Title: Plot an Epidemic Curve
Description: Creates simple or stacked epidemic curves for hourly, daily, weekly or monthly incomes data.
Author: Jean Pierre Decorps [aut, cre],
Morgane Vallee [ctb]
Maintainer: Jean Pierre Decorps <jp.decorps@epiconcept.fr>
Diff between EpiCurve versions 1.0-0 dated 2017-03-14 and 1.1-0 dated 2017-06-18
DESCRIPTION | 12 +++--- MD5 | 8 ++-- NAMESPACE | 3 + R/EpiCurve..R | 112 ++++++++++++++++++++++++++++++++++++++++++++++++++++++-- man/EpiCurve.Rd | 7 ++- 5 files changed, 125 insertions(+), 17 deletions(-)
Title: Time Resolved Simulations of Antibody Repertoires
Description: Simulation methods for the evolution of antibody repertoires. The heavy and light chain variable region of both human and C57BL/6 mice can be simulated in a time-dependent fashion. Both single lineages using one set of V-, D-, and J-genes or full repertoires can be simulated. The algorithm begins with an initial V-D-J recombination event, starting the first phylogenetic tree. Upon completion, the main loop of the algorithm begins, with each iteration representing one simulated time step. Various mutation events are possible at each time step, contributing to a diverse final repertoire.
Author: Alexander Yermanos
Maintainer: Alexander Yermanos <ayermano@ethz.ch>
Diff between AbSim versions 0.2.1 dated 2017-04-05 and 0.2.2 dated 2017-06-18
DESCRIPTION | 8 +- MD5 | 30 ++++----- R/data.R | 20 +++--- R/repertoireFastas.R | 27 +++++++- inst/doc/vignette.html | 152 ++++++++++++++++++++++++++---------------------- man/hotspot_df.Rd | 2 man/ighj_hum_df.Rd | 2 man/igkj_hum_df.Rd | 2 man/igkj_mus_df.Rd | 2 man/igkv_hum_df.Rd | 2 man/igkv_mus_df.Rd | 2 man/iglj_hum_df.Rd | 2 man/iglj_mus_df.Rd | 2 man/iglv_hum_df.Rd | 2 man/iglv_mus_df.Rd | 2 man/repertoireFastas.Rd | 11 +-- 16 files changed, 152 insertions(+), 116 deletions(-)
Title: Statistical Toolbox for Radiometric Geochronology
Description: An R implementation of Ken Ludwig's popular Isoplot add-in to Microsoft Excel. Plots U-Pb data on Wetherill and Tera-Wasserburg concordia diagrams. Calculates concordia and discordia ages. Performs linear regression of measurements with correlated errors using the 'York' approach. Generates Kernel Density Estimates (KDEs) and Cumulative Age Distributions (CADs). Produces Multidimensional Scaling (MDS) configurations and Shepard plots of multi-sample detrital datasets using the Kolmogorov-Smirnov distance as a dissimilarity measure. Calculates 40Ar/39Ar ages, isochrons, and age spectra. Computes weighted means accounting for overdispersion. Calculates U-Th-He (single grain and central) ages, logratio plots and ternary diagrams. Processes fission track data using the external detector method and LA-ICP-MS, calculates central ages and plots fission track and other data on radial (a.k.a. 'Galbraith' plots). Constructs Pb-Pb, Re-Os, Sm-Nd, Lu-Hf and Rb-Sr isochrons.
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between IsoplotR versions 0.13 dated 2017-05-25 and 0.14 dated 2017-06-18
DESCRIPTION | 8 ++-- MD5 | 76 ++++++++++++++++++++++++----------------------- NAMESPACE | 7 ++++ R/ArAr.R | 24 ++++---------- R/PD.R | 2 - R/PbPb.R |only R/UPb.R | 4 -- R/age.R | 54 ++++++++++++++++++++------------- R/cad.R | 25 +++++++++++---- R/central.R | 8 ++++ R/concordia.R | 8 +++- R/constants.R | 19 ++++++----- R/documentation.R | 17 +++++++--- R/errorellipse.R | 3 + R/fissiontracks.R | 2 + R/io.R | 65 ++++++++++++++++++++++++++++++---------- R/isochron.R | 39 ++++++++++++++++++++++++ R/kde.R | 28 +++++++++++++---- R/peakfit.R | 18 ++++++++--- R/radialplot.R | 29 +++++++++++++---- R/regression.R | 8 ++++ R/toolbox.R | 84 ++++++++++------------------------------------------ R/weightedmean.R | 26 ++++++++++++---- data/examples.rda |binary inst/PbPb1.csv |only inst/PbPb2.csv |only inst/PbPb3.csv |only man/age.Rd | 45 ++++++++++++++++----------- man/cad.Rd | 23 +++++++++++--- man/central.Rd | 9 +++++ man/concordia.Rd | 10 ++++-- man/ellipse.Rd | 2 - man/examples.Rd | 15 ++++++--- man/isochron.Rd | 6 +++ man/kde.Rd | 20 +++++++++--- man/peakfit.Rd | 12 +++++-- man/radialplot.Rd | 17 +++++++--- man/read.data.Rd | 20 +++++++++--- man/set.zeta.Rd | 4 ++ man/settings.Rd | 19 ++++++----- man/weightedmean.Rd | 17 +++++++--- 41 files changed, 502 insertions(+), 271 deletions(-)
Title: Forecasting for Stationary and Non-Stationary Time Series
Description: Methods to compute linear h-step ahead prediction coefficients based
on localised and iterated Yule-Walker estimates and empirical mean squared
and absolute prediction errors for the resulting predictors. Also, functions
to compute autocovariances for AR(p) processes, to simulate tvARMA(p,q) time
series, and to verify an assumption from Kley et al. (2017),
Preprint <http://personal.lse.ac.uk/kley/forecastSNSTS.pdf>.
Author: Tobias Kley [aut, cre],
Philip Preuss [aut],
Piotr Fryzlewicz [aut]
Maintainer: Tobias Kley <t.kley@lse.ac.uk>
Diff between forecastSNSTS versions 1.1-1 dated 2017-01-20 and 1.2-0 dated 2017-06-18
forecastSNSTS-1.1-1/forecastSNSTS/R/mspe.R |only forecastSNSTS-1.1-1/forecastSNSTS/man/MSPE.Rd |only forecastSNSTS-1.1-1/forecastSNSTS/man/plot.MSPE.Rd |only forecastSNSTS-1.1-1/forecastSNSTS/tests/testthat/test-MSPE.R |only forecastSNSTS-1.2-0/forecastSNSTS/DESCRIPTION | 18 forecastSNSTS-1.2-0/forecastSNSTS/MD5 | 64 - forecastSNSTS-1.2-0/forecastSNSTS/NAMESPACE | 30 forecastSNSTS-1.2-0/forecastSNSTS/NEWS | 47 - forecastSNSTS-1.2-0/forecastSNSTS/R/RcppExports.R | 226 +++--- forecastSNSTS-1.2-0/forecastSNSTS/R/acfARp.R | 174 ++-- forecastSNSTS-1.2-0/forecastSNSTS/R/f.R | 368 +++++----- forecastSNSTS-1.2-0/forecastSNSTS/R/forecastSNSTS-package.R | 20 forecastSNSTS-1.2-0/forecastSNSTS/R/measure-of-accuracy.R |only forecastSNSTS-1.2-0/forecastSNSTS/R/models.R | 110 +- forecastSNSTS-1.2-0/forecastSNSTS/demo/00Index | 2 forecastSNSTS-1.2-0/forecastSNSTS/demo/tvARMA11.R | 218 ++--- forecastSNSTS-1.2-0/forecastSNSTS/inst/examples/computeMSPE.R | 58 - forecastSNSTS-1.2-0/forecastSNSTS/inst/examples/mspe.R | 22 forecastSNSTS-1.2-0/forecastSNSTS/inst/examples/tvARMA.R | 106 +- forecastSNSTS-1.2-0/forecastSNSTS/man/acfARp.Rd | 79 +- forecastSNSTS-1.2-0/forecastSNSTS/man/f.Rd | 9 forecastSNSTS-1.2-0/forecastSNSTS/man/forecastSNSTS-package.Rd | 30 forecastSNSTS-1.2-0/forecastSNSTS/man/measure-of-accuracy.Rd |only forecastSNSTS-1.2-0/forecastSNSTS/man/plot.measure-of-accuracy.Rd |only forecastSNSTS-1.2-0/forecastSNSTS/man/predCoef.Rd | 161 ++-- forecastSNSTS-1.2-0/forecastSNSTS/man/ts-models-tvARMA.Rd | 79 +- forecastSNSTS-1.2-0/forecastSNSTS/src/RcppExports.cpp | 31 forecastSNSTS-1.2-0/forecastSNSTS/src/computeMSPE.cpp | 88 +- forecastSNSTS-1.2-0/forecastSNSTS/src/predCoef.cpp | 6 forecastSNSTS-1.2-0/forecastSNSTS/src/tvARMA.cpp | 20 forecastSNSTS-1.2-0/forecastSNSTS/tests/testthat.R | 8 forecastSNSTS-1.2-0/forecastSNSTS/tests/testthat/test-acfARp.R | 114 +-- forecastSNSTS-1.2-0/forecastSNSTS/tests/testthat/test-coefficients.R | 160 ++-- forecastSNSTS-1.2-0/forecastSNSTS/tests/testthat/test-computeMSPE.R | 100 +- forecastSNSTS-1.2-0/forecastSNSTS/tests/testthat/test-f.R | 62 - forecastSNSTS-1.2-0/forecastSNSTS/tests/testthat/test-measure-of-accuracy.R |only forecastSNSTS-1.2-0/forecastSNSTS/tests/testthat/test-tvARMA.R | 170 ++-- 37 files changed, 1344 insertions(+), 1236 deletions(-)
Title: Convenient Functions for Ensemble Time Series Forecasts
Description: Convenient functions for ensemble forecasts in R combining
approaches from the 'forecast' package. Forecasts generated from auto.arima(), ets(),
thetam(), nnetar(), stlm(), and tbats() can be combined with equal weights, weights
based on in-sample errors, or CV weights. Cross validation for time series data
and user-supplied models and forecasting functions is also supported to evaluate model accuracy.
Author: David Shaub [aut, cre],
Peter Ellis [aut]
Maintainer: David Shaub <davidshaub@gmx.com>
Diff between forecastHybrid versions 0.4.0 dated 2017-03-31 and 0.4.1 dated 2017-06-18
forecastHybrid-0.4.0/forecastHybrid/man/accuracy.Rd |only forecastHybrid-0.4.0/forecastHybrid/man/accuracy.default.Rd |only forecastHybrid-0.4.1/forecastHybrid/DESCRIPTION | 10 forecastHybrid-0.4.1/forecastHybrid/MD5 | 16 forecastHybrid-0.4.1/forecastHybrid/NAMESPACE | 2 forecastHybrid-0.4.1/forecastHybrid/R/hybridModel.R | 27 forecastHybrid-0.4.1/forecastHybrid/inst/NEWS.md | 3 forecastHybrid-0.4.1/forecastHybrid/inst/doc/forecastHybrid.html | 748 ++++++---- forecastHybrid-0.4.1/forecastHybrid/tests/testthat/test-hybridModel.R | 2 forecastHybrid-0.4.1/forecastHybrid/vignettes/forecastHybrid.Rmd | 2 10 files changed, 502 insertions(+), 308 deletions(-)
More information about forecastHybrid at CRAN
Permanent link
Title: R Database Interface
Description: A database interface definition for communication
between R and relational database management systems. All
classes in this package are virtual and need to be extended by
the various R/DBMS implementations.
Author: R Special Interest Group on Databases (R-SIG-DB) [aut],
Hadley Wickham [aut],
Kirill Müller [aut, cre]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between DBI versions 0.6-1 dated 2017-04-01 and 0.7 dated 2017-06-18
DESCRIPTION | 14 ++-- MD5 | 66 +++++++++++------------ NEWS.md | 7 ++ R/DBConnection.R | 27 +++------ R/DBResult.R | 5 - R/data-types.R | 4 + R/data.R | 6 -- R/deprecated.R | 24 +++----- R/interpolate.R | 10 +-- R/quote.R | 10 +-- R/table-create.R | 6 -- R/table-insert.R | 6 -- README.md | 2 build/vignette.rds |binary inst/doc/DBI-1.html | 4 - inst/doc/DBI-proposal.html | 4 - inst/doc/backend.html | 8 +- inst/doc/spec.html | 129 +++++++++++++++++++++++++++++++++++---------- man/DBI-package.Rd | 4 - man/dbBind.Rd | 22 +++++++ man/dbDataType.Rd | 6 +- man/dbDisconnect.Rd | 3 - man/dbExistsTable.Rd | 4 + man/dbFetch.Rd | 12 +++- man/dbGetQuery.Rd | 2 man/dbListTables.Rd | 2 man/dbQuoteIdentifier.Rd | 9 ++- man/dbQuoteString.Rd | 1 man/dbReadTable.Rd | 8 ++ man/dbRemoveTable.Rd | 4 + man/dbWithTransaction.Rd | 1 man/dbWriteTable.Rd | 29 ++++++++-- man/hidden_aliases.Rd | 4 + man/transactions.Rd | 6 +- 34 files changed, 288 insertions(+), 161 deletions(-)
Title: Statistical Modeling
Description: A collection of algorithms and functions to aid statistical modeling. Includes growth curve comparisons, limiting dilution analysis (aka ELDA), mixed linear models, heteroscedastic regression, inverse-Gaussian probability calculations, Gauss quadrature and a secure convergence algorithm for nonlinear models. Includes advanced generalized linear model functions that implement secure convergence, dispersion modeling and Tweedie power-law families.
Author: Gordon Smyth [cre, aut], Yifang Hu [ctb], Peter Dunn [ctb], Belinda Phipson [ctb], Yunshun Chen [ctb]
Maintainer: Gordon Smyth <smyth@wehi.edu.au>
Diff between statmod versions 1.4.29 dated 2017-02-27 and 1.4.30 dated 2017-06-18
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/invgauss.R | 4 ++-- inst/CITATION | 26 +++++++++++++++++++------- inst/NEWS | 6 ++++++ man/remlscorgamma.Rd | 3 +-- 6 files changed, 37 insertions(+), 20 deletions(-)
Title: Analysis of Quaternary Science Data
Description: Functions for the analysis of Quaternary science data, including
constrained clustering, WA, WAPLS, IKFA, MLRC and MAT transfer
functions, and stratigraphic diagrams.
Author: Steve Juggins
Maintainer: Steve Juggins <Stephen.Juggins@ncl.ac.uk>
Diff between rioja versions 0.9-14 dated 2017-06-14 and 0.9-15 dated 2017-06-18
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/strat.plot.r | 2 +- inst/ChangeLog | 3 +++ man/rioja.package.Rd | 4 ++-- src/tilfuncs.h | 45 +++++++++++++++++++++++++++++++++++++++++++-- 6 files changed, 58 insertions(+), 14 deletions(-)
Title: A Swiss-Army Knife for Data I/O
Description: Streamlined data import and export by making assumptions that
the user is probably willing to make: 'import()' and 'export()' determine
the data structure from the file extension, reasonable defaults are used for
data import and export (e.g., 'stringsAsFactors=FALSE'), web-based import is
natively supported (including from SSL/HTTPS), compressed files can be read
directly without explicit decompression, and fast import packages are used where
appropriate. An additional convenience function, 'convert()', provides a simple
method for converting between file types.
Author: Jason Becker [ctb],
Chung-hong Chan [aut],
Geoffrey CH Chan [ctb],
Thomas J. Leeper [aut, cre],
Christopher Gandrud [ctb],
Andrew MacDonald [ctb],
Ista Zahn [ctb],
Stanislaus Stadlmann [ctb]
Maintainer: Thomas J. Leeper <thosjleeper@gmail.com>
Diff between rio versions 0.5.0 dated 2017-04-28 and 0.5.5 dated 2017-06-18
rio-0.5.0/rio/R/cleanup_haven.R |only rio-0.5.5/rio/DESCRIPTION | 8 - rio-0.5.5/rio/MD5 | 81 ++++++++++---------- rio-0.5.5/rio/NAMESPACE | 8 + rio-0.5.5/rio/NEWS.md | 25 ++++++ rio-0.5.5/rio/R/characterize.R |only rio-0.5.5/rio/R/compression.R | 29 +++---- rio-0.5.5/rio/R/convert.R | 3 rio-0.5.5/rio/R/export.R | 7 + rio-0.5.5/rio/R/export_methods.R | 3 rio-0.5.5/rio/R/extensions.R | 11 +- rio-0.5.5/rio/R/gather_attrs.R | 36 +++++++- rio-0.5.5/rio/R/import.R | 31 +++++-- rio-0.5.5/rio/R/import_list.R | 75 +++++++++++------- rio-0.5.5/rio/R/import_methods.R | 63 ++++++++------- rio-0.5.5/rio/R/set_class.R | 2 rio-0.5.5/rio/R/standardize_attributes.R |only rio-0.5.5/rio/R/suggestions.R | 1 rio-0.5.5/rio/R/utils.R | 6 - rio-0.5.5/rio/README.md | 34 ++++++-- rio-0.5.5/rio/build/vignette.rds |binary rio-0.5.5/rio/inst/doc/rio.Rmd | 48 +++++++++++ rio-0.5.5/rio/inst/doc/rio.html | 35 ++++++++ rio-0.5.5/rio/man/characterize.Rd |only rio-0.5.5/rio/man/export.Rd | 4 rio-0.5.5/rio/man/gather_attrs.Rd | 15 ++- rio-0.5.5/rio/man/import.Rd | 6 - rio-0.5.5/rio/po/R-rio.pot | 62 +++++++++------ rio-0.5.5/rio/tests/testthat/test_characterize.R |only rio-0.5.5/rio/tests/testthat/test_compress.R | 11 +- rio-0.5.5/rio/tests/testthat/test_convert.R | 11 ++ rio-0.5.5/rio/tests/testthat/test_format_dif.R | 6 - rio-0.5.5/rio/tests/testthat/test_format_fortran.R | 8 + rio-0.5.5/rio/tests/testthat/test_format_ods.R | 6 + rio-0.5.5/rio/tests/testthat/test_format_rdata.R | 9 ++ rio-0.5.5/rio/tests/testthat/test_format_sas.R | 6 + rio-0.5.5/rio/tests/testthat/test_format_syd.R | 5 - rio-0.5.5/rio/tests/testthat/test_format_xls.R | 4 rio-0.5.5/rio/tests/testthat/test_gather_attrs.R | 61 +++++++++------ rio-0.5.5/rio/tests/testthat/test_guess.R | 7 + rio-0.5.5/rio/tests/testthat/test_import_list.R |only rio-0.5.5/rio/tests/testthat/test_install_formats.R |only rio-0.5.5/rio/tests/testthat/test_remote.R | 23 +++-- rio-0.5.5/rio/tests/testthat/test_set_class.R | 7 + rio-0.5.5/rio/vignettes/rio.Rmd | 48 +++++++++++ 45 files changed, 580 insertions(+), 225 deletions(-)
Title: Hierarchical and Grouped Time Series
Description: Methods for analysing and forecasting hierarchical and grouped time
series.
Author: Rob Hyndman [aut],
Alan Lee [aut] (Fast computation using recursive methods),
Earo Wang [aut, cre],
Shanika Wickramasuriya [ctb, cph] (Forecasting via trace minimization)
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between hts versions 5.0 dated 2016-04-06 and 5.1.0 dated 2017-06-18
hts-5.0/hts/ChangeLog |only hts-5.0/hts/R/accuracy.gts.R |only hts-5.0/hts/R/forecast.gts.R |only hts-5.0/hts/R/plot.gts.R |only hts-5.0/hts/R/summary.gts.R |only hts-5.0/hts/R/window.gts.R |only hts-5.0/hts/demo |only hts-5.0/hts/man/gts.Rd |only hts-5.0/hts/man/hts.Rd |only hts-5.1.0/hts/DESCRIPTION | 35 +++-- hts-5.1.0/hts/MD5 | 89 ++++++------ hts-5.1.0/hts/NAMESPACE | 87 +++++++----- hts-5.1.0/hts/NEWS.md |only hts-5.1.0/hts/R/MinT.R | 83 +++++++++++ hts-5.1.0/hts/R/RcppExports.R | 2 hts-5.1.0/hts/R/accuracy-gts.R |only hts-5.1.0/hts/R/aggts.R | 42 ++++++ hts-5.1.0/hts/R/combinef.R | 61 ++++++++ hts-5.1.0/hts/R/forecast-gts.R |only hts-5.1.0/hts/R/gts.R | 144 ++++++++++++++++++-- hts-5.1.0/hts/R/hts-package.R |only hts-5.1.0/hts/R/hts.R | 100 ++++++++++++++ hts-5.1.0/hts/R/imports.R |only hts-5.1.0/hts/R/plot-gts.R |only hts-5.1.0/hts/R/smatrix.R | 21 +++ hts-5.1.0/hts/R/tracemin.R | 3 hts-5.1.0/hts/R/window-gts.R |only hts-5.1.0/hts/README.md | 265 +++++++++++++++++++++++++++++++++----- hts-5.1.0/hts/build/vignette.rds |binary hts-5.1.0/hts/data/htseg1.rda |binary hts-5.1.0/hts/data/htseg2.rda |binary hts-5.1.0/hts/inst/doc/hts.Rnw | 3 hts-5.1.0/hts/inst/doc/hts.pdf |binary hts-5.1.0/hts/man/MinT.Rd | 86 +++++++----- hts-5.1.0/hts/man/accuracy.gts.Rd | 86 ++++++------ hts-5.1.0/hts/man/aggts.Rd | 33 +++- hts-5.1.0/hts/man/allts.Rd | 31 ++-- hts-5.1.0/hts/man/combinef.Rd | 80 +++++++---- hts-5.1.0/hts/man/figure |only hts-5.1.0/hts/man/forecast.gts.Rd | 204 ++++++++++++++++++----------- hts-5.1.0/hts/man/gts-class.Rd |only hts-5.1.0/hts/man/hts-class.Rd |only hts-5.1.0/hts/man/hts-package.Rd | 53 ++++--- hts-5.1.0/hts/man/htseg1.Rd | 31 ++-- hts-5.1.0/hts/man/infantgts.Rd | 27 ++- hts-5.1.0/hts/man/plot.gts.Rd | 56 +++++--- hts-5.1.0/hts/man/smatrix.Rd | 37 +++-- hts-5.1.0/hts/man/window.gts.Rd | 24 ++- hts-5.1.0/hts/src/RcppExports.cpp | 21 ++- hts-5.1.0/hts/vignettes/hts.Rnw | 3 50 files changed, 1260 insertions(+), 447 deletions(-)
Title: Dynamic Hazard Models using State Space Models
Description: Contains functions that lets you fit dynamic hazard models with binary
outcomes using state space models. The methods are originally described in
Fahrmeir (1992) <doi:10.1080/01621459.1992.10475232> and Fahrmeir (1994)
<doi:10.1093/biomet/81.2.317>. The functions also provide an extension hereof where the
Extended Kalman filter is replaced by an Unscented Kalman filter. Models are
fitted with the regular coxph() like formula.
Author: Benjamin Christoffersen [cre, aut],
Alan Miller [cph],
Anthony Williams [cph],
Boost developers [cph],
R-core [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between dynamichazard versions 0.3.2 dated 2017-06-09 and 0.3.3 dated 2017-06-18
dynamichazard-0.3.2/dynamichazard/src/thread_pool.cpp |only dynamichazard-0.3.3/dynamichazard/DESCRIPTION | 6 dynamichazard-0.3.3/dynamichazard/MD5 | 65 +-- dynamichazard-0.3.3/dynamichazard/R/boot_est.R | 5 dynamichazard-0.3.3/dynamichazard/R/ddhazard.R | 14 dynamichazard-0.3.3/dynamichazard/R/plot.R | 7 dynamichazard-0.3.3/dynamichazard/R/risk_obj.R | 64 ++- dynamichazard-0.3.3/dynamichazard/inst/doc/Bootstrap_illustration.pdf |binary dynamichazard-0.3.3/dynamichazard/inst/doc/Comparing_methods_for_logistic_models.R | 6 dynamichazard-0.3.3/dynamichazard/inst/doc/Comparing_methods_for_logistic_models.Rmd | 6 dynamichazard-0.3.3/dynamichazard/inst/doc/Comparing_methods_for_logistic_models.pdf |binary dynamichazard-0.3.3/dynamichazard/inst/doc/Diagnostics.R | 3 dynamichazard-0.3.3/dynamichazard/inst/doc/Diagnostics.Rmd | 3 dynamichazard-0.3.3/dynamichazard/inst/doc/Diagnostics.pdf |binary dynamichazard-0.3.3/dynamichazard/inst/doc/Sim_study_with_logit.pdf |binary dynamichazard-0.3.3/dynamichazard/inst/doc/ddhazard.R | 3 dynamichazard-0.3.3/dynamichazard/inst/doc/ddhazard.Rmd | 3 dynamichazard-0.3.3/dynamichazard/inst/doc/ddhazard.pdf |binary dynamichazard-0.3.3/dynamichazard/src/LAPACK_BLAS_wrapper.cpp | 62 +++ dynamichazard-0.3.3/dynamichazard/src/LAPACK_BLAS_wrapper.h | 7 dynamichazard-0.3.3/dynamichazard/src/Makevars | 6 dynamichazard-0.3.3/dynamichazard/src/Makevars.win | 10 dynamichazard-0.3.3/dynamichazard/src/arma_utils.cpp | 20 + dynamichazard-0.3.3/dynamichazard/src/arma_utils.h | 4 dynamichazard-0.3.3/dynamichazard/src/ddhazard.h | 64 ++- dynamichazard-0.3.3/dynamichazard/src/ddhazard_EKF_solver.cpp | 188 ++++------ dynamichazard-0.3.3/dynamichazard/src/ddhazard_GMA_solver.cpp | 23 - dynamichazard-0.3.3/dynamichazard/src/ddhazard_SMA_solver.cpp | 1 dynamichazard-0.3.3/dynamichazard/src/thread_pool.h | 178 +++------ dynamichazard-0.3.3/dynamichazard/tests/testthat/test_LAPACK_BLAS_wrapper.R | 3 dynamichazard-0.3.3/dynamichazard/tests/testthat/testdesign_mat_and_risk_obj.R | 74 +++ dynamichazard-0.3.3/dynamichazard/vignettes/Comparing_methods_for_logistic_models.Rmd | 6 dynamichazard-0.3.3/dynamichazard/vignettes/Diagnostics.Rmd | 3 dynamichazard-0.3.3/dynamichazard/vignettes/ddhazard.Rmd | 3 34 files changed, 499 insertions(+), 338 deletions(-)
Title: Multivariate Dependence with Copulas
Description: Classes (S4) of commonly used elliptical, Archimedean,
extreme-value and other copula families, as well as their rotations,
mixtures and asymmetrizations. Nested Archimedean copulas, related
tools and special functions. Methods for density, distribution, random
number generation, bivariate dependence measures, Rosenblatt transform,
Kendall distribution function, perspective and contour plots. Fitting of
copula models with potentially partly fixed parameters, including
standard errors. Serial independence tests, copula specification tests
(independence, exchangeability, radial symmetry, extreme-value
dependence, goodness-of-fit) and model selection based on
cross-validation. Empirical copula, smoothed versions, and
non-parametric estimators of the Pickands dependence function.
Author: Marius Hofert <marius.hofert@uwaterloo.ca>,
Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>,
Martin Maechler <maechler@stat.math.ethz.ch>, and
Jun Yan <jun.yan@uconn.edu>
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between copula versions 0.999-16 dated 2017-01-09 and 0.999-17 dated 2017-06-18
DESCRIPTION | 37 - MD5 | 165 +++--- NAMESPACE | 8 R/An.R | 14 R/Auxiliaries.R | 14 R/Classes.R | 4 R/amhCopula.R | 32 - R/asymCopula.R | 2 R/aux-acopula.R | 32 - R/claytonCopula.R | 108 ++-- R/cop_objects.R | 8 R/ellipCopula.R | 7 R/empcop.R | 8 R/estimation.R | 3 R/evTests.R | 11 R/exchTests.R | 17 R/fgmCopula.R | 62 +- R/frankCopula.R | 40 - R/galambosCopula.R | 32 - R/gofCopula.R | 59 +- R/gofEVTests.R | 32 - R/gumbelCopula.R | 29 - R/huslerReissCopula.R | 28 - R/joeCopula.R | 23 R/logseries.R | 16 R/mixCopula.R | 6 R/plackettCopula.R | 2 R/rotCopula.R | 4 R/schlatherCopula.R | 2 R/tCopula.R | 4 R/tawnCopula.R | 15 R/tevCopula.R | 35 - R/varianceReduction.R |only R/xvCopula.R | 7 TODO | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 52 +- inst/doc/AC_Liouville.Rmd | 2 inst/doc/AC_Liouville.html | 343 +++++++++---- inst/doc/AR_Clayton.html | 398 ++++++++++----- inst/doc/Frank-Rmpfr.pdf |binary inst/doc/GIG.html | 692 ++++++++++++++++----------- inst/doc/NALC.html | 634 +++++++++++++++--------- inst/doc/copula_GARCH.html | 443 +++++++++++------ inst/doc/dNAC.html | 594 +++++++++++++++-------- inst/doc/logL_visualization.html | 998 +++++++++++++++++++++++++-------------- inst/doc/nacopula-pkg.pdf |binary inst/doc/qrng.html | 892 ++++++++++++++++++++++------------ inst/doc/rhoAMH-dilog.pdf |binary inst/doc/tail_compatibility.html | 728 +++++++++++++++++----------- inst/doc/wild_animals.html | 774 ++++++++++++++++++------------ man/An.Rd | 13 man/archmCopula.Rd | 1 man/cloud2-methods.Rd | 5 man/contourplot2-methods.Rd | 3 man/corKendall.Rd |only man/emde.Rd | 2 man/empcop.Rd | 28 - man/estim-misc.Rd | 58 +- man/evTestA.Rd | 6 man/evTestK.Rd | 15 man/exchEVTest.Rd | 11 man/exchTest.Rd | 11 man/fgmCopula-class.Rd | 4 man/fitCopula.Rd | 8 man/fixedPar.Rd | 24 man/gofCopula.Rd | 70 +- man/gofEVCopula.Rd | 10 man/nacPairthetas.Rd | 3 man/pobs.Rd | 27 - man/radSymTest.Rd | 6 man/splom2-methods.Rd | 4 man/varianceReduction.Rd |only man/wireframe2-methods.Rd | 2 man/xvCopula.Rd | 7 src/copula.h | 4 src/init.c | 4 src/logseries.c | 70 ++ tests/copula-play.R | 20 tests/fitting-ex.R | 3 tests/fixedPar-ex.R | 39 + tests/khoudraji-ex.R | 6 tests/mixCop-tst.R | 30 - vignettes/AC_Liouville.Rmd | 2 85 files changed, 5070 insertions(+), 2844 deletions(-)
Title: Detect Marine Heat Waves and Marine Cold Spells
Description: Given a time series of daily temperatures, the package provides tools
to detect extreme thermal events, including marine heat waves, and to
calculate the exceedances above or below specified threshold values.
It outputs the properties of all detected events and exceedances.
Author: Albertus J. Smit [aut, cre] (R implementation.),
Eric C. J. Oliver [aut] (The brain behind the Python implementation.),
Robert W. Schlegel [ctb] (Graphical and data summaries.)
Maintainer: Albertus J. Smit <albertus.smit@gmail.com>
Diff between RmarineHeatWaves versions 0.15.6 dated 2017-06-07 and 0.15.7 dated 2017-06-18
DESCRIPTION | 8 +- MD5 | 14 ++-- NEWS.md | 12 ++++ R/RmarineHeatWaves.R | 100 +++++++++++++++------------------- R/geom_flame.R | 2 inst/doc/gridded-event-detection.html | 4 - man/detect.Rd | 29 +++++++-- man/geom_flame.Rd | 2 8 files changed, 94 insertions(+), 77 deletions(-)
More information about RmarineHeatWaves at CRAN
Permanent link
Title: Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for
Phylogenetic Comparative Hypotheses
Description: Fits multivariate Ornstein-Uhlenbeck types of models to continues trait data from species related by a common evolutionary history.
Author: Krzysztof Bartoszek <bartoszekkj@gmail.com>
Maintainer: Krzysztof Bartoszek <bartoszekkj@gmail.com>
Diff between mvSLOUCH versions 1.3.2 dated 2016-06-06 and 1.3.3 dated 2017-06-18
DESCRIPTION | 6 - MD5 | 40 +++---- R/PhyloSDEestim.R | 14 +- R/ci.R | 187 ++++++++++++++++++------------------- R/estimGLSGC.R | 16 +-- R/estimMAXLIK.R | 15 -- R/evolmodelest.R | 52 ++++++---- R/matrixexps.R | 5 R/modelparams.R | 55 +++++----- R/modelparamssummary.R | 4 R/phylgls.R | 7 - R/sdemoments.R | 45 ++++++-- R/sdemomentsphyl.R | 52 +++++++++- R/simulVasicekprocphyl.R | 2 R/wrappers.R | 17 +-- man/estimate.evolutionary.model.Rd | 9 + man/mvslouchModel.Rd | 12 +- man/ouchModel.Rd | 10 + man/simulBMProcPhylTree.Rd | 4 man/simulMVSLOUCHProcPhylTree.Rd | 4 man/simulOUCHProcPhylTree.Rd | 4 21 files changed, 337 insertions(+), 223 deletions(-)