Title: Tools for Working with 'Taxonomic' Databases
Description: Tools for working with 'taxonomic' databases, including
utilities for downloading databases, loading them into various
'SQL' databases, cleaning up files, and providing a 'SQL' connection
that can be used to do 'SQL' queries directly or used in 'dplyr'.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between taxizedb versions 0.1.0 dated 2017-05-03 and 0.1.4 dated 2017-06-20
DESCRIPTION | 14 +++--- MD5 | 24 +++++----- NAMESPACE | 10 +++- NEWS.md | 10 ++++ R/db_load.R | 58 ++++++++++++++----------- R/src.R | 25 +++++++---- R/taxizedb-package.R | 8 ++- R/zzz.R | 16 +++---- README.md | 85 ++++++++++++++++---------------------- man/db_load.Rd | 13 ++--- man/src_taxizedb.Rd | 7 +-- tests/testthat/test-sql_collect.R | 4 - tests/testthat/test-src.R | 8 +-- 13 files changed, 150 insertions(+), 132 deletions(-)
Title: External Jars Required for Package 'rkafka'
Description: The 'rkafkajars' package collects all the external jars required for the 'rkafka' package.
Author: Shruti Gupta [aut,cre], Coda Hale and Yammer Inc.[ctb,cph],Sun Microsystems Inc.[ctb,cph],Marc Prud'hommeaux[ctb,cph],Paul Holser[ctb],Junit[ctb,cph],The Apache Software Foundation [ctb,cph],Stefan Groschupf[ctb,cph],Taro L.Saito[ctb],EPFL Typesafe Inc.[ctb,cph],QOS.ch[ctb,cph]
Maintainer: Shruti Gupta <shrutigupta34@gmail.com>
Diff between rkafkajars versions 1.0 dated 2015-04-10 and 1.1 dated 2017-06-20
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: 'Rcpp' Bindings for the 'CCTZ' Library
Description: 'Rcpp' Access to the 'CCTZ' timezone library is provided. 'CCTZ' is
a C++ library for translating between absolute and civil times using the rules
of a time zone. The 'CCTZ' source code, released under the Apache 2.0 License,
is included in this package. See <https://github.com/google/cctz> for more
details.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppCCTZ versions 0.2.2 dated 2017-04-21 and 0.2.3 dated 2017-06-20
RcppCCTZ-0.2.2/RcppCCTZ/src/init.c |only RcppCCTZ-0.2.3/RcppCCTZ/ChangeLog | 24 +++++++++++++++++ RcppCCTZ-0.2.3/RcppCCTZ/DESCRIPTION | 8 ++--- RcppCCTZ-0.2.3/RcppCCTZ/MD5 | 21 +++++++-------- RcppCCTZ-0.2.3/RcppCCTZ/R/RcppExports.R | 28 ++++++++++---------- RcppCCTZ-0.2.3/RcppCCTZ/R/init.R | 7 ++--- RcppCCTZ-0.2.3/RcppCCTZ/README.md | 2 - RcppCCTZ-0.2.3/RcppCCTZ/inst/NEWS.Rd | 11 +++++++ RcppCCTZ-0.2.3/RcppCCTZ/src/RcppExports.cpp | 23 ++++++++++++++++ RcppCCTZ-0.2.3/RcppCCTZ/src/time_tool.cc | 2 + RcppCCTZ-0.2.3/RcppCCTZ/src/utilities.cpp | 10 ++----- RcppCCTZ-0.2.3/RcppCCTZ/tests/simpleTests.Rout.save | 7 ++--- 12 files changed, 100 insertions(+), 43 deletions(-)
Title: Tools for the 'qdap' Package
Description: A collection of tools associated with the 'qdap' package
that may be useful outside of the context of text analysis.
Author: Bryan Goodrich [ctb],
Dason Kurkiewicz [ctb],
Kirill Muller [ctb],
Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between qdapTools versions 1.3.1 dated 2015-09-25 and 1.3.3 dated 2017-06-20
DESCRIPTION | 9 +++-- MD5 | 54 ++++++++++++++++----------------- NAMESPACE | 2 - NEWS | 18 ++++++++++- R/hms2sec.R | 8 +++- README.md | 12 +++---- inst/CITATION | 4 +- man/Deprecated.Rd | 15 ++++----- man/hash.Rd | 25 +++++++-------- man/id.Rd | 11 +++--- man/list2df.Rd | 39 +++++++++++------------- man/loc_split.Rd | 17 ++++------ man/lookup.Rd | 68 ++++++++++++++++++++++-------------------- man/lookup_e.Rd | 35 +++++++++++---------- man/mtabulate.Rd | 21 ++++++------ man/pad.Rd | 21 ++++++------ man/print.v_outer.Rd | 3 - man/read_docx.Rd | 7 +--- man/repo2github.Rd | 44 +++++++++++++-------------- man/run_split.Rd | 9 ++--- man/shift.Rd | 7 +--- man/split_vector.Rd | 17 ++++------ man/start_end.Rd | 9 ++--- man/text2color.Rd | 17 ++++------ man/timeconv.Rd | 5 +-- man/url_dl.Rd | 9 ++--- man/v_outer.Rd | 19 +++++------ tests/testthat/test-hms2sec.R | 2 - 28 files changed, 257 insertions(+), 250 deletions(-)
Title: Bayesian Network Structure Learning
Description: From a given data frame, this package learns its Bayesian network structure based on a selected score.
Author: Joe Suzuki and Jun Kawahara
Maintainer: Joe Suzuki <j-suzuki@sigmath.es.osaka-u.ac.jp>
Diff between BNSL versions 0.1.1 dated 2017-06-20 and 0.1.2 dated 2017-06-20
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/parent_set.cpp | 5 +++++ 3 files changed, 11 insertions(+), 6 deletions(-)
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889> and Mohammadi et al. (2017) <doi:10.1111/rssc.12171>. To speed up the computations, the BDMCMC sampling algorithms are implemented in parallel using OpenMP in C++.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>
Diff between BDgraph versions 2.37 dated 2017-05-24 and 2.38 dated 2017-06-20
DESCRIPTION | 8 MD5 | 66 +++---- NEWS | 5 R/bdgraph.ts.R | 13 + man/BDgraph-package.Rd | 4 man/bdgraph.Rd | 2 man/bdgraph.mpl.Rd | 4 man/bdgraph.sim.Rd | 2 man/bdgraph.ts.Rd | 282 ++++++++++++++++--------------- man/compare.Rd | 2 man/gnorm.Rd | 2 man/pgraph.Rd | 2 man/plinks.Rd | 2 man/plot.bdgraph.Rd | 2 man/plot.sim.Rd | 2 man/plotcoda.Rd | 4 man/plotroc.Rd | 4 man/print.bdgraph.Rd | 2 man/print.sim.Rd | 2 man/rgwish.Rd | 2 man/rwish.Rd | 2 man/select.Rd | 2 man/summary.bdgraph.Rd | 2 man/traceplot.Rd | 2 src/bd_for_ts.cpp | 438 ++++++++++++++++++------------------------------- src/copula.cpp | 71 +++---- src/gcgm_bd.cpp | 10 + src/ggm_bd.cpp | 12 + src/ggm_mpl_bd.cpp | 7 src/gm_mpl_bd_dis.cpp | 30 ++- src/init.c | 4 src/matrix.cpp | 255 +++++++++++++++++++++++++--- src/matrix.h | 5 src/rgwish.cpp | 38 ++-- 34 files changed, 738 insertions(+), 552 deletions(-)
Title: Downloads, Unpacks and Tidies Legislative Data from the
Brazilian Federal Senate and Chamber of Deputies
Description: Downloads and tidies data from the Brazilian Federal Senate and Chamber of Deputies Application Programming Interfaces available at <http://legis.senado.gov.br/dadosabertos/> and <http://www.camara.leg.br/SitCamaraWS/> respectively.
Author: Robert Myles McDonnell, Guilherme Jardim Duarte and Danilo Freire
Maintainer: Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>
Diff between congressbr versions 0.1.0 dated 2017-04-30 and 0.1.1 dated 2017-06-20
DESCRIPTION | 6 +- MD5 | 40 +++++++++-------- NEWS.md |only R/cham_bill_info.R | 3 - R/cham_bills.R | 3 - R/cham_votes.R | 2 R/sen_commission_list.R | 9 +-- R/sen_senator_list.R | 10 +++- R/sen_various.R | 2 R/statesBR.R | 2 README.md | 106 ++++++++++++++++++++++++++++++++++++++++++++--- build/vignette.rds |binary data/statesBR.rda |binary inst/CITATION |only inst/doc/chamber.html | 25 +++++------ inst/doc/senate.html | 8 +-- man/cham_bill_info.Rd | 5 -- man/cham_bills.Rd | 5 -- man/cham_votes.Rd | 2 man/sen_senator_legis.Rd | 2 man/sen_senator_list.Rd | 4 + man/statesBR.Rd | 2 22 files changed, 161 insertions(+), 75 deletions(-)
Title: Loading NONMEM Output Files and Simulate with Parameter
Uncertainty
Description: Loading NONMEM (NONlinear Mixed-Effect Modeling, <http://www.iconplc.com/innovation/solutions/nonmem/> ) output files and simulate with parameter uncertainty.
Author: Magnus Astrand
Maintainer: Magnus Astrand <magnus.astrand@astrazeneca.com>
Diff between nonmem2R versions 0.1.5 dated 2016-10-25 and 0.1.7 dated 2017-06-20
DESCRIPTION | 6 - MD5 | 13 +-- NAMESPACE | 3 R/LoadNonmemOutput.R | 194 ++++++++++++++++++++++++++++++++++++++++++++++++++- R/Simulation.R | 3 R/VPCs.R | 9 ++ man/sumoR.Rd |only man/vpcfig.Rd | 4 - 8 files changed, 218 insertions(+), 14 deletions(-)
Title: Area-Proportional Euler Diagrams
Description: If possible, generates exactly area-proportional Euler diagrams,
or otherwise approximately proportional diagrams using numerical
optimization. A Euler diagram is a generalization of a Venn diagram,
relaxing the criterion that all interactions need to be represented.
Author: Johan Larsson [aut, cre],
A. Jonathan R. Godfrey [ctb]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Diff between eulerr versions 1.1.0 dated 2017-02-05 and 2.0.0 dated 2017-06-20
eulerr-1.1.0/eulerr/R/main-old.R |only eulerr-1.1.0/eulerr/R/main.R |only eulerr-1.1.0/eulerr/R/plotting.R |only eulerr-1.1.0/eulerr/R/utils-old.r |only eulerr-1.1.0/eulerr/R/utils.r |only eulerr-2.0.0/eulerr/DESCRIPTION | 22 +-- eulerr-2.0.0/eulerr/MD5 | 70 ++++++---- eulerr-2.0.0/eulerr/NAMESPACE | 38 +++++ eulerr-2.0.0/eulerr/NEWS.md | 29 ++++ eulerr-2.0.0/eulerr/R/RcppExports.R | 22 ++- eulerr-2.0.0/eulerr/R/euler.R |only eulerr-2.0.0/eulerr/R/eulerr.R | 10 + eulerr-2.0.0/eulerr/R/geometry.R | 10 - eulerr-2.0.0/eulerr/R/lattice-imports.R |only eulerr-2.0.0/eulerr/R/optimization.R | 2 eulerr-2.0.0/eulerr/R/plot.euler.R |only eulerr-2.0.0/eulerr/R/print.euler.R |only eulerr-2.0.0/eulerr/R/utils.R |only eulerr-2.0.0/eulerr/README.md | 22 +-- eulerr-2.0.0/eulerr/build/vignette.rds |binary eulerr-2.0.0/eulerr/inst/doc/Introduction.R | 5 eulerr-2.0.0/eulerr/inst/doc/Introduction.Rmd | 33 ++--- eulerr-2.0.0/eulerr/inst/doc/Introduction.html | 42 ++---- eulerr-2.0.0/eulerr/man/center_circles.Rd |only eulerr-2.0.0/eulerr/man/dont_plot.Rd |only eulerr-2.0.0/eulerr/man/dont_print.Rd |only eulerr-2.0.0/eulerr/man/euler.Rd | 138 ++++++++++++--------- eulerr-2.0.0/eulerr/man/eulerr.Rd | 97 -------------- eulerr-2.0.0/eulerr/man/is_false.Rd |only eulerr-2.0.0/eulerr/man/locate_centers.Rd |only eulerr-2.0.0/eulerr/man/panel.euler.Rd |only eulerr-2.0.0/eulerr/man/panel.euler.circles.Rd |only eulerr-2.0.0/eulerr/man/panel.euler.labels.Rd |only eulerr-2.0.0/eulerr/man/plot.euler.Rd | 120 ++++++++---------- eulerr-2.0.0/eulerr/man/prepanel.euler.Rd |only eulerr-2.0.0/eulerr/man/print.euler.Rd | 10 - eulerr-2.0.0/eulerr/man/qualpalr_pal.Rd |only eulerr-2.0.0/eulerr/man/rescale.Rd |only eulerr-2.0.0/eulerr/man/tally_combinations.Rd |only eulerr-2.0.0/eulerr/man/update_list.Rd |only eulerr-2.0.0/eulerr/src/RcppExports.cpp | 65 ++++++++- eulerr-2.0.0/eulerr/src/optim_final.cpp | 35 +++-- eulerr-2.0.0/eulerr/src/utils.cpp | 25 +++ eulerr-2.0.0/eulerr/tests/testthat/test_geometry.R | 5 eulerr-2.0.0/eulerr/tests/testthat/test_inputs.R | 11 - eulerr-2.0.0/eulerr/tests/testthat/test_plotting.R | 53 +------- eulerr-2.0.0/eulerr/tools |only eulerr-2.0.0/eulerr/vignettes/Introduction.Rmd | 33 ++--- 48 files changed, 466 insertions(+), 431 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2016) <arXiv:1508.06749>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 0.1-3 dated 2017-04-05 and 0.2-0 dated 2017-06-20
DESCRIPTION | 14 +++++++------- MD5 | 24 ++++++++++++------------ NAMESPACE | 9 ++++++++- R/R.R | 45 ++++++++++++++++++++++++++++++++++++++++++++- R/methods.R | 1 + inst/NEWS.Rd | 11 +++++++++++ man/R.Rd | 12 +++++++++++- man/ctm.Rd | 5 +++-- man/mlt-package.Rd | 7 ++++--- man/mlt.Rd | 7 ++++--- tests/Cox-Ex.Rout.save | 12 ++++++------ tests/surv-Ex.R | 9 +++++++++ tests/surv-Ex.Rout.save | 18 ++++++++++++++++-- 13 files changed, 136 insertions(+), 38 deletions(-)
Title: Method Functions for Confidence Intervals and to Distill
Information from an Object
Description: Some very simple method functions for confidence interval calculation, bootstrap resampling, and to distill pertinent information from a potentially complex object; primarily used in common with packages extRemes and SpatialVx.
Author: Eric Gilleland
Maintainer: Eric Gilleland <ericg@ucar.edu>
Diff between distillery versions 1.0-2 dated 2015-07-24 and 1.0-4 dated 2017-06-20
DESCRIPTION | 10 +++++----- MD5 | 13 ++++++++++--- NAMESPACE | 11 ++++++++++- R/booter.R |only R/tibber.R |only man/booter.Rd |only man/ci.booted.Rd |only man/distillery-internal.Rd |only man/distillery-package.Rd | 4 +++- man/pbooter.Rd |only man/tibber.Rd |only 11 files changed, 28 insertions(+), 10 deletions(-)
Title: Fractional ARIMA (and Other Long Memory) Time Series Modeling
Description: Simulates, fits, and predicts long-memory and anti-persistent time
series, possibly mixed with ARMA, regression, transfer-function components.
Exact methods (MLE, forecasting, simulation) are used.
Author: JQ (Justin) Veenstra [aut, cre],
A.I. McLeod [aut]
Maintainer: JQ (Justin) Veenstra <jqveenstra@gmail.com>
Diff between arfima versions 1.3-4 dated 2015-12-31 and 1.4-0 dated 2017-06-20
arfima-1.3-4/arfima/man/resid.arfima.Rd |only arfima-1.4-0/arfima/DESCRIPTION | 23 arfima-1.4-0/arfima/LICENSE |only arfima-1.4-0/arfima/MD5 | 112 - arfima-1.4-0/arfima/NAMESPACE | 44 arfima-1.4-0/arfima/R/ARToPacf.R | 97 + arfima-1.4-0/arfima/R/Boot.ARFIMA.R | 248 +-- arfima-1.4-0/arfima/R/Boot.R | 20 arfima-1.4-0/arfima/R/InvertibleQ.R | 360 +++-- arfima-1.4-0/arfima/R/arfima.R | 1520 ++++------------------- arfima-1.4-0/arfima/R/arfima0.R | 149 +- arfima-1.4-0/arfima/R/arfimaFit.R | 1285 ++++++++++---------- arfima-1.4-0/arfima/R/arfima_function.R |only arfima-1.4-0/arfima/R/getssq.R | 70 - arfima-1.4-0/arfima/R/iARMA.R | 1294 ++++++++++---------- arfima-1.4-0/arfima/R/lARFIMA.R | 187 +- arfima-1.4-0/arfima/R/lARFIMAwTF.R | 217 ++- arfima-1.4-0/arfima/R/plot.predARFIMA.R | 282 ++-- arfima-1.4-0/arfima/R/predict.ARFIMA.R | 770 ++++++------ arfima-1.4-0/arfima/R/sims.R | 370 +++-- arfima-1.4-0/arfima/R/tacf.R | 1277 +++++++++++--------- arfima-1.4-0/arfima/R/utilityfcns.R | 1531 ++++++++++++++---------- arfima-1.4-0/arfima/R/zzz.R |only arfima-1.4-0/arfima/README.md |only arfima-1.4-0/arfima/man/AIC.arfima.Rd | 97 - arfima-1.4-0/arfima/man/ARToPacf.Rd | 65 - arfima-1.4-0/arfima/man/Boot.Rd | 60 arfima-1.4-0/arfima/man/Boot.arfima.Rd | 93 - arfima-1.4-0/arfima/man/IdentInvertQ.Rd | 199 +-- arfima-1.4-0/arfima/man/PacfToAR.Rd | 66 - arfima-1.4-0/arfima/man/SeriesJ.Rd | 52 arfima-1.4-0/arfima/man/arfima-package.Rd | 179 +- arfima-1.4-0/arfima/man/arfima.Rd | 336 ++--- arfima-1.4-0/arfima/man/arfima.sim.Rd | 191 +- arfima-1.4-0/arfima/man/arfima0.Rd | 86 - arfima-1.4-0/arfima/man/arfimachanges.Rd |only arfima-1.4-0/arfima/man/bestModes.Rd | 93 - arfima-1.4-0/arfima/man/coef.arfima.Rd | 92 - arfima-1.4-0/arfima/man/distance.Rd | 95 - arfima-1.4-0/arfima/man/fitted.arfima.Rd | 104 - arfima-1.4-0/arfima/man/iARFIMA.Rd | 162 +- arfima-1.4-0/arfima/man/lARFIMA.Rd | 208 +-- arfima-1.4-0/arfima/man/lARFIMAwTF.Rd | 194 +-- arfima-1.4-0/arfima/man/logLik.arfima.Rd | 77 - arfima-1.4-0/arfima/man/plot.predarfima.Rd | 141 +- arfima-1.4-0/arfima/man/plot.tacvf.Rd | 152 +- arfima-1.4-0/arfima/man/predict.arfima.Rd | 173 +- arfima-1.4-0/arfima/man/print.arfima.Rd | 68 - arfima-1.4-0/arfima/man/print.predarfima.Rd | 99 - arfima-1.4-0/arfima/man/print.summary.arfima.Rd | 102 - arfima-1.4-0/arfima/man/print.tacvf.Rd | 62 arfima-1.4-0/arfima/man/removeMode.Rd | 90 - arfima-1.4-0/arfima/man/residuals.arfima.Rd |only arfima-1.4-0/arfima/man/summary.arfima.Rd | 105 - arfima-1.4-0/arfima/man/tacfplot.Rd | 147 +- arfima-1.4-0/arfima/man/tacvf.Rd | 94 - arfima-1.4-0/arfima/man/tacvfARFIMA.Rd | 195 +-- arfima-1.4-0/arfima/man/tmpyr.Rd | 180 +- arfima-1.4-0/arfima/man/vcov.arfima.Rd | 137 +- arfima-1.4-0/arfima/man/weed.Rd | 121 - arfima-1.4-0/arfima/src/arfima_init.c |only 61 files changed, 7061 insertions(+), 7110 deletions(-)
Title: Statistical Catch-at-Age Plotting Environment
Description: Import, plot, and diagnose results from statistical
catch-at-age models, used in fisheries stock assessment.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>
Diff between scape versions 2.2-0 dated 2014-03-12 and 2.3-1 dated 2017-06-20
DESCRIPTION | 18 - MD5 | 132 ++++--- NAMESPACE | 4 NEWS | 751 ++++++++++++++++++++++----------------------- R/estN.R | 127 +++---- R/estSigmaI.R | 113 +++--- R/estSigmaR.R | 33 - R/getN.R | 64 +-- R/getSigmaI.R | 66 ++- R/getSigmaR.R | 27 - R/importADCAM.R |only R/importCol.R | 708 +++++++++++++++++++++++------------------- R/importMCMC.R | 247 +++++++------- R/importProj.R | 173 +++++----- R/iterate.R | 247 +++++++------- R/plotB.R | 194 ++++++----- R/plotCA.R | 297 +++++++++-------- R/plotCL.R | 300 +++++++++-------- R/plotIndex.R | 223 ++++++------- R/plotLA.R | 215 +++++++----- R/plotN.R | 308 +++++++++--------- R/plotSel.R | 195 ++++++----- build/vignette.rds |binary data/datalist | 13 data/x.cod.rda |binary data/x.ling.rda |binary data/x.oreo.rda |binary data/x.saithe.rda |only data/x.sbw.rda |binary data/xmcmc.rda |binary data/xproj.rda |binary inst/doc/dsc-vignette.Rnw | 20 - inst/doc/dsc-vignette.pdf |binary inst/doc/gallery.R | 384 +++++++++++------------ inst/doc/gallery.Rnw | 380 +++++++++++----------- inst/doc/gallery.pdf |binary inst/doc/mymodel.Rnw | 288 ++++++++--------- inst/doc/mymodel.pdf |binary inst/example/saithe |only man/estN.Rd | 326 +++++++++---------- man/estSigmaI.Rd | 250 +++++++------- man/estSigmaR.Rd | 140 ++++---- man/getN.Rd | 106 +++--- man/getSigmaI.Rd | 106 +++--- man/getSigmaR.Rd | 90 ++--- man/importADCAM.Rd |only man/importCol.Rd | 148 ++++---- man/importMCMC.Rd | 138 +++----- man/importProj.Rd | 122 +++---- man/iterate.Rd | 116 +++--- man/plotB.Rd | 174 +++++----- man/plotCA.Rd | 216 ++++++------ man/plotCL.Rd | 202 +++++------- man/plotIndex.Rd | 184 +++++------ man/plotLA.Rd | 192 +++++------ man/plotN.Rd | 188 +++++------ man/plotSel.Rd | 162 ++++----- man/scape-package.Rd | 159 ++++----- man/x.cod.Rd | 173 +++++----- man/x.ling.Rd | 169 ++++------ man/x.oreo.Rd | 178 +++++----- man/x.saithe.Rd |only man/x.sbw.Rd | 169 ++++------ man/xmcmc.Rd | 121 +++---- man/xproj.Rd | 113 +++--- vignettes/dsc-vignette.Rnw | 20 - vignettes/gallery.Rnw | 380 +++++++++++----------- vignettes/mymodel.Rnw | 288 ++++++++--------- 68 files changed, 5149 insertions(+), 5008 deletions(-)
Title: Interface Between GMT Map-Making Software and R
Description: Interface between the GMT map-making software and R, enabling the
user to manipulate geographic data within R and call GMT commands to draw and
annotate maps in postscript format. The gmt package is about interactive data
analysis, rapidly visualizing subsets and summaries of geographic data, while
performing statistical analysis in the R console.
Author: Arni Magnusson [aut, cre]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>
Diff between gmt versions 1.2-0 dated 2014-03-12 and 2.0-0 dated 2017-06-20
DESCRIPTION | 27 ++-- MD5 | 76 +++++------ NAMESPACE | 2 NEWS | 299 +++++++++++++++++++++++----------------------- R/deg2num.R | 82 ++++++------ R/geodist.R | 40 ++---- R/gmt.R | 39 ++---- R/gmt.system.R | 28 ++-- R/num2deg.R | 94 +++++++------- R/psbar.R | 104 ++++++++-------- R/psclose.R | 54 +++----- R/pscoast.R | 19 +- R/pstext.R | 23 +-- R/psxy.R | 23 +-- R/r2gmt.R | 44 +++--- data/demo.bar.rda |binary data/demo.coast.rda |binary data/demo.par.rda |binary data/demo.text.rda |binary data/demo.xy.rda |binary inst/example/example.bat | 17 +- inst/example/example.sh | 16 +- inst/example/readme.txt | 23 +-- inst/example/tmp/bar.gmt | 38 ++--- inst/example/tmp/text.gmt | 14 +- inst/example/tmp/xy.gmt | 8 - man/deg2num.Rd | 66 ++++------ man/geodist.Rd | 96 +++++++------- man/gmt-package.Rd | 123 ++++++++---------- man/gmt.Rd | 126 +++++++++---------- man/gmt.demo.Rd | 129 +++++++++---------- man/gmt.system.Rd | 73 +++++------ man/num2deg.Rd | 90 ++++++------- man/psbar.Rd | 175 +++++++++++++------------- man/psclose.Rd | 110 +++++++--------- man/pscoast.Rd | 112 +++++++---------- man/pstext.Rd | 125 +++++++++---------- man/psxy.Rd | 130 +++++++++----------- man/r2gmt.Rd | 95 +++++++------- 39 files changed, 1216 insertions(+), 1304 deletions(-)
Title: Interactive Tutorials for R
Description: Create interactive tutorials using R Markdown. Use a combination
of narrative, figures, videos, exercises, and quizzes to create self-paced
tutorials for learning about R and R packages.
Author: JJ Allaire [aut, cre],
RStudio, Inc. [cph],
Ajax.org B.V. [ctb, cph] (Ace library),
Zeno Rocha [ctb, cph] (clipboard.js library),
Nick Payne [ctb, cph] (Bootbox library),
Julie Cameron [ctb] (SlickQuiz library),
Quicken Loans [cph] (SlickQuiz library),
Mozilla [ctb, cph] (localforage library)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between learnr versions 0.8 dated 2017-05-08 and 0.9 dated 2017-06-20
DESCRIPTION | 8 - MD5 | 26 ++-- NAMESPACE | 4 R/exercise.R | 17 ++ R/html-dependencies.R | 2 R/http-handlers.R | 9 + R/knitr-hooks.R | 6 - R/options.R | 5 R/package.R | 2 R/storage.R | 4 inst/lib/localforage/localforage.min.js | 8 - inst/lib/tutorial/tutorial-diagnostics.js | 17 ++ inst/lib/tutorial/tutorial.js | 177 +++++++++++++++++++++++------- man/tutorial_options.Rd | 5 14 files changed, 221 insertions(+), 69 deletions(-)
Title: Statistical Analysis of Chemistry, Histopathology, and
Reproduction Endpoints Including Repeated Measures and
Multi-Generation Studies
Description: A front end for the statistical analyses involved in the tier II endocrine
disruptor screening program. The analyses available to this package are:
Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS),
a Standard Cochran-Armitage test for trend By Slices (SCABS),
mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test
Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated
measures ANOVA, and Dunnett test.
Author: Joe Swintek [aut, cre],
Kevin Flynn [ctb],
Jon Haselman [ctb]
Maintainer: Joe Swintek <swintek.joe@epa.gov>
Diff between StatCharrms versions 0.90.3 dated 2017-05-16 and 0.90.4 dated 2017-06-20
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/Run.StatCharrms.R | 18 +++++++++--------- inst/CITATION | 6 +++--- inst/doc/StatCharrms.pdf |binary 5 files changed, 21 insertions(+), 21 deletions(-)
Title: Functions to Compute Chemical Reaction Similarity
Description: Methods to compute chemical similarity between two or more reactions and molecules. Allows masking of chemical substructures for weighted similarity computations. Uses packages 'rCDK' and 'fingerprint' for cheminformatics functionality.
Author: Varun Giri [aut, cre]
Maintainer: Varun Giri <varungiri@gmail.com>
Diff between RxnSim versions 1.0.1 dated 2015-04-08 and 1.0.2 dated 2017-06-20
CHANGELOG | 50 +++++---- DESCRIPTION | 8 - MD5 | 8 - NEWS | 1 R/RxnSimMask.R | 302 ++++++++++++++++++++++++++++----------------------------- 5 files changed, 188 insertions(+), 181 deletions(-)
Title: IUCN Redlisting Tools
Description: Includes algorithms to facilitate the assessment of extinction
risk of species according to the IUCN (International Union for Conservation of
Nature, see <http://www.iucn.org> for more information) red list criteria.
Author: Pedro Cardoso
Maintainer: Pedro Cardoso <pedro.cardoso@helsinki.fi>
Diff between red versions 1.0.1 dated 2017-04-12 and 1.1.0 dated 2017-06-20
DESCRIPTION | 10 ++--- MD5 | 13 ++++--- NAMESPACE | 1 R/red.R | 96 ++++++++++++++++++++++++++++++++++++++++++++------------ man/kml.Rd | 9 ++++- man/map.easy.Rd | 10 +++-- man/map.sdm.Rd | 4 +- man/move.Rd |only 8 files changed, 106 insertions(+), 37 deletions(-)
Title: A Fast Implementation of Random Forests
Description: A fast implementation of Random Forests, particularly suited for high
dimensional data. Ensembles of classification, regression, survival and
probability prediction trees are supported. Data from genome-wide association
studies can be analyzed efficiently. In addition to data frames, datasets of
class 'gwaa.data' (R package 'GenABEL') can be directly analyzed.
Author: Marvin N. Wright
Maintainer: Marvin N. Wright <cran@wrig.de>
Diff between ranger versions 0.7.0 dated 2017-03-31 and 0.8.0 dated 2017-06-20
ranger-0.7.0/ranger/src/version.h |only ranger-0.8.0/ranger/DESCRIPTION | 16 ranger-0.8.0/ranger/MD5 | 154 ++++----- ranger-0.8.0/ranger/NAMESPACE | 1 ranger-0.8.0/ranger/NEWS | 6 ranger-0.8.0/ranger/R/RcppExports.R | 4 ranger-0.8.0/ranger/R/csrf.R | 1 ranger-0.8.0/ranger/R/formula.R | 5 ranger-0.8.0/ranger/R/getTerminalNodeIDs.R | 1 ranger-0.8.0/ranger/R/holdoutRF.R | 1 ranger-0.8.0/ranger/R/importance.R | 25 - ranger-0.8.0/ranger/R/predict.R | 132 ++++++- ranger-0.8.0/ranger/R/predictions.R | 5 ranger-0.8.0/ranger/R/print.R | 1 ranger-0.8.0/ranger/R/ranger.R | 101 +++-- ranger-0.8.0/ranger/R/timepoints.R | 3 ranger-0.8.0/ranger/man/csrf.Rd | 7 ranger-0.8.0/ranger/man/getTerminalNodeIDs.Rd | 1 ranger-0.8.0/ranger/man/holdoutRF.Rd | 7 ranger-0.8.0/ranger/man/importance.ranger.Rd | 9 ranger-0.8.0/ranger/man/importance_pvalues.Rd | 7 ranger-0.8.0/ranger/man/parse.formula.Rd | 1 ranger-0.8.0/ranger/man/predict.ranger.Rd | 14 ranger-0.8.0/ranger/man/predict.ranger.forest.Rd | 18 - ranger-0.8.0/ranger/man/predictions.ranger.Rd | 7 ranger-0.8.0/ranger/man/predictions.ranger.prediction.Rd | 9 ranger-0.8.0/ranger/man/print.ranger.Rd | 7 ranger-0.8.0/ranger/man/print.ranger.forest.Rd | 1 ranger-0.8.0/ranger/man/print.ranger.prediction.Rd | 1 ranger-0.8.0/ranger/man/ranger.Rd | 9 ranger-0.8.0/ranger/man/timepoints.ranger.Rd | 9 ranger-0.8.0/ranger/man/timepoints.ranger.prediction.Rd | 7 ranger-0.8.0/ranger/src/Data.cpp | 22 - ranger-0.8.0/ranger/src/Data.h | 26 - ranger-0.8.0/ranger/src/DataChar.cpp | 9 ranger-0.8.0/ranger/src/DataChar.h | 14 ranger-0.8.0/ranger/src/DataDouble.cpp | 2 ranger-0.8.0/ranger/src/DataDouble.h | 12 ranger-0.8.0/ranger/src/DataFloat.cpp | 9 ranger-0.8.0/ranger/src/DataFloat.h | 15 ranger-0.8.0/ranger/src/DataSparse.cpp |only ranger-0.8.0/ranger/src/DataSparse.h |only ranger-0.8.0/ranger/src/Forest.cpp | 8 ranger-0.8.0/ranger/src/Forest.h | 2 ranger-0.8.0/ranger/src/ForestClassification.cpp | 5 ranger-0.8.0/ranger/src/ForestClassification.h | 2 ranger-0.8.0/ranger/src/ForestProbability.cpp | 15 ranger-0.8.0/ranger/src/ForestProbability.h | 2 ranger-0.8.0/ranger/src/ForestRegression.cpp | 7 ranger-0.8.0/ranger/src/ForestRegression.h | 2 ranger-0.8.0/ranger/src/ForestSurvival.cpp | 4 ranger-0.8.0/ranger/src/ForestSurvival.h | 2 ranger-0.8.0/ranger/src/RcppExports.cpp | 11 ranger-0.8.0/ranger/src/Tree.cpp | 2 ranger-0.8.0/ranger/src/Tree.h | 2 ranger-0.8.0/ranger/src/TreeClassification.cpp | 16 ranger-0.8.0/ranger/src/TreeClassification.h | 2 ranger-0.8.0/ranger/src/TreeProbability.cpp | 16 ranger-0.8.0/ranger/src/TreeProbability.h | 2 ranger-0.8.0/ranger/src/TreeRegression.cpp | 16 ranger-0.8.0/ranger/src/TreeRegression.h | 4 ranger-0.8.0/ranger/src/TreeSurvival.cpp | 16 ranger-0.8.0/ranger/src/TreeSurvival.h | 2 ranger-0.8.0/ranger/src/globals.h | 2 ranger-0.8.0/ranger/src/rangerCpp.cpp | 44 +- ranger-0.8.0/ranger/src/ranger_init.c | 4 ranger-0.8.0/ranger/src/utility.cpp | 187 ----------- ranger-0.8.0/ranger/src/utility.h | 63 --- ranger-0.8.0/ranger/tests/testthat/test_classification.R | 58 +++ ranger-0.8.0/ranger/tests/testthat/test_extratrees.R | 3 ranger-0.8.0/ranger/tests/testthat/test_importance.R | 80 +++- ranger-0.8.0/ranger/tests/testthat/test_importance_pvalues.R | 7 ranger-0.8.0/ranger/tests/testthat/test_predict.R | 93 +++++ ranger-0.8.0/ranger/tests/testthat/test_print.R | 2 ranger-0.8.0/ranger/tests/testthat/test_ranger.R | 2 ranger-0.8.0/ranger/tests/testthat/test_regression.R | 39 ++ ranger-0.8.0/ranger/tests/testthat/test_sparse.R |only ranger-0.8.0/ranger/tests/testthat/test_splitweights.R | 5 ranger-0.8.0/ranger/tests/testthat/test_survival.R | 16 ranger-0.8.0/ranger/tests/testthat/test_unordered.R | 26 + 80 files changed, 857 insertions(+), 591 deletions(-)
Title: Most Likely Transformations: Documentation and Regression Tests
Description: Additional documentation, a package vignette and
regression tests for package mlt.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt.docreg versions 0.1-5 dated 2017-04-05 and 0.2-0 dated 2017-06-20
DESCRIPTION | 12 ++++++------ MD5 | 38 +++++++++++++++++++------------------- build/vignette.rds |binary inst/NEWS.Rd | 11 +++++++++++ inst/doc/mlt.R | 2 +- inst/doc/mlt.Rnw | 8 ++++---- inst/doc/mlt.pdf |binary tests/AFT-Ex.R | 1 - tests/AFT-Ex.Rout.save | 16 +++++++--------- tests/GBSG2.R | 1 - tests/GBSG2.Rout.save | 6 ++---- tests/faithful.R | 1 - tests/faithful.Rout.save | 6 ++---- tests/timedep_covar.Rout.save | 4 ++-- tests/truncreg-Ex.R | 1 - tests/truncreg-Ex.Rout.save | 13 ++----------- tests/udist-Ex.R | 1 - tests/udist-Ex.Rout.save | 6 ++---- vignettes/mlt.Rnw | 8 ++++---- vignettes/mlt.bib | 13 ++++++++++--- 20 files changed, 72 insertions(+), 76 deletions(-)
Title: Create American Psychological Association (APA) Style Tables
Description: A common task faced by researchers is the creation of APA style
(i.e., American Psychological Association style) tables from statistical
output. In R a large number of function calls are often needed to obtain all of
the desired information for a single APA style table. As well, the process of
manually creating APA style tables in a word processor is prone to transcription
errors. This package creates Word files (.doc files) containing APA style tables
for several types of analyses. Using this package minimizes transcription errors
and reduces the number commands needed by the user.
Author: David Stanley [aut, cre]
Maintainer: David Stanley <dstanley@uoguelph.ca>
Diff between apaTables versions 1.5.0 dated 2017-03-25 and 1.5.1 dated 2017-06-20
DESCRIPTION | 13 ++++------ MD5 | 48 +++++++++++++++++++------------------- R/apaANOVAFTable.R | 2 - R/apaANOVATable2way.R | 4 +-- R/apaTables.R | 12 ++++----- R/rtfMakeDocument.R | 16 ++++++------ R/rtfMakeTable.R | 16 ++++++------ README.md | 31 +++++++++++++++--------- build/vignette.rds |binary inst/doc/apaTables.Rmd | 10 +++---- inst/doc/apaTables.html | 18 +++++++------- man/Eysenck.Rd | 1 man/album.Rd | 1 man/apa.1way.table.Rd | 1 man/apa.2way.table.Rd | 3 -- man/apa.aov.table.Rd | 1 man/apa.cor.table.Rd | 1 man/apa.d.table.Rd | 1 man/apa.reg.table.Rd | 1 man/apaTables.Rd | 5 +-- man/fidler_thompson.Rd | 1 man/get.ci.partial.eta.squared.Rd | 1 man/goggles.Rd | 1 man/viagra.Rd | 1 vignettes/apaTables.Rmd | 10 +++---- 25 files changed, 96 insertions(+), 103 deletions(-)
Title: Managing Animal Movement Data with 'PostGIS' and R
Description: Integrates R and the 'PostgreSQL/PostGIS' database
system to build and manage animal trajectory (movement) data sets.
The package relies on 'ltraj' objects from the R package 'adehabitatLT',
building the analogous 'pgtraj' data structure in 'PostGIS'. Functions
allow users to seamlessly transfer between 'ltraj' and 'pgtraj', as
well as build new 'pgtraj' directly from location data stored in the
database.
Author: Balázs Dukai [aut] (Package creator during Google Summer of Code 2016),
Mathieu Basille [aut],
David Bucklin [aut, cre],
Clément Calenge [ctb]
Maintainer: David Bucklin <dbucklin@ufl.edu>
Diff between rpostgisLT versions 0.4.0 dated 2016-11-01 and 0.5.0 dated 2017-06-20
rpostgisLT-0.4.0/rpostgisLT/R/pgTrajDrop.R |only rpostgisLT-0.4.0/rpostgisLT/R/pgTrajSchema.R |only rpostgisLT-0.4.0/rpostgisLT/R/pgTrajVacuum.R |only rpostgisLT-0.4.0/rpostgisLT/man/pgTrajDrop.Rd |only rpostgisLT-0.4.0/rpostgisLT/man/pgTrajSchema.Rd |only rpostgisLT-0.4.0/rpostgisLT/man/pgTrajVacuum.Rd |only rpostgisLT-0.5.0/rpostgisLT/DESCRIPTION | 16 rpostgisLT-0.5.0/rpostgisLT/MD5 | 95 rpostgisLT-0.5.0/rpostgisLT/NAMESPACE | 28 rpostgisLT-0.5.0/rpostgisLT/NEWS | 111 rpostgisLT-0.5.0/rpostgisLT/R/as_pgtraj.R | 678 ++-- rpostgisLT-0.5.0/rpostgisLT/R/data.R |only rpostgisLT-0.5.0/rpostgisLT/R/ltraj2pgtraj.R | 453 +- rpostgisLT-0.5.0/rpostgisLT/R/pgtraj2ltraj.R | 245 - rpostgisLT-0.5.0/rpostgisLT/R/pgtrajDrop.R |only rpostgisLT-0.5.0/rpostgisLT/R/pgtrajSchema.R |only rpostgisLT-0.5.0/rpostgisLT/R/pgtrajVacuum.R |only rpostgisLT-0.5.0/rpostgisLT/R/rpostgisLT-package.R | 44 rpostgisLT-0.5.0/rpostgisLT/R/utils.R | 2572 ++++++++--------- rpostgisLT-0.5.0/rpostgisLT/README.md | 256 - rpostgisLT-0.5.0/rpostgisLT/build/vignette.rds |binary rpostgisLT-0.5.0/rpostgisLT/data |only rpostgisLT-0.5.0/rpostgisLT/inst/CITATION |only rpostgisLT-0.5.0/rpostgisLT/inst/doc/data-model.R | 30 rpostgisLT-0.5.0/rpostgisLT/inst/doc/data-model.Rmd | 364 +- rpostgisLT-0.5.0/rpostgisLT/inst/doc/data-model.html | 884 ++--- rpostgisLT-0.5.0/rpostgisLT/inst/doc/use-cases.R | 276 - rpostgisLT-0.5.0/rpostgisLT/inst/doc/use-cases.Rmd | 598 +-- rpostgisLT-0.5.0/rpostgisLT/inst/doc/use-cases.html | 548 +-- rpostgisLT-0.5.0/rpostgisLT/inst/sql/insert_ltraj.sql | 256 - rpostgisLT-0.5.0/rpostgisLT/inst/sql/traj_schema.sql | 453 +- rpostgisLT-0.5.0/rpostgisLT/man/as_pgtraj.Rd | 273 - rpostgisLT-0.5.0/rpostgisLT/man/getPgtrajWithInfo.Rd | 45 rpostgisLT-0.5.0/rpostgisLT/man/is_blank.Rd | 43 rpostgisLT-0.5.0/rpostgisLT/man/ld_opt.Rd | 75 rpostgisLT-0.5.0/rpostgisLT/man/ltraj2pgtraj.Rd | 112 rpostgisLT-0.5.0/rpostgisLT/man/pgTrajDB2TempT.Rd | 125 rpostgisLT-0.5.0/rpostgisLT/man/pgTrajTempT.Rd | 63 rpostgisLT-0.5.0/rpostgisLT/man/pgTrajViewParams.Rd | 79 rpostgisLT-0.5.0/rpostgisLT/man/pgTrajViewStepGeom.Rd | 53 rpostgisLT-0.5.0/rpostgisLT/man/pgtraj2ltraj.Rd | 64 rpostgisLT-0.5.0/rpostgisLT/man/pgtrajDrop.Rd |only rpostgisLT-0.5.0/rpostgisLT/man/pgtrajSchema.Rd |only rpostgisLT-0.5.0/rpostgisLT/man/pgtrajVacuum.Rd |only rpostgisLT-0.5.0/rpostgisLT/man/roe_gps_data.Rd |only rpostgisLT-0.5.0/rpostgisLT/man/rpostgisLT.Rd | 51 rpostgisLT-0.5.0/rpostgisLT/man/test_input.Rd | 77 rpostgisLT-0.5.0/rpostgisLT/man/trajSummaryViews.Rd | 41 rpostgisLT-0.5.0/rpostgisLT/man/writeInfoFromDB.Rd | 71 rpostgisLT-0.5.0/rpostgisLT/man/writeInfoFromLtraj.Rd | 55 rpostgisLT-0.5.0/rpostgisLT/vignettes/data-model.Rmd | 364 +- rpostgisLT-0.5.0/rpostgisLT/vignettes/fig/UC1.di | 4 rpostgisLT-0.5.0/rpostgisLT/vignettes/fig/UC1.notation | 924 +++--- rpostgisLT-0.5.0/rpostgisLT/vignettes/fig/UC1.uml | 88 rpostgisLT-0.5.0/rpostgisLT/vignettes/use-cases.Rmd | 598 +-- 55 files changed, 5581 insertions(+), 5531 deletions(-)
Title: Antares Visualizations
Description: Visualize results generated by Antares, a powerful software
developed by RTE to simulate and study electric power systems
(more information about Antares here: <https://antares.rte-france.com>).
This package provides functions that create interactive charts to help
Antares users visually explore the results of their simulations.
Author: Francois Guillem [aut, cre],
Jalal-Edine ZAWAM [ctb],
RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between antaresViz versions 0.9 dated 2017-06-01 and 0.10 dated 2017-06-20
antaresViz-0.10/antaresViz/DESCRIPTION | 10 antaresViz-0.10/antaresViz/MD5 | 75 +++--- antaresViz-0.10/antaresViz/NAMESPACE | 2 antaresViz-0.10/antaresViz/NEWS | 13 + antaresViz-0.10/antaresViz/R/get_data_for_comp.R |only antaresViz-0.10/antaresViz/R/leafletDragPoints.R | 4 antaresViz-0.10/antaresViz/R/map.R | 197 +++++++++-------- antaresViz-0.10/antaresViz/R/map_helpers.R | 28 -- antaresViz-0.10/antaresViz/R/map_layout.R | 32 -- antaresViz-0.10/antaresViz/R/map_options.R | 35 +-- antaresViz-0.10/antaresViz/R/plot.R | 75 +----- antaresViz-0.10/antaresViz/R/stack.R | 4 antaresViz-0.10/antaresViz/R/stack_exchanges.R | 202 +++++++++--------- antaresViz-0.10/antaresViz/R/stack_prod.R | 156 ++++++++----- antaresViz-0.10/antaresViz/inst/htmlwidgets |only antaresViz-0.10/antaresViz/man/exchangesStack.Rd | 29 ++ antaresViz-0.10/antaresViz/man/plot.mapLayout.Rd | 30 -- antaresViz-0.10/antaresViz/man/plotMap.Rd | 19 + antaresViz-0.10/antaresViz/man/plotMapOptions.Rd | 30 +- antaresViz-0.10/antaresViz/man/prodStack.Rd | 29 ++ antaresViz-0.10/antaresViz/man/tsLegend.Rd | 2 antaresViz-0.10/antaresViz/man/tsPlot.Rd |only antaresViz-0.9/antaresViz/inst/leafletDragPoints.js |only antaresViz-0.9/antaresViz/inst/leafletDragPoints.yaml |only antaresViz-0.9/antaresViz/inst/lib |only antaresViz-0.9/antaresViz/man/plot.antaresData.Rd |only 26 files changed, 510 insertions(+), 462 deletions(-)
Title: Functions to Make Surveys Processing Easier
Description: Set of functions to make the processing and analysis of
surveys easier : interactive shiny apps and addins for data recoding,
contingency tables, dataset metadata handling, and several convenience
functions.
Author: Julien Barnier [aut, cre],
François Briatte [aut],
Joseph Larmarange [aut]
Maintainer: Julien Barnier <julien.barnier@ens-lyon.fr>
Diff between questionr versions 0.6.0 dated 2017-03-21 and 0.6.1 dated 2017-06-20
DESCRIPTION | 19 ++-- MD5 | 28 +++--- NEWS | 15 ++- R/icut.R | 2 R/irec.R | 211 ++++++++++++++++++++++++++++++++++++++++++++++-- R/tables.R | 6 - build |only data/fecondite.RData |binary data/fertility.RData |binary data/happy.RData |binary data/hdv2003.RData |binary data/rp2012.RData |binary data/rp99.RData |binary inst/doc |only inst/rstudio/addins.dcf | 4 vignettes |only 16 files changed, 252 insertions(+), 33 deletions(-)
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Wouter Thielen [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between quantmod versions 0.4-9 dated 2017-05-29 and 0.4-10 dated 2017-06-20
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- R/Defaults.R | 4 +++- R/adjustOHLC.R | 4 ++-- R/getDividends.R | 2 +- R/getSymbols.R | 11 ++++++++--- R/quantmod.R | 6 +++++- man/adjustOHLC.Rd | 6 +++--- man/quantmod-package.Rd | 4 ++-- tests |only 10 files changed, 37 insertions(+), 25 deletions(-)
Title: Composite Indicators Functions
Description: Contains several functions to enhance approaches to the Composite Indicators methods, focusing, in particular, on the normalisation and weighting-aggregation steps.
Author: Francesco Vidoli, Elisa Fusco
Maintainer: Francesco Vidoli <fvidoli@gmail.com>
Diff between Compind versions 1.1.2 dated 2016-06-27 and 1.2 dated 2017-06-20
Compind-1.1.2/Compind/R/ci_bod_vrs.R |only Compind-1.1.2/Compind/R/ci_mean_geom.R |only Compind-1.1.2/Compind/man/ci_bod_vrs.Rd |only Compind-1.1.2/Compind/man/ci_mean_geom.Rd |only Compind-1.2/Compind/DESCRIPTION | 12 - Compind-1.2/Compind/MD5 | 42 +++-- Compind-1.2/Compind/NAMESPACE | 4 Compind-1.2/Compind/NEWS | 17 ++ Compind-1.2/Compind/R/ci_bod_constr.R |only Compind-1.2/Compind/R/ci_generalized_mean.R |only Compind-1.2/Compind/R/ci_geom_bod_intertemp.R |only Compind-1.2/Compind/R/ci_geom_gen.R |only Compind-1.2/Compind/build/vignette.rds |binary Compind-1.2/Compind/inst/CITATION | 2 Compind-1.2/Compind/inst/doc/Compind_vignette.pdf |binary Compind-1.2/Compind/inst/doc/Compind_vignette.pdf.asis | 7 Compind-1.2/Compind/man/Compind-package.Rd | 118 ++++++---------- Compind-1.2/Compind/man/EU_2020.Rd | 4 Compind-1.2/Compind/man/EU_NUTS1.Rd | 5 Compind-1.2/Compind/man/ci_bod.Rd | 10 - Compind-1.2/Compind/man/ci_bod_constr.Rd |only Compind-1.2/Compind/man/ci_bod_dir.Rd | 78 +++++----- Compind-1.2/Compind/man/ci_bod_var_w.Rd | 2 Compind-1.2/Compind/man/ci_factor.Rd | 2 Compind-1.2/Compind/man/ci_generalized_mean.Rd |only Compind-1.2/Compind/man/ci_geom_bod_intertemp.Rd |only Compind-1.2/Compind/man/ci_geom_gen.Rd |only Compind-1.2/Compind/vignettes/Compind_vignette.pdf.asis | 7 28 files changed, 147 insertions(+), 163 deletions(-)
Title: Clustering of Weighted Data
Description: Clusters state sequences and weighted data. It provides an optimized weighted PAM algorithm as well as functions for aggregating replicated cases, computing cluster quality measures for a range of clustering solutions and plotting clusters of state sequences.
Author: Matthias Studer [aut, cre]
Maintainer: Matthias Studer <matthias.studer@unige.ch>
Diff between WeightedCluster versions 1.2 dated 2014-01-16 and 1.2-1 dated 2017-06-20
DESCRIPTION | 15 - MD5 | 35 +- NAMESPACE | 17 - NEWS | 67 ++-- R/as.seqtree.R | 238 ++++++++-------- R/clusterquality.R | 27 + R/kmedoids.R | 7 R/kmedrange.R | 509 ++++++++++++++++++------------------ R/seqclustname.R | 50 +-- R/zzz.R | 6 build/vignette.rds |binary inst/doc/WeightedCluster.R | 125 ++------ inst/doc/WeightedCluster.pdf |binary inst/doc/WeightedClusterFR.R | 125 ++------ inst/doc/WeightedClusterFR.pdf |binary inst/doc/WeightedClusterPreview.R | 52 +-- inst/doc/WeightedClusterPreview.pdf |binary src/cluster.cpp | 9 src/init.c |only 19 files changed, 597 insertions(+), 685 deletions(-)
More information about WeightedCluster at CRAN
Permanent link
Title: Estimating Time-Varying k-Order Mixed Graphical Models
Description: Estimation of k-Order time-varying Mixed Graphical Models and mixed VAR(p) models via elastic-net regularized neighborhood regression.
Author: Jonas Haslbeck
Maintainer: Jonas Haslbeck <jonashaslbeck@gmail.com>
Diff between mgm versions 1.2-0 dated 2017-05-26 and 1.2-1 dated 2017-06-20
DESCRIPTION | 8 - MD5 | 16 +-- NEWS | 3 R/lagData.R | 9 + R/mvar.R | 4 R/predict.mgm.R | 232 +++++++++++++++++++++++++++++---------------------- R/predictCore_stat.R | 23 +++-- man/mgm-package.Rd | 6 - man/predict.mgm.Rd | 4 9 files changed, 184 insertions(+), 121 deletions(-)
Title: Exploratory and Descriptive Event-Based Data Analysis
Description: Functions for exploratory and descriptive analysis of event based data. Provides methods for describing and selecting process data, and for preparing event log data for process mining. Builds on the S3-class for event logs implemented in the package 'bupaR'.
Author: Gert Janssenswillen [aut, cre], Marijke Swennen [ctb]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between edeaR versions 0.5.0 dated 2017-04-01 and 0.6.0 dated 2017-06-20
edeaR-0.5.0/edeaR/R/XES.r |only edeaR-0.5.0/edeaR/R/activity_type_frequence.R |only edeaR-0.5.0/edeaR/R/activity_type_frequence_case.R |only edeaR-0.5.0/edeaR/R/activity_type_frequency_activity.R |only edeaR-0.5.0/edeaR/R/activity_type_frequency_log.R |only edeaR-0.5.0/edeaR/R/activity_type_frequency_resource.R |only edeaR-0.5.0/edeaR/R/activity_type_frequency_resource_activity.R |only edeaR-0.5.0/edeaR/R/activity_type_frequency_trace.R |only edeaR-0.5.0/edeaR/R/case_attributes_from_xes.R |only edeaR-0.5.0/edeaR/R/datasets_documentation.R |only edeaR-0.5.0/edeaR/R/eventlog_from_xes.R |only edeaR-0.5.0/edeaR/R/number_of_traces_with_selfloop.R |only edeaR-0.5.0/edeaR/R/write_xes.R |only edeaR-0.5.0/edeaR/R/xes_parser.r |only edeaR-0.5.0/edeaR/data |only edeaR-0.5.0/edeaR/man/BPIC14_incident_case_attributes.Rd |only edeaR-0.5.0/edeaR/man/BPIC14_incident_log.Rd |only edeaR-0.5.0/edeaR/man/BPIC15_1.Rd |only edeaR-0.5.0/edeaR/man/BPIC15_1_imported.Rd |only edeaR-0.5.0/edeaR/man/case_attributes_from_xes.Rd |only edeaR-0.5.0/edeaR/man/csv_example.Rd |only edeaR-0.5.0/edeaR/man/eventlog_from_xes.Rd |only edeaR-0.5.0/edeaR/man/example_log.Rd |only edeaR-0.5.0/edeaR/man/number_of_traces_with_selfloop.Rd |only edeaR-0.5.0/edeaR/man/write_xes.Rd |only edeaR-0.6.0/edeaR/DESCRIPTION | 16 edeaR-0.6.0/edeaR/MD5 | 246 +++++----- edeaR-0.6.0/edeaR/NAMESPACE | 44 + edeaR-0.6.0/edeaR/R/activity_frequence_case.R |only edeaR-0.6.0/edeaR/R/activity_frequency.R |only edeaR-0.6.0/edeaR/R/activity_frequency_activity.R |only edeaR-0.6.0/edeaR/R/activity_frequency_log.R |only edeaR-0.6.0/edeaR/R/activity_frequency_trace.R |only edeaR-0.6.0/edeaR/R/activity_presence.R | 13 edeaR-0.6.0/edeaR/R/edeaR.R | 9 edeaR-0.6.0/edeaR/R/end_activities.R | 22 edeaR-0.6.0/edeaR/R/end_activities_activity.R | 10 edeaR-0.6.0/edeaR/R/end_activities_case.R | 12 edeaR-0.6.0/edeaR/R/end_activities_resource.R | 9 edeaR-0.6.0/edeaR/R/end_activities_resource_activity.R | 11 edeaR-0.6.0/edeaR/R/filter_activity.R | 36 + edeaR-0.6.0/edeaR/R/filter_activity_frequency.R | 38 + edeaR-0.6.0/edeaR/R/filter_activity_presence.R | 45 + edeaR-0.6.0/edeaR/R/filter_attributes.R |only edeaR-0.6.0/edeaR/R/filter_case.R | 29 + edeaR-0.6.0/edeaR/R/filter_endpoints.R | 63 ++ edeaR-0.6.0/edeaR/R/filter_precedence.R | 61 ++ edeaR-0.6.0/edeaR/R/filter_processing_time.R | 56 ++ edeaR-0.6.0/edeaR/R/filter_resource.R | 29 + edeaR-0.6.0/edeaR/R/filter_throughput_time.R | 54 ++ edeaR-0.6.0/edeaR/R/filter_time_period.R | 66 ++ edeaR-0.6.0/edeaR/R/filter_trace_frequency.R | 50 ++ edeaR-0.6.0/edeaR/R/filter_trace_frequency_percentile.R | 4 edeaR-0.6.0/edeaR/R/filter_trace_frequency_threshold.R | 4 edeaR-0.6.0/edeaR/R/filter_trace_length.R | 57 ++ edeaR-0.6.0/edeaR/R/filter_trim.R | 45 + edeaR-0.6.0/edeaR/R/idle_time.R | 25 - edeaR-0.6.0/edeaR/R/idle_time_log.R | 7 edeaR-0.6.0/edeaR/R/number_of_selfloops.R | 25 - edeaR-0.6.0/edeaR/R/plot.activity_frequency.R |only edeaR-0.6.0/edeaR/R/plot.activity_presence.R |only edeaR-0.6.0/edeaR/R/plot.end_activity.R |only edeaR-0.6.0/edeaR/R/plot.idle_time.R |only edeaR-0.6.0/edeaR/R/plot.processing_time.R |only edeaR-0.6.0/edeaR/R/plot.referral_matrix.R |only edeaR-0.6.0/edeaR/R/plot.resource_frequency.R |only edeaR-0.6.0/edeaR/R/plot.resource_involvement.R |only edeaR-0.6.0/edeaR/R/plot.resource_specialisation.R |only edeaR-0.6.0/edeaR/R/plot.start_activities.R |only edeaR-0.6.0/edeaR/R/plot.throughput_time.R |only edeaR-0.6.0/edeaR/R/plot.trace_coverage.R |only edeaR-0.6.0/edeaR/R/plot.trace_length.R |only edeaR-0.6.0/edeaR/R/print.activity_frequency.R |only edeaR-0.6.0/edeaR/R/print.idle_time.R |only edeaR-0.6.0/edeaR/R/print.processing_time.R |only edeaR-0.6.0/edeaR/R/print.throughput_time.R |only edeaR-0.6.0/edeaR/R/processing_time.R | 35 - edeaR-0.6.0/edeaR/R/processing_time_activity.R | 15 edeaR-0.6.0/edeaR/R/processing_time_log.R | 2 edeaR-0.6.0/edeaR/R/processing_time_resource.R | 10 edeaR-0.6.0/edeaR/R/processing_time_resource_activity.R | 11 edeaR-0.6.0/edeaR/R/processing_time_trace.R | 8 edeaR-0.6.0/edeaR/R/redo_repetitions_referral_matrix.R | 9 edeaR-0.6.0/edeaR/R/redo_selfloops_referral_matrix.R | 9 edeaR-0.6.0/edeaR/R/resource_frequency.R | 31 - edeaR-0.6.0/edeaR/R/resource_frequency_log.R | 2 edeaR-0.6.0/edeaR/R/resource_involvement.R | 17 edeaR-0.6.0/edeaR/R/resource_specialisation.R | 22 edeaR-0.6.0/edeaR/R/resource_specialisation_log.R | 12 edeaR-0.6.0/edeaR/R/rework_functions.R | 36 - edeaR-0.6.0/edeaR/R/start_activities.R | 27 - edeaR-0.6.0/edeaR/R/start_activities_activity.R | 12 edeaR-0.6.0/edeaR/R/start_activities_case.R | 12 edeaR-0.6.0/edeaR/R/start_activities_resource.R | 10 edeaR-0.6.0/edeaR/R/start_activities_resource_activity.R | 11 edeaR-0.6.0/edeaR/R/throughput_time.R | 13 edeaR-0.6.0/edeaR/R/throughput_time_case.R | 2 edeaR-0.6.0/edeaR/R/throughput_time_log.R | 2 edeaR-0.6.0/edeaR/R/trace_coverage.R | 19 edeaR-0.6.0/edeaR/R/trace_length.R | 20 edeaR-0.6.0/edeaR/R/trace_length_log.R | 2 edeaR-0.6.0/edeaR/R/utils.R | 4 edeaR-0.6.0/edeaR/man/activity_frequency.Rd | 6 edeaR-0.6.0/edeaR/man/activity_presence.Rd | 1 edeaR-0.6.0/edeaR/man/edeaR.Rd | 1 edeaR-0.6.0/edeaR/man/end_activities.Rd | 4 edeaR-0.6.0/edeaR/man/filter_activity.Rd | 4 edeaR-0.6.0/edeaR/man/filter_activity_frequency.Rd | 4 edeaR-0.6.0/edeaR/man/filter_activity_presence.Rd | 9 edeaR-0.6.0/edeaR/man/filter_attributes.Rd |only edeaR-0.6.0/edeaR/man/filter_case.Rd | 4 edeaR-0.6.0/edeaR/man/filter_endpoints.Rd | 4 edeaR-0.6.0/edeaR/man/filter_precedence.Rd | 9 edeaR-0.6.0/edeaR/man/filter_processing_time.Rd | 4 edeaR-0.6.0/edeaR/man/filter_resource.Rd | 4 edeaR-0.6.0/edeaR/man/filter_throughput_time.Rd | 4 edeaR-0.6.0/edeaR/man/filter_time_period.Rd | 7 edeaR-0.6.0/edeaR/man/filter_trace_frequency.Rd | 4 edeaR-0.6.0/edeaR/man/filter_trace_length.Rd | 4 edeaR-0.6.0/edeaR/man/filter_trim.Rd | 4 edeaR-0.6.0/edeaR/man/idle_time.Rd | 4 edeaR-0.6.0/edeaR/man/number_of_repetitions.Rd | 1 edeaR-0.6.0/edeaR/man/number_of_selfloops.Rd | 5 edeaR-0.6.0/edeaR/man/number_of_traces.Rd | 1 edeaR-0.6.0/edeaR/man/plot.activity_frequency.Rd |only edeaR-0.6.0/edeaR/man/plot.activity_presence.Rd |only edeaR-0.6.0/edeaR/man/plot.end_activities.Rd |only edeaR-0.6.0/edeaR/man/plot.idle_time.Rd |only edeaR-0.6.0/edeaR/man/plot.processing_time.Rd |only edeaR-0.6.0/edeaR/man/plot.referral_matrix.Rd |only edeaR-0.6.0/edeaR/man/plot.resource_frequency.Rd |only edeaR-0.6.0/edeaR/man/plot.resource_involvement.Rd |only edeaR-0.6.0/edeaR/man/plot.resource_specialisation.Rd |only edeaR-0.6.0/edeaR/man/plot.start_activities.Rd |only edeaR-0.6.0/edeaR/man/plot.throughput_time.Rd |only edeaR-0.6.0/edeaR/man/plot.trace_coverage.Rd |only edeaR-0.6.0/edeaR/man/plot.trace_length.Rd |only edeaR-0.6.0/edeaR/man/print.activity_frequency.Rd |only edeaR-0.6.0/edeaR/man/print.idle_time.Rd |only edeaR-0.6.0/edeaR/man/print.processing_time.Rd |only edeaR-0.6.0/edeaR/man/print.throughput_time.Rd |only edeaR-0.6.0/edeaR/man/processing_time.Rd | 10 edeaR-0.6.0/edeaR/man/redo_repetitions_referral_matrix.Rd | 1 edeaR-0.6.0/edeaR/man/redo_selfloops_referral_matrix.Rd | 1 edeaR-0.6.0/edeaR/man/reexports.Rd | 4 edeaR-0.6.0/edeaR/man/resource_frequency.Rd | 6 edeaR-0.6.0/edeaR/man/resource_involvement.Rd | 4 edeaR-0.6.0/edeaR/man/resource_specialisation.Rd | 4 edeaR-0.6.0/edeaR/man/size_of_repetitions.Rd | 1 edeaR-0.6.0/edeaR/man/size_of_selfloops.Rd | 1 edeaR-0.6.0/edeaR/man/start_activities.Rd | 4 edeaR-0.6.0/edeaR/man/throughput_time.Rd | 1 edeaR-0.6.0/edeaR/man/trace_coverage.Rd | 4 edeaR-0.6.0/edeaR/man/trace_length.Rd | 3 154 files changed, 1138 insertions(+), 433 deletions(-)
Title: MR Spectroscopy Analysis Tools
Description: Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data.
Author: Martin Wilson [cre, aut]
Maintainer: Martin Wilson <martin@pipegrep.co.uk>
Diff between spant versions 0.2.0 dated 2017-05-24 and 0.3.0 dated 2017-06-20
spant-0.2.0/spant/R/analysis.R |only spant-0.2.0/spant/R/analysis_display.R |only spant-0.2.0/spant/man/apply_water_scaling.Rd |only spant-0.3.0/spant/DESCRIPTION | 9 spant-0.3.0/spant/MD5 | 83 ++++--- spant-0.3.0/spant/NAMESPACE | 31 ++ spant-0.3.0/spant/NEWS.md | 10 spant-0.3.0/spant/R/amp_scaling.R |only spant-0.3.0/spant/R/batch_analysis.R | 134 +++++------ spant-0.3.0/spant/R/fit_display.R |only spant-0.3.0/spant/R/fitting.R |only spant-0.3.0/spant/R/image_reg.R | 176 +++++++-------- spant-0.3.0/spant/R/mol_parameters.R | 20 + spant-0.3.0/spant/R/mrs_data_display.R | 284 +++++++++++++++---------- spant-0.3.0/spant/R/mrs_data_io.R | 16 + spant-0.3.0/spant/R/mrs_data_proc.R | 148 ++++++++++--- spant-0.3.0/spant/R/pulse_sequences.R | 35 ++- spant-0.3.0/spant/R/qm_simulation.R | 21 + spant-0.3.0/spant/R/utils.R | 43 +++ spant-0.3.0/spant/inst/doc/spant-intro.html | 21 - spant-0.3.0/spant/man/apply_pvc.Rd |only spant-0.3.0/spant/man/calc_coil_noise_cor.Rd |only spant-0.3.0/spant/man/calc_coil_noise_sd.Rd |only spant-0.3.0/spant/man/calc_spec_snr.Rd |only spant-0.3.0/spant/man/comb_coils.Rd | 17 - spant-0.3.0/spant/man/crop_spec.Rd |only spant-0.3.0/spant/man/ecc.Rd | 5 spant-0.3.0/spant/man/fit_mrs.Rd | 6 spant-0.3.0/spant/man/get_mol_names.Rd |only spant-0.3.0/spant/man/get_mol_paras.Rd |only spant-0.3.0/spant/man/get_svs_voi.Rd |only spant-0.3.0/spant/man/get_uncoupled_mol.Rd | 4 spant-0.3.0/spant/man/get_voi_seg.Rd |only spant-0.3.0/spant/man/image.mrs_data.Rd |only spant-0.3.0/spant/man/int_spec.Rd | 2 spant-0.3.0/spant/man/plot.fit_result.Rd |only spant-0.3.0/spant/man/plot.mrs_data.Rd |only spant-0.3.0/spant/man/plot_voi_overlay.Rd |only spant-0.3.0/spant/man/plot_voi_overlay_seg.Rd |only spant-0.3.0/spant/man/press_ideal.Rd |only spant-0.3.0/spant/man/print.fit_result.Rd |only spant-0.3.0/spant/man/print.mrs_data.Rd |only spant-0.3.0/spant/man/pulse_acquire.Rd |only spant-0.3.0/spant/man/read_lcm_coord.Rd | 2 spant-0.3.0/spant/man/read_tqn_fit.Rd | 2 spant-0.3.0/spant/man/read_tqn_result.Rd | 2 spant-0.3.0/spant/man/resample_voi.Rd |only spant-0.3.0/spant/man/scale_amp_molal_pvc.Rd |only spant-0.3.0/spant/man/scale_amp_molar.Rd |only spant-0.3.0/spant/man/scale_amp_ratio.Rd |only spant-0.3.0/spant/man/scale_amp_water_ratio.Rd |only spant-0.3.0/spant/man/sim_basis.Rd | 2 spant-0.3.0/spant/man/sim_mol.Rd |only spant-0.3.0/spant/man/spant-package.Rd | 7 spant-0.3.0/spant/man/spin_echo_ideal.Rd |only spant-0.3.0/spant/man/stackplot.fit_result.Rd |only spant-0.3.0/spant/man/stackplot.mrs_data.Rd |only spant-0.3.0/spant/man/varpro_3_para_opts.Rd | 6 spant-0.3.0/spant/man/varpro_opts.Rd | 6 59 files changed, 700 insertions(+), 392 deletions(-)
Title: Mini Charts for Interactive Maps
Description: Add and modify small charts on an interactive map created with
package 'leaflet'. These charts can be used to represent at same time multiple
variables on a single map.
Author: Francois Guillem [aut, cre],
Jalal-Edine ZAWAM [ctb],
RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between leaflet.minicharts versions 0.3.1 dated 2017-05-30 and 0.4.0 dated 2017-06-20
DESCRIPTION | 8 ++++---- MD5 | 12 +++++++----- NAMESPACE | 1 + NEWS | 6 ++++++ R/sync_with.R |only inst/doc/introduction.html | 26 +++++++++++++------------- inst/leaflet.minicharts.min.js | 24 ++++++++++++------------ man/syncWith.Rd |only 8 files changed, 43 insertions(+), 34 deletions(-)
More information about leaflet.minicharts at CRAN
Permanent link
Title: Length-Based Spawning Potential Ratio
Description: Simulate expected equilibrium length composition, YPR, and
SPR using the LBSPR model. Fit the LBSPR model to length data to estimate
selectivity, relative fishing mortality, and spawning potential ratio for
data-limited fisheries.
Author: Adrian Hordyk [aut, cre]
Maintainer: Adrian Hordyk <ar.hordyk@gmail.com>
Diff between LBSPR versions 0.1.0 dated 2016-12-13 and 0.1.1 dated 2017-06-20
LBSPR-0.1.0/LBSPR/R/functions.r |only LBSPR-0.1.1/LBSPR/DESCRIPTION | 14 LBSPR-0.1.1/LBSPR/MD5 | 96 +- LBSPR-0.1.1/LBSPR/NAMESPACE | 6 LBSPR-0.1.1/LBSPR/R/DataDir.r |only LBSPR-0.1.1/LBSPR/R/FilterSmooth.r |only LBSPR-0.1.1/LBSPR/R/LBSPRfit.r |only LBSPR-0.1.1/LBSPR/R/LBSPRfit_.r |only LBSPR-0.1.1/LBSPR/R/LBSPRopt.r |only LBSPR-0.1.1/LBSPR/R/LBSPRsim.r |only LBSPR-0.1.1/LBSPR/R/LBSPRsim_.r |only LBSPR-0.1.1/LBSPR/R/RcppExports.R | 26 LBSPR-0.1.1/LBSPR/R/Shiny.r |only LBSPR-0.1.1/LBSPR/R/calcCurves.r |only LBSPR-0.1.1/LBSPR/R/defineMeths.r | 60 - LBSPR-0.1.1/LBSPR/R/getFMfun.r |only LBSPR-0.1.1/LBSPR/R/internals.r |only LBSPR-0.1.1/LBSPR/R/plotCurves.r |only LBSPR-0.1.1/LBSPR/R/plotEsts.r |only LBSPR-0.1.1/LBSPR/R/plotMat.r |only LBSPR-0.1.1/LBSPR/R/plotSPRCirc.r |only LBSPR-0.1.1/LBSPR/R/plotSim.r |only LBSPR-0.1.1/LBSPR/R/plotSize.r |only LBSPR-0.1.1/LBSPR/R/plotTarg.r |only LBSPR-0.1.1/LBSPR/build/vignette.rds |binary LBSPR-0.1.1/LBSPR/inst/LRaw_MultiYr.csv | 322 +++--- LBSPR-0.1.1/LBSPR/inst/LRaw_MultiYrHead.csv | 848 ++++++++++-------- LBSPR-0.1.1/LBSPR/inst/doc/LBSPR.R | 28 LBSPR-0.1.1/LBSPR/inst/doc/LBSPR.Rmd | 49 - LBSPR-0.1.1/LBSPR/inst/doc/LBSPR.html | 109 +- LBSPR-0.1.1/LBSPR/inst/shiny_apps |only LBSPR-0.1.1/LBSPR/man/DataDir.Rd | 3 LBSPR-0.1.1/LBSPR/man/FilterSmooth.Rd | 6 LBSPR-0.1.1/LBSPR/man/LBSPR_NLLabsel.Rd |only LBSPR-0.1.1/LBSPR/man/LBSPR_NLLgtg.Rd | 1 LBSPR-0.1.1/LBSPR/man/LBSPRfit.Rd | 3 LBSPR-0.1.1/LBSPR/man/LBSPRfit_.Rd | 3 LBSPR-0.1.1/LBSPR/man/LBSPRopt.Rd | 3 LBSPR-0.1.1/LBSPR/man/LBSPRsim.Rd | 3 LBSPR-0.1.1/LBSPR/man/LBSPRsim_.Rd | 28 LBSPR-0.1.1/LBSPR/man/LB_obj-class.Rd | 8 LBSPR-0.1.1/LBSPR/man/LB_pars-class.Rd | 6 LBSPR-0.1.1/LBSPR/man/Shiny.Rd |only LBSPR-0.1.1/LBSPR/man/calcCurves.Rd |only LBSPR-0.1.1/LBSPR/man/getFMfun.Rd | 3 LBSPR-0.1.1/LBSPR/man/initialize-LB_lengths-method.Rd | 1 LBSPR-0.1.1/LBSPR/man/initialize-LB_obj-method.Rd | 1 LBSPR-0.1.1/LBSPR/man/initialize-LB_pars-method.Rd | 3 LBSPR-0.1.1/LBSPR/man/plotCurves.Rd |only LBSPR-0.1.1/LBSPR/man/plotEsts.Rd | 3 LBSPR-0.1.1/LBSPR/man/plotMat.Rd | 7 LBSPR-0.1.1/LBSPR/man/plotSPRCirc.Rd | 3 LBSPR-0.1.1/LBSPR/man/plotSim.Rd | 26 LBSPR-0.1.1/LBSPR/man/plotSize.Rd | 3 LBSPR-0.1.1/LBSPR/man/plotTarg.Rd | 3 LBSPR-0.1.1/LBSPR/src/NLLabsel.cpp |only LBSPR-0.1.1/LBSPR/src/NLLgtg.cpp | 10 LBSPR-0.1.1/LBSPR/src/RcppExports.cpp | 36 LBSPR-0.1.1/LBSPR/vignettes/LBSPR.Rmd | 49 - 59 files changed, 1092 insertions(+), 678 deletions(-)
Title: Semiparametric Copula Regression Models
Description: Routines for fitting various copula regression models, with several types of covariate effects, in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between SemiParBIVProbit versions 3.8-1 dated 2017-01-18 and 3.8-2 dated 2017-06-20
SemiParBIVProbit-3.8-1/SemiParBIVProbit/R/H.tri.R |only SemiParBIVProbit-3.8-1/SemiParBIVProbit/R/g.tri.R |only SemiParBIVProbit-3.8-1/SemiParBIVProbit/R/triprobgHsSS.r |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/ChangeLog | 5 SemiParBIVProbit-3.8-2/SemiParBIVProbit/DESCRIPTION | 10 SemiParBIVProbit-3.8-2/SemiParBIVProbit/MD5 | 208 - SemiParBIVProbit-3.8-2/SemiParBIVProbit/NAMESPACE | 30 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/AT.r | 110 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/BCDF.r | 15 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/BiCDF.r | 17 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/H.tri.r |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/H.triESS.r | 184 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/H.triSS.r | 183 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/PosDefCor.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/S.m.r | 232 + SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/SS.r |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/SemiParBIVProbit.fit.R | 36 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/SemiParBIVProbit.fit.post.r | 6 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/SemiParBIVProbit.r | 50 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/SemiParTRIV.fit.post.r | 22 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/SemiParTRIV.r | 173 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/Xdpred.r |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/aCov.r | 3 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/ass.dp.r | 7 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/ass.ms.r | 23 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bcont.R | 2 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bcontSurv.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bcontSurvG.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bcontSurvGuniv.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bcorrec.R | 313 - SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bcorrec2.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bcorrecDiscr.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bcorrecFuncs.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bprobgHsContUniv.r | 126 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bprobgHsContUniv3.r | 147 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/bprobgHsContUnivBIN.r |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/copgHs.r | 201 + SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/copgHs2.r | 21 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/copgHs3.r | 76 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/copgHsAT.r | 58 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/copgHsCont.r | 1857 +++++++++- SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/copulaReg.fit.post.r | 18 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/copulaReg.r | 312 + SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/copulaSampleSel.fit.post.r | 6 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/copulaSampleSel.r | 65 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/distrHs.r | 421 ++ SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/distrHsAT.r | 39 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/distrHsAT1.r | 47 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/distrHsATDiscr.r | 6 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/distrHsDiscr.r | 18 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/edf.loop.r | 40 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/esp.tr.R | 1 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/eta.tr.R | 20 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/form.eq12.r | 33 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/form.gaml.r | 2 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/func.OPT.r | 6 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/g.tri.r |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/g.triESS.r | 48 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/g.triSS.r | 441 +- SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/gamls.upsv.r | 15 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/gamlss.fit.post.r | 12 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/gamlss.r | 271 + SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/hazsurv.plot.r |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/imputeSS.r | 18 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/int.postcheck.R | 9 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/overall.sv.r | 8 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/overall.svG.R | 131 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/pen.r | 71 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/plot.SemiParBIVProbit.r | 8 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/post.check.R | 86 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/postVb.r | 64 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/pp.r | 20 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/pream.wm.r | 86 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/pred.var.r | 17 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/predict.SemiParBIVProbit.r | 9 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/print.SemiParTRIV.r | 17 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/print.copulaReg.r | 16 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/print.gamlss.r | 6 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/print.summary.SemiParTRIV.r | 8 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/print.summary.copulaReg.r | 8 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/print.summary.gamlss.r | 2 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/probm.R | 53 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/probmS.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/pscr.r | 63 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/pscr0.r | 51 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/resp.check.R | 51 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/sim.resp.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/startsn.r | 13 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/summary.SemiParTRIV.r | 73 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/summary.copulaReg.r | 5 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/summary.gamlss.r | 10 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/susu.r | 30 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/susutsn.r | 13 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/teta.tr.R | 13 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/triprobgHs.R | 149 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/triprobgHsESS.R | 65 SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/triprobgHsSS.R |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/vis.SemiParBIVProbit.r |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/R/working.comp.r | 4 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/LM.bpm.Rd | 2 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/SemiParBIVProbit-package.Rd | 16 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/SemiParBIVProbit.Rd | 6 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/SemiParTRIV.Rd | 67 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/adjCov.Rd | 4 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/adjCovSD.Rd | 4 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/bprobgHsContUniv.Rd | 1 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/copulaReg.Rd | 123 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/copulaSampleSel.Rd | 30 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/eta.tr.Rd | 8 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/gamlss.Rd | 241 + SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/gt.bpm.Rd | 2 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/hazsurv.plot.Rd |only SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/plot.SemiParBIVProbit.Rd | 5 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/predict.SemiParBIVProbit.Rd | 12 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/resp.check.Rd | 4 SemiParBIVProbit-3.8-2/SemiParBIVProbit/man/vis.SemiParBIVProbit.Rd |only 116 files changed, 6228 insertions(+), 1410 deletions(-)
More information about SemiParBIVProbit at CRAN
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Title: Statistical Depth Functions for Multivariate Analysis
Description: Data depth concept offers a variety of powerful and user friendly
tools for robust exploration and inference for multivariate data. The offered
techniques may be successfully used in cases of lack of our knowledge on
parametric models generating data due to their nature. The
package consist of among others implementations of several data depth techniques
involving multivariate quantile-quantile plots, multivariate scatter estimators,
multivariate Wilcoxon tests and robust regressions.
Author: Zygmunt Zawadzki [aut, cre],
Daniel Kosiorowski [aut],
Krzysztof Slomczynski [ctb],
Mateusz Bocian [ctb],
Anna Wegrzynkiewicz [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between DepthProc versions 1.0.7 dated 2016-02-12 and 2.0.1 dated 2017-06-20
DepthProc-1.0.7/DepthProc/R/plotMBD.R |only DepthProc-1.0.7/DepthProc/man/depthMBD.Rd |only DepthProc-1.0.7/DepthProc/man/grapes-plus-grapes-methods.Rd |only DepthProc-1.0.7/DepthProc/man/plot-DepthMBD-ANY-method.Rd |only DepthProc-2.0.1/DepthProc/ChangeLog |only DepthProc-2.0.1/DepthProc/DESCRIPTION | 44 DepthProc-2.0.1/DepthProc/MD5 | 207 +-- DepthProc-2.0.1/DepthProc/NAMESPACE | 166 +- DepthProc-2.0.1/DepthProc/R/AllClasses.R | 384 ++--- DepthProc-2.0.1/DepthProc/R/AllClassesFnc.R |only DepthProc-2.0.1/DepthProc/R/AsymmetryCurveClass.R | 12 DepthProc-2.0.1/DepthProc/R/CovarianceFunctions.R | 113 - DepthProc-2.0.1/DepthProc/R/DDPlotClass.R | 57 DepthProc-2.0.1/DepthProc/R/DepthBasedTests.R | 105 - DepthProc-2.0.1/DepthProc/R/DepthCurveClass.R | 238 +-- DepthProc-2.0.1/DepthProc/R/RcppExports.R | 6 DepthProc-2.0.1/DepthProc/R/ScaleCurveClass.R | 14 DepthProc-2.0.1/DepthProc/R/Utils.R | 46 DepthProc-2.0.1/DepthProc/R/asymmetrycurve.R | 385 ++--- DepthProc-2.0.1/DepthProc/R/binningDepth2d.R | 364 ++--- DepthProc-2.0.1/DepthProc/R/ddPlot.r | 118 - DepthProc-2.0.1/DepthProc/R/ddmvnorm.R | 64 DepthProc-2.0.1/DepthProc/R/deepreg2d.R | 76 - DepthProc-2.0.1/DepthProc/R/depth.R | 647 ++++------ DepthProc-2.0.1/DepthProc/R/depthContour.R | 239 +-- DepthProc-2.0.1/DepthProc/R/depthDensity.R | 187 +- DepthProc-2.0.1/DepthProc/R/depthLocal.R | 162 +- DepthProc-2.0.1/DepthProc/R/depthMedian.R | 68 - DepthProc-2.0.1/DepthProc/R/depthPersp.R | 139 +- DepthProc-2.0.1/DepthProc/R/depthproc.R | 45 DepthProc-2.0.1/DepthProc/R/fncFunctions.R |only DepthProc-2.0.1/DepthProc/R/fncUtils.R |only DepthProc-2.0.1/DepthProc/R/functional_boxplot.R |only DepthProc-2.0.1/DepthProc/R/functional_depths.R |only DepthProc-2.0.1/DepthProc/R/locationScaleDepth.R | 381 +++-- DepthProc-2.0.1/DepthProc/R/lsd.R | 471 +++---- DepthProc-2.0.1/DepthProc/R/mregdepth.R | 16 DepthProc-2.0.1/DepthProc/R/runifsphere.R | 30 DepthProc-2.0.1/DepthProc/R/scalecurve.R | 214 +-- DepthProc-2.0.1/DepthProc/R/trimprojreg2d.R | 102 + DepthProc-2.0.1/DepthProc/data/USLABOUR.rda |binary DepthProc-2.0.1/DepthProc/data/france.rda |only DepthProc-2.0.1/DepthProc/data/inf.mort.rda |binary DepthProc-2.0.1/DepthProc/data/internet.users.rda |only DepthProc-2.0.1/DepthProc/data/katowice.airpollution.rda |only DepthProc-2.0.1/DepthProc/data/maesles.imm.rda |binary DepthProc-2.0.1/DepthProc/data/under5.mort.rda |binary DepthProc-2.0.1/DepthProc/inst/NEWS.Rd |only DepthProc-2.0.1/DepthProc/man/AsymmetryCurve-class.Rd | 4 DepthProc-2.0.1/DepthProc/man/BinnDepth2d-class.Rd | 3 DepthProc-2.0.1/DepthProc/man/CovDepthWeighted-class.Rd | 9 DepthProc-2.0.1/DepthProc/man/CovLP.Rd | 38 DepthProc-2.0.1/DepthProc/man/DDPlot-class.Rd | 3 DepthProc-2.0.1/DepthProc/man/DeepReg2d-class.Rd | 3 DepthProc-2.0.1/DepthProc/man/Depth-class.Rd | 11 DepthProc-2.0.1/DepthProc/man/DepthCurve-class.Rd | 29 DepthProc-2.0.1/DepthProc/man/DepthCurveList-class.Rd | 4 DepthProc-2.0.1/DepthProc/man/DepthDensity-class.Rd | 4 DepthProc-2.0.1/DepthProc/man/FunctionalDepth-class.Rd |only DepthProc-2.0.1/DepthProc/man/LSDepth-class.Rd | 14 DepthProc-2.0.1/DepthProc/man/LSDepthContour-class.Rd | 14 DepthProc-2.0.1/DepthProc/man/RobReg-class.Rd | 3 DepthProc-2.0.1/DepthProc/man/ScaleCurve-class.Rd | 26 DepthProc-2.0.1/DepthProc/man/TrimReg2d-class.Rd | 4 DepthProc-2.0.1/DepthProc/man/USLABOUR.Rd | 6 DepthProc-2.0.1/DepthProc/man/abline-RobReg-method.Rd | 4 DepthProc-2.0.1/DepthProc/man/as.matrix-methods.Rd | 5 DepthProc-2.0.1/DepthProc/man/asymmetryCurve.Rd | 67 - DepthProc-2.0.1/DepthProc/man/binningDepth2D.Rd | 58 DepthProc-2.0.1/DepthProc/man/combineDepthCurves-methods.Rd |only DepthProc-2.0.1/DepthProc/man/ddPlot.Rd | 48 DepthProc-2.0.1/DepthProc/man/ddmvnorm.Rd | 37 DepthProc-2.0.1/DepthProc/man/deepReg2d.Rd | 52 DepthProc-2.0.1/DepthProc/man/depth.Rd | 59 DepthProc-2.0.1/DepthProc/man/depthContour.Rd | 42 DepthProc-2.0.1/DepthProc/man/depthDensity.Rd | 19 DepthProc-2.0.1/DepthProc/man/depthEuclid.Rd | 13 DepthProc-2.0.1/DepthProc/man/depthLP.Rd | 16 DepthProc-2.0.1/DepthProc/man/depthLocal.Rd | 74 - DepthProc-2.0.1/DepthProc/man/depthMah.Rd | 15 DepthProc-2.0.1/DepthProc/man/depthMedian-methods.Rd | 25 DepthProc-2.0.1/DepthProc/man/depthPersp.Rd | 34 DepthProc-2.0.1/DepthProc/man/depthProjection.Rd | 15 DepthProc-2.0.1/DepthProc/man/depthTukey.Rd | 26 DepthProc-2.0.1/DepthProc/man/fncBoxPlot.Rd |only DepthProc-2.0.1/DepthProc/man/fncDepth.Rd |only DepthProc-2.0.1/DepthProc/man/fncDepthFM.Rd |only DepthProc-2.0.1/DepthProc/man/fncDepthMBD.Rd |only DepthProc-2.0.1/DepthProc/man/fncDepthMedian.Rd |only DepthProc-2.0.1/DepthProc/man/fncGetBand.Rd |only DepthProc-2.0.1/DepthProc/man/france.Rd |only DepthProc-2.0.1/DepthProc/man/getPlot-methods.Rd | 8 DepthProc-2.0.1/DepthProc/man/inf.mort.Rd | 8 DepthProc-2.0.1/DepthProc/man/internet.users.Rd |only DepthProc-2.0.1/DepthProc/man/katowice.airpollution.Rd |only DepthProc-2.0.1/DepthProc/man/lsdAddContour-methods.Rd | 17 DepthProc-2.0.1/DepthProc/man/lsdGetContour-methods.Rd | 19 DepthProc-2.0.1/DepthProc/man/lsdSampleDepthContours.Rd | 20 DepthProc-2.0.1/DepthProc/man/lsdSampleMaxDepth.Rd | 11 DepthProc-2.0.1/DepthProc/man/mWilcoxonTest.Rd | 50 DepthProc-2.0.1/DepthProc/man/maesles.imm.Rd | 4 DepthProc-2.0.1/DepthProc/man/plot-BinnDepth2d-ANY-method.Rd | 10 DepthProc-2.0.1/DepthProc/man/plot-DepthDensity-ANY-method.Rd | 10 DepthProc-2.0.1/DepthProc/man/plot-LSDepthContour-ANY-method.Rd | 16 DepthProc-2.0.1/DepthProc/man/plot-methods.Rd | 14 DepthProc-2.0.1/DepthProc/man/runifsphere.Rd | 10 DepthProc-2.0.1/DepthProc/man/scaleCurve.Rd | 52 DepthProc-2.0.1/DepthProc/man/trimProjReg2d.Rd | 78 - DepthProc-2.0.1/DepthProc/man/under5.mort.Rd | 4 DepthProc-2.0.1/DepthProc/src/Depth.cpp | 140 +- DepthProc-2.0.1/DepthProc/src/Makevars | 1 DepthProc-2.0.1/DepthProc/src/Makevars.win | 1 DepthProc-2.0.1/DepthProc/src/RcppExports.cpp | 126 + DepthProc-2.0.1/DepthProc/src/UtilsCPP.cpp | 63 DepthProc-2.0.1/DepthProc/src/depthcpp.cpp | 21 DepthProc-2.0.1/DepthProc/src/init.c |only DepthProc-2.0.1/DepthProc/tests |only 117 files changed, 3447 insertions(+), 3120 deletions(-)
Title: Post-Processing for the Method of Anchored Distributions
Description: Supplements the 'MAD#' software (see <http://mad.codeplex.com/>,
or Osorio-Murillo, et al. (2015) <doi:10.1016/j.envsoft.2015.01.002>) that
implements the Method of Anchored Distributions for inferring geostatistical
parameters (see Rubin, et al. (2010) <doi:10.1029/2009WR008799>). Reads 'MAD#'
result databases, performs dimension reduction on inversion data, calculates
likelihoods and posteriors, and tests for convergence. Also generates plots
to summarize results.
Author: Heather Savoy
Maintainer: Heather Savoy <frystacka@berkeley.edu>
Diff between anchoredDistr versions 1.0.2 dated 2017-06-15 and 1.0.3 dated 2017-06-20
DESCRIPTION | 14 +- MD5 | 160 +++++++++++++++++++++++++++++++-- NAMESPACE | 3 R/readMAD.R | 8 + inst/doc/anchoredDistr.R | 9 - inst/doc/anchoredDistr.Rmd | 11 -- inst/doc/anchoredDistr.html | 12 +- inst/extdata/Tutorial_example1.xResult |only inst/extdata/example1 |only vignettes/anchoredDistr.Rmd | 11 -- 10 files changed, 184 insertions(+), 44 deletions(-)