Title: Load Census TIGER/Line Shapefiles into R
Description: Download TIGER/Line shapefiles from the United States Census Bureau
and load into R as 'SpatialDataFrame' or 'sf' objects.
Author: Kyle Walker [aut, cre],
Bob Rudis [ctb]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between tigris versions 0.5.1 dated 2017-05-09 and 0.5.3 dated 2017-05-26
DESCRIPTION | 10 +- MD5 | 114 ++++++++++++++--------------- R/enumeration_units.R | 45 +++++++---- R/landmarks.R | 2 R/legislative.R | 2 R/pumas.R | 2 R/states.R | 2 README.md | 4 - man/alaska_native_regional_corporations.Rd | 1 man/area_water.Rd | 1 man/block_groups.Rd | 1 man/blocks.Rd | 1 man/coastline.Rd | 1 man/combined_statistical_areas.Rd | 1 man/congressional_districts.Rd | 1 man/core_based_statistical_areas.Rd | 1 man/counties.Rd | 1 man/county_subdivisions.Rd | 1 man/divisions.Rd | 1 man/filter_place.Rd | 1 man/filter_state.Rd | 1 man/fips_codes.Rd | 1 man/geo_join.Rd | 1 man/grep_place.Rd | 1 man/grep_state.Rd | 1 man/is_tigris.Rd | 1 man/landmarks.Rd | 1 man/linear_water.Rd | 1 man/list_counties.Rd | 1 man/list_places.Rd | 1 man/list_states.Rd | 1 man/lookup_code.Rd | 1 man/metro_divisions.Rd | 1 man/military.Rd | 1 man/nation.Rd | 1 man/native_areas.Rd | 1 man/new_england.Rd | 1 man/places.Rd | 1 man/primary_roads.Rd | 1 man/primary_secondary_roads.Rd | 1 man/pumas.Rd | 1 man/rails.Rd | 1 man/rbind_tigris.Rd | 1 man/regions.Rd | 1 man/roads.Rd | 1 man/school_districts.Rd | 1 man/state_legislative_districts.Rd | 1 man/states.Rd | 3 man/tigris-exports.Rd | 3 man/tigris.Rd | 1 man/tigris_type.Rd | 1 man/tracts.Rd | 1 man/tribal_block_groups.Rd | 1 man/tribal_census_tracts.Rd | 1 man/tribal_subdivisions_national.Rd | 1 man/urban_areas.Rd | 1 man/voting_districts.Rd | 1 man/zctas.Rd | 5 - 58 files changed, 102 insertions(+), 137 deletions(-)
Title: Optimal Stratification in Stratified Sampling
Description: An Optimization Algorithm Applied to
Stratification Problem.This function aims
at constructing optimal strata with an optimization algorithm
based on a global optimisation technique called Biased
Random Key Genetic Algorithms.
Author: Jose Brito, Pedro Silva and Tomas Veiga
Maintainer: Jose Brito <jambrito@gmail.com>
Diff between stratbr versions 1.1 dated 2017-05-19 and 1.2 dated 2017-05-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/stratbr.R | 14 +++++++------- man/BSSM_FD.Rd | 11 ++++++----- man/stratbr.Rd | 17 +++++++++-------- 5 files changed, 30 insertions(+), 28 deletions(-)
Title: Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Description: Helps with quality checks, visualizations
and analysis of mass spectrometry data, coming from proteomics
experiments. The package is developed, tested and used at the Functional
Genomics Center Zurich. We use this package mainly for prototyping,
teaching, and having fun with proteomics data. But it can also be
used to do data analysis for small scale data sets.
Author: Christian Panse [aut, cre],
Jonas Grossmann [aut],
Simon Barkow-Oesterreicher [ctb]
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Diff between protViz versions 0.2.28 dated 2017-01-30 and 0.2.31 dated 2017-05-26
protViz-0.2.28/protViz/inst/shiny-examples/PTM_MarkerFinder/app.R |only protViz-0.2.31/protViz/DESCRIPTION | 21 +- protViz-0.2.31/protViz/MD5 | 67 ++++---- protViz-0.2.31/protViz/NAMESPACE | 45 +++-- protViz-0.2.31/protViz/R/PTM_MarkerFinder.R | 2 protViz-0.2.31/protViz/R/findNN.R | 2 protViz-0.2.31/protViz/R/findNN_.R | 2 protViz-0.2.31/protViz/R/lcmsmap.R | 77 +++++----- protViz-0.2.31/protViz/R/mascot.R |only protViz-0.2.31/protViz/R/peakplot.R | 10 - protViz-0.2.31/protViz/R/psm.R | 21 +- protViz-0.2.31/protViz/R/ssrc.R |only protViz-0.2.31/protViz/R/zzz.R |only protViz-0.2.31/protViz/README.md | 3 protViz-0.2.31/protViz/build/vignette.rds |binary protViz-0.2.31/protViz/inst/NEWS.Rd | 23 ++ protViz-0.2.31/protViz/inst/doc/PTM_MarkerFinder.R | 8 - protViz-0.2.31/protViz/inst/doc/PTM_MarkerFinder.Rnw | 8 - protViz-0.2.31/protViz/inst/doc/PTM_MarkerFinder.pdf |binary protViz-0.2.31/protViz/inst/doc/protViz.R | 16 +- protViz-0.2.31/protViz/inst/doc/protViz.Rnw | 30 +-- protViz-0.2.31/protViz/inst/doc/protViz.pdf |binary protViz-0.2.31/protViz/inst/shiny-examples/PTM_MarkerFinder/ptm_marker_finder.R |only protViz-0.2.31/protViz/inst/shiny-examples/PTM_MarkerFinder/server.R |only protViz-0.2.31/protViz/inst/shiny-examples/PTM_MarkerFinder/ui.R |only protViz-0.2.31/protViz/inst/shiny-examples/peakplot/server.R | 14 + protViz-0.2.31/protViz/inst/shiny-examples/peakplot/ui.R | 18 +- protViz-0.2.31/protViz/man/PTM_MarkerFinder.Rd | 27 ++- protViz-0.2.31/protViz/man/lcmsmap.Rd | 12 + protViz-0.2.31/protViz/man/peakplot.Rd | 1 protViz-0.2.31/protViz/man/plot.mascot_query.Rd |only protViz-0.2.31/protViz/man/ssrc.Rd |only protViz-0.2.31/protViz/man/summary.mascot.Rd |only protViz-0.2.31/protViz/src/Makevars | 2 protViz-0.2.31/protViz/src/findNN.c | 2 protViz-0.2.31/protViz/src/findNN_.cpp | 2 protViz-0.2.31/protViz/src/protViz_init.c |only protViz-0.2.31/protViz/vignettes/PTM_MarkerFinder.Rnw | 8 - protViz-0.2.31/protViz/vignettes/protViz.Rnw | 30 +-- protViz-0.2.31/protViz/vignettes/protViz.bib | 14 + 40 files changed, 290 insertions(+), 175 deletions(-)
Title: Estimating Time-Varying k-Order Mixed Graphical Models
Description: Estimation of k-Order time-varying Mixed Graphical Models and mixed VAR(p) models via elastic-net regularized neighborhood regression.
Author: Jonas Haslbeck
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Diff between mgm versions 1.1-7 dated 2016-10-20 and 1.2-0 dated 2017-05-26
mgm-1.1-7/mgm/R/RcppExports.R |only mgm-1.1-7/mgm/R/VARreshape.R |only mgm-1.1-7/mgm/R/calc.EBIC.R |only mgm-1.1-7/mgm/R/confusion.R |only mgm-1.1-7/mgm/R/estimation_msg.R |only mgm-1.1-7/mgm/R/mgmfit.R |only mgm-1.1-7/mgm/R/mgmfit_core.R |only mgm-1.1-7/mgm/R/node.est.R |only mgm-1.1-7/mgm/R/plot.mgm.R |only mgm-1.1-7/mgm/R/plot.rs.R |only mgm-1.1-7/mgm/R/potts_parameter.R |only mgm-1.1-7/mgm/R/print.rs.R |only mgm-1.1-7/mgm/R/rs.mgm.R |only mgm-1.1-7/mgm/R/summary.mgm.R |only mgm-1.1-7/mgm/R/summary.rs.R |only mgm-1.1-7/mgm/R/tv.mgmfit.R |only mgm-1.1-7/mgm/R/tv.mgmsampler.R |only mgm-1.1-7/mgm/R/tv_var.mgm.R |only mgm-1.1-7/mgm/R/var.mgm.R |only mgm-1.1-7/mgm/man/autism_data.Rd |only mgm-1.1-7/mgm/man/confusion.Rd |only mgm-1.1-7/mgm/man/mgmfit.Rd |only mgm-1.1-7/mgm/man/plot.rs.Rd |only mgm-1.1-7/mgm/man/print.rs.Rd |only mgm-1.1-7/mgm/man/rs.mgm.Rd |only mgm-1.1-7/mgm/man/summary.mgm.Rd |only mgm-1.1-7/mgm/man/summary.rs.Rd |only mgm-1.1-7/mgm/man/tv.mgmfit.Rd |only mgm-1.1-7/mgm/man/tv.mgmsampler.Rd |only mgm-1.1-7/mgm/man/tv_var.mgm.Rd |only mgm-1.1-7/mgm/man/var.mgm.Rd |only mgm-1.1-7/mgm/src |only mgm-1.2-0/mgm/DESCRIPTION | 17 mgm-1.2-0/mgm/MD5 | 95 +-- mgm-1.2-0/mgm/NAMESPACE | 52 + mgm-1.2-0/mgm/NEWS | 23 mgm-1.2-0/mgm/R/DrawFG.R |only mgm-1.2-0/mgm/R/FlagSymmetric.R |only mgm-1.2-0/mgm/R/ModelMatrix.R |only mgm-1.2-0/mgm/R/bwSelPredict.R |only mgm-1.2-0/mgm/R/bwSelect.R |only mgm-1.2-0/mgm/R/calcLL.R |only mgm-1.2-0/mgm/R/calcNeighbors.R |only mgm-1.2-0/mgm/R/defunct_msg.R |only mgm-1.2-0/mgm/R/getSign.R |only mgm-1.2-0/mgm/R/glmnetRequirements.R |only mgm-1.2-0/mgm/R/lagData.R |only mgm-1.2-0/mgm/R/mgm.R |only mgm-1.2-0/mgm/R/mgmsampler.R | 403 ++++++++++++--- mgm-1.2-0/mgm/R/mvar.R |only mgm-1.2-0/mgm/R/mvarsampler.R |only mgm-1.2-0/mgm/R/nodeEst.R |only mgm-1.2-0/mgm/R/predict.mgm.R | 766 ++++++++++++++++++++++------- mgm-1.2-0/mgm/R/predictCore_stat.R |only mgm-1.2-0/mgm/R/print.mgm.R | 128 +++- mgm-1.2-0/mgm/R/startup_msg.R | 3 mgm-1.2-0/mgm/R/tvmgm.R |only mgm-1.2-0/mgm/R/tvmgmsampler.R |only mgm-1.2-0/mgm/R/tvmvar.R |only mgm-1.2-0/mgm/R/tvmvarsampler.R |only mgm-1.2-0/mgm/README.md | 7 mgm-1.2-0/mgm/data/PTSD_data.RData |only mgm-1.2-0/mgm/data/autism_data_large.RData |only mgm-1.2-0/mgm/data/fruitfly_data.RData |only mgm-1.2-0/mgm/data/mgm_data.RData |only mgm-1.2-0/mgm/data/mvar_data.RData |only mgm-1.2-0/mgm/data/restingstate_data.RData |only mgm-1.2-0/mgm/data/symptom_data.RData |only mgm-1.2-0/mgm/man/bwSelect.Rd |only mgm-1.2-0/mgm/man/datasets.Rd |only mgm-1.2-0/mgm/man/mgm-internal.Rd | 36 - mgm-1.2-0/mgm/man/mgm-package.Rd | 12 mgm-1.2-0/mgm/man/mgm.Rd |only mgm-1.2-0/mgm/man/mgmsampler.Rd | 262 ++++++++- mgm-1.2-0/mgm/man/mvar.Rd |only mgm-1.2-0/mgm/man/mvarsampler.Rd |only mgm-1.2-0/mgm/man/predict.mgm.Rd | 104 ++- mgm-1.2-0/mgm/man/print.mgm.Rd | 28 - mgm-1.2-0/mgm/man/tvmgm.Rd |only mgm-1.2-0/mgm/man/tvmgmsampler.Rd |only mgm-1.2-0/mgm/man/tvmvar.Rd |only mgm-1.2-0/mgm/man/tvmvarsampler.Rd |only 82 files changed, 1466 insertions(+), 470 deletions(-)
Title: Replicate and Analyse 'InterVA4'
Description: Provides an R version of the 'InterVA4' software (<http://www.interva.net>) for coding cause of death from verbal autopsies. It also provides simple graphical representation of individual and population level statistics.
Author: Zehang Li, Tyler McCormick, Sam Clark, Peter Byass
Maintainer: Zehang Li <lizehang@uw.edu>
Diff between InterVA4 versions 1.7.3 dated 2016-12-24 and 1.7.4 dated 2017-05-26
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- inst/NEWS.Rd | 7 ++++++- 3 files changed, 14 insertions(+), 9 deletions(-)
Title: Bayesian Model Averaging using Bayesian Adaptive Sampling
Description: Package for Bayesian Model Averaging in linear models and
generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors in GLMs of Li and Clyde (2015)
<arXiv:1503.06913>. Other model
selection criteria include AIC, BIC and Empirical Bayes estimates of g.
Sampling probabilities may be updated based on the sampled models
using Sampling w/out Replacement or an efficient MCMC algorithm
samples models using the BAS tree structure as an efficient hash table.
Uniform priors over all models or beta-binomial prior distributions on
model size are allowed, and for large p truncated priors on the model
space may be used. The user may force variables to always be included.
Details behind the sampling algorithm are provided in
Clyde, Ghosh and Littman (2010) <DOI:10.1198/jcgs.2010.09049>.
This material is based upon work supported by the National Science
Foundation under Grant DMS-1106891. Any opinions, findings, and
conclusions or recommendations expressed in this material are those of
the author(s) and do not necessarily reflect the views of the
National Science Foundation.
Author: Merlise Clyde [aut, cre, cph],
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb]
Maintainer: Merlise Clyde <clyde@stat.duke.edu>
Diff between BAS versions 1.4.5 dated 2017-03-31 and 1.4.6 dated 2017-05-26
BAS-1.4.5/BAS/R/EB.bma.R |only BAS-1.4.5/BAS/R/cv.summary.R |only BAS-1.4.5/BAS/R/image.bma.R |only BAS-1.4.5/BAS/R/plot.bma.R |only BAS-1.4.5/BAS/R/predict.bma.R |only BAS-1.4.5/BAS/R/summary.bma.R |only BAS-1.4.5/BAS/R/update.bma.R |only BAS-1.4.5/BAS/man/BAS-package.Rd |only BAS-1.4.5/BAS/man/EB.Rd |only BAS-1.4.5/BAS/man/TG-priors.Rd |only BAS-1.4.5/BAS/man/Uniform.Rd |only BAS-1.4.5/BAS/man/as.matrix.Rd |only BAS-1.4.5/BAS/man/bas.Rd |only BAS-1.4.5/BAS/man/bayesglm.Rd |only BAS-1.4.5/BAS/man/bin2int.Rd |only BAS-1.4.5/BAS/man/cchpriors.Rd |only BAS-1.4.5/BAS/man/coefficients.bma.Rd |only BAS-1.4.5/BAS/man/coefpriors.Rd |only BAS-1.4.5/BAS/man/confint.Rd |only BAS-1.4.5/BAS/man/cv.summary.bma.Rd |only BAS-1.4.5/BAS/man/diagnostic.Rd |only BAS-1.4.5/BAS/man/eplogprob-marg.Rd |only BAS-1.4.5/BAS/man/fitted.bma.Rd |only BAS-1.4.5/BAS/man/gprior.Rd |only BAS-1.4.5/BAS/man/hald.Rd |only BAS-1.4.5/BAS/man/hyper-g-n.Rd |only BAS-1.4.5/BAS/man/hyper-g.Rd |only BAS-1.4.5/BAS/man/hyper2d.Rd |only BAS-1.4.5/BAS/man/hypergeometric.Rd |only BAS-1.4.5/BAS/man/image.bma.Rd |only BAS-1.4.5/BAS/man/jeffreys.Rd |only BAS-1.4.5/BAS/man/plot-confint.Rd |only BAS-1.4.5/BAS/man/plot.bma.Rd |only BAS-1.4.5/BAS/man/plot.coefficients.Rd |only BAS-1.4.5/BAS/man/predict.bma.Rd |only BAS-1.4.5/BAS/man/summary.bma.Rd |only BAS-1.4.5/BAS/man/tcchpriors.Rd |only BAS-1.4.5/BAS/man/testBF-prior.Rd |only BAS-1.4.5/BAS/man/trunc.beta.binomial.Rd |only BAS-1.4.5/BAS/man/trunc.poisson.Rd |only BAS-1.4.5/BAS/man/update.bma.Rd |only BAS-1.4.6/BAS/DESCRIPTION | 24 +- BAS-1.4.6/BAS/MD5 | 176 ++++++++-------- BAS-1.4.6/BAS/NAMESPACE | 90 +++++--- BAS-1.4.6/BAS/NEWS.md | 15 + BAS-1.4.6/BAS/R/BAS-package.R |only BAS-1.4.6/BAS/R/EB.global.R |only BAS-1.4.6/BAS/R/as.matrix.R | 123 +++++++++-- BAS-1.4.6/BAS/R/bas.R | 336 +++++++++++++++++++++++++------ BAS-1.4.6/BAS/R/bas.gglm.R | 272 ++++++++++++++++++++----- BAS-1.4.6/BAS/R/betapriors.R | 336 ++++++++++++++++++++++++++++++- BAS-1.4.6/BAS/R/cch.R | 38 +++ BAS-1.4.6/BAS/R/coefficients.R | 129 +++++++---- BAS-1.4.6/BAS/R/confint.coef.R | 140 ++++++++++++ BAS-1.4.6/BAS/R/cv.summary.bas.R |only BAS-1.4.6/BAS/R/data.R |only BAS-1.4.6/BAS/R/diagnostics.R | 36 +++ BAS-1.4.6/BAS/R/eplogprob.R | 105 +++++++++ BAS-1.4.6/BAS/R/glm-fit.R | 64 +++++ BAS-1.4.6/BAS/R/hypergeometric1F1.R | 23 ++ BAS-1.4.6/BAS/R/hypergeometric2F1.R | 35 +++ BAS-1.4.6/BAS/R/image.bas.R |only BAS-1.4.6/BAS/R/interactions.R | 121 ++++++++++- BAS-1.4.6/BAS/R/modelpriors.R | 192 +++++++++++++++++ BAS-1.4.6/BAS/R/plot.bas.R |only BAS-1.4.6/BAS/R/plot.coef.bas.R |only BAS-1.4.6/BAS/R/predict.bas.R |only BAS-1.4.6/BAS/R/summary.bas.R |only BAS-1.4.6/BAS/R/update.bas.R |only BAS-1.4.6/BAS/build/vignette.rds |binary BAS-1.4.6/BAS/inst/doc/BAS-vignette.R | 24 +- BAS-1.4.6/BAS/inst/doc/BAS-vignette.Rmd | 18 - BAS-1.4.6/BAS/inst/doc/BAS-vignette.html | 190 ++++++++--------- BAS-1.4.6/BAS/inst/doc/BAS.R |only BAS-1.4.6/BAS/inst/doc/BAS.Rmd |only BAS-1.4.6/BAS/inst/doc/BAS.html |only BAS-1.4.6/BAS/man/BAS.Rd |only BAS-1.4.6/BAS/man/Bernoulli.Rd | 61 +++-- BAS-1.4.6/BAS/man/Bernoulli.heredity.Rd |only BAS-1.4.6/BAS/man/CCH.Rd |only BAS-1.4.6/BAS/man/EB.global.Rd | 64 +++-- BAS-1.4.6/BAS/man/EB.local.Rd |only BAS-1.4.6/BAS/man/Hald.Rd |only BAS-1.4.6/BAS/man/IC.prior.Rd |only BAS-1.4.6/BAS/man/Jeffreys.Rd |only BAS-1.4.6/BAS/man/TG.Rd |only BAS-1.4.6/BAS/man/bas.glm.Rd | 323 ++++++++++++++++------------- BAS-1.4.6/BAS/man/bas.lm.Rd |only BAS-1.4.6/BAS/man/bayesglm.fit.Rd |only BAS-1.4.6/BAS/man/beta.binomial.Rd | 52 +++- BAS-1.4.6/BAS/man/beta.prime.Rd | 47 +++- BAS-1.4.6/BAS/man/bodyfat.Rd | 141 ++++++------- BAS-1.4.6/BAS/man/coef.Rd |only BAS-1.4.6/BAS/man/confint.coef.Rd |only BAS-1.4.6/BAS/man/confint.pred.Rd | 74 ++++-- BAS-1.4.6/BAS/man/cv.summary.bas.Rd |only BAS-1.4.6/BAS/man/diagnostics.Rd |only BAS-1.4.6/BAS/man/eplogprob.Rd | 98 +++++---- BAS-1.4.6/BAS/man/eplogprob.marg.Rd |only BAS-1.4.6/BAS/man/fitted.Rd |only BAS-1.4.6/BAS/man/force.heredity.bas.Rd |only BAS-1.4.6/BAS/man/g.prior.Rd |only BAS-1.4.6/BAS/man/hyper.g.Rd |only BAS-1.4.6/BAS/man/hyper.g.n.Rd |only BAS-1.4.6/BAS/man/hypergeometric1F1.Rd | 50 +++- BAS-1.4.6/BAS/man/hypergeometric2F1.Rd |only BAS-1.4.6/BAS/man/image.Rd |only BAS-1.4.6/BAS/man/intrinsic.Rd | 75 ++++-- BAS-1.4.6/BAS/man/list2matrix.Rd |only BAS-1.4.6/BAS/man/list2matrix.which.Rd |only BAS-1.4.6/BAS/man/phi1.Rd |only BAS-1.4.6/BAS/man/plot.Rd |only BAS-1.4.6/BAS/man/plot.coef.Rd |only BAS-1.4.6/BAS/man/plot.confint.Rd |only BAS-1.4.6/BAS/man/predict.Rd |only BAS-1.4.6/BAS/man/predict.basglm.Rd | 102 +++++---- BAS-1.4.6/BAS/man/print.Rd |only BAS-1.4.6/BAS/man/protein.Rd | 48 +--- BAS-1.4.6/BAS/man/robust.Rd | 48 +++- BAS-1.4.6/BAS/man/summary.Rd |only BAS-1.4.6/BAS/man/tCCH.Rd |only BAS-1.4.6/BAS/man/testBF.prior.Rd |only BAS-1.4.6/BAS/man/tr.beta.binomial.Rd |only BAS-1.4.6/BAS/man/tr.poisson.Rd |only BAS-1.4.6/BAS/man/tr.power.prior.Rd | 66 +++--- BAS-1.4.6/BAS/man/uniform.Rd |only BAS-1.4.6/BAS/man/update.Rd |only BAS-1.4.6/BAS/man/which.matrix.Rd |only BAS-1.4.6/BAS/src/glm_mcmc.c | 162 ++++++-------- BAS-1.4.6/BAS/src/glm_sampleworep.c | 4 BAS-1.4.6/BAS/src/init.c | 6 BAS-1.4.6/BAS/src/mcmc_new.c | 153 +++++++------- BAS-1.4.6/BAS/src/sampleworep.c | 156 +++++++------- BAS-1.4.6/BAS/src/sampleworep_new.c | 128 +++++++---- BAS-1.4.6/BAS/vignettes/BAS-vignette.Rmd | 18 - 135 files changed, 3086 insertions(+), 1277 deletions(-)
Title: Fast and Robust Surrogate Variable Analysis
Description: Introduces a fast and efficient Surrogate Variable Analysis algorithm that captures variation of unknown sources (batch effects) for high-dimensional data sets. The algorithm is built on the 'irwsva.build' function of the 'sva' package and proposes a revision on it that achieves more than 10 times faster running time while trading no accuracy loss in return.
Author: Jun Chen <Chen.Jun2@mayo.edu>, Ehsan Behnam <behnamgh@usc.edu>
Maintainer: Jun Chen <Chen.Jun2@mayo.edu>
Diff between SmartSVA versions 0.1.1 dated 2016-11-23 and 0.1.2 dated 2017-05-26
SmartSVA-0.1.1/SmartSVA/man/smartsva.Rd |only SmartSVA-0.1.2/SmartSVA/DESCRIPTION | 10 ++-- SmartSVA-0.1.2/SmartSVA/MD5 | 10 ++-- SmartSVA-0.1.2/SmartSVA/NAMESPACE | 4 - SmartSVA-0.1.2/SmartSVA/R/SmartSVA.R | 9 ++- SmartSVA-0.1.2/SmartSVA/man/smartsva.cpp.Rd | 46 +++++++++++++++++--- SmartSVA-0.1.2/SmartSVA/src/registerDynamicSymbol.c |only 7 files changed, 57 insertions(+), 22 deletions(-)
Title: Tic-Tac-Toe Game
Description: Implements tic-tac-toe game to play on console, either with human or AI players.
Various levels of AI players are trained through the Q-learning algorithm.
Author: Kota Mori [aut, cre]
Maintainer: Kota Mori <kmori05@gmail.com>
Diff between tictactoe versions 0.2.0 dated 2016-12-28 and 0.2.2 dated 2017-05-26
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- R/ttt_qlearn.R | 8 ++++---- R/xhash.R | 2 +- README.md | 18 +++++++++++------- man/equivalent_states.Rd | 1 - man/hash-ops.Rd | 5 ++--- man/ttt.Rd | 1 - man/ttt_ai.Rd | 1 - man/ttt_game.Rd | 1 - man/ttt_human.Rd | 1 - man/ttt_qlearn.Rd | 9 ++++----- man/ttt_simulate.Rd | 1 - man/vectorized-methods.Rd | 9 ++++----- man/xhash.Rd | 3 +-- tests/testthat/test-xhash.R | 2 +- 16 files changed, 48 insertions(+), 54 deletions(-)
Title: Box-Cox Power Transformation
Description: Performs Box-Cox power transformation for different purposes, graphical approaches, assess the success of the transformation via tests and plots, computes mean and confidence interval for back transformed data.
Author: Osman Dag [aut, cre], Ozgur Asar [aut], Ozlem Ilk [aut]
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>
Diff between AID versions 1.9 dated 2017-05-19 and 2.0 dated 2017-05-26
DESCRIPTION | 10 +++--- MD5 | 20 ++++++------ R/boxcoxfr.R | 75 ++++++++++++++++++++++++++---------------------- R/boxcoxnc.R | 67 +++++++++++++++++++++++------------------- R/confInt.R | 7 +++- R/confInt.boxcoxfr.R | 6 +-- man/AID.Rd | 2 - man/boxcoxfr.Rd | 25 +++++++++++++--- man/boxcoxnc.Rd | 31 ++++++++++++++++--- man/confInt.Rd | 2 - man/confInt.boxcoxfr.Rd | 2 - 11 files changed, 149 insertions(+), 98 deletions(-)
Title: Plot Linkage Group Maps with Quantitative Trait Loci
Description: Produces high resolution, publication ready linkage maps
and quantitative trait loci maps. Input can be output from 'R/qtl',
simple text or comma delimited files. Output is currently
a portable document file.
Author: Lisa Ouellette [aut, cre]
Maintainer: Lisa Ouellette <louellet@uncc.edu>
Diff between LinkageMapView versions 2.0.0 dated 2017-04-28 and 2.1.0 dated 2017-05-26
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/data.R | 2 +- R/lmv.linkage.plot.R | 27 +++++++++++++++++---------- R/lmvdencolor.R | 9 ++++++++- R/reqdim.R | 2 +- inst/doc/LinkageMapView.html | 32 ++++++++++++++++---------------- man/lmv.linkage.plot.Rd | 5 ++--- man/oat.Rd | 2 +- 9 files changed, 57 insertions(+), 44 deletions(-)
More information about LinkageMapView at CRAN
Permanent link
Title: Read Epanet Files into R
Description: Reads water network simulation data in 'Epanet' text-based
'.inp' and '.rpt' formats into R. Also reads results from 'Epanet-msx'.
Provides basic summary information and plots. The README file has a
quick introduction. See <http://www2.epa.gov/water-research/epanet>
for more information on the 'Epanet' software for modeling
hydraulic and water quality behavior of water piping systems.
Author: Bradley J. Eck
Maintainer: Bradley Eck <brad@bradeck.net>
Diff between epanetReader versions 0.4.0 dated 2016-08-10 and 0.5.1 dated 2017-05-26
DESCRIPTION | 22 - LICENSE | 2 MD5 | 120 ++++++--- NEWS | 8 R/epanet.inp-s3.r | 48 ++- R/epanet.rpt-s3.r | 50 ++-- R/epanetmsx.rpt-s3.r | 4 R/expandedLinkTable-s3.r | 5 R/inpFuncs.r | 23 + R/plotSparklineTable.r | 4 README.md | 458 +++++++++++++++++-------------------- man/Net1.Rd | 1 man/Net1rpt.Rd | 1 man/binBreaker.Rd | 1 man/epanetDefaultOptions.Rd | 1 man/epanetReader.Rd | 1 man/expandedLinkTable.Rd | 1 man/plot.epanet.inp.Rd | 10 man/plot.epanet.rpt.Rd | 7 man/plot.epanetmsx.rpt.Rd | 1 man/plot.expandedLinkTable.Rd | 5 man/plot.sparkline.Rd | 1 man/plot.sparklineTable.Rd | 1 man/plotElementsLegend.Rd | 1 man/plotInpLinks.Rd | 7 man/plotInpNodes.Rd | 3 man/plotSparklineTable.Rd | 5 man/print.summary.epanet.rpt.Rd | 1 man/print.summary.epanetmsx.rpt.Rd | 1 man/read.inp.Rd | 5 man/read.msxrpt.Rd | 7 man/read.rpt.Rd | 7 man/read_lines_wrapper.Rd | 1 man/sparkline.Rd | 1 man/sparklineTable.Rd | 1 man/summary.epanet.inp.Rd | 1 man/summary.epanet.rpt.Rd | 1 man/summary.epanetmsx.rpt.Rd | 1 man/write.inp.Rd | 1 tests |only 40 files changed, 442 insertions(+), 377 deletions(-)
Title: Combinatorics Iterators
Description: Provides iterators for combinations, permutations, subsets, and
Cartesian product, which allow one to go through all elements without creating a
huge set of all possible values.
Author: Kota Mori [aut, cre]
Maintainer: Kota Mori <kmori05@gmail.com>
Diff between combiter versions 0.1.0 dated 2016-09-26 and 1.0.2 dated 2017-05-26
combiter-0.1.0/combiter/R/combinatiter-class.R |only combiter-0.1.0/combiter/R/combiter.R |only combiter-0.1.0/combiter/R/iterators.R |only combiter-0.1.0/combiter/man/combinatiter.Rd |only combiter-1.0.2/combiter/DESCRIPTION | 19 combiter-1.0.2/combiter/MD5 | 46 +- combiter-1.0.2/combiter/NAMESPACE | 18 combiter-1.0.2/combiter/NEWS |only combiter-1.0.2/combiter/R/RcppExports.R | 16 combiter-1.0.2/combiter/R/icartes.R |only combiter-1.0.2/combiter/R/icomb.R |only combiter-1.0.2/combiter/R/iperm.R |only combiter-1.0.2/combiter/R/isubset.R |only combiter-1.0.2/combiter/R/recursiveiter.R |only combiter-1.0.2/combiter/R/s3generic.R |only combiter-1.0.2/combiter/R/utils.R |only combiter-1.0.2/combiter/README.md | 84 ---- combiter-1.0.2/combiter/man/getFirst.Rd |only combiter-1.0.2/combiter/man/getLast.Rd |only combiter-1.0.2/combiter/man/hasPrev.Rd | 5 combiter-1.0.2/combiter/man/icartes.Rd |only combiter-1.0.2/combiter/man/icomb.Rd | 16 combiter-1.0.2/combiter/man/iperm.Rd | 23 - combiter-1.0.2/combiter/man/isubset.Rd | 16 combiter-1.0.2/combiter/man/prevElem.Rd | 5 combiter-1.0.2/combiter/man/recursiveiter.Rd |only combiter-1.0.2/combiter/man/reexports.Rd | 7 combiter-1.0.2/combiter/src/RcppExports.cpp | 38 + combiter-1.0.2/combiter/src/cartes.cpp |only combiter-1.0.2/combiter/src/combiter_init.c |only combiter-1.0.2/combiter/src/perm.cpp | 353 ++++++++++++++---- combiter-1.0.2/combiter/tests/testthat/test-foreach.R |only combiter-1.0.2/combiter/tests/testthat/test-icartes.R |only combiter-1.0.2/combiter/tests/testthat/test-iperm.R | 117 +++-- 34 files changed, 515 insertions(+), 248 deletions(-)
Title: Cubature over Polygonal Domains
Description: The following methods for cubature (numerical integration)
over polygonal domains are currently implemented:
the two-dimensional midpoint rule as a simple wrapper around
as.im.function() from package 'spatstat' (Baddeley and Turner, 2005),
the product Gauss cubature by Sommariva and Vianello (2007),
an adaptive cubature for isotropic functions via line integrate()
along the boundary (Meyer and Held, 2014),
and quasi-exact methods specific to the integration of the
bivariate Gaussian density over polygonal and circular domains
(based on formulae from the Abramowitz and Stegun (1972) handbook).
For cubature over simple hypercubes, the packages 'cubature' and
'R2Cuba' are more appropriate.
Author: Sebastian Meyer [aut, cre, trl],
Leonhard Held [ths],
Michael Hoehle [ths]
Maintainer: Sebastian Meyer <seb.meyer@fau.de>
Diff between polyCub versions 0.5-2 dated 2015-02-26 and 0.6.0 dated 2017-05-26
DESCRIPTION | 55 +++++++++++++++-------------- MD5 | 70 +++++++++++++++++++++----------------- NAMESPACE | 5 +- R/polyCub.SV.R | 13 +++---- R/polyCub.exact.Gauss.R | 19 +++++----- R/polyCub.iso.R | 31 ++++++++++------ README.md |only inst/NEWS.Rd | 19 +++++++++- inst/include |only man/checkintrfr.Rd | 3 - man/circleCub.Gauss.Rd | 5 +- man/coerce-gpc-methods.Rd | 15 +++----- man/coerce-sp-methods.Rd | 15 +++----- man/dotprod.Rd | 5 +- man/gpclibPermit.Rd | 3 - man/isClosed.Rd | 3 - man/isScalar.Rd | 3 - man/makegrid.Rd | 3 - man/plot_polyregion.Rd | 3 - man/plotpolyf.Rd | 7 +-- man/polyCub-package.Rd | 5 +- man/polyCub.Rd | 10 ++--- man/polyCub.SV.Rd | 30 +++++++--------- man/polyCub.exact.Gauss.Rd | 26 +++++++------- man/polyCub.iso.Rd | 37 +++++++++++--------- man/polyCub.midpoint.Rd | 9 ++-- man/polygauss.Rd | 9 ++-- man/vecnorm.Rd | 3 - man/xylist.Rd | 11 ++--- src/init.c |only src/polyCub.SV.c | 30 ++++++++-------- src/polyCub.SV.h |only src/polyCub.iso.c |only src/polyCub.iso.h |only tests/test-all.R | 2 - tests/testthat/polyiso_powerlaw.c |only tests/testthat/test-NWGL.R | 3 - tests/testthat/test-polyCub.R | 14 +++---- tests/testthat/test-polyiso.R |only tests/testthat/test-regression.R | 4 +- 40 files changed, 249 insertions(+), 221 deletions(-)
Title: Moment and Inverse Moment Bayes Factors
Description: Model selection and parameter estimation based on non-local and Zellner priors. Bayes factors, marginal densities and variable selection in regression setups. Routines to sample, evaluate prior densities, distribution functions and quantiles are included.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck
Maintainer: David Rossell <rosselldavid@gmail.com>
Diff between mombf versions 1.9.4 dated 2017-03-08 and 1.9.5 dated 2017-05-26
ChangeLog | 6 ++ DESCRIPTION | 8 +-- MD5 | 16 +++---- R/modelSelection.R | 36 +++++++++++++---- inst/doc/mombf.pdf |binary man/modelSelection.Rd | 10 +++- src/do_mombf.h | 4 - src/modelSel.cpp | 101 ++++++++++++++++++++++++++------------------------ src/modelSel.h | 4 - 9 files changed, 110 insertions(+), 75 deletions(-)
Title: Best Subset Selection for Sparse Generalized Linear Model and
Cox Model
Description: An implementation of best subset selection in generalized linear model and Cox proportional hazard model via the primal dual active set algorithm. The algorithm formulates coefficient parameters and residuals as primal and dual variables and utilizes efficient active set selection strategies based on the complementarity of the primal and dual variables.
Author: Canhong Wen, Aijun Zhang, Shijie Quan, Xueqin Wang
Maintainer: Canhong Wen <wencanhong@gmail.com>
Diff between BeSS versions 1.0.0 dated 2017-04-20 and 1.0.1 dated 2017-05-26
DESCRIPTION | 6 MD5 | 36 - R/RcppExports.R | 42 -- R/bess.R | 974 ++++++++++++++++++++++++++++----------------------- R/bess.cox.R | 5 R/bess.glm.R | 8 R/bess.lm.R | 8 R/bess.one.R | 158 ++++---- R/coef.bess.R | 17 R/plot.bess.R | 6 R/predict.bess.R | 17 R/summary.bess.R | 4 man/bess-internal.Rd | 3 man/bess.Rd | 8 man/bess.one.Rd | 6 man/coef.bess.Rd | 3 man/predict.bess.Rd | 3 src/RcppExports.cpp | 50 -- src/bess.cpp | 210 ---------- 19 files changed, 706 insertions(+), 858 deletions(-)
Title: Data Class and Tools for Handling Spatial-Temporal Data
Description: Data class for increased interoperability working with spatial-
temporal data together with corresponding functions and methods (conversions,
basic calculations and basic data manipulation). The class distinguishes
between spatial, temporal and other dimensions to facilitate the development
and interoperability of tools build for it. Additional features are name-based
addressing of data and internal consistency checks (e.g. checking for the right
data order in calculations).
Author: Jan Philipp Dietrich,
Benjamin Bodirsky,
Misko Stevanovic,
Lavinia Baumstark,
Christoph Bertram,
Markus Bonsch,
Anastasis Giannousakis,
Florian Humpenoeder,
David Klein,
Ina Neher,
Michaja Pehl,
Anselm Schultes,
Xiaoxi Wang
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between magclass versions 3.85 dated 2016-07-21 and 4.39 dated 2017-05-26
magclass-3.85/magclass/R/as.quitte.R |only magclass-3.85/magclass/man/as.dataframe-methods.Rd |only magclass-3.85/magclass/man/calibrate_it.rd |only magclass-3.85/magclass/man/convergence.rd |only magclass-3.85/magclass/man/head-methods.Rd |only magclass-3.85/magclass/man/lin.convergence.rd |only magclass-3.85/magclass/man/magclassdata.rd |only magclass-3.85/magclass/man/magpieResolution.rd |only magclass-3.85/magclass/man/make.ISOyear.Rd |only magclass-3.85/magclass/man/new.magpie.rd |only magclass-3.85/magclass/man/population_magpie.rd |only magclass-3.85/magclass/man/print-methods.Rd |only magclass-3.85/magclass/man/quitte-class.Rd |only magclass-3.85/magclass/man/time_interpolate.rd |only magclass-4.39/magclass/DESCRIPTION | 47 +- magclass-4.39/magclass/MD5 | 292 ++++++++-------- magclass-4.39/magclass/NAMESPACE | 207 +++++------ magclass-4.39/magclass/R/add_columns.R | 67 ++- magclass-4.39/magclass/R/add_dimension.R | 75 ++-- magclass-4.39/magclass/R/as.array.R | 32 + magclass-4.39/magclass/R/as.data.frame.R | 155 +++++--- magclass-4.39/magclass/R/as.magpie.R | 121 ++++-- magclass-4.39/magclass/R/calibrate_it.R | 29 + magclass-4.39/magclass/R/clean_magpie.R | 33 + magclass-4.39/magclass/R/colMeans-method.R | 24 - magclass-4.39/magclass/R/colSums-method.R | 46 +- magclass-4.39/magclass/R/collapseNames.R | 50 ++ magclass-4.39/magclass/R/complete_magpie.R | 59 ++- magclass-4.39/magclass/R/convergence.R | 173 +++++---- magclass-4.39/magclass/R/convert.report.R | 32 + magclass-4.39/magclass/R/copy.attributes.R | 57 ++- magclass-4.39/magclass/R/copy.magpie.R | 29 + magclass-4.39/magclass/R/dimCode.R | 59 ++- magclass-4.39/magclass/R/dimOrder.R |only magclass-4.39/magclass/R/dimSums.R | 229 +++++++----- magclass-4.39/magclass/R/duplicates_check.R | 12 magclass-4.39/magclass/R/escapeRegex.R | 12 magclass-4.39/magclass/R/fulldim.R | 86 ++-- magclass-4.39/magclass/R/getCPR.R | 62 ++- magclass-4.39/magclass/R/getCells.R | 51 ++ magclass-4.39/magclass/R/getComment.R | 43 +- magclass-4.39/magclass/R/getDim.R | 32 + magclass-4.39/magclass/R/getNames.R | 217 +++++++----- magclass-4.39/magclass/R/getRegionList.R | 22 + magclass-4.39/magclass/R/getRegions.R | 69 ++- magclass-4.39/magclass/R/getSets.R | 33 + magclass-4.39/magclass/R/getYears.R | 83 +++- magclass-4.39/magclass/R/head.magpie.R | 37 +- magclass-4.39/magclass/R/is.magpie.R | 3 magclass-4.39/magclass/R/is.quitte.R | 3 magclass-4.39/magclass/R/is.spatial.R | 13 magclass-4.39/magclass/R/is.temporal.R | 22 + magclass-4.39/magclass/R/isYear.R | 18 magclass-4.39/magclass/R/lin.convergence.R | 43 ++ magclass-4.39/magclass/R/lowpass.R | 23 + magclass-4.39/magclass/R/magclass-package.R |only magclass-4.39/magclass/R/magpie-class.R | 91 ++++- magclass-4.39/magclass/R/magpieComp.R | 73 ++-- magclass-4.39/magclass/R/magpieResolution.R | 15 magclass-4.39/magclass/R/magpie_expand.R | 361 ++++++++++---------- magclass-4.39/magclass/R/magpiesort.R | 47 +- magclass-4.39/magclass/R/magpply.R |only magclass-4.39/magclass/R/make.ISOyear.R | 57 ++- magclass-4.39/magclass/R/mbind.R | 140 ++++--- magclass-4.39/magclass/R/mbind2.R | 91 ++--- magclass-4.39/magclass/R/mcalc.R | 71 ++- magclass-4.39/magclass/R/mselect.R | 137 ++++--- magclass-4.39/magclass/R/ncells.R | 22 + magclass-4.39/magclass/R/ndata.R | 14 magclass-4.39/magclass/R/new.magpie.R | 67 ++- magclass-4.39/magclass/R/nregions.R | 6 magclass-4.39/magclass/R/nyears.R | 8 magclass-4.39/magclass/R/old_dim_convention.R | 43 +- magclass-4.39/magclass/R/onLoad.R | 16 magclass-4.39/magclass/R/ops-method.R | 26 - magclass-4.39/magclass/R/place_x_in_y.R | 77 ++-- magclass-4.39/magclass/R/pmin-method.R | 14 magclass-4.39/magclass/R/population_magpie.R |only magclass-4.39/magclass/R/print.magpie.R | 26 + magclass-4.39/magclass/R/read.magpie.R | 121 ++++++ magclass-4.39/magclass/R/read.report.R | 27 + magclass-4.39/magclass/R/remind2magpie.R | 17 magclass-4.39/magclass/R/round-method.R | 33 + magclass-4.39/magclass/R/rowMeans-method.R | 16 magclass-4.39/magclass/R/rowSums-method.R | 37 +- magclass-4.39/magclass/R/setCells.R | 3 magclass-4.39/magclass/R/setComment.R | 9 magclass-4.39/magclass/R/setNames_method.R | 23 + magclass-4.39/magclass/R/setYears.R | 3 magclass-4.39/magclass/R/sysdata.R |only magclass-4.39/magclass/R/sysdata.rda |binary magclass-4.39/magclass/R/tail.magpie.R | 12 magclass-4.39/magclass/R/tidy2magpie.R | 139 +++---- magclass-4.39/magclass/R/time_interpolate.R | 165 +++++---- magclass-4.39/magclass/R/unwrap.R | 43 +- magclass-4.39/magclass/R/where.R |only magclass-4.39/magclass/R/wrap.R | 20 + magclass-4.39/magclass/R/write.magpie.R | 101 +++++ magclass-4.39/magclass/R/write.report.R | 270 +++++++++----- magclass-4.39/magclass/R/write.report2.R |only magclass-4.39/magclass/R/write.reportProject.R | 106 ++++- magclass-4.39/magclass/man/add_columns.Rd | 56 +-- magclass-4.39/magclass/man/add_dimension.Rd | 60 ++- magclass-4.39/magclass/man/as.array-methods.Rd | 49 +- magclass-4.39/magclass/man/as.data.frame-methods.Rd |only magclass-4.39/magclass/man/calibrate_it.Rd |only magclass-4.39/magclass/man/clean_magpie.Rd | 54 ++ magclass-4.39/magclass/man/colSums-methods.Rd | 66 ++- magclass-4.39/magclass/man/collapseNames.Rd | 45 ++ magclass-4.39/magclass/man/complete_magpie.Rd | 57 +-- magclass-4.39/magclass/man/convergence.Rd |only magclass-4.39/magclass/man/convert.report.Rd | 71 ++- magclass-4.39/magclass/man/copy.attributes.Rd | 91 +++-- magclass-4.39/magclass/man/copy.magpie.Rd | 46 +- magclass-4.39/magclass/man/dimCode.Rd | 57 ++- magclass-4.39/magclass/man/dimOrder.Rd |only magclass-4.39/magclass/man/dimSums.Rd | 77 ++-- magclass-4.39/magclass/man/escapeRegex.Rd | 30 + magclass-4.39/magclass/man/fulldim.Rd | 59 +-- magclass-4.39/magclass/man/getCPR.Rd | 30 + magclass-4.39/magclass/man/getCells.Rd | 77 +++- magclass-4.39/magclass/man/getComment.Rd | 80 ++-- magclass-4.39/magclass/man/getDim.Rd | 48 +- magclass-4.39/magclass/man/getNames.Rd | 104 +++-- magclass-4.39/magclass/man/getRegionList.Rd | 39 +- magclass-4.39/magclass/man/getRegions.Rd | 42 +- magclass-4.39/magclass/man/getSets.Rd | 80 +++- magclass-4.39/magclass/man/getYears.Rd | 84 +++- magclass-4.39/magclass/man/head.magpie.Rd |only magclass-4.39/magclass/man/is.temporal.Rd | 26 - magclass-4.39/magclass/man/isYear.Rd | 29 + magclass-4.39/magclass/man/lin.convergence.Rd |only magclass-4.39/magclass/man/lowpass.Rd | 35 + magclass-4.39/magclass/man/magclass-package.Rd | 55 +-- magclass-4.39/magclass/man/magclassdata.Rd |only magclass-4.39/magclass/man/magpie-class.Rd | 198 +++++----- magclass-4.39/magclass/man/magpieComp.Rd | 50 +- magclass-4.39/magclass/man/magpieResolution.Rd |only magclass-4.39/magclass/man/magpie_expand.Rd | 50 +- magclass-4.39/magclass/man/magpiesort.Rd | 48 +- magclass-4.39/magclass/man/magpply.Rd |only magclass-4.39/magclass/man/mbind.Rd | 80 ++-- magclass-4.39/magclass/man/mcalc.Rd | 72 ++- magclass-4.39/magclass/man/mselect.Rd | 76 ++-- magclass-4.39/magclass/man/ncells.Rd | 87 +++- magclass-4.39/magclass/man/new.magpie.Rd |only magclass-4.39/magclass/man/old_dim_convention.Rd | 45 +- magclass-4.39/magclass/man/place_x_in_y.Rd | 53 +- magclass-4.39/magclass/man/population_magpie.Rd |only magclass-4.39/magclass/man/print.magpie.Rd |only magclass-4.39/magclass/man/read.magpie.Rd | 177 ++++++--- magclass-4.39/magclass/man/read.report.Rd | 36 + magclass-4.39/magclass/man/remind2magpie.Rd | 29 + magclass-4.39/magclass/man/round-methods.Rd | 41 +- magclass-4.39/magclass/man/rowSums-methods.Rd | 38 +- magclass-4.39/magclass/man/setNames-methods.Rd |only magclass-4.39/magclass/man/time_interpolate.Rd |only magclass-4.39/magclass/man/unwrap.Rd | 56 +-- magclass-4.39/magclass/man/where.Rd |only magclass-4.39/magclass/man/wrap.Rd | 52 +- magclass-4.39/magclass/man/write.magpie.Rd | 176 ++++++--- magclass-4.39/magclass/man/write.report.Rd | 85 ++-- magclass-4.39/magclass/man/write.report2.Rd |only magclass-4.39/magclass/man/write.reportProject.Rd | 59 +-- magclass-4.39/magclass/tests |only 165 files changed, 5500 insertions(+), 2802 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible framework for for the management, processing, and
quantitative analysis of textual data in R.
Author: Kenneth Benoit [aut, cre, cph],
Kohei Watanabe [ctb],
Paul Nulty [ctb],
Adam Obeng [ctb],
Haiyan Wang [ctb],
Benjamin Lauderdale [ctb],
Will Lowe [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.9.9-50 dated 2017-04-20 and 0.9.9-65 dated 2017-05-26
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Title: Optimum Contribution Selection and Population Genetics
Description: A framework for the optimization of breeding programs via optimum contribution selection and mate allocation. An easy to use set of function for computation of optimum contributions of selection candidates, and of the population genetic parameters to be optimized. These parameters can be estimated using pedigree or genotype information, and include kinships, kinships at native haplotype segments, and breed composition of crossbred individuals. They are suitable for managing genetic diversity, removing introgressed genetic material, and accelerating genetic gain. Additionally, functions are provided for computing genetic contributions from ancestors, inbreeding coefficients, the native effective size, the native genome equivalent, pedigree completeness, and for preparing and plotting pedigrees.
Author: Robin Wellmann
Maintainer: Robin Wellmann <r.wellmann@uni-hohenheim.de>
Diff between optiSel versions 0.9 dated 2017-05-24 and 0.9.1 dated 2017-05-26
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 4 +++- R/matings.R | 46 ++++++++++++++++++++++++++++++---------------- build/partial.rdb |binary man/matings.Rd | 22 +++++++++++++--------- 6 files changed, 56 insertions(+), 36 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data
processing, see <http://spark.apache.org>. This package supports connecting to
local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end,
and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut, cre],
Kevin Ushey [aut],
JJ Allaire [aut],
RStudio [cph],
The Apache Software Foundation [aut, cph]
Maintainer: Javier Luraschi <javier@rstudio.com>
Diff between sparklyr versions 0.5.4 dated 2017-04-25 and 0.5.5 dated 2017-05-26
DESCRIPTION | 9 +- MD5 | 24 ++++-- NAMESPACE | 11 ++- R/connection_shinyapp.R |only R/connection_spark.R | 14 ++- R/connection_viewer.R | 138 +++++++++++++++++++++++++++++++++------ R/databricks_connection.R |only R/livy_connection.R | 15 +++- inst/icons |only inst/rstudio |only java/backend.scala | 4 - man/connection_spark_shinyapp.Rd |only man/spark-connections.Rd | 4 - 13 files changed, 176 insertions(+), 43 deletions(-)
Title: Fault Tolerant Simple Network of Workstations
Description: Extension of the snow package supporting fault tolerant and reproducible applications, as well as supporting easy-to-use parallel programming - only one function is needed.
Author: Hana Sevcikova, A. J. Rossini
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between snowFT versions 1.4-0 dated 2015-06-25 and 1.5-0 dated 2017-05-26
ChangeLog | 8 ++++++++ DESCRIPTION | 10 ++++++---- MD5 | 16 ++++++++-------- NAMESPACE | 10 +++++++--- R/snowFT.R | 12 ++++++++++-- R/sock.R | 3 ++- man/snowFT-package.Rd | 4 ++-- man/snowFT-rand.Rd | 16 +++++++++------- man/snowFT-startstop.Rd | 4 ++-- 9 files changed, 54 insertions(+), 29 deletions(-)
Title: Diagnostics to Assess the Effects of Text Preprocessing
Decisions
Description: Functions to assess the effects of different text preprocessing decisions on the inferences drawn from the resulting document-term matrices they generate.
Author: Matthew J. Denny <mdenny@psu.edu>, Arthur Spirling
<as9934@nyu.edu>,
Maintainer: Matthew J. Denny <mdenny@psu.edu>
Diff between preText versions 0.4.4 dated 2016-10-08 and 0.5.0 dated 2017-05-26
DESCRIPTION | 14 - MD5 | 78 ++++----- NAMESPACE | 1 R/Package_Documentation.R | 3 R/calculate_prediction_errors.R | 2 R/factorial_preprocessing.R | 208 +++++++++++++++++++++----- R/optimal_k_comparison.R | 10 - R/preprocessing_choice_regression.R | 26 ++- R/scaling_comparison.R | 2 R/topic_key_term_plot.R | 21 +- R/wordfish_comparison.R | 7 R/wordfish_rank_plot.R | 31 ++- R/zzz.R | 2 README.md | 10 - build/vignette.rds |binary data/UK_Manifestos.rda |binary inst/doc/getting_started_with_preText.R | 8 - inst/doc/getting_started_with_preText.Rmd | 27 +-- inst/doc/getting_started_with_preText.html | 96 ++++++------ man/UK_Manifestos.Rd | 1 man/calculate_prediction_errors.Rd | 3 man/dfm_scaling_test.Rd | 1 man/document_position_plots.Rd | 1 man/factorial_preprocessing.Rd | 3 man/mantel_comparison.Rd | 1 man/mantel_comparison_to_base.Rd | 1 man/optimal_k_comparison.Rd | 11 - man/preText.Rd | 3 man/preText_score_plot.Rd | 1 man/preText_test.Rd | 1 man/preprocessing_choice_regression.Rd | 1 man/regression_coefficient_plot.Rd | 1 man/remove_infrequent_terms.Rd | 1 man/scaling_comparison.Rd | 1 man/topic_key_term_plot.Rd | 1 man/topic_novelty_score.Rd | 1 man/wordfish_comparison.Rd | 7 man/wordfish_rank_plot.Rd | 5 tests/testthat/test_factorial_preprocessing.R | 8 - vignettes/getting_started_with_preText.Rmd | 27 +-- 40 files changed, 388 insertions(+), 238 deletions(-)
Title: Local Density-Based Outlier Detection
Description: Flexible procedures to compute local density-based outlier scores for ranking outliers.
Both exact and approximate nearest neighbor search can be implemented, while also accommodating
multiple neighborhood sizes and four different local density-based methods. It allows for
referencing a random subsample of the input data or a user specified reference data set
to compute outlier scores against, so both unsupervised and semi-supervised outlier
detection can be implemented.
Author: Kristopher Williams
Maintainer: Kristopher Williams <kristopher.williams83@gmail.com>
Diff between ldbod versions 0.1.1 dated 2016-12-22 and 0.1.2 dated 2017-05-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/ldbod.R | 4 ++-- README.md | 6 +++--- man/ldbod.Rd | 3 +-- man/ldbod.ref.Rd | 1 - 6 files changed, 15 insertions(+), 17 deletions(-)
Title: Knot Diagrams using Bezier Curves
Description: Makes nice pictures of knots using Bezier curves and
numerical optimization.
Author: Robin K. S. Hankin
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
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Title: A Modified Random Survival Forest Algorithm
Description: Implements a modification to the Random Survival Forests algorithm for obtaining variable importance in high dimensional datasets. The proposed algorithm is appropriate for settings in which a silent event is observed through sequentially administered, error-prone self-reports or laboratory based diagnostic tests. The modified algorithm incorporates a formal likelihood framework that accommodates sequentially administered, error-prone self-reports or laboratory based diagnostic tests. The original Random Survival Forests algorithm is modified by the introduction of a new splitting criterion based on a likelihood ratio test statistic.
Author: Hui Xu and Raji Balasubramanian
Maintainer: Hui Xu <huix@schoolph.umass.edu>
Diff between icRSF versions 1.0 dated 2016-01-20 and 1.1 dated 2017-05-26
icRSF-1.0/icRSF/man/Xmat.Rd |only icRSF-1.0/icRSF/man/icRSF_1.0-package.Rd |only icRSF-1.0/icRSF/man/pheno.Rd |only icRSF-1.1/icRSF/DESCRIPTION | 12 - icRSF-1.1/icRSF/MD5 | 23 + icRSF-1.1/icRSF/R/RcppExports.R | 2 icRSF-1.1/icRSF/R/icrsf.r | 371 ++++++++++++------------------- icRSF-1.1/icRSF/R/simout.r | 2 icRSF-1.1/icRSF/man/Xmat.rd |only icRSF-1.1/icRSF/man/icRSF1.1-package.rd |only icRSF-1.1/icRSF/man/icrsf.Rd | 23 + icRSF-1.1/icRSF/man/pheno.rd |only icRSF-1.1/icRSF/man/simout.Rd | 1 icRSF-1.1/icRSF/src/RcppExports.cpp | 154 ++++++------ icRSF-1.1/icRSF/src/init.c |only icRSF-1.1/icRSF/src/loglikhood2.cpp | 6 16 files changed, 264 insertions(+), 330 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multiprocess)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, on in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implements additional backends for
processing futures via compute cluster schedulers etc.
Because of its unified API, there is no need to modify code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.4.0 dated 2017-03-13 and 1.5.0 dated 2017-05-26
future-1.4.0/future/R/uniprocess.R |only future-1.4.0/future/tests/eager.R |only future-1.4.0/future/tests/future_lapply,tricky_globals.R |only future-1.5.0/future/DESCRIPTION | 8 future-1.5.0/future/MD5 | 294 +++--- future-1.5.0/future/NAMESPACE | 2 future-1.5.0/future/NEWS | 69 + future-1.5.0/future/R/ClusterFuture-class.R | 79 + future-1.5.0/future/R/ClusterRegistry.R | 6 future-1.5.0/future/R/ConstantFuture-class.R | 6 future-1.5.0/future/R/DEPRECATED.R |only future-1.5.0/future/R/Future-class.R | 123 +- future-1.5.0/future/R/FutureError-class.R | 16 future-1.5.0/future/R/FutureGlobals-class.R | 29 future-1.5.0/future/R/FutureRegistry.R | 22 future-1.5.0/future/R/MulticoreFuture-class.R | 42 future-1.5.0/future/R/MultiprocessFuture-class.R | 6 future-1.5.0/future/R/MultisessionFuture-class.R | 10 future-1.5.0/future/R/UniprocessFuture-class.R | 73 - future-1.5.0/future/R/availableCores.R | 43 future-1.5.0/future/R/availableWorkers.R | 10 future-1.5.0/future/R/backtrace.R | 7 future-1.5.0/future/R/cluster.R | 5 future-1.5.0/future/R/constant.R | 2 future-1.5.0/future/R/future.R | 10 future-1.5.0/future/R/futureAssign.R | 16 future-1.5.0/future/R/futureAssign_OP.R | 24 future-1.5.0/future/R/futureCall.R | 6 future-1.5.0/future/R/futureOf.R | 36 future-1.5.0/future/R/future_lapply.R | 57 - future-1.5.0/future/R/futures.R | 4 future-1.5.0/future/R/globals.R | 82 + future-1.5.0/future/R/globals_OP.R | 2 future-1.5.0/future/R/label_OP.R | 2 future-1.5.0/future/R/lazy_OP.R | 2 future-1.5.0/future/R/makeClusterPSOCK.R | 358 ++++++- future-1.5.0/future/R/mandelbrot.R | 94 +- future-1.5.0/future/R/multicore.R | 37 future-1.5.0/future/R/multiprocess.R | 6 future-1.5.0/future/R/multisession.R | 13 future-1.5.0/future/R/nbrOfWorkers.R | 4 future-1.5.0/future/R/options.R | 12 future-1.5.0/future/R/plan_OP.R | 6 future-1.5.0/future/R/remote.R | 10 future-1.5.0/future/R/resolve.R | 132 +- future-1.5.0/future/R/resolved.R | 2 future-1.5.0/future/R/seed_OP.R | 2 future-1.5.0/future/R/sequential.R |only future-1.5.0/future/R/sessionDetails.R | 2 future-1.5.0/future/R/signalEarly.R | 21 future-1.5.0/future/R/tweak.R | 16 future-1.5.0/future/R/tweakExpression.R | 34 future-1.5.0/future/R/tweak_OP.R | 10 future-1.5.0/future/R/utils.R | 142 +-- future-1.5.0/future/R/values.R | 2 future-1.5.0/future/R/whichIndex.R | 22 future-1.5.0/future/R/zzz.R | 74 - future-1.5.0/future/R/zzz.plan.R | 67 - future-1.5.0/future/build/vignette.rds |binary future-1.5.0/future/demo/fibonacci.R | 4 future-1.5.0/future/demo/mandelbrot.R | 41 future-1.5.0/future/inst/doc/future-1-overview.html | 146 +-- future-1.5.0/future/inst/doc/future-3-topologies.html | 30 future-1.5.0/future/inst/doc/future-3-topologies.md.rsp | 30 future-1.5.0/future/inst/doc/future-4-startup.html | 8 future-1.5.0/future/inst/doc/future-4-startup.md.rsp | 10 future-1.5.0/future/inst/vignettes-static/incl/future-1-overview-example3.R | 2 future-1.5.0/future/man/ClusterFuture-class.Rd | 4 future-1.5.0/future/man/UniprocessFuture-class.Rd | 29 future-1.5.0/future/man/availableCores.Rd | 30 future-1.5.0/future/man/availableWorkers.Rd | 6 future-1.5.0/future/man/cluster.Rd | 2 future-1.5.0/future/man/future.Rd | 6 future-1.5.0/future/man/future.options.Rd | 12 future-1.5.0/future/man/futureOf.Rd | 9 future-1.5.0/future/man/getExpression.Rd | 11 future-1.5.0/future/man/makeClusterPSOCK.Rd | 240 +++-- future-1.5.0/future/man/mandelbrot.Rd | 6 future-1.5.0/future/man/nbrOfWorkers.Rd | 4 future-1.5.0/future/man/plan.Rd | 13 future-1.5.0/future/man/remote.Rd | 4 future-1.5.0/future/man/resolve.Rd | 45 future-1.5.0/future/man/sequential.Rd | 20 future-1.5.0/future/man/sessionDetails.Rd | 2 future-1.5.0/future/man/usedCores.Rd | 4 future-1.5.0/future/tests/000.sessionDetails.R | 9 future-1.5.0/future/tests/ClusterRegistry.R | 29 future-1.5.0/future/tests/DEPRECATED.eager.R |only future-1.5.0/future/tests/DEPRECATED.lazy.R | 123 -- future-1.5.0/future/tests/Future-class.R | 29 future-1.5.0/future/tests/FutureError.R | 21 future-1.5.0/future/tests/FutureGlobals.R |only future-1.5.0/future/tests/FutureRegistry.R | 54 - future-1.5.0/future/tests/as.cluster.R | 56 - future-1.5.0/future/tests/availableCores.R | 33 future-1.5.0/future/tests/availableWorkers.R | 51 - future-1.5.0/future/tests/backtrace.R | 20 future-1.5.0/future/tests/cluster.R | 458 +++++----- future-1.5.0/future/tests/constant.R | 4 future-1.5.0/future/tests/demo.R | 14 future-1.5.0/future/tests/deprecated.R | 34 future-1.5.0/future/tests/dotdotdot.R | 22 future-1.5.0/future/tests/early-signaling.R | 153 +-- future-1.5.0/future/tests/future,labels.R | 9 future-1.5.0/future/tests/future.R | 23 future-1.5.0/future/tests/futureAssign.R | 18 future-1.5.0/future/tests/futureAssign_OP.R | 58 - future-1.5.0/future/tests/futureAssign_OP_with_environment.R | 4 future-1.5.0/future/tests/futureAssign_OP_with_listenv.R | 8 future-1.5.0/future/tests/futureCall.R | 12 future-1.5.0/future/tests/futureOf.R | 5 future-1.5.0/future/tests/futureOf_with_environment.R | 38 future-1.5.0/future/tests/futureOf_with_listenv.R | 54 - future-1.5.0/future/tests/future_lapply,RNG.R | 57 - future-1.5.0/future/tests/future_lapply,globals.R |only future-1.5.0/future/tests/future_lapply.R | 153 +-- future-1.5.0/future/tests/futures.R | 18 future-1.5.0/future/tests/globals,NSE.R | 19 future-1.5.0/future/tests/globals,formulas.R | 182 +-- future-1.5.0/future/tests/globals,manual.R | 131 +- future-1.5.0/future/tests/globals,resolve.R | 14 future-1.5.0/future/tests/globals,subassignment.R | 45 future-1.5.0/future/tests/globals,toolarge.R | 16 future-1.5.0/future/tests/globals,tricky.R | 113 +- future-1.5.0/future/tests/globals,tricky_recursive.R | 14 future-1.5.0/future/tests/globalsOf,tweaks.R | 14 future-1.5.0/future/tests/incl/end.R | 4 future-1.5.0/future/tests/incl/start,load-only.R | 34 future-1.5.0/future/tests/invalid-owner.R | 10 future-1.5.0/future/tests/makeClusterPSOCK.R |only future-1.5.0/future/tests/mandelbrot.R | 2 future-1.5.0/future/tests/multicore.R | 42 future-1.5.0/future/tests/multiprocess.R | 32 future-1.5.0/future/tests/multisession.R | 42 future-1.5.0/future/tests/nbrOfWorkers.R | 10 future-1.5.0/future/tests/nested_futures,mc.cores.R | 37 future-1.5.0/future/tests/nested_futures.R | 13 future-1.5.0/future/tests/objectSize.R | 2 future-1.5.0/future/tests/plan.R | 58 - future-1.5.0/future/tests/remote.R | 8 future-1.5.0/future/tests/requestCore.R | 14 future-1.5.0/future/tests/requestNode.R | 11 future-1.5.0/future/tests/resolve.R | 173 +-- future-1.5.0/future/tests/rng.R | 35 future-1.5.0/future/tests/sequential.R |only future-1.5.0/future/tests/startup.R | 120 +- future-1.5.0/future/tests/transparent.R | 8 future-1.5.0/future/tests/tweak.R | 120 +- future-1.5.0/future/tests/utils.R | 68 - future-1.5.0/future/tests/uuid.R | 12 future-1.5.0/future/tests/whichIndex.R | 52 - future-1.5.0/future/vignettes/future-3-topologies.md.rsp | 30 future-1.5.0/future/vignettes/future-4-startup.md.rsp | 10 153 files changed, 3172 insertions(+), 2767 deletions(-)
Title: Data for "Forecasting: Principles and Practice" (2nd Edition)
Description: All data sets required for the examples and exercises
in the book "Forecasting: principles and practice"
by Rob J Hyndman and George Athanasopoulos <http://OTexts.org/fpp2/>.
All packages required to run the examples are also loaded.
Author: Rob Hyndman [aut, cre, cph]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between fpp2 versions 2.0 dated 2017-02-23 and 2.1 dated 2017-05-26
fpp2-2.0/fpp2/man/cafe.Rd |only fpp2-2.0/fpp2/man/qelec.Rd |only fpp2-2.0/fpp2/man/usnetelec.Rd |only fpp2-2.1/fpp2/ChangeLog | 9 +++ fpp2-2.1/fpp2/DESCRIPTION | 16 ++++-- fpp2-2.1/fpp2/MD5 | 88 +++++++++++++++++++------------------ fpp2-2.1/fpp2/NAMESPACE | 11 ++-- fpp2-2.1/fpp2/R |only fpp2-2.1/fpp2/README.md |only fpp2-2.1/fpp2/data/ausbeer.rda |binary fpp2-2.1/fpp2/data/auscafe.rda |binary fpp2-2.1/fpp2/data/mens400.rda |only fpp2-2.1/fpp2/data/qauselec.rda |binary fpp2-2.1/fpp2/data/sunspotarea.rda |binary fpp2-2.1/fpp2/data/uschange.rda |binary fpp2-2.1/fpp2/man/a10.Rd | 42 +++++++++-------- fpp2-2.1/fpp2/man/arrivals.Rd | 19 ++++--- fpp2-2.1/fpp2/man/ausair.Rd | 40 ++++++++-------- fpp2-2.1/fpp2/man/ausbeer.Rd | 41 ++++++++--------- fpp2-2.1/fpp2/man/auscafe.Rd |only fpp2-2.1/fpp2/man/austa.Rd | 38 +++++++-------- fpp2-2.1/fpp2/man/austourists.Rd | 39 ++++++++-------- fpp2-2.1/fpp2/man/calls.Rd | 18 ++++--- fpp2-2.1/fpp2/man/debitcards.Rd | 40 ++++++++-------- fpp2-2.1/fpp2/man/departures.Rd | 42 +++++++++-------- fpp2-2.1/fpp2/man/elecdemand.Rd | 63 +++++++++++++++----------- fpp2-2.1/fpp2/man/elecequip.Rd | 41 ++++++++--------- fpp2-2.1/fpp2/man/elecsales.Rd | 40 ++++++++-------- fpp2-2.1/fpp2/man/euretail.Rd | 41 ++++++++--------- fpp2-2.1/fpp2/man/fpp-package.Rd | 31 ++++++------- fpp2-2.1/fpp2/man/gasoline.Rd | 24 +++++----- fpp2-2.1/fpp2/man/goog.Rd | 23 +++++---- fpp2-2.1/fpp2/man/guinearice.Rd | 38 +++++++-------- fpp2-2.1/fpp2/man/h02.Rd | 42 +++++++++-------- fpp2-2.1/fpp2/man/hyndsight.Rd | 42 +++++++++-------- fpp2-2.1/fpp2/man/insurance.Rd | 40 ++++++++-------- fpp2-2.1/fpp2/man/livestock.Rd | 39 +++++++--------- fpp2-2.1/fpp2/man/marathon.Rd | 18 ++++--- fpp2-2.1/fpp2/man/maxtemp.Rd | 21 ++++---- fpp2-2.1/fpp2/man/melsyd.Rd | 22 +++++---- fpp2-2.1/fpp2/man/mens400.Rd |only fpp2-2.1/fpp2/man/oil.Rd | 39 +++++++--------- fpp2-2.1/fpp2/man/qauselec.Rd |only fpp2-2.1/fpp2/man/qcement.Rd | 19 ++++--- fpp2-2.1/fpp2/man/qgas.Rd | 39 ++++++++-------- fpp2-2.1/fpp2/man/sunspotarea.Rd | 43 ++++++++++-------- fpp2-2.1/fpp2/man/uschange.Rd | 26 +++++----- fpp2-2.1/fpp2/man/usmelec.Rd |only fpp2-2.1/fpp2/man/vn.Rd | 40 ++++++++-------- fpp2-2.1/fpp2/man/wmurders.Rd | 19 ++++--- 50 files changed, 628 insertions(+), 565 deletions(-)
Title: An Implementation of Parsing and Writing Configuration File
(JSON/INI/YAML/TOML)
Description: Implements the JSON, INI, YAML and TOML parser for R setting and writing of configuration file. The functionality of this package is similar to that of package 'config'.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>
Diff between configr versions 0.2.2 dated 2017-04-30 and 0.2.3 dated 2017-05-26
configr-0.2.2/configr/man/eval.config.groups.Rd |only configr-0.2.3/configr/ChangeLog | 11 configr-0.2.3/configr/DESCRIPTION | 8 configr-0.2.3/configr/MD5 | 51 +- configr-0.2.3/configr/NAMESPACE | 1 configr-0.2.3/configr/R/parse.R | 121 +++-- configr-0.2.3/configr/R/read.R | 36 - configr-0.2.3/configr/R/utils.R | 12 configr-0.2.3/configr/README.md | 112 ++++- configr-0.2.3/configr/inst/extdata/config.ini | 25 - configr-0.2.3/configr/inst/extdata/config.json | 37 + configr-0.2.3/configr/inst/extdata/config.other.yaml | 2 configr-0.2.3/configr/inst/extdata/config.toml | 19 configr-0.2.3/configr/inst/extdata/config.yaml | 22 - configr-0.2.3/configr/man/parse.extra.Rd | 12 configr-0.2.3/configr/man/read.config.Rd | 6 configr-0.2.3/configr/tests/testthat.R | 1 configr-0.2.3/configr/tests/testthat/test_a_configtype.R | 85 +--- configr-0.2.3/configr/tests/testthat/test_b_read.R | 165 +++---- configr-0.2.3/configr/tests/testthat/test_c_merge.R | 83 +-- configr-0.2.3/configr/tests/testthat/test_d_write.R | 45 -- configr-0.2.3/configr/tests/testthat/test_e_convert.R | 27 - configr-0.2.3/configr/tests/testthat/test_f_toml.R | 40 + configr-0.2.3/configr/tests/testthat/test_g_parameter.R | 26 - configr-0.2.3/configr/tests/testthat/test_h_show.error.R | 312 +++------------ configr-0.2.3/configr/tests/testthat/test_j_active.R | 14 configr-0.2.3/configr/tests/testthat/test_k_parse.R | 68 ++- 27 files changed, 654 insertions(+), 687 deletions(-)