Sat, 15 Jul 2017

New package vennLasso with initial version 0.1
Package: vennLasso
Type: Package
Title: Variable Selection for Heterogeneous Populations
Version: 0.1
Date: 2017-07-05
Authors@R: c( person("Jared", "Huling", , "jaredhuling@gmail.com", c("aut", "cre")), person("Muxuan", "Liang", , , c("ctb")), person("Yixuan", "Qiu", , , c("cph")) )
Description: Provides variable selection and estimation routines for models stratified based on binary factors.
URL: https://github.com/jaredhuling/vennLasso
BugReports: https://github.com/jaredhuling/vennLasso/issues
License: GPL (>= 2)
LazyData: TRUE
Depends: R (>= 3.2.0)
Imports: Rcpp (>= 0.11.0), foreach, survival, MASS, Matrix, VennDiagram, visNetwork, igraph, methods
LinkingTo: Rcpp, RcppEigen, RcppNumerical
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2017-07-15 15:16:28 UTC; Jared
Author: Jared Huling [aut, cre], Muxuan Liang [ctb], Yixuan Qiu [cph]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Repository: CRAN
Date/Publication: 2017-07-15 21:06:36 UTC

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New package tetraclasse with initial version 0.1.21
Package: tetraclasse
Type: Package
Title: Satisfaction Analysis using Tetraclasse Model and Llosa Matrix
Version: 0.1.21
Author: vincent guyader
Maintainer: vincent guyader <vincent@thinkr.fr>
Description: The satisfaction Analysis using the tetraclasse model from Sylvie Llosa. Llosa (1997) <http://www.jstor.org/stable/40592578>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: ggplot2, reshape2, tidyr, FactoMineR, magrittr, tibble, ggrepel, dplyr
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-07-15 13:46:16 UTC; vincent
Repository: CRAN
Date/Publication: 2017-07-15 21:14:59 UTC

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Permanent link

Package liquidSVM updated to version 1.2.0 with previous version 1.0.1 dated 2017-03-02

Title: A Fast and Versatile SVM Package
Description: Support vector machines (SVMs) and related kernel-based learning algorithms are a well-known class of machine learning algorithms, for non-parametric classification and regression. liquidSVM is an implementation of SVMs whose key features are: fully integrated hyper-parameter selection, extreme speed on both small and large data sets, full flexibility for experts, and inclusion of a variety of different learning scenarios: multi-class classification, ROC, and Neyman-Pearson learning, and least-squares, quantile, and expectile regression.
Author: Ingo Steinwart, Philipp Thomann
Maintainer: Philipp Thomann <philipp.thomann@mathematik.uni-stuttgart.de>

Diff between liquidSVM versions 1.0.1 dated 2017-03-02 and 1.2.0 dated 2017-07-15

 liquidSVM-1.0.1/liquidSVM/vignettes/md/command-args-svm-select.md                           |only
 liquidSVM-1.0.1/liquidSVM/vignettes/md/command-args-svm-test.md                             |only
 liquidSVM-1.0.1/liquidSVM/vignettes/md/command-args-svm-train.md                            |only
 liquidSVM-1.2.0/liquidSVM/DESCRIPTION                                                       |   30 
 liquidSVM-1.2.0/liquidSVM/MD5                                                               |  287 ++++----
 liquidSVM-1.2.0/liquidSVM/NAMESPACE                                                         |    1 
 liquidSVM-1.2.0/liquidSVM/R/kernel.R                                                        |    5 
 liquidSVM-1.2.0/liquidSVM/R/liquidData.R                                                    |    6 
 liquidSVM-1.2.0/liquidSVM/R/liquidSVM.R                                                     |  118 ++-
 liquidSVM-1.2.0/liquidSVM/R/mlr.R                                                           |   88 +-
 liquidSVM-1.2.0/liquidSVM/R/model.R                                                         |   15 
 liquidSVM-1.2.0/liquidSVM/R/scenarios.R                                                     |   20 
 liquidSVM-1.2.0/liquidSVM/README.md                                                         |    2 
 liquidSVM-1.2.0/liquidSVM/build/vignette.rds                                                |binary
 liquidSVM-1.2.0/liquidSVM/configure                                                         |   21 
 liquidSVM-1.2.0/liquidSVM/inst/CITATION                                                     |    2 
 liquidSVM-1.2.0/liquidSVM/inst/doc/demo.R                                                   |   38 +
 liquidSVM-1.2.0/liquidSVM/inst/doc/demo.Rmd                                                 |   37 +
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 liquidSVM-1.2.0/liquidSVM/inst/doc/demo_cache                                               |only
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 liquidSVM-1.2.0/liquidSVM/inst/doc/md/global-and-grid.md                                    |    9 
 liquidSVM-1.2.0/liquidSVM/man/Configuration.Rd                                              |    7 
 liquidSVM-1.2.0/liquidSVM/man/banana.Rd                                                     |    5 
 liquidSVM-1.2.0/liquidSVM/man/bsSVM.Rd                                                      |    1 
 liquidSVM-1.2.0/liquidSVM/man/clean.liquidSVM.Rd                                            |    3 
 liquidSVM-1.2.0/liquidSVM/man/command-args.Rd                                               |    1 
 liquidSVM-1.2.0/liquidSVM/man/compilationInfo.Rd                                            |    1 
 liquidSVM-1.2.0/liquidSVM/man/errors.Rd                                                     |    1 
 liquidSVM-1.2.0/liquidSVM/man/exSVM.Rd                                                      |    1 
 liquidSVM-1.2.0/liquidSVM/man/getCover.Rd                                                   |    1 
 liquidSVM-1.2.0/liquidSVM/man/getSolution.Rd                                                |    1 
 liquidSVM-1.2.0/liquidSVM/man/init.liquidSVM.Rd                                             |   14 
 liquidSVM-1.2.0/liquidSVM/man/kern.Rd                                                       |    4 
 liquidSVM-1.2.0/liquidSVM/man/liquidData.Rd                                                 |    4 
 liquidSVM-1.2.0/liquidSVM/man/liquidSVM-class.Rd                                            |    1 
 liquidSVM-1.2.0/liquidSVM/man/liquidSVM-package.Rd                                          |   26 
 liquidSVM-1.2.0/liquidSVM/man/lsSVM.Rd                                                      |    1 
 liquidSVM-1.2.0/liquidSVM/man/mcSVM.Rd                                                      |   14 
 liquidSVM-1.2.0/liquidSVM/man/mlr-liquidSVM.Rd                                              |   17 
 liquidSVM-1.2.0/liquidSVM/man/nplSVM.Rd                                                     |    1 
 liquidSVM-1.2.0/liquidSVM/man/plotROC.Rd                                                    |    1 
 liquidSVM-1.2.0/liquidSVM/man/predict.liquidSVM.Rd                                          |   12 
 liquidSVM-1.2.0/liquidSVM/man/print.liquidSVM.Rd                                            |    1 
 liquidSVM-1.2.0/liquidSVM/man/qtSVM.Rd                                                      |    1 
 liquidSVM-1.2.0/liquidSVM/man/read.liquidSVM.Rd                                             |    3 
 liquidSVM-1.2.0/liquidSVM/man/reg-1d.Rd                                                     |    3 
 liquidSVM-1.2.0/liquidSVM/man/rocSVM.Rd                                                     |    1 
 liquidSVM-1.2.0/liquidSVM/man/selectSVMs.Rd                                                 |    8 
 liquidSVM-1.2.0/liquidSVM/man/setDisplay.Rd                                                 |    1 
 liquidSVM-1.2.0/liquidSVM/man/svm.Rd                                                        |   12 
 liquidSVM-1.2.0/liquidSVM/man/test.liquidSVM.Rd                                             |   14 
 liquidSVM-1.2.0/liquidSVM/man/trainSVMs.Rd                                                  |  159 ++--
 liquidSVM-1.2.0/liquidSVM/man/write.liquidData.Rd                                           |    1 
 liquidSVM-1.2.0/liquidSVM/src/Makevars.in                                                   |    2 
 liquidSVM-1.2.0/liquidSVM/src/liquidSVM.cpp                                                 |   70 +-
 liquidSVM-1.2.0/liquidSVM/src/liquidSVM.h                                                   |    4 
 liquidSVM-1.2.0/liquidSVM/src/liquidSVM_R.cpp                                               |   36 -
 liquidSVM-1.2.0/liquidSVM/src/scenario_config.cpp                                           |   17 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_functions/basic_file_functions.cpp       |   74 +-
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_functions/basic_file_functions.h         |   14 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_functions/flush_print.cpp                |    9 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/cache_lru.h                        |   14 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/dataset.cpp                        |  117 ++-
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/dataset.h                          |   11 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/dataset.ins.cpp                    |    7 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/dataset_info.cpp                   |   82 +-
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 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/sample.cpp                         |  320 ++++++----
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/sample.h                           |   23 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/sample.ins.cpp                     |    1 
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 liquidSVM-1.2.0/liquidSVM/src/sources/shared/command_line/command_line_parser.cpp           |   87 +-
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/command_line/command_line_parser.h             |   10 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/kernel/kernel.cpp                              |   33 -
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/kernel/kernel.h                                |    1 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/kernel/kernel_computation.cu                   |   24 
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 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/cuda_memory_operations.h        |    4 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/cuda_memory_operations.ins.cpp  |   40 +
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/cuda_simple_vector_operations.h |   18 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/memory_allocation.cpp           |   18 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/memory_allocation.ins.cpp       |   18 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/os_specifics.h                  |    8 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/parallel_control.cpp            |   19 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/parallel_control.h              |    1 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/simd_basics.h                   |   40 -
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/thread_manager.cpp              |   19 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/thread_manager.h                |    4 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/thread_manager.ins.cpp          |   13 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/thread_manager_active.cpp       |    4 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/timing.ins.cpp                  |   56 +
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/cv_manager.ins.cpp         |   10 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/fold_control.h             |    2 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/fold_manager.cpp           |   33 +
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/fold_manager.h             |    1 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/grid.ins.cpp               |   35 -
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/grid_control.cpp           |    4 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/grid_control.h             |    2 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/train_val_info.cpp         |   22 
 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/train_val_info.h           |    4 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_select.cpp   |    6 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_select.h     |    2 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_test.cpp     |   10 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_test.h       |    4 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_train.cpp    |   13 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_train.h      |    2 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/main/svm-select.cpp                               |    2 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/main/svm-test.cpp                                 |    8 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/main/svm-train.cpp                                |    2 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/basic_svm.cpp                              |   22 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/expectile_svm.cpp                          |   21 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/generic_2D_svm.ins.cpp                     |   11 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/hinge_svm.cpp                              |   57 +
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/least_squares_svm.cpp                      |   18 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/quantile_svm.cpp                           |   19 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/svm_solver_control.h                       |   10 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/template_svm.cpp                           |   21 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/training_validation/svm_cv_manager.ins.cpp        |    7 
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/training_validation/svm_manager.cpp               |   41 +
 liquidSVM-1.2.0/liquidSVM/src/sources/svm/training_validation/svm_manager.h                 |    6 
 liquidSVM-1.2.0/liquidSVM/src/sources/tools/change-labels.cpp                               |   52 -
 liquidSVM-1.2.0/liquidSVM/src/sources/tools/convert-data.cpp                                |   79 --
 liquidSVM-1.2.0/liquidSVM/src/sources/tools/create-tt.cpp                                   |   46 -
 liquidSVM-1.2.0/liquidSVM/src/sources/tools/data-stats.cpp                                  |   23 
 liquidSVM-1.2.0/liquidSVM/src/sources/tools/liquid-info.cpp                                 |only
 liquidSVM-1.2.0/liquidSVM/src/sources/tools/scale-data.cpp                                  |   19 
 liquidSVM-1.2.0/liquidSVM/tests/testthat.R                                                  |    2 
 liquidSVM-1.2.0/liquidSVM/tests/testthat/test-bugs.R                                        |    4 
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 liquidSVM-1.2.0/liquidSVM/tests/testthat/test-model.R                                       |  108 +++
 liquidSVM-1.2.0/liquidSVM/tests/testthat/test-quick.R                                       |   91 ++
 liquidSVM-1.2.0/liquidSVM/tests/testthat/test-scenarios.R                                   |  176 ++++-
 liquidSVM-1.2.0/liquidSVM/vignettes/demo.Rmd                                                |   37 +
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 149 files changed, 2533 insertions(+), 1437 deletions(-)

More information about liquidSVM at CRAN
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New package aiRthermo with initial version 1.0
Package: aiRthermo
Type: Package
Title: Atmospheric Thermodynamics and Visualization
Version: 1.0
Date: 2017-07-11
Author: Jon Sáenz, Santos J. González-Rojí, Sheila Carreno-Madinabeitia and Gabriel Ibarra-Berastegi
Maintainer: Santos J. González-Rojí <santosjose.gonzalez@ehu.eus>
Description: Deals with many computations related to the thermodynamics of atmospheric processes. It includes many functions designed to consider the density of air with varying degrees of water vapour in it, saturation pressures and mixing ratios, conversion of moisture indices, computation of atmospheric states of parcels subject to dry or pseudoadiabatic vertical evolutions and atmospheric instability indices that are routinely used for operational weather forecasts or meteorological diagnostics.
License: GPL-3
Encoding: UTF-8
Repository: CRAN
NeedsCompilation: yes
Packaged: 2017-07-15 12:17:49 UTC; Santitxu
Date/Publication: 2017-07-15 21:03:26 UTC

More information about aiRthermo at CRAN
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Package SEMID updated to version 0.3.0 with previous version 0.2 dated 2015-12-18

Title: Identifiability of Linear Structural Equation Models
Description: Provides routines to check identifiability or non-identifiability of linear structural equation models as described in Drton, Foygel, and Sullivant (2011) <DOI:10.1214/10-AOS859>, Foygel, Draisma, and Drton (2012) <DOI:10.1214/12-AOS1012>, and other works. The routines are based on the graphical representation of structural equation models by a path diagram/mixed graph.
Author: Rina Foygel Barber [aut], Mathias Drton [aut], Luca Weihs [cre]
Maintainer: Luca Weihs <lucaw@uw.edu>

Diff between SEMID versions 0.2 dated 2015-12-18 and 0.3.0 dated 2017-07-15

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Package retistruct updated to version 0.5.11 with previous version 0.5.10 dated 2015-02-16

Title: Retinal Reconstruction Program
Description: Reconstructs retinae by morphing a flat surface with cuts (a dissected flat-mount retina) onto a curvilinear surface (the standard retinal shape). It can estimate the position of a point on the intact adult retina to within 8 degrees of arc (3.6% of nasotemporal axis). The coordinates in reconstructed retinae can be transformed to visuotopic coordinates.
Author: David C. Sterratt [aut, cre, cph], Daniel Lyngholm [aut, cph]
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>

Diff between retistruct versions 0.5.10 dated 2015-02-16 and 0.5.11 dated 2017-07-15

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More information about retistruct at CRAN
Permanent link

Package js updated to version 1.0 with previous version 0.2 dated 2015-02-24

Title: Tools for Working with JavaScript in R
Description: A set of utilities for working with JavaScript syntax in R. Includes tools to parse, tokenize, compile, validate, reformat, optimize and analyze JavaScript code.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>

Diff between js versions 0.2 dated 2015-02-24 and 1.0 dated 2017-07-15

 DESCRIPTION               |   20 +-
 MD5                       |   33 +--
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More information about js at CRAN
Permanent link

Package IPMRF updated to version 1.1 with previous version 1.0 dated 2017-05-05

Title: Intervention in Prediction Measure (IPM) for Random Forests
Description: Computes IPM for assessing variable importance for random forests. See details at I. Epifanio (2017) <DOI:10.1186/s12859-017-1650-8>.
Author: Irene Epifanio, Stefano Nembrini
Maintainer: Irene Epifanio <epifanio@uji.es>

Diff between IPMRF versions 1.0 dated 2017-05-05 and 1.1 dated 2017-07-15

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More information about IPMRF at CRAN
Permanent link

New package DrImpute with initial version 1.0
Package: DrImpute
Version: 1.0
Date: 2017-7-15
Title: Imputing Dropout Events in Single-Cell RNA-Sequencing Data
Description: R codes for imputing dropout events. Many statistical methods in cell type identification, visualization and lineage reconstruction do not account for dropout events ('PCAreduce', 'SC3', 'PCA', 't-SNE', 'Monocle', 'TSCAN', etc). 'DrImpute' can improve the performance of such software by imputing dropout events.
Author: Il-Youp Kwak with contributions from Wuming Gong
Maintainer: Il-Youp Kwak <ilyoup.kwak@gmail.com>
Depends: R (>= 3.1.0)
Imports: Rcpp
Suggests: knitr, rmarkdown, devtools, roxygen2, irlba
License: GPL-3
VignetteBuilder: knitr
URL: https://github.com/ikwak2/DrImpute
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 6.0.1
NeedsCompilation: yes
Packaged: 2017-07-15 12:47:22 UTC; ikwak
Repository: CRAN
Date/Publication: 2017-07-15 21:00:01 UTC

More information about DrImpute at CRAN
Permanent link

Package datastructures updated to version 0.2.0 with previous version 0.1.0 dated 2017-07-09

Title: Implementation of Core Data Structures
Description: Implementation of advanced data structures such as hashmaps, heaps, or queues. Advanced data structures are essential in many computer science and statistics problems, for example graph algorithms or string analysis. The package uses 'Boost' and 'STL' data types and extends these to R with 'Rcpp' modules.
Author: Simon Dirmeier [aut, cre]
Maintainer: Simon Dirmeier <simon.dirmeier@gmx.de>

Diff between datastructures versions 0.1.0 dated 2017-07-09 and 0.2.0 dated 2017-07-15

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New package CINNA with initial version 1.0.0
Package: CINNA
Type: Package
Title: Deciphering Central Informative Nodes in Network Analysis
Version: 1.0.0
Date: 2017-07-04
Author: Minoo Ashtiani[aut], Mohieddin Jafari[aut,cre]
Maintainer: Minoo Ashtiani <m_ashtiani@pasteur.ac.ir>
Description: Functions for computing, comparing and demonstrating top informative centrality measures within a network.
License: GPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
Imports: igraph, network, sna, centiserve, FactoMineR, factoextra, GGally, pheatmap, corrplot, dendextend, circlize, viridis, ggplot2, Rtsne, qdapTools, plyr
NeedsCompilation: no
Packaged: 2017-07-15 14:49:16 UTC; MINoOo
Repository: CRAN
Date/Publication: 2017-07-15 21:00:03 UTC

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New package randomForestExplainer with initial version 0.9
Package: randomForestExplainer
Title: Explaining and Visualizing Random Forests in Terms of Variable Importance
Version: 0.9
Authors@R: c( person("Aleksandra", "Paluszynska", email = "ola.paluszynska@gmail.com", role = c("aut", "cre")), person("Przemyslaw", "Biecek", email = "przemyslaw.biecek@gmail.com", role = c("aut","ths")) )
Description: A set of tools to help explain which variables are most important in a random forests. Various variable importance measures are calculated and visualized in different settings in order to get an idea on how their importance changes depending on our criteria (Hemant Ishwaran and Udaya B. Kogalur and Eiran Z. Gorodeski and Andy J. Minn and Michael S. Lauer (2010) <doi:10.1198/jasa.2009.tm08622>, Leo Breiman (2001) <doi:10.1023/A:1010933404324>).
Depends: R (>= 3.0)
License: GPL
Encoding: UTF-8
LazyData: true
Imports: data.table (>= 1.10.4), dplyr (>= 0.7.1), dtplyr (>= 0.0.2), DT (>= 0.2), GGally (>= 1.3.0), ggplot2 (>= 2.2.1), ggrepel (>= 0.6.5), MASS (>= 7.3.47), randomForest (>= 4.6.12), reshape2 (>= 1.4.2), rmarkdown (>= 1.5)
Suggests: knitr
VignetteBuilder: knitr
RoxygenNote: 6.0.1
URL: https://github.com/MI2DataLab/randomForestExplainer
NeedsCompilation: no
Packaged: 2017-07-15 17:04:58 UTC; Ola
Author: Aleksandra Paluszynska [aut, cre], Przemyslaw Biecek [aut, ths]
Maintainer: Aleksandra Paluszynska <ola.paluszynska@gmail.com>
Repository: CRAN
Date/Publication: 2017-07-15 18:42:37 UTC

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New package parlitools with initial version 0.1.0
Package: parlitools
Type: Package
Title: Tools for Analysing UK Politics
Date: 2017-07-15
Version: 0.1.0
Authors@R: person("Evan Odell", email="evanodell91@gmail.com", role=c("aut", "cre"))
Author: Evan Odell [aut, cre]
Maintainer: Evan Odell <evanodell91@gmail.com>
Description: Provides various tools for analysing UK political data, including creating political cartograms and retrieving data.
URL: http://docs.evanodell.com/parlitools
BugReports: https://github.com/EvanOdell/parlitools/issues
License: MIT + file LICENSE
LazyData: TRUE
Depends: R(>= 2.10.0)
Imports: mnis, hansard, dplyr, utils, tibble, httr, jsonlite, stringi, sf
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, testthat, covr, rgdal, devtools, leaflet, htmltools, cartogram, htmlwidgets
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-07-15 10:44:18 UTC; evanodell
Repository: CRAN
Date/Publication: 2017-07-15 12:20:09 UTC

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Package mapedit updated to version 0.3.2 with previous version 0.3.0 dated 2017-06-29

Title: Interactive Editing of Spatial Data in R
Description: Suite of interactive functions and helpers for selecting and editing geospatial data.
Author: Tim Appelhans [aut, cre], Kenton Russell [aut]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>

Diff between mapedit versions 0.3.0 dated 2017-06-29 and 0.3.2 dated 2017-07-15

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 8 files changed, 102 insertions(+), 60 deletions(-)

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Package dynamichazard updated to version 0.3.5 with previous version 0.3.4 dated 2017-06-26

Title: Dynamic Hazard Models using State Space Models
Description: Contains functions that lets you fit dynamic hazard models with binary outcomes using state space models. The methods are originally described in Fahrmeir (1992) <doi:10.1080/01621459.1992.10475232> and Fahrmeir (1994) <doi:10.1093/biomet/81.2.317>. The functions also provide an extension hereof where the Extended Kalman filter is replaced by an Unscented Kalman filter. Models are fitted with the regular coxph() like formula.
Author: Benjamin Christoffersen [cre, aut], Alan Miller [cph], Anthony Williams [cph], Boost developers [cph], R-core [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>

Diff between dynamichazard versions 0.3.4 dated 2017-06-26 and 0.3.5 dated 2017-07-15

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 dynamichazard-0.3.5/dynamichazard/src/ddhazard_GMA_solver.cpp                                  |    8 
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New package ambhasGW with initial version 0.0.1
Package: ambhasGW
Title: Ground Water Modelling
Version: 0.0.1
Authors@R: c( person("Sat", "Tomer", email = "sat.kumar@aapahinnovations.com", role = c("aut", "cre")), person("Sekhar", "Muddu", email="muddu@civil.iisc.ernet.in", role="aut"), person("Vishal", "Mehta", email="vishal.mehta@sei-us.org", role="aut"), person("Subash", "Yegina", email="subash.yeggina@gmail.com", role="aut"), person("Thiyaku", "S.", email = "thiyaku@aapahinnovations.com", role = c("aut")))
Description: Implements distributed transient groundwater modelling. The model is based on the groundwater flow equation solved numerically using the finite difference explicit scheme.
Depends: R (>= 3.2.3)
Imports: yaml, raster, stats, rgdal
License: GPL (>= 3)
Repository: CRAN
Encoding: UTF-8
RoxygenNote: 6.0.1.9000
NeedsCompilation: no
Packaged: 2017-07-15 11:10:02 UTC; thiyaku
Author: Sat Tomer [aut, cre], Sekhar Muddu [aut], Vishal Mehta [aut], Subash Yegina [aut], Thiyaku S. [aut]
Maintainer: Sat Tomer <sat.kumar@aapahinnovations.com>
Date/Publication: 2017-07-15 12:15:48 UTC

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Package Rcpp updated to version 0.12.12 with previous version 0.12.11 dated 2017-05-22

Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see 'citation("Rcpp")' for details on these last two.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou, Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between Rcpp versions 0.12.11 dated 2017-05-22 and 0.12.12 dated 2017-07-15

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 inst/include/RcppCommon.h                               |   12 
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 src/api.cpp                                             |    4 
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 35 files changed, 1225 insertions(+), 1059 deletions(-)

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New package centiserve with initial version 1.0.0
Package: centiserve
Type: Package
Title: Find Graph Centrality Indices
Version: 1.0.0
Depends: igraph (>= 0.7.1), Matrix (>= 1.1-4)
Date: 2017-07-15
Author: Mahdi Jalili <m_jalili@farabi.tums.ac.ir>
Maintainer: Mahdi Jalili <m_jalili@farabi.tums.ac.ir>
Description: Calculates centrality indices additional to the 'igraph' package centrality functions.
License: GPL (>= 2)
Suggests: expm (>= 0.99-1.1), linkcomm (>= 1.0-11)
URL: http://www.centiserver.org/
BugReports: http://www.centiserver.org/?q1=contact
Packaged: 2017-07-15 09:19:59 UTC; Mahdi
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2017-07-15 09:34:41 UTC

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New package TSF with initial version 0.1.1
Package: TSF
Type: Package
Title: Two Stage Forecasting (TSF) for Long Memory Time Series in Presence of Structural Break
Version: 0.1.1
Author: Sandipan Samanta, Ranjit Kumar Paul and Dipankar Mitra
Maintainer: Dr. Ranjit Kumar Paul <ranjitstat@gmail.com>
Description: Forecasting of long memory time series in presence of structural break by using TSF algorithm by Papailias and Dias (2015) <doi:10.1016/j.ijforecast.2015.01.006>.
License: GPL
Imports: stats, fracdiff, forecast
LazyData: TRUE
NeedsCompilation: no
Packaged: 2017-07-15 06:50:30 UTC; ranjitstat
Repository: CRAN
Date/Publication: 2017-07-15 06:49:07 UTC

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Package spongecake updated to version 0.1.2 with previous version 0.1.1 dated 2016-11-25

Title: Transform a Movie into a Synthetic Picture
Description: Transform a Movie into a Synthetic Picture. A frame every 10 seconds is summarized into one colour, then every generated colors are stacked together.
Author: Vincent Guyader
Maintainer: Vincent Guyader <vincent@thinkr.fr>

Diff between spongecake versions 0.1.1 dated 2016-11-25 and 0.1.2 dated 2017-07-15

 DESCRIPTION                 |   12 +++++-----
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 NAMESPACE                   |   32 ++++++++++++---------------
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 11 files changed, 164 insertions(+), 156 deletions(-)

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New package seplyr with initial version 0.1.0
Package: seplyr
Type: Package
Title: Standard Evaluation Interfaces for Common 'dplyr' Tasks
Version: 0.1.0
Author: John Mount
Maintainer: John Mount <jmount@win-vector.com>
Description: The 'seplyr' (standard evaluation data.frame 'dplyr') package supplies standard evaluation adapter methods for important common 'dplyr' methods that currently have a non-standard programming interface. This allows the analyst to use 'dplyr' to perform fundamental data transformation steps such as arranging rows, grouping rows, aggregating selecting columns without having to use learn the details of 'rlang'/'tidyeval' non-standard evaluation and without continuing to rely on now deprecated 'dplyr' "underscore verbs." In addition the 'seplyr' package supplies several new "key operations bound together" methods. These include 'group_summarize()' (which combines grouping, arranging and calculation in an atomic unit), 'add_group_summaries()' (which joins grouped summaries into a 'data.frame' in a well documented manner), and 'add_group_indices()' (which adds per-group identifies to a 'data.frame' without depending on row-order).
License: GPL-3
Encoding: UTF-8
Depends: dplyr (>= 0.7.1)
Imports: rlang (>= 0.1.1), datasets
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
ByteCompile: true
NeedsCompilation: no
Packaged: 2017-07-14 22:26:14 UTC; johnmount
Repository: CRAN
Date/Publication: 2017-07-15 06:31:15 UTC

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Package Rsymphony updated to version 0.1-27 with previous version 0.1-26 dated 2017-02-20

Title: SYMPHONY in R
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut], Kurt Hornik [aut, cre], Stefan Theussl [aut], Cyrille Szymanski [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>

Diff between Rsymphony versions 0.1-26 dated 2017-02-20 and 0.1-27 dated 2017-07-15

 DESCRIPTION            |    6 +++---
 MD5                    |    6 +++---
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 man/Rsymphony_solve.Rd |    4 ++--
 4 files changed, 11 insertions(+), 11 deletions(-)

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New package rsMove with initial version 0.1
Package: rsMove
Type: Package
Title: Remote Sensing for Movement Ecology
Version: 0.1
Date: 2017-07-14
Authors@R: person("Ruben", "Remelgado", role = c("aut", "cre"), email="ruben.remelgado@uni-wuerzburg.de")
URL: https://github.com/RRemelgado/rsMove/tree/master/
BugReports: https://github.com/RRemelgado/rsMove/issues/
Maintainer: Ruben Remelgado <ruben.remelgado@uni-wuerzburg.de>
Description: Tools to analyze animal tracking data with remote sensing.
LazyData: TRUE
Imports: raster, sp, caret, grDevices, rgdal
RoxygenNote: 6.0.1
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2017-07-14 22:43:14 UTC; rus14jh
Author: Ruben Remelgado [aut, cre]
Repository: CRAN
Date/Publication: 2017-07-15 06:30:30 UTC

More information about rsMove at CRAN
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Package httk updated to version 1.7 with previous version 1.6 dated 2017-06-08

Title: High-Throughput Toxicokinetics
Description: Functions and data tables for simulation and statistical analysis of chemical toxicokinetics ("TK") using data obtained from relatively high throughput, in vitro studies. Both physiologically-based ("PBTK") and empirical (e.g., one compartment) "TK" models can be parameterized for several hundred chemicals and multiple species. These models are solved efficiently, often using compiled (C-based) code. A Monte Carlo sampler is included for simulating biological variability and measurement limitations. Functions are also provided for exporting "PBTK" models to "SBML" and "JARNAC" for use with other simulation software. These functions and data provide a set of tools for in vitro-in vivo extrapolation ("IVIVE") of high throughput screening data (e.g., ToxCast) to real-world exposures via reverse dosimetry (also known as "RTK").
Author: John Wambaugh, Robert Pearce, Caroline Ring, Jimena Davis, Nisha Sipes, and R. Woodrow Setzer
Maintainer: John Wambaugh <wambaugh.john@epa.gov>

Diff between httk versions 1.6 dated 2017-06-08 and 1.7 dated 2017-07-15

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 httk-1.7/httk/MD5                                                           |  135 ++++------
 httk-1.7/httk/NAMESPACE                                                     |    2 
 httk-1.7/httk/NEWS                                                          |binary
 httk-1.7/httk/R/Predict_partitioning_Schmitt.R                              |    2 
 httk-1.7/httk/R/calc_mc_css.R                                               |   10 
 httk-1.7/httk/R/convert_httk.R                                              |   26 +
 httk-1.7/httk/build/partial.rdb                                             |binary
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 httk-1.7/httk/inst/doc/supplemental_vignette_plot_css95.html                |    8 
 httk-1.7/httk/inst/doc/supplemental_vignette_serumcreat_splines_kde.html    |    8 
 httk-1.7/httk/inst/doc/vignette01_subpopulations.html                       |    8 
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 httk-1.7/httk/inst/doc/vignette05b_plothowgatejohnson.html                  |    8 
 httk-1.7/httk/inst/doc/vignette06_aerplotting.html                          |    9 
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 httk-1.7/httk/man/age_draw_smooth.Rd                                        |    1 
 httk-1.7/httk/man/blood_mass_correct.Rd                                     |    2 
 httk-1.7/httk/man/blood_weight.Rd                                           |    2 
 httk-1.7/httk/man/bmiage.Rd                                                 |    2 
 httk-1.7/httk/man/body_surface_area.Rd                                      |    2 
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 httk-1.7/httk/man/brain_mass.Rd                                             |    2 
 httk-1.7/httk/man/ckd_epi_eq.Rd                                             |    2 
 httk-1.7/httk/man/convert_httk.Rd                                           |    2 
 httk-1.7/httk/man/estimate_gfr.Rd                                           |    2 
 httk-1.7/httk/man/estimate_gfr_ped.Rd                                       |    2 
 httk-1.7/httk/man/estimate_hematocrit.Rd                                    |    2 
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 httk-1.7/httk/man/get_gfr_category.Rd                                       |    2 
 httk-1.7/httk/man/get_httk_params.Rd                                        |    2 
 httk-1.7/httk/man/get_weight_class.Rd                                       |    2 
 httk-1.7/httk/man/hematocrit_infants.Rd                                     |    2 
 httk-1.7/httk/man/httkpop_bio.Rd                                            |    2 
 httk-1.7/httk/man/httkpop_direct_resample.Rd                                |    2 
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 httk-1.7/httk/man/httkpop_generate.Rd                                       |    2 
 httk-1.7/httk/man/httkpop_virtual_indiv.Rd                                  |    2 
 httk-1.7/httk/man/in_list.Rd                                                |    2 
 httk-1.7/httk/man/kidney_mass_children.Rd                                   |    2 
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 httk-1.7/httk/man/skin_mass_bosgra.Rd                                       |    2 
 httk-1.7/httk/man/spleen_mass_children.Rd                                   |    2 
 httk-1.7/httk/man/spline_heightweight.Rd                                    |    2 
 httk-1.7/httk/man/spline_hematocrit.Rd                                      |    2 
 httk-1.7/httk/man/spline_serumcreat.Rd                                      |    2 
 httk-1.7/httk/man/tissue_masses_flows.Rd                                    |    2 
 httk-1.7/httk/man/tissue_scale.Rd                                           |    2 
 httk-1.7/httk/tests/other_tests.Rout.save                                   |    6 
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Package docker updated to version 0.0.2 with previous version 0.0.1 dated 2017-07-13

Title: Wraps Docker Python SDK
Description: Allows accessing 'Docker' 'SDK' from 'R' via the 'Docker' 'Python' 'SDK' using the 'reticulate' package. This is a very thin wrapper that tries to do very little and get out of the way. The user is expected to know how to use the 'reticulate' package to access 'Python' modules, and how the 'Docker' 'Python' 'SDK' works.
Author: Bhaskar Karambelkar [aut, cre]
Maintainer: Bhaskar Karambelkar <bhaskarvk@gmail.com>

Diff between docker versions 0.0.1 dated 2017-07-13 and 0.0.2 dated 2017-07-15

 DESCRIPTION                               |    9 ++++----
 MD5                                       |   15 +++++++-------
 NEWS.md                                   |only
 inst/doc/Getting_Started_with_Docker.R    |    8 +++----
 inst/doc/Getting_Started_with_Docker.Rmd  |   15 ++++++++------
 inst/doc/Getting_Started_with_Docker.html |   20 +++++++++----------
 tests/testthat.R                          |    5 ++--
 tests/testthat/testHelloWorld.R           |   31 ++++++++++++++++++------------
 vignettes/Getting_Started_with_Docker.Rmd |   15 ++++++++------
 9 files changed, 67 insertions(+), 51 deletions(-)

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