Title: Graph Matching Library for R
Description: This is a wrapper package for the graph matching library 'graphm'. The original 'graphm' C/C++ library can be found in <http://cbio.mines-paristech.fr/graphm/> . Latest version ( 0.52 ) of this library is slightly modified to fit 'Rcpp' usage and included in the source package. The development version of the package is also available at <https://github.com/adalisan/RGraphM> .
Author: Sancar Adali
Maintainer: Sancar Adali <sancar.adali@gmail.com>
Diff between RGraphM versions 0.1.5 dated 2017-06-12 and 0.1.6 dated 2017-06-26
DESCRIPTION | 6 +-- MD5 | 34 ++++++++++----------- NAMESPACE | 8 +---- R/RcppExports.R | 2 - cleanup | 1 configure | 13 +++++++- src/Makevars.in | 66 ++++++++---------------------------------- src/graphm/Makefile.in | 41 ++++++++++++++------------ src/graphm/algorithm.h | 11 ++++++- src/graphm/algorithm_ca.cpp | 8 ++--- src/graphm/algorithm_path.cpp | 14 ++++---- src/graphm/algorithm_qcv.cpp | 6 +-- src/graphm/experiment.cpp | 3 - src/graphm/graph.cpp | 15 ++++++--- src/graphm/graph.h | 2 - src/graphm/rpc.cpp | 5 ++- src/graphm/rpc.h | 2 + src/graphmatch_rcpp.cpp | 24 +++++---------- 18 files changed, 123 insertions(+), 138 deletions(-)
Title: Read, Tidy, and Display Data from Microtiter Plates
Description: Tools for interacting with data from experiments done in microtiter
plates. Easily read in plate-shaped data and convert it to tidy format,
combine plate-shaped data with tidy data, and view tidy data in plate shape.
Author: Sean Hughes [aut, cre]
Maintainer: Sean Hughes <smhughes@uw.edu>
Diff between plater versions 1.0.0 dated 2016-10-06 and 1.0.1 dated 2017-06-26
DESCRIPTION | 8 ++++---- MD5 | 21 ++++++++++++--------- NEWS.md | 5 +++++ R/convert_plate_to_column.R | 13 ++++++++++--- R/plate_utilities.R | 12 ++++++++++-- R/read_plate.R | 2 +- R/view_plate.R | 3 +++ build/vignette.rds |binary inst/CITATION |only tests/testthat/test-read_plate.R | 17 ++++++++++++++++- tests/testthat/test-view_plate.R | 15 ++++++++++++++- tests/testthat/testData/incomplete-final-line.csv |only tests/testthat/testData/numbers-and-text.csv |only 13 files changed, 75 insertions(+), 21 deletions(-)
Title: Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples
Description: Machine learning method specifically designed for
pre-miRNA prediction. It takes advantage of unlabeled sequences to improve
the prediction rates even when there are just a few positive examples, when
the negative examples are unreliable or are not good representatives of
its class. Furthermore, the method can automatically search for negative
examples if the user is unable to provide them. MiRNAss can find a good
boundary to divide the pre-miRNAs from other groups of sequences; it
automatically optimizes the threshold that defines the classes boundaries,
and thus, it is robust to high class imbalance. Each step of the method is
scalable and can handle large volumes of data.
Author: Cristian Yones
Maintainer: Cristian Yones <cyones@sinc.unl.edu.ar>
Diff between miRNAss versions 1.0 dated 2017-05-06 and 1.1 dated 2017-06-26
DESCRIPTION | 6 +-- MD5 | 19 ++++++------ R/miRNAss.R | 76 +++++++++++++++++++++++++------------------------- README.md |only inst/doc/miRNAss.Rnw | 27 +++++++++++++---- inst/doc/miRNAss.pdf |binary man/miRNAss.Rd | 34 +++++++++++----------- src/calcDistance.cpp | 9 +++-- src/calcThreshold.cpp | 22 +++++++++----- src/edgeListKnn.cpp | 2 - vignettes/miRNAss.Rnw | 27 +++++++++++++---- 11 files changed, 131 insertions(+), 91 deletions(-)
Title: A Lightweight and Flexible Web Framework
Description: A very flexible framework for building server side logic in R. The
framework is unopinionated when it comes to how HTTP requests and WebSocket
messages are handled and supports all levels of app complexity; from serving
static content to full-blown dynamic web-apps. Fiery does not hold your hand
as much as e.g. the shiny package does, but instead sets you free to create
your web app the way you want.
Author: Thomas Lin Pedersen [aut, cre]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between fiery versions 0.2.2 dated 2017-01-07 and 0.2.3 dated 2017-06-26
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- NEWS.md | 6 +++++- R/FutureStack.R | 11 +++++++---- README.md | 2 +- man/Fire.Rd | 2 +- man/fake_request.Rd | 1 - man/fiery-package.Rd | 3 +++ tests/testthat/test-Fire.R | 2 +- 10 files changed, 33 insertions(+), 24 deletions(-)
Title: Install Packages from Snapshots on the Checkpoint Server for
Reproducibility
Description: The goal of checkpoint is to solve the problem of package
reproducibility in R. Specifically, checkpoint allows you to install packages
as they existed on CRAN on a specific snapshot date as if you had a CRAN time
machine. To achieve reproducibility, the checkpoint() function installs the
packages required or called by your project and scripts to a local library
exactly as they existed at the specified point in time. Only those packages
are available to your project, thereby avoiding any package updates that came
later and may have altered your results. In this way, anyone using checkpoint's
checkpoint() can ensure the reproducibility of your scripts or projects at any
time. To create the snapshot archives, once a day (at midnight UTC) Microsoft
refreshes the Austria CRAN mirror on the "Microsoft R Archived Network"
server (<https://mran.microsoft.com/>). Immediately after completion
of the rsync mirror process, the process takes a snapshot, thus creating the
archive. Snapshot archives exist starting from 2014-09-17.
Author: Microsoft Corporation
Maintainer: Andrie de Vries <adevries@microsoft.com>
Diff between checkpoint versions 0.4.0 dated 2017-04-12 and 0.4.1 dated 2017-06-26
checkpoint-0.4.0/checkpoint/vignettes/using-checkpoint-with-knitr.Rmd |only checkpoint-0.4.1/checkpoint/DESCRIPTION | 10 checkpoint-0.4.1/checkpoint/MD5 | 43 +-- checkpoint-0.4.1/checkpoint/NAMESPACE | 1 checkpoint-0.4.1/checkpoint/R/checkpoint.R | 11 checkpoint-0.4.1/checkpoint/R/checkpoint_internals.R | 4 checkpoint-0.4.1/checkpoint/R/checkpoint_log.R | 2 checkpoint-0.4.1/checkpoint/R/checkpoint_paths.R | 3 checkpoint-0.4.1/checkpoint/R/scanRepoPackages.R | 14 - checkpoint-0.4.1/checkpoint/build/vignette.rds |binary checkpoint-0.4.1/checkpoint/inst/doc/checkpoint.R | 29 +- checkpoint-0.4.1/checkpoint/inst/doc/checkpoint.Rmd | 45 ++- checkpoint-0.4.1/checkpoint/inst/doc/checkpoint.html | 54 +++- checkpoint-0.4.1/checkpoint/inst/doc/managing-checkpoint-archives.R | 10 checkpoint-0.4.1/checkpoint/inst/doc/managing-checkpoint-archives.Rmd | 42 ++- checkpoint-0.4.1/checkpoint/inst/doc/managing-checkpoint-archives.html | 94 ++++--- checkpoint-0.4.1/checkpoint/inst/doc/using-checkpoint-with-knitr.R | 35 ++ checkpoint-0.4.1/checkpoint/inst/doc/using-checkpoint-with-knitr.Rmd | 62 +++-- checkpoint-0.4.1/checkpoint/inst/doc/using-checkpoint-with-knitr.html | 118 ++++++---- checkpoint-0.4.1/checkpoint/man/scanForPackages.Rd |only checkpoint-0.4.1/checkpoint/tests/testthat/test-3-checkpoint.R | 3 checkpoint-0.4.1/checkpoint/vignettes/archive |only checkpoint-0.4.1/checkpoint/vignettes/checkpoint.Rmd | 45 ++- checkpoint-0.4.1/checkpoint/vignettes/managing-checkpoint-archives.Rmd | 42 ++- 24 files changed, 443 insertions(+), 224 deletions(-)
Title: Computerized Adaptive Testing for Survey Research
Description: Provides methods of computerized adaptive testing for survey researchers. Includes functionality for data fit with the classic item response methods including the latent trait model, Birnbaum`s three parameter model, the graded response, and the generalized partial credit model. Additionally, includes several ability parameter estimation and item selection routines. During item selection, all calculations are done in compiled C++ code.
Author: Jacob Montgomery [aut],
Erin Rossiter [aut, cre]
Maintainer: Erin Rossiter <erinrossiter@wustl.edu>
Diff between catSurv versions 1.0.1 dated 2017-06-16 and 1.0.2 dated 2017-06-26
DESCRIPTION | 15 - MD5 | 53 +++--- NAMESPACE | 1 NEWS.md | 13 + R/Cat-class.R | 1 src/EAPEstimator.cpp | 27 +++ src/EAPEstimator.h | 2 src/EPVSelector.cpp | 76 +++++++-- src/Estimator.cpp | 416 +++++++++++++++++++++++++++++++++++++++++++++++++-- src/Estimator.h | 33 +++- src/KLSelector.cpp | 51 +++--- src/LKLSelector.cpp | 47 +++-- src/MAPEstimator.cpp | 28 +++ src/MAPEstimator.h | 2 src/MEISelector.cpp | 75 +++++++-- src/MFIISelector.cpp | 42 +++-- src/MFISelector.cpp | 45 +++-- src/MLEEstimator.cpp | 73 ++++++++ src/MLEEstimator.h | 3 src/MLWISelector.cpp | 46 +++-- src/MPWISelector.cpp | 44 +++-- src/Makevars | 2 src/Makevars.win | 6 src/PKLSelector.cpp | 45 +++-- src/ParallelUtil.h |only src/Prior.cpp | 15 - src/WLEEstimator.cpp | 169 ++++++++++++++++++++ src/WLEEstimator.h | 7 28 files changed, 1121 insertions(+), 216 deletions(-)
Title: An Interface to Google's 'BigQuery' 'API'
Description: Easily talk to Google's 'BigQuery' database from R.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between bigrquery versions 0.4.0 dated 2017-06-23 and 0.4.1 dated 2017-06-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/dplyr.r | 9 +++++++-- 4 files changed, 17 insertions(+), 8 deletions(-)
Title: Network Visualization using 'vis.js' Library
Description: Provides an R interface to the 'vis.js' JavaScript charting
library. It allows an interactive visualization of networks.
Author: Almende B.V. [aut, cph] (vis.js library in htmlwidgets/lib,
http://visjs.org, http://www.almende.com/home),
Benoit Thieurmel [aut, cre] (R interface),
Titouan Robert [aut, ctb]
Maintainer: Benoit Thieurmel <benoit.thieurmel@datastorm.fr>
Diff between visNetwork versions 1.0.3 dated 2016-12-22 and 2.0.0 dated 2017-06-26
visNetwork-1.0.3/visNetwork/R/visGetEdges.R |only visNetwork-1.0.3/visNetwork/R/visGetNodes.R |only visNetwork-1.0.3/visNetwork/R/visGetPositions.R |only visNetwork-2.0.0/visNetwork/DESCRIPTION | 22 visNetwork-2.0.0/visNetwork/LICENSE | 2 visNetwork-2.0.0/visNetwork/MD5 | 370 visNetwork-2.0.0/visNetwork/NAMESPACE | 141 visNetwork-2.0.0/visNetwork/NEWS | 285 visNetwork-2.0.0/visNetwork/R/dependencies.R | 342 visNetwork-2.0.0/visNetwork/R/utils.R | 80 visNetwork-2.0.0/visNetwork/R/visClustering.R | 443 visNetwork-2.0.0/visNetwork/R/visCollapse.R |only visNetwork-2.0.0/visNetwork/R/visConfigure.R | 104 visNetwork-2.0.0/visNetwork/R/visDocumentation.R | 72 visNetwork-2.0.0/visNetwork/R/visEdges.R | 426 visNetwork-2.0.0/visNetwork/R/visExport.R | 154 visNetwork-2.0.0/visNetwork/R/visFit.R | 96 visNetwork-2.0.0/visNetwork/R/visFocus.R | 92 visNetwork-2.0.0/visNetwork/R/visGetUtils.R |only visNetwork-2.0.0/visNetwork/R/visGroups.R | 142 visNetwork-2.0.0/visNetwork/R/visHierarchicalLayout.R | 138 visNetwork-2.0.0/visNetwork/R/visIgraph.R | 372 visNetwork-2.0.0/visNetwork/R/visIgraphLayout.R | 284 visNetwork-2.0.0/visNetwork/R/visInteraction.R | 252 visNetwork-2.0.0/visNetwork/R/visLayout.R | 116 visNetwork-2.0.0/visNetwork/R/visLegend.R | 408 visNetwork-2.0.0/visNetwork/R/visMoveNode.R | 76 visNetwork-2.0.0/visNetwork/R/visNearestNodes.R | 470 visNetwork-2.0.0/visNetwork/R/visNetwork.R | 712 - visNetwork-2.0.0/visNetwork/R/visNetworkEvents.R | 330 visNetwork-2.0.0/visNetwork/R/visNetworkProxy.R | 157 visNetwork-2.0.0/visNetwork/R/visNodes.R | 416 visNetwork-2.0.0/visNetwork/R/visOptions.R | 973 - visNetwork-2.0.0/visNetwork/R/visPhysics.R | 290 visNetwork-2.0.0/visNetwork/R/visRedraw.R | 66 visNetwork-2.0.0/visNetwork/R/visRemoveEdges.R | 85 visNetwork-2.0.0/visNetwork/R/visRemoveNodes.R | 83 visNetwork-2.0.0/visNetwork/R/visSave.R | 65 visNetwork-2.0.0/visNetwork/R/visSelectEdges.R | 80 visNetwork-2.0.0/visNetwork/R/visSelectNodes.R | 90 visNetwork-2.0.0/visNetwork/R/visSetData.R | 70 visNetwork-2.0.0/visNetwork/R/visSetOptions.R | 80 visNetwork-2.0.0/visNetwork/R/visSetSelection.R | 104 visNetwork-2.0.0/visNetwork/R/visSetTitle.R |only visNetwork-2.0.0/visNetwork/R/visStabilize.R | 208 visNetwork-2.0.0/visNetwork/R/visTree.R |only visNetwork-2.0.0/visNetwork/R/visTreeModule.R |only visNetwork-2.0.0/visNetwork/R/visUnselectAll.R | 66 visNetwork-2.0.0/visNetwork/R/visUpdateEdges.R | 89 visNetwork-2.0.0/visNetwork/R/visUpdateNodes.R | 89 visNetwork-2.0.0/visNetwork/README.md | 137 visNetwork-2.0.0/visNetwork/build/vignette.rds |binary visNetwork-2.0.0/visNetwork/inst/NOTICE | 420 visNetwork-2.0.0/visNetwork/inst/doc/Introduction-to-visNetwork.R | 313 visNetwork-2.0.0/visNetwork/inst/doc/Introduction-to-visNetwork.Rmd | 568 visNetwork-2.0.0/visNetwork/inst/doc/Introduction-to-visNetwork.html | 677 - visNetwork-2.0.0/visNetwork/inst/doc/css/style.css | 9 visNetwork-2.0.0/visNetwork/inst/doc/network/edges.html | 312 visNetwork-2.0.0/visNetwork/inst/doc/network/index.html | 10 visNetwork-2.0.0/visNetwork/inst/doc/network/manipulation.html | 2 visNetwork-2.0.0/visNetwork/inst/doc/network/nodes.html | 373 visNetwork-2.0.0/visNetwork/inst/examples/all_examples.R | 444 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/css/dataManipulation.css | 80 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/Blob/Blob.js | 422 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/Blob/LICENSE.md | 50 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/Blob/README.md | 18 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/FileSaver/FileSaver.min.js | 4 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/FileSaver/LICENSE.md | 18 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/FileSaver/README.md | 222 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/canvas-toBlob/LICENSE.md | 62 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/canvas-toBlob/README.md | 34 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/canvas-toBlob/canvas-toBlob.js | 250 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/export/html2canvas/html2canvas.js | 6752 +++++----- visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/HELP-US-OUT.txt | 14 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/css/font-awesome.min.css | 8 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/fonts/fontawesome-webfont.svg | 1308 - visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/animated.less | 68 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/bordered-pulled.less | 50 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/core.less | 24 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/fixed-width.less | 12 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/font-awesome.less | 34 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/icons.less | 1394 +- visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/larger.less | 26 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/list.less | 38 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/mixins.less | 52 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/path.less | 30 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/rotated-flipped.less | 40 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/stacked.less | 40 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/less/variables.less | 1416 +- visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_animated.scss | 68 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_bordered-pulled.scss | 50 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_core.scss | 24 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_fixed-width.scss | 12 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_icons.scss | 1394 +- visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_larger.scss | 26 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_list.scss | 38 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_mixins.scss | 52 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_path.scss | 30 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_rotated-flipped.scss | 40 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_stacked.scss | 40 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/_variables.scss | 1416 +- visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/font-awesome/scss/font-awesome.scss | 34 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/ionicons/LICENSE | 42 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/ionicons/css/ionicons.min.css | 22 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/ionicons/fonts/ionicons.svg | 4460 +++--- visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/vis/vis.css | 2849 ++-- visNetwork-2.0.0/visNetwork/inst/htmlwidgets/lib/vis/vis.min.js | 47 visNetwork-2.0.0/visNetwork/inst/htmlwidgets/visNetwork.js | 6446 +++++---- visNetwork-2.0.0/visNetwork/inst/htmlwidgets/visNetwork.yaml | 12 visNetwork-2.0.0/visNetwork/inst/shiny/server.R | 31 visNetwork-2.0.0/visNetwork/inst/shiny/src/server/basic_server.R | 112 visNetwork-2.0.0/visNetwork/inst/shiny/src/server/manip_server.R | 36 visNetwork-2.0.0/visNetwork/inst/shiny/src/server/options_server.R | 100 visNetwork-2.0.0/visNetwork/inst/shiny/src/server/proxy_anim_server.R | 112 visNetwork-2.0.0/visNetwork/inst/shiny/src/server/proxy_get_server.R | 142 visNetwork-2.0.0/visNetwork/inst/shiny/src/server/proxy_nodes_server.R | 88 visNetwork-2.0.0/visNetwork/inst/shiny/src/server/proxy_options_server.R | 171 visNetwork-2.0.0/visNetwork/inst/shiny/src/server/proxy_select_server.R | 114 visNetwork-2.0.0/visNetwork/inst/shiny/src/server/proxy_set_title_server.R |only visNetwork-2.0.0/visNetwork/inst/shiny/src/server/proxy_update_server.R | 123 visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/basic_ui.R | 44 visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/manip_ui.R | 48 visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/options_ui.R | 92 visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/proxy_anim_ui.R | 40 visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/proxy_get_ui.R | 38 visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/proxy_nodes_ui.R | 42 visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/proxy_options_ui.R | 51 visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/proxy_select_ui.R | 32 visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/proxy_set_title_ui.R |only visNetwork-2.0.0/visNetwork/inst/shiny/src/ui/proxy_update_ui.R | 32 visNetwork-2.0.0/visNetwork/inst/shiny/ui.R | 39 visNetwork-2.0.0/visNetwork/inst/tests/get_coefficients_transformation.R | 60 visNetwork-2.0.0/visNetwork/inst/tests/highlight_combinaison.R | 215 visNetwork-2.0.0/visNetwork/inst/tests/shiny_collapsed |only visNetwork-2.0.0/visNetwork/inst/tests/sparkline.R |only visNetwork-2.0.0/visNetwork/inst/tests/understand_coordinates.R | 124 visNetwork-2.0.0/visNetwork/man/addExport.Rd | 39 visNetwork-2.0.0/visNetwork/man/addFontAwesome.Rd | 85 visNetwork-2.0.0/visNetwork/man/addIonicons.Rd | 67 visNetwork-2.0.0/visNetwork/man/visClusteringByColor.Rd | 97 visNetwork-2.0.0/visNetwork/man/visClusteringByConnection.Rd | 53 visNetwork-2.0.0/visNetwork/man/visClusteringByGroup.Rd | 80 visNetwork-2.0.0/visNetwork/man/visClusteringByHubsize.Rd | 59 visNetwork-2.0.0/visNetwork/man/visClusteringOutliers.Rd | 59 visNetwork-2.0.0/visNetwork/man/visConfigure.Rd | 83 visNetwork-2.0.0/visNetwork/man/visDocumentation.Rd | 65 visNetwork-2.0.0/visNetwork/man/visEdges.Rd | 351 visNetwork-2.0.0/visNetwork/man/visEvents.Rd | 261 visNetwork-2.0.0/visNetwork/man/visExport.Rd | 111 visNetwork-2.0.0/visNetwork/man/visFit.Rd | 79 visNetwork-2.0.0/visNetwork/man/visFocus.Rd | 91 visNetwork-2.0.0/visNetwork/man/visGetBoundingBox.Rd |only visNetwork-2.0.0/visNetwork/man/visGetConnectedEdges.Rd |only visNetwork-2.0.0/visNetwork/man/visGetConnectedNodes.Rd |only visNetwork-2.0.0/visNetwork/man/visGetEdges.Rd | 69 visNetwork-2.0.0/visNetwork/man/visGetNodes.Rd | 73 visNetwork-2.0.0/visNetwork/man/visGetPositions.Rd | 73 visNetwork-2.0.0/visNetwork/man/visGetScale.Rd |only visNetwork-2.0.0/visNetwork/man/visGetSelectedEdges.Rd |only visNetwork-2.0.0/visNetwork/man/visGetSelectedNodes.Rd |only visNetwork-2.0.0/visNetwork/man/visGetSelection.Rd |only visNetwork-2.0.0/visNetwork/man/visGetViewPosition.Rd |only visNetwork-2.0.0/visNetwork/man/visGroups.Rd | 83 visNetwork-2.0.0/visNetwork/man/visHierarchicalLayout.Rd | 113 visNetwork-2.0.0/visNetwork/man/visIgraphLayout.Rd | 183 visNetwork-2.0.0/visNetwork/man/visInteraction.Rd | 209 visNetwork-2.0.0/visNetwork/man/visLayout.Rd | 91 visNetwork-2.0.0/visNetwork/man/visLegend.Rd | 267 visNetwork-2.0.0/visNetwork/man/visMoveNode.Rd | 77 visNetwork-2.0.0/visNetwork/man/visNearestNodes.Rd | 77 visNetwork-2.0.0/visNetwork/man/visNetwork-collapse.Rd |only visNetwork-2.0.0/visNetwork/man/visNetwork-exports.Rd | 17 visNetwork-2.0.0/visNetwork/man/visNetwork-igraph.Rd | 209 visNetwork-2.0.0/visNetwork/man/visNetwork-shiny.Rd | 149 visNetwork-2.0.0/visNetwork/man/visNetwork-treeModule.Rd |only visNetwork-2.0.0/visNetwork/man/visNetwork.Rd | 423 visNetwork-2.0.0/visNetwork/man/visNodes.Rd | 338 visNetwork-2.0.0/visNetwork/man/visOptions.Rd | 370 visNetwork-2.0.0/visNetwork/man/visPhysics.Rd | 203 visNetwork-2.0.0/visNetwork/man/visRedraw.Rd | 65 visNetwork-2.0.0/visNetwork/man/visRemoveEdges.Rd | 75 visNetwork-2.0.0/visNetwork/man/visRemoveNodes.Rd | 75 visNetwork-2.0.0/visNetwork/man/visSave.Rd | 87 visNetwork-2.0.0/visNetwork/man/visSelectEdges.Rd | 69 visNetwork-2.0.0/visNetwork/man/visSelectNodes.Rd | 77 visNetwork-2.0.0/visNetwork/man/visSetData.Rd | 73 visNetwork-2.0.0/visNetwork/man/visSetOptions.Rd | 75 visNetwork-2.0.0/visNetwork/man/visSetSelection.Rd | 87 visNetwork-2.0.0/visNetwork/man/visSetTitle.Rd |only visNetwork-2.0.0/visNetwork/man/visStabilize.Rd | 69 visNetwork-2.0.0/visNetwork/man/visStartSimulation.Rd | 59 visNetwork-2.0.0/visNetwork/man/visStopSimulation.Rd | 59 visNetwork-2.0.0/visNetwork/man/visStorePositions.Rd |only visNetwork-2.0.0/visNetwork/man/visTree.Rd |only visNetwork-2.0.0/visNetwork/man/visTreeEditor.Rd |only visNetwork-2.0.0/visNetwork/man/visUnselectAll.Rd | 65 visNetwork-2.0.0/visNetwork/man/visUpdateEdges.Rd | 91 visNetwork-2.0.0/visNetwork/man/visUpdateNodes.Rd | 93 visNetwork-2.0.0/visNetwork/vignettes/Introduction-to-visNetwork.Rmd | 568 199 files changed, 26042 insertions(+), 23908 deletions(-)
Title: Reads, Annotates, and Normalizes Reverse Phase Protein Array
Data
Description: Reads in sample description and slide description files and
annotates the expression values taken from GenePix results files
(text file format used by many microarray scanner and software providers).
After normalization data can be visualized as boxplot, heatmap or dotplot.
Author: Heiko Mannsperger with contributions of Stephan Gade
Maintainer: Maren Sitte <maren.sitte@med.uni-goettingen.de>
Diff between RPPanalyzer versions 1.4.3 dated 2016-02-11 and 1.4.4 dated 2017-06-26
RPPanalyzer-1.4.3/RPPanalyzer/vignettes/Figure1.png |only RPPanalyzer-1.4.3/RPPanalyzer/vignettes/workflow_RPPanalyzer.png |only RPPanalyzer-1.4.4/RPPanalyzer/DESCRIPTION | 12 ++++---- RPPanalyzer-1.4.4/RPPanalyzer/MD5 | 14 +++++----- RPPanalyzer-1.4.4/RPPanalyzer/build/vignette.rds |binary RPPanalyzer-1.4.4/RPPanalyzer/inst/doc/RPPanalyzer.pdf |binary RPPanalyzer-1.4.4/RPPanalyzer/inst/doc/RPPanalyzer.rnw | 5 ++- RPPanalyzer-1.4.4/RPPanalyzer/vignettes/Figure1.jpg |only RPPanalyzer-1.4.4/RPPanalyzer/vignettes/RPPanalyzer.rnw | 5 ++- RPPanalyzer-1.4.4/RPPanalyzer/vignettes/workflow_RPPanalyzer.gif |only 10 files changed, 19 insertions(+), 17 deletions(-)
Title: 'Shiny' Applications for the R Package 'Luminescence'
Description: A collection of 'shiny' applications for the R package
'Luminescence'. These mainly, but not exclusively, include applications for
plotting chronometric data from e.g. luminescence or radiocarbon dating. It
further provides access to bootstraps tooltip and popover functionality and
contains the 'jscolor.js' library with a custom 'shiny' output binding.
Author: Christoph Burow [aut, cre],
Urs Tilmann Wolpert [aut],
Sebastian Kreutzer [aut],
R Luminescence Package Team [ctb],
Jan Odvarko [cph] (jscolor.js in www/jscolor),
AnalytixWare [cph] (ShinySky package),
RStudio [cph] (chooser_inputBinding.js in www/ and chooser.R in R/)
Maintainer: Christoph Burow <christoph.burow@uni-koeln.de>
Diff between RLumShiny versions 0.1.1 dated 2016-07-20 and 0.2.0 dated 2017-06-26
RLumShiny-0.1.1/RLumShiny/inst/shiny/KDE/www/file_containsHeader.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/KDE/www/file_sep.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/KDE/www/file_structure.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/abanico/www/file_containsHeader.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/abanico/www/file_sep.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/abanico/www/file_structure.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/cosmicdose/www/RL_Logo.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/cosmicdose/www/RL_Logo_alpha.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/doserecovery/www/file_containsHeader.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/doserecovery/www/file_sep.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/doserecovery/www/file_structure.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/histogram/www/file_containsHeader.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/histogram/www/file_sep.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/histogram/www/file_structure.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/radialplot/www/file_containsHeader.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/radialplot/www/file_sep.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/radialplot/www/file_structure.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/transformCW/www/file_containsHeader.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/transformCW/www/file_sep.png |only RLumShiny-0.1.1/RLumShiny/inst/shiny/transformCW/www/file_structure.png |only RLumShiny-0.2.0/RLumShiny/DESCRIPTION | 32 RLumShiny-0.2.0/RLumShiny/LICENSE.note | 3 RLumShiny-0.2.0/RLumShiny/MD5 | 124 RLumShiny-0.2.0/RLumShiny/NAMESPACE | 6 RLumShiny-0.2.0/RLumShiny/NEWS | 37 RLumShiny-0.2.0/RLumShiny/R/RLumShiny.R | 12 RLumShiny-0.2.0/RLumShiny/R/addin.R |only RLumShiny-0.2.0/RLumShiny/R/app_RLum.R | 74 RLumShiny-0.2.0/RLumShiny/R/chooser.R |only RLumShiny-0.2.0/RLumShiny/R/jscolor.R | 43 RLumShiny-0.2.0/RLumShiny/R/popover.R | 44 RLumShiny-0.2.0/RLumShiny/R/tooltip.R | 60 RLumShiny-0.2.0/RLumShiny/inst/rstudio |only RLumShiny-0.2.0/RLumShiny/inst/shiny/KDE/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/KDE/server.R | 258 - RLumShiny-0.2.0/RLumShiny/inst/shiny/KDE/shiny_bookmarks |only RLumShiny-0.2.0/RLumShiny/inst/shiny/KDE/ui.R | 571 +-- RLumShiny-0.2.0/RLumShiny/inst/shiny/KDE/www/style.css | 3 RLumShiny-0.2.0/RLumShiny/inst/shiny/abanico/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/abanico/server.R | 198 - RLumShiny-0.2.0/RLumShiny/inst/shiny/abanico/shiny_bookmarks |only RLumShiny-0.2.0/RLumShiny/inst/shiny/abanico/ui.R | 1703 ++++------ RLumShiny-0.2.0/RLumShiny/inst/shiny/abanico/www/style.css | 3 RLumShiny-0.2.0/RLumShiny/inst/shiny/cosmicdose/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/cosmicdose/server.R | 8 RLumShiny-0.2.0/RLumShiny/inst/shiny/cosmicdose/shiny_bookmarks |only RLumShiny-0.2.0/RLumShiny/inst/shiny/cosmicdose/ui.R | 230 - RLumShiny-0.2.0/RLumShiny/inst/shiny/cosmicdose/www/style.css | 2 RLumShiny-0.2.0/RLumShiny/inst/shiny/doserecovery/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/doserecovery/server.R | 145 RLumShiny-0.2.0/RLumShiny/inst/shiny/doserecovery/ui.R | 731 ++-- RLumShiny-0.2.0/RLumShiny/inst/shiny/doserecovery/www/style.css | 3 RLumShiny-0.2.0/RLumShiny/inst/shiny/filter |only RLumShiny-0.2.0/RLumShiny/inst/shiny/histogram/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/histogram/server.R | 144 RLumShiny-0.2.0/RLumShiny/inst/shiny/histogram/shiny_bookmarks |only RLumShiny-0.2.0/RLumShiny/inst/shiny/histogram/ui.R | 702 ++-- RLumShiny-0.2.0/RLumShiny/inst/shiny/histogram/www/style.css | 3 RLumShiny-0.2.0/RLumShiny/inst/shiny/radialplot/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/radialplot/server.R | 312 - RLumShiny-0.2.0/RLumShiny/inst/shiny/radialplot/shiny_bookmarks |only RLumShiny-0.2.0/RLumShiny/inst/shiny/radialplot/ui.R | 1185 +++--- RLumShiny-0.2.0/RLumShiny/inst/shiny/radialplot/www/style.css | 3 RLumShiny-0.2.0/RLumShiny/inst/shiny/transformCW/Global.R |only RLumShiny-0.2.0/RLumShiny/inst/shiny/transformCW/Server.R | 122 RLumShiny-0.2.0/RLumShiny/inst/shiny/transformCW/UI.R | 457 +- RLumShiny-0.2.0/RLumShiny/inst/shiny/transformCW/shiny_bookmarks |only RLumShiny-0.2.0/RLumShiny/inst/shiny/transformCW/www/style.css | 3 RLumShiny-0.2.0/RLumShiny/inst/www/chooser_inputBinding.js |only RLumShiny-0.2.0/RLumShiny/inst/www/jscolor/demo.html | 24 RLumShiny-0.2.0/RLumShiny/man/RLumShiny-package.Rd | 12 RLumShiny-0.2.0/RLumShiny/man/RLumShinyAddin.Rd |only RLumShiny-0.2.0/RLumShiny/man/app_RLum.Rd | 34 RLumShiny-0.2.0/RLumShiny/man/jscolorInput.Rd | 33 RLumShiny-0.2.0/RLumShiny/man/popover.Rd | 25 RLumShiny-0.2.0/RLumShiny/man/tooltip.Rd | 29 76 files changed, 3738 insertions(+), 3640 deletions(-)
Title: Predictive Approaches in Psychology
Description:
Recent years have seen an increased interest in novel methods
for analyzing quantitative data from experimental psychology. Currently, however, they lack an
established and accessible software framework. Many existing implementations provide no guidelines,
consisting of small code snippets, or sets of packages. In addition, the use of existing packages
often requires advanced programming experience. 'PredPsych' is a user-friendly toolbox based on
machine learning predictive algorithms. It comprises of multiple functionalities for multivariate
analyses of quantitative behavioral data based on machine learning models.
Author: Atesh Koul
Maintainer: Atesh Koul <atesh.koul@gmail.com>
Diff between PredPsych versions 0.1 dated 2017-02-15 and 0.2 dated 2017-06-26
DESCRIPTION | 10 MD5 | 40 +- NAMESPACE | 3 R/ClassPerm.R | 141 ++++++++- R/DTModel.R | 584 ++++++++++++++++++++++++++++++++--------- R/DimReduction.R | 12 R/LinearDA.R | 341 +++++++++++++++++------ R/ModelCluster.R | 20 + R/PredPsych-package.r | 11 R/classifyFun.R | 495 +++++++++++++++++++++++++++------- R/fscores.R | 25 + R/overallConfusionMetrics.R |only R/predictNewData.R |only man/ClassPerm.Rd | 69 ++++ man/DTModel.Rd | 107 ++++++- man/DimensionRed.Rd | 10 man/LinearDA.Rd | 83 ++++- man/ModelCluster.Rd | 14 man/PredPsych.Rd | 10 man/classifyFun.Rd | 88 +++++- man/fscore.Rd | 19 + man/overallConfusionMetrics.Rd |only man/predictNewData.Rd |only 23 files changed, 1675 insertions(+), 407 deletions(-)
More information about postlightmercury at CRAN
Permanent link
Title: Simulate Probabilistic Long-Term Effects in Models with Temporal
Dependence
Description: Calculates and depicts probabilistic long-term effects
in binary models with temporal dependence variables. The package performs
two tasks. First, it calculates the change in the probability of the event
occurring given a change in a theoretical variable. Second, it calculates
the rolling difference in the future probability of the event for two
scenarios: one where the event occurred at a given time and one where the
event does not occur. The package is consistent with the recent movement to
depict meaningful and easy-to-interpret quantities of interest with the
requisite measures of uncertainty. It is the first to make it easy for
researchers to interpret short- and long-term effects of explanatory
variables in binary autoregressive models, which can have important
implications for the correct interpretation of these models.
Author: Christopher Gandrud [aut, cre],
Laron K. Williams [aut]
Maintainer: Christopher Gandrud <christopher.gandrud@gmail.com>
Diff between pltesim versions 0.1.2 dated 2017-03-15 and 1.0 dated 2017-06-26
DESCRIPTION | 10 +++++----- MD5 | 28 +++++++++++++++------------- NEWS | 12 ++++++++++++ R/btscs.R | 15 +++++++++++---- R/negative.R | 11 ++++++++++- README.md | 27 ++++++++++++--------------- data/negative_year.tab |only man/btscs.Rd | 8 +++++--- man/figures/custom-baseline-1.png |binary man/figures/onetime-1.png |binary man/figures/perm-1.png |binary man/figures/temp-multievent-1.png |binary man/figures/temp-multievent-2.png |binary man/negative.Rd | 2 +- man/negative_year.Rd |only tests/testthat/test.R | 4 ++-- 16 files changed, 73 insertions(+), 44 deletions(-)
Title: Dynamic Hazard Models using State Space Models
Description: Contains functions that lets you fit dynamic hazard models with binary
outcomes using state space models. The methods are originally described in
Fahrmeir (1992) <doi:10.1080/01621459.1992.10475232> and Fahrmeir (1994)
<doi:10.1093/biomet/81.2.317>. The functions also provide an extension hereof where the
Extended Kalman filter is replaced by an Unscented Kalman filter. Models are
fitted with the regular coxph() like formula.
Author: Benjamin Christoffersen [cre, aut],
Alan Miller [cph],
Anthony Williams [cph],
Boost developers [cph],
R-core [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between dynamichazard versions 0.3.3 dated 2017-06-18 and 0.3.4 dated 2017-06-26
DESCRIPTION | 6 MD5 | 81 +- R/test_utils.R | 299 +++++----- inst/doc/Bootstrap_illustration.pdf |binary inst/doc/Comparing_methods_for_logistic_models.pdf |binary inst/doc/Diagnostics.pdf |binary inst/doc/Sim_study_with_logit.pdf |binary inst/doc/ddhazard.pdf |binary src/Cdqrls_wrapper.cpp | 26 src/arma_n_rcpp.h | 4 src/bigglm_wrapper.cpp | 6 src/bigglm_wrapper.h | 63 -- src/ddhazard_EKF_solver.cpp | 14 src/ddhazard_GMA_solver.cpp | 14 src/ddhazard_SMA_solver.cpp | 8 src/ddhazard_UKF_solver.cpp | 2 src/ddhazard_fit.cpp | 84 +- src/ddhazard_problem_data.h | 95 +-- tests/testthat.R | 15 tests/testthat/helper.R |only tests/testthat/testIWLS.R | 13 tests/testthat/testUKF.R | 19 tests/testthat/test_GMA.R | 18 tests/testthat/test_LAPACK_BLAS_wrapper.R | 19 tests/testthat/test_SMA.R | 8 tests/testthat/test_hatvalues.R | 8 tests/testthat/test_shiny_app.R | 7 tests/testthat/testbigglm_wrapper.R | 22 tests/testthat/testboot_est.R | 18 tests/testthat/testddhazard.R | 16 tests/testthat/testdesign_mat_and_risk_obj.R | 29 tests/testthat/testfixed_effects_like_recursive_least_squares.R | 18 tests/testthat/testfixed_terms_est_in_M_step.R | 20 tests/testthat/testloglike.R | 21 tests/testthat/testoptions.R | 14 tests/testthat/testplot.R | 23 tests/testthat/testpredict.R | 18 tests/testthat/testprint.R | 21 tests/testthat/testresiduals.R | 16 tests/testthat/teststatic_glm.R | 20 tests/testthat/testtest_utils.R | 26 tests/testthat/testweights.R | 22 42 files changed, 403 insertions(+), 710 deletions(-)
Title: Statistical Depth Functions for Multivariate Analysis
Description: Data depth concept offers a variety of powerful and user friendly
tools for robust exploration and inference for multivariate data. The offered
techniques may be successfully used in cases of lack of our knowledge on
parametric models generating data due to their nature. The
package consist of among others implementations of several data depth techniques
involving multivariate quantile-quantile plots, multivariate scatter estimators,
multivariate Wilcoxon tests and robust regressions.
Author: Zygmunt Zawadzki [aut, cre],
Daniel Kosiorowski [aut],
Krzysztof Slomczynski [ctb],
Mateusz Bocian [ctb],
Anna Wegrzynkiewicz [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between DepthProc versions 2.0.1 dated 2017-06-20 and 2.0.2 dated 2017-06-26
ChangeLog | 6 ++++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- src/UtilsCPP.cpp | 50 +++++++++++++++++++++++++------------------------- 4 files changed, 38 insertions(+), 32 deletions(-)
Title: A Modern and Flexible Web Client for R
Description: The curl() and curl_download() functions provide highly
configurable drop-in replacements for base url() and download.file() with
better performance, support for encryption (https, ftps), gzip compression,
authentication, and other 'libcurl' goodies. The core of the package implements a
framework for performing fully customized requests where data can be processed
either in memory, on disk, or streaming via the callback or connection
interfaces. Some knowledge of 'libcurl' is recommended; for a more-user-friendly
web client see the 'httr' package which builds on this package with http
specific tools and logic.
Author: Jeroen Ooms [cre, aut],
Hadley Wickham [ctb],
RStudio [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between curl versions 2.6 dated 2017-04-27 and 2.7 dated 2017-06-26
DESCRIPTION | 6 ++--- MD5 | 29 +++++++++++++------------- NAMESPACE | 2 + NEWS | 7 ++++++ R/nslookup.R | 7 ++++-- R/parse_headers.R | 26 +++++++++++++++++++++-- R/utilities.R | 6 +++++ inst/doc/intro.html | 47 +++++++++++++++++++++---------------------- man/nslookup.Rd | 6 +++-- man/parse_headers.Rd | 18 +++++++++++++--- src/handle.c | 2 + src/multi.c | 2 + src/nslookup.c | 39 +++++++++++++++++++++++++---------- src/split.c |only src/utils.c | 14 ++++++++---- tests/testthat/test-escape.R | 13 +++++++++++ 16 files changed, 158 insertions(+), 66 deletions(-)
Title: Test Coverage for Packages
Description: Track and report code coverage for your package and (optionally)
upload the results to a coverage service like 'Codecov' <http://codecov.io> or
'Coveralls' <http://coveralls.io>. Code coverage is a measure of the amount of
code being exercised by a set of tests. It is an indirect measure of test
quality and completeness. This package is compatible with any testing
methodology or framework and tracks coverage of both R code and compiled
C/C++/FORTRAN code.
Author: Jim Hester [aut, cre],
Willem Ligtenberg [ctb],
Kirill Müller [ctb],
Henrik Bengtsson [ctb],
Steve Peak [ctb],
Kirill Sevastyanenko [ctb],
Jon Clayden [ctb],
Robert Flight [ctb],
Eric Brown [ctb],
Brodie Gaslam [ctb],
Will Beasley [ctb],
Robert Krzyzanowski [ctb],
Markus Wamser [ctb],
Karl Forner [ctb],
Gergely Daróczi [ctb],
Jouni Helske [ctb],
Kun Ren [ctb],
Jeroen Ooms [ctb],
Ken Williams [ctb],
Chris Campbell [ctb],
David Hugh-Jones [ctb],
Qin Wang [ctb]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between covr versions 2.2.2 dated 2017-01-05 and 3.0.0 dated 2017-06-26
covr-2.2.2/covr/LICENSE |only covr-3.0.0/covr/DESCRIPTION | 24 +++--- covr-3.0.0/covr/MD5 | 48 ++++++------- covr-3.0.0/covr/NAMESPACE | 3 covr-3.0.0/covr/NEWS.md | 8 ++ covr-3.0.0/covr/R/compiled.R | 59 ++++++++-------- covr-3.0.0/covr/R/covr.R | 91 ++++++++++++++++--------- covr-3.0.0/covr/R/data_frame.R | 2 covr-3.0.0/covr/R/display_name.R | 4 - covr-3.0.0/covr/R/exclusions.R | 25 ++---- covr-3.0.0/covr/R/icc.R |only covr-3.0.0/covr/R/replace.R | 4 - covr-3.0.0/covr/R/report.R | 6 - covr-3.0.0/covr/R/summary_functions.R | 10 +- covr-3.0.0/covr/R/trace_calls.R | 2 covr-3.0.0/covr/R/utils.R | 15 +++- covr-3.0.0/covr/R/value.R | 2 covr-3.0.0/covr/R/zzz.R | 20 +++++ covr-3.0.0/covr/README.md | 4 - covr-3.0.0/covr/build/vignette.rds |binary covr-3.0.0/covr/inst/doc/how_it_works.html | 32 ++++---- covr-3.0.0/covr/man/package_coverage.Rd | 14 +-- covr-3.0.0/covr/src/reassign.c | 24 ++++-- covr-3.0.0/covr/tests/testthat/test-covr.R | 2 covr-3.0.0/covr/tests/testthat/test-parallel.R | 2 covr-3.0.0/covr/tests/testthat/test-utils.R | 8 ++ 26 files changed, 248 insertions(+), 161 deletions(-)
Title: R Bindings for 'ZeroMQ'
Description: Interface to the 'ZeroMQ' lightweight messaging kernel (see <http://www.zeromq.org/> for more information).
Author: Whit Armstrong [aut],
Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between rzmq versions 0.9.1 dated 2017-03-23 and 0.9.2 dated 2017-06-26
DESCRIPTION | 16 ++++++++-------- MD5 | 7 ++++--- NEWS |only R/rzmq.R | 2 +- src/interface.cpp | 4 ++++ 5 files changed, 17 insertions(+), 12 deletions(-)
Title: Downloads and Organizes Financial Data for Multiple Tickers
Description: Makes it easy to download a large number of trade data from Yahoo or Google Finance.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between BatchGetSymbols versions 1.1 dated 2016-12-05 and 1.2 dated 2017-06-26
DESCRIPTION | 10 MD5 | 26 +- NEWS.md | 4 R/BatchGetSymbols.R | 328 +++++++++++++++---------------- R/GetSP500Stocks.R | 60 ++--- R/OnAttach.R | 1 build/vignette.rds |binary inst/doc/BatchGetSymbols-vignette.R | 84 ++++---- inst/doc/BatchGetSymbols-vignette.Rmd | 164 +++++++-------- inst/doc/BatchGetSymbols-vignette.html | 343 ++++++++++++++++----------------- man/BatchGetSymbols.Rd | 108 +++++----- man/GetSP500Stocks.Rd | 3 man/myGetSymbols.Rd | 1 vignettes/BatchGetSymbols-vignette.Rmd | 164 +++++++-------- 14 files changed, 648 insertions(+), 648 deletions(-)
More information about BatchGetSymbols at CRAN
Permanent link
Title: Utilities for Generating SQL Queries from Model Objects
Description: Provides utilities for generating SQL queries (particularly CREATE
TABLE statements) from R model objects. The most important use case is
generating SQL to score a generalized linear model or related model
represented as an R object, in which case the package handles parsing
formula operators and including the model's response function.
Author: William Brannon [aut, cre]
Maintainer: William Brannon <wwbrannon@email.wm.edu>
Diff between sqlscore versions 0.1.1 dated 2017-01-07 and 0.1.2 dated 2017-06-26
DESCRIPTION | 10 - LICENSE | 2 MD5 | 45 +++---- NAMESPACE | 12 - NEWS.md | 6 R/extract_coef.R | 34 ++--- R/extract_factors.R | 22 +-- R/linkfun.R |only R/score_expression.R | 208 ++------------------------------- R/sqlscore.R | 127 ++++++++++---------- R/utils.R | 47 ++++++- README.md | 2 man/create_statement.Rd | 6 man/linpred.Rd | 2 man/score_expression.Rd | 22 --- man/select_statement.Rd | 6 man/sqlscore.Rd | 2 tests/testthat/helper-functions.R | 2 tests/testthat/test-create_statement.R | 7 - tests/testthat/test-extract_coef.R | 39 ++++-- tests/testthat/test-extract_factors.R | 12 - tests/testthat/test-extract_offsets.R | 14 +- tests/testthat/test-fqtn.R | 15 +- tests/testthat/test-score_expression.R | 14 +- 24 files changed, 258 insertions(+), 398 deletions(-)
Title: Use and Explore CRU CL v. 2.0 Climatology Elements in R
Description: Provides functions that automate downloading and importing
University of East Anglia Climate Research Unit (CRU) CL v. 2.0 climatology
data into R, facilitates the calculation of minimum temperature and maximum
temperature and formats the data into a tidy data frame as a tibble or a
list of raster stack objects for use in an R session. CRU CL v. 2.0 data
are a gridded climatology of 1961-1990 monthly means released in 2002 and
cover all land areas (excluding Antarctica) at 10 arcminutes
(0.1666667 degree) resolution. For more information see the description of
the data provided by the University of East Anglia Climate Research Unit,
<https://crudata.uea.ac.uk/cru/data/hrg/tmc/readme.txt>.
Author: Adam Sparks [aut, cre] (http://orcid.org/0000-0002-0061-8359)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between getCRUCLdata versions 0.1.6 dated 2017-06-13 and 0.1.7 dated 2017-06-26
DESCRIPTION | 10 ++++---- MD5 | 38 +++++++++++++++++---------------- NEWS.md | 13 +++++++++++ R/get_CRU.R | 9 +++---- R/get_CRU_df.R | 9 ------- R/get_CRU_stack.R | 9 ------- R/manage_cached_files.R | 16 ++++++------- R/set_cache.R |only README.md | 15 ++++++------- inst/doc/getCRUCLdata.R | 4 +-- inst/doc/getCRUCLdata.Rmd | 4 +-- inst/doc/getCRUCLdata.html | 4 +-- tests/testthat/test-create_CRU_df.R | 4 +-- tests/testthat/test-create_CRU_stack.R | 4 +-- tests/testthat/test-create_df.R | 6 ++--- tests/testthat/test-create_stack.R | 10 ++++---- tests/testthat/test-get_CRU_df.R | 4 +-- tests/testthat/test-get_CRU_stack.R | 4 +-- tests/testthat/test_get_local.R | 4 +-- tests/testthat/test_set_cache.R |only vignettes/getCRUCLdata.Rmd | 4 +-- 21 files changed, 85 insertions(+), 86 deletions(-)