rd | 1 aSPU-1.47/aSPU/vignettes/MTaSPUsSet.Rmd | 24 - aSPU-1.47/aSPU/vignettes/aSPUstat.Rmd | 2 60 files changed, 996 insertions(+), 603 deletions(-)
Title: A GUI to View, Design and Export Various Graphs of Data
Description: Provides a graphical user interface for viewing and designing various types of graphs of the data. The graphs can be saved in different formats of an image.
Author: Dhammapal Bharne, Vaibhav Vindal
Maintainer: Dhammapal Bharne <dhammapalb@uohyd.ac.in>
Diff between plfMA versions 1.0.3 dated 2016-06-13 and 1.0.4 dated 2017-05-21
DESCRIPTION | 13 +++++----- MD5 | 10 ++++---- NAMESPACE | 1 R/plfMA.R | 17 ++++++------- man/plfMA-package.Rd | 44 ++++++++++++++++++------------------ man/plfMA.Rd | 62 +++++++++++++++++++++------------------------------ 6 files changed, 69 insertions(+), 78 deletions(-)