Title: A Fast and Versatile SVM Package
Description: Support vector machines (SVMs) and related kernel-based learning
algorithms are a well-known class of machine learning algorithms, for
non-parametric classification and regression.
liquidSVM is an implementation of SVMs whose key features are:
fully integrated hyper-parameter selection,
extreme speed on both small and large data sets,
full flexibility for experts, and
inclusion of a variety of different learning scenarios:
multi-class classification, ROC, and Neyman-Pearson learning, and
least-squares, quantile, and expectile regression.
Author: Ingo Steinwart, Philipp Thomann
Maintainer: Philipp Thomann <philipp.thomann@mathematik.uni-stuttgart.de>
Diff between liquidSVM versions 1.0.1 dated 2017-03-02 and 1.2.0 dated 2017-07-15
liquidSVM-1.0.1/liquidSVM/vignettes/md/command-args-svm-select.md |only liquidSVM-1.0.1/liquidSVM/vignettes/md/command-args-svm-test.md |only liquidSVM-1.0.1/liquidSVM/vignettes/md/command-args-svm-train.md |only liquidSVM-1.2.0/liquidSVM/DESCRIPTION | 30 liquidSVM-1.2.0/liquidSVM/MD5 | 287 ++++---- liquidSVM-1.2.0/liquidSVM/NAMESPACE | 1 liquidSVM-1.2.0/liquidSVM/R/kernel.R | 5 liquidSVM-1.2.0/liquidSVM/R/liquidData.R | 6 liquidSVM-1.2.0/liquidSVM/R/liquidSVM.R | 118 ++- liquidSVM-1.2.0/liquidSVM/R/mlr.R | 88 +- liquidSVM-1.2.0/liquidSVM/R/model.R | 15 liquidSVM-1.2.0/liquidSVM/R/scenarios.R | 20 liquidSVM-1.2.0/liquidSVM/README.md | 2 liquidSVM-1.2.0/liquidSVM/build/vignette.rds |binary liquidSVM-1.2.0/liquidSVM/configure | 21 liquidSVM-1.2.0/liquidSVM/inst/CITATION | 2 liquidSVM-1.2.0/liquidSVM/inst/doc/demo.R | 38 + liquidSVM-1.2.0/liquidSVM/inst/doc/demo.Rmd | 37 + liquidSVM-1.2.0/liquidSVM/inst/doc/demo.html | 275 ++++---- liquidSVM-1.2.0/liquidSVM/inst/doc/demo_cache |only liquidSVM-1.2.0/liquidSVM/inst/doc/documentation.html | 251 +++---- liquidSVM-1.2.0/liquidSVM/inst/doc/md/global-and-grid.md | 9 liquidSVM-1.2.0/liquidSVM/man/Configuration.Rd | 7 liquidSVM-1.2.0/liquidSVM/man/banana.Rd | 5 liquidSVM-1.2.0/liquidSVM/man/bsSVM.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/clean.liquidSVM.Rd | 3 liquidSVM-1.2.0/liquidSVM/man/command-args.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/compilationInfo.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/errors.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/exSVM.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/getCover.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/getSolution.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/init.liquidSVM.Rd | 14 liquidSVM-1.2.0/liquidSVM/man/kern.Rd | 4 liquidSVM-1.2.0/liquidSVM/man/liquidData.Rd | 4 liquidSVM-1.2.0/liquidSVM/man/liquidSVM-class.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/liquidSVM-package.Rd | 26 liquidSVM-1.2.0/liquidSVM/man/lsSVM.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/mcSVM.Rd | 14 liquidSVM-1.2.0/liquidSVM/man/mlr-liquidSVM.Rd | 17 liquidSVM-1.2.0/liquidSVM/man/nplSVM.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/plotROC.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/predict.liquidSVM.Rd | 12 liquidSVM-1.2.0/liquidSVM/man/print.liquidSVM.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/qtSVM.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/read.liquidSVM.Rd | 3 liquidSVM-1.2.0/liquidSVM/man/reg-1d.Rd | 3 liquidSVM-1.2.0/liquidSVM/man/rocSVM.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/selectSVMs.Rd | 8 liquidSVM-1.2.0/liquidSVM/man/setDisplay.Rd | 1 liquidSVM-1.2.0/liquidSVM/man/svm.Rd | 12 liquidSVM-1.2.0/liquidSVM/man/test.liquidSVM.Rd | 14 liquidSVM-1.2.0/liquidSVM/man/trainSVMs.Rd | 159 ++-- liquidSVM-1.2.0/liquidSVM/man/write.liquidData.Rd | 1 liquidSVM-1.2.0/liquidSVM/src/Makevars.in | 2 liquidSVM-1.2.0/liquidSVM/src/liquidSVM.cpp | 70 +- liquidSVM-1.2.0/liquidSVM/src/liquidSVM.h | 4 liquidSVM-1.2.0/liquidSVM/src/liquidSVM_R.cpp | 36 - liquidSVM-1.2.0/liquidSVM/src/scenario_config.cpp | 17 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_functions/basic_file_functions.cpp | 74 +- liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_functions/basic_file_functions.h | 14 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_functions/flush_print.cpp | 9 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/cache_lru.h | 14 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/dataset.cpp | 117 ++- liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/dataset.h | 11 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/dataset.ins.cpp | 7 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/dataset_info.cpp | 82 +- liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/dataset_info.h | 2 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/my_unordered_map_and_set.h |only liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/sample.cpp | 320 ++++++---- liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/sample.h | 23 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/sample.ins.cpp | 1 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/sample_file_format.cpp |only liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/sample_file_format.h |only liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/vector.h | 3 liquidSVM-1.2.0/liquidSVM/src/sources/shared/basic_types/vector.ins.cpp | 20 liquidSVM-1.2.0/liquidSVM/src/sources/shared/command_line/command_line_parser.cpp | 87 +- liquidSVM-1.2.0/liquidSVM/src/sources/shared/command_line/command_line_parser.h | 10 liquidSVM-1.2.0/liquidSVM/src/sources/shared/kernel/kernel.cpp | 33 - 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liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/thread_manager.cpp | 19 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/thread_manager.h | 4 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/thread_manager.ins.cpp | 13 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/thread_manager_active.cpp | 4 liquidSVM-1.2.0/liquidSVM/src/sources/shared/system_support/timing.ins.cpp | 56 + liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/cv_manager.ins.cpp | 10 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/fold_control.h | 2 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/fold_manager.cpp | 33 + liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/fold_manager.h | 1 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/grid.ins.cpp | 35 - liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/grid_control.cpp | 4 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/grid_control.h | 2 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/train_val_info.cpp | 22 liquidSVM-1.2.0/liquidSVM/src/sources/shared/training_validation/train_val_info.h | 4 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_select.cpp | 6 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_select.h | 2 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_test.cpp | 10 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_test.h | 4 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_train.cpp | 13 liquidSVM-1.2.0/liquidSVM/src/sources/svm/command_line/command_line_parser_svm_train.h | 2 liquidSVM-1.2.0/liquidSVM/src/sources/svm/main/svm-select.cpp | 2 liquidSVM-1.2.0/liquidSVM/src/sources/svm/main/svm-test.cpp | 8 liquidSVM-1.2.0/liquidSVM/src/sources/svm/main/svm-train.cpp | 2 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/basic_svm.cpp | 22 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/expectile_svm.cpp | 21 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/generic_2D_svm.ins.cpp | 11 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/hinge_svm.cpp | 57 + liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/least_squares_svm.cpp | 18 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/quantile_svm.cpp | 19 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/svm_solver_control.h | 10 liquidSVM-1.2.0/liquidSVM/src/sources/svm/solver/template_svm.cpp | 21 liquidSVM-1.2.0/liquidSVM/src/sources/svm/training_validation/svm_cv_manager.ins.cpp | 7 liquidSVM-1.2.0/liquidSVM/src/sources/svm/training_validation/svm_manager.cpp | 41 + liquidSVM-1.2.0/liquidSVM/src/sources/svm/training_validation/svm_manager.h | 6 liquidSVM-1.2.0/liquidSVM/src/sources/tools/change-labels.cpp | 52 - liquidSVM-1.2.0/liquidSVM/src/sources/tools/convert-data.cpp | 79 -- liquidSVM-1.2.0/liquidSVM/src/sources/tools/create-tt.cpp | 46 - liquidSVM-1.2.0/liquidSVM/src/sources/tools/data-stats.cpp | 23 liquidSVM-1.2.0/liquidSVM/src/sources/tools/liquid-info.cpp |only liquidSVM-1.2.0/liquidSVM/src/sources/tools/scale-data.cpp | 19 liquidSVM-1.2.0/liquidSVM/tests/testthat.R | 2 liquidSVM-1.2.0/liquidSVM/tests/testthat/test-bugs.R | 4 liquidSVM-1.2.0/liquidSVM/tests/testthat/test-kernel.R |only liquidSVM-1.2.0/liquidSVM/tests/testthat/test-liquidData.R |only liquidSVM-1.2.0/liquidSVM/tests/testthat/test-mlr.R |only liquidSVM-1.2.0/liquidSVM/tests/testthat/test-model.R | 108 +++ liquidSVM-1.2.0/liquidSVM/tests/testthat/test-quick.R | 91 ++ liquidSVM-1.2.0/liquidSVM/tests/testthat/test-scenarios.R | 176 ++++- liquidSVM-1.2.0/liquidSVM/vignettes/demo.Rmd | 37 + liquidSVM-1.2.0/liquidSVM/vignettes/demo_cache/banana-bc-roc-ls.fsol |only liquidSVM-1.2.0/liquidSVM/vignettes/demo_cache/banana-mc.fsol |only liquidSVM-1.2.0/liquidSVM/vignettes/demo_cache/reg.fsol |only liquidSVM-1.2.0/liquidSVM/vignettes/md/global-and-grid.md | 9 149 files changed, 2533 insertions(+), 1437 deletions(-)
Title: Identifiability of Linear Structural Equation Models
Description: Provides routines to check identifiability or non-identifiability
of linear structural equation models as described in Drton, Foygel, and
Sullivant (2011) <DOI:10.1214/10-AOS859>, Foygel, Draisma, and Drton (2012)
<DOI:10.1214/12-AOS1012>, and other works. The routines are based on the graphical
representation of structural equation models by a path diagram/mixed graph.
Author: Rina Foygel Barber [aut],
Mathias Drton [aut],
Luca Weihs [cre]
Maintainer: Luca Weihs <lucaw@uw.edu>
Diff between SEMID versions 0.2 dated 2015-12-18 and 0.3.0 dated 2017-07-15
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Title: Retinal Reconstruction Program
Description: Reconstructs retinae by morphing a flat surface with cuts (a
dissected flat-mount retina) onto a curvilinear surface (the standard retinal
shape). It can estimate the position of a point on the intact adult retina
to within 8 degrees of arc (3.6% of nasotemporal axis). The coordinates in
reconstructed retinae can be transformed to visuotopic coordinates.
Author: David C. Sterratt [aut, cre, cph],
Daniel Lyngholm [aut, cph]
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>
Diff between retistruct versions 0.5.10 dated 2015-02-16 and 0.5.11 dated 2017-07-15
retistruct-0.5.10/retistruct/R/revision.R |only retistruct-0.5.10/retistruct/man/retistruct.global.revision.Rd |only retistruct-0.5.10/retistruct/tests/reconstruct.R |only retistruct-0.5.11/retistruct/DESCRIPTION | 29 retistruct-0.5.11/retistruct/MD5 | 368 ++++---- retistruct-0.5.11/retistruct/NAMESPACE | 30 retistruct-0.5.11/retistruct/NEWS | 51 + retistruct-0.5.11/retistruct/R/AnnotatedOutline.R | 4 retistruct-0.5.11/retistruct/R/Dataset.R | 7 retistruct-0.5.11/retistruct/R/Outline.R | 2 retistruct-0.5.11/retistruct/R/ReconstructedDataset.R | 18 retistruct-0.5.11/retistruct/R/ReconstructedOutline.R | 18 retistruct-0.5.11/retistruct/R/RetinalReconstructedDataset.R | 2 retistruct-0.5.11/retistruct/R/StitchedOutline.R | 14 retistruct-0.5.11/retistruct/R/TriangulatedOutline.R | 54 + retistruct-0.5.11/retistruct/R/format-common.R | 60 + retistruct-0.5.11/retistruct/R/format-csv.R | 20 retistruct-0.5.11/retistruct/R/format-idt.R | 2 retistruct-0.5.11/retistruct/R/generics.R | 8 retistruct-0.5.11/retistruct/R/geometry.R | 14 retistruct-0.5.11/retistruct/R/kernel-density.R | 24 retistruct-0.5.11/retistruct/R/misc.R | 17 retistruct-0.5.11/retistruct/R/plots.R | 5 retistruct-0.5.11/retistruct/R/projections.R | 10 retistruct-0.5.11/retistruct/R/retistruct-batch.R | 10 retistruct-0.5.11/retistruct/R/retistruct-cli.R | 11 retistruct-0.5.11/retistruct/R/retistruct-gui.R | 442 +++++----- retistruct-0.5.11/retistruct/R/retistruct.R | 28 retistruct-0.5.11/retistruct/R/spheristruct.R | 51 - retistruct-0.5.11/retistruct/R/transformations.R | 4 retistruct-0.5.11/retistruct/man/AnnotatedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/Dataset.Rd | 4 retistruct-0.5.11/retistruct/man/E.Rd | 4 retistruct-0.5.11/retistruct/man/Ecart.Rd | 4 retistruct-0.5.11/retistruct/man/Fcart.Rd | 4 retistruct-0.5.11/retistruct/man/Outline.Rd | 4 retistruct-0.5.11/retistruct/man/Rcart.Rd | 4 retistruct-0.5.11/retistruct/man/ReconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/ReconstructedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/RetinalDataset.Rd | 6 retistruct-0.5.11/retistruct/man/RetinalReconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/RetinalReconstructedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/StitchedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/TriangulatedOutline.Rd | 9 retistruct-0.5.11/retistruct/man/addClass.Rd | 4 retistruct-0.5.11/retistruct/man/addTear.Rd | 4 retistruct-0.5.11/retistruct/man/azel.to.sphere.colattitude.Rd | 4 retistruct-0.5.11/retistruct/man/azimuthal.conformal.Rd | 10 retistruct-0.5.11/retistruct/man/azimuthal.equalarea.Rd | 10 retistruct-0.5.11/retistruct/man/azimuthal.equidistant.Rd | 10 retistruct-0.5.11/retistruct/man/bary.to.sphere.cart.Rd | 4 retistruct-0.5.11/retistruct/man/central.angle.Rd | 4 retistruct-0.5.11/retistruct/man/checkDatadir.Rd | 4 retistruct-0.5.11/retistruct/man/checkTears.Rd | 4 retistruct-0.5.11/retistruct/man/circle.Rd | 4 retistruct-0.5.11/retistruct/man/compute.intersections.sphere.Rd | 4 retistruct-0.5.11/retistruct/man/compute.kernel.estimate.Rd | 4 retistruct-0.5.11/retistruct/man/computeTearRelationships.Rd | 4 retistruct-0.5.11/retistruct/man/create.polar.cart.grid.Rd | 4 retistruct-0.5.11/retistruct/man/csv.read.dataset.Rd | 10 retistruct-0.5.11/retistruct/man/dE.Rd | 4 retistruct-0.5.11/retistruct/man/ensureFixedPointInRim.Rd | 4 retistruct-0.5.11/retistruct/man/f.Rd | 6 retistruct-0.5.11/retistruct/man/fire.Rd | 10 retistruct-0.5.11/retistruct/man/flatplot.Rd | 4 retistruct-0.5.11/retistruct/man/flatplot.annotatedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/flatplot.dataset.Rd | 4 retistruct-0.5.11/retistruct/man/flatplot.outline.Rd | 4 retistruct-0.5.11/retistruct/man/flatplot.reconstructedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/flatplot.retinalDataset.Rd | 4 retistruct-0.5.11/retistruct/man/flatplot.stitchedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/flatplot.triangulatedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/flipped.triangles.Rd | 4 retistruct-0.5.11/retistruct/man/flipped.triangles.cart.Rd | 4 retistruct-0.5.11/retistruct/man/fp.Rd | 4 retistruct-0.5.11/retistruct/man/getDss.Rd | 4 retistruct-0.5.11/retistruct/man/getDss.reconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/getDss.retinalReconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/getDssHullarea.Rd | 4 retistruct-0.5.11/retistruct/man/getDssMean.Rd | 4 retistruct-0.5.11/retistruct/man/getDssMean.reconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/getDssMean.retinalReconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/getFlatRimLength.Rd | 4 retistruct-0.5.11/retistruct/man/getGss.Rd | 4 retistruct-0.5.11/retistruct/man/getGss.reconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/getGss.retinalReconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/getIDs.Rd | 4 retistruct-0.5.11/retistruct/man/getIDs.dataset.Rd | 4 retistruct-0.5.11/retistruct/man/getIDs.reconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/getIms.Rd | 4 retistruct-0.5.11/retistruct/man/getIms.reconstructedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/getKDE.Rd | 4 retistruct-0.5.11/retistruct/man/getKR.Rd | 4 retistruct-0.5.11/retistruct/man/getSss.Rd | 4 retistruct-0.5.11/retistruct/man/getSss.reconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/getSss.retinalReconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/getSssMean.Rd | 4 retistruct-0.5.11/retistruct/man/getStrains.Rd | 6 retistruct-0.5.11/retistruct/man/getTear.Rd | 4 retistruct-0.5.11/retistruct/man/getTss.Rd | 4 retistruct-0.5.11/retistruct/man/identity.transform.Rd | 4 retistruct-0.5.11/retistruct/man/idt.read.dataset.Rd | 4 retistruct-0.5.11/retistruct/man/ijroi.read.dataset.Rd | 4 retistruct-0.5.11/retistruct/man/invert.sphere.Rd | 4 retistruct-0.5.11/retistruct/man/invert.sphere.to.hemisphere.Rd | 4 retistruct-0.5.11/retistruct/man/karcher.mean.sphere.Rd | 10 retistruct-0.5.11/retistruct/man/kde.L.Rd | 4 retistruct-0.5.11/retistruct/man/kde.compute.concentration.Rd | 4 retistruct-0.5.11/retistruct/man/kde.fhat.Rd | 4 retistruct-0.5.11/retistruct/man/kde.fhat.cart.Rd | 4 retistruct-0.5.11/retistruct/man/kr.compute.concentration.Rd | 4 retistruct-0.5.11/retistruct/man/kr.sscv.Rd | 4 retistruct-0.5.11/retistruct/man/kr.yhat.Rd | 4 retistruct-0.5.11/retistruct/man/kr.yhat.cart.Rd | 4 retistruct-0.5.11/retistruct/man/labelTearPoints.Rd | 4 retistruct-0.5.11/retistruct/man/line.line.intersection.Rd | 4 retistruct-0.5.11/retistruct/man/list.datasets.Rd | 4 retistruct-0.5.11/retistruct/man/lvsLplot.Rd | 4 retistruct-0.5.11/retistruct/man/mergePointsEdges.Rd | 4 retistruct-0.5.11/retistruct/man/name.list.Rd | 4 retistruct-0.5.11/retistruct/man/nameLandmark.Rd | 4 retistruct-0.5.11/retistruct/man/nameLandmark.retinalDataset.Rd | 4 retistruct-0.5.11/retistruct/man/normalise.angle.Rd | 4 retistruct-0.5.11/retistruct/man/optimiseMapping.Rd | 4 retistruct-0.5.11/retistruct/man/orthographic.Rd | 10 retistruct-0.5.11/retistruct/man/panlabel.Rd | 4 retistruct-0.5.11/retistruct/man/parse.dependencies.Rd |only retistruct-0.5.11/retistruct/man/polar.cart.to.sphere.spherical.Rd | 4 retistruct-0.5.11/retistruct/man/polartext.Rd | 4 retistruct-0.5.11/retistruct/man/projectToSphere.Rd | 4 retistruct-0.5.11/retistruct/man/projection.Rd | 4 retistruct-0.5.11/retistruct/man/projection.reconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/projection.reconstructedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/read.datacounts.Rd |only retistruct-0.5.11/retistruct/man/read.datapoints.Rd | 4 retistruct-0.5.11/retistruct/man/recfile.version.Rd | 7 retistruct-0.5.11/retistruct/man/remove.identical.consecutive.rows.Rd | 6 retistruct-0.5.11/retistruct/man/remove.intersections.Rd | 4 retistruct-0.5.11/retistruct/man/removeTear.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.Rd | 6 retistruct-0.5.11/retistruct/man/retistruct.batch.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.batch.analyse.summaries.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.batch.analyse.summary.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.batch.export.matlab.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.batch.figures.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.batch.get.titrations.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.batch.plot.ods.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.batch.plot.titrations.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.batch.summary.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.check.markup.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.cli.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.cli.figure.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.cli.process.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.export.matlab.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.potential.od.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.read.dataset.Rd | 11 retistruct-0.5.11/retistruct/man/retistruct.read.markup.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.read.recdata.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.reconstruct.Rd | 6 retistruct-0.5.11/retistruct/man/retistruct.save.markup.Rd | 4 retistruct-0.5.11/retistruct/man/retistruct.save.recdata.Rd | 4 retistruct-0.5.11/retistruct/man/rotate.axis.Rd | 4 retistruct-0.5.11/retistruct/man/setFixedPoint.Rd | 4 retistruct-0.5.11/retistruct/man/simplify.outline.Rd | 4 retistruct-0.5.11/retistruct/man/sinusoidal.Rd | 10 retistruct-0.5.11/retistruct/man/solveMappingCart.Rd | 4 retistruct-0.5.11/retistruct/man/sphere.cart.to.sphere.dualwedge.Rd | 4 retistruct-0.5.11/retistruct/man/sphere.cart.to.sphere.spherical.Rd | 4 retistruct-0.5.11/retistruct/man/sphere.cart.to.sphere.wedge.Rd | 4 retistruct-0.5.11/retistruct/man/sphere.spherical.to.polar.cart.Rd | 4 retistruct-0.5.11/retistruct/man/sphere.spherical.to.sphere.cart.Rd | 4 retistruct-0.5.11/retistruct/man/sphere.tri.area.Rd | 6 retistruct-0.5.11/retistruct/man/sphere.wedge.to.sphere.cart.Rd | 4 retistruct-0.5.11/retistruct/man/spherical.to.polar.area.Rd | 4 retistruct-0.5.11/retistruct/man/sphericalplot.Rd | 4 retistruct-0.5.11/retistruct/man/sphericalplot.reconstructedDataset.Rd | 4 retistruct-0.5.11/retistruct/man/sphericalplot.reconstructedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/strain.colours.Rd | 4 retistruct-0.5.11/retistruct/man/stretchMesh.Rd | 4 retistruct-0.5.11/retistruct/man/titrate.reconstructedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/transform.image.reconstructedOutline.Rd | 4 retistruct-0.5.11/retistruct/man/tri.area.Rd | 4 retistruct-0.5.11/retistruct/man/tri.area.signed.Rd | 4 retistruct-0.5.11/retistruct/man/vecnorm.Rd | 4 retistruct-0.5.11/retistruct/man/whichTear.Rd | 4 retistruct-0.5.11/retistruct/src/retistruct_init.c |only retistruct-0.5.11/retistruct/tests/ijroi-format.Rout.save | 6 retistruct-0.5.11/retistruct/tests/testthat/test-format-idt.R |only retistruct-0.5.11/retistruct/tests/testthat/test-reconstruct.R |only 189 files changed, 1109 insertions(+), 889 deletions(-)
Title: Tools for Working with JavaScript in R
Description: A set of utilities for working with JavaScript syntax in R.
Includes tools to parse, tokenize, compile, validate, reformat, optimize
and analyze JavaScript code.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between js versions 0.2 dated 2015-02-24 and 1.0 dated 2017-07-15
DESCRIPTION | 20 +- MD5 | 33 +-- NAMESPACE | 4 NEWS | 3 R/esprima.R |only build/vignette.rds |binary inst/doc/intro.R | 8 inst/doc/intro.Rmd | 36 ++- inst/doc/intro.html | 432 +++++++++++++++++++++++++++++++++++++--------- inst/js/esprima.min.js |only inst/js/zzz.js | 12 - man/coffee_compile.Rd | 5 man/esprima.Rd |only man/js_eval.Rd | 3 man/js_typeof.Rd | 3 man/js_validate_script.Rd | 3 man/jshint.Rd | 3 man/uglify.Rd | 5 vignettes/intro.Rmd | 36 ++- 19 files changed, 458 insertions(+), 148 deletions(-)
Title: Intervention in Prediction Measure (IPM) for Random Forests
Description: Computes IPM for assessing variable importance for random forests. See details at I. Epifanio (2017) <DOI:10.1186/s12859-017-1650-8>.
Author: Irene Epifanio, Stefano Nembrini
Maintainer: Irene Epifanio <epifanio@uji.es>
Diff between IPMRF versions 1.0 dated 2017-05-05 and 1.1 dated 2017-07-15
DESCRIPTION | 12 ++++++------ MD5 | 23 +++++++++++++++-------- NEWS |only R/getTreeranger.R |only R/ipmranger.R |only R/ipmrangernew.R |only R/prevtree.R | 2 +- man/IPMRF-internal-ranger.Rd |only man/IPMRF-internal.Rd | 1 + man/IPMRF-package.Rd | 12 +++++++----- man/ipmparty.Rd | 2 +- man/ipmpartynew.Rd | 2 +- man/ipmranger.Rd |only man/ipmrangernew.Rd |only man/ipmrf.Rd | 7 +++---- man/ipmrfnew.Rd | 5 ++--- 16 files changed, 37 insertions(+), 29 deletions(-)
Title: Implementation of Core Data Structures
Description: Implementation of advanced data structures such as hashmaps,
heaps, or queues. Advanced data structures are essential
in many computer science and statistics problems, for example graph
algorithms or string analysis. The package uses 'Boost' and 'STL' data
types and extends these to R with 'Rcpp' modules.
Author: Simon Dirmeier [aut, cre]
Maintainer: Simon Dirmeier <simon.dirmeier@gmx.de>
Diff between datastructures versions 0.1.0 dated 2017-07-09 and 0.2.0 dated 2017-07-15
datastructures-0.1.0/datastructures/R/ds_fibonacci_heap.R |only datastructures-0.1.0/datastructures/R/ds_hashmap.R |only datastructures-0.1.0/datastructures/R/ds_queue.R |only datastructures-0.1.0/datastructures/R/ds_stack.R |only datastructures-0.1.0/datastructures/inst/NEWS |only datastructures-0.1.0/datastructures/tests/testthat/tests_fibonacci.R |only datastructures-0.1.0/datastructures/tests/testthat/tests_hashmap.R |only datastructures-0.1.0/datastructures/tests/testthat/tests_queue.R |only datastructures-0.1.0/datastructures/tests/testthat/tests_stack.R |only datastructures-0.2.0/datastructures/DESCRIPTION | 21 - datastructures-0.2.0/datastructures/MD5 | 120 +++-- datastructures-0.2.0/datastructures/NAMESPACE | 12 datastructures-0.2.0/datastructures/R/checks.R | 10 datastructures-0.2.0/datastructures/R/datastructures-package.R | 10 datastructures-0.2.0/datastructures/R/ds_deque.R |only datastructures-0.2.0/datastructures/R/ds_deque_queue.R |only datastructures-0.2.0/datastructures/R/ds_deque_stack.R |only datastructures-0.2.0/datastructures/R/ds_heap.R |only datastructures-0.2.0/datastructures/R/ds_heap_binomial.R |only datastructures-0.2.0/datastructures/R/ds_heap_fibonacci.R |only datastructures-0.2.0/datastructures/R/ds_map.R |only datastructures-0.2.0/datastructures/R/ds_map_bimap.R |only datastructures-0.2.0/datastructures/R/ds_map_hashmap.R |only datastructures-0.2.0/datastructures/R/methods_get.R | 55 ++ datastructures-0.2.0/datastructures/R/methods_head.R | 30 - datastructures-0.2.0/datastructures/R/methods_insert.R | 129 ++++-- datastructures-0.2.0/datastructures/R/methods_keys.R |only datastructures-0.2.0/datastructures/R/methods_peek.R | 68 +-- datastructures-0.2.0/datastructures/R/methods_pop.R | 65 +-- datastructures-0.2.0/datastructures/R/methods_show.R | 106 ++--- datastructures-0.2.0/datastructures/R/methods_size.R | 77 +-- datastructures-0.2.0/datastructures/R/methods_values.R |only datastructures-0.2.0/datastructures/R/zzz.R | 4 datastructures-0.2.0/datastructures/build/vignette.rds |binary datastructures-0.2.0/datastructures/cleanup |only datastructures-0.2.0/datastructures/inst/NEWS.rd |only datastructures-0.2.0/datastructures/inst/doc/datastructures.R | 36 + datastructures-0.2.0/datastructures/inst/doc/datastructures.Rmd | 93 ++-- datastructures-0.2.0/datastructures/inst/doc/datastructures.html | 203 +++++++--- datastructures-0.2.0/datastructures/inst/include/bimap.hpp |only datastructures-0.2.0/datastructures/inst/include/binomial_heap.hpp |only datastructures-0.2.0/datastructures/inst/include/hashmap.hpp | 18 datastructures-0.2.0/datastructures/man/bimap-class.Rd |only datastructures-0.2.0/datastructures/man/bimap.Rd |only datastructures-0.2.0/datastructures/man/binomial_heap-class.Rd |only datastructures-0.2.0/datastructures/man/binomial_heap.Rd |only datastructures-0.2.0/datastructures/man/datastructures-package.Rd | 10 datastructures-0.2.0/datastructures/man/deque-class.Rd |only datastructures-0.2.0/datastructures/man/fibonacci_heap-class.Rd | 17 datastructures-0.2.0/datastructures/man/fibonacci_heap.Rd |only datastructures-0.2.0/datastructures/man/get-methods.Rd | 27 + datastructures-0.2.0/datastructures/man/hashmap-class.Rd | 17 datastructures-0.2.0/datastructures/man/hashmap.Rd |only datastructures-0.2.0/datastructures/man/head-methods.Rd | 5 datastructures-0.2.0/datastructures/man/heap-class.Rd |only datastructures-0.2.0/datastructures/man/insert-methods.Rd | 12 datastructures-0.2.0/datastructures/man/keys-methods.Rd |only datastructures-0.2.0/datastructures/man/map-class.Rd |only datastructures-0.2.0/datastructures/man/peek-methods.Rd | 11 datastructures-0.2.0/datastructures/man/pop-methods.Rd | 9 datastructures-0.2.0/datastructures/man/queue-class.Rd | 11 datastructures-0.2.0/datastructures/man/queue.Rd |only datastructures-0.2.0/datastructures/man/size-methods.Rd | 8 datastructures-0.2.0/datastructures/man/stack-class.Rd | 11 datastructures-0.2.0/datastructures/man/stack.Rd |only datastructures-0.2.0/datastructures/man/subset-bimap-ANY-missing-method.Rd |only datastructures-0.2.0/datastructures/man/subset-binomial_heap-ANY-missing-method.Rd |only datastructures-0.2.0/datastructures/man/subset-fibonacci_heap-ANY-missing-method.Rd | 2 datastructures-0.2.0/datastructures/man/subset-hashmap-ANY-missing-method.Rd | 2 datastructures-0.2.0/datastructures/man/values-methods.Rd |only datastructures-0.2.0/datastructures/src/bimap_module.cpp |only datastructures-0.2.0/datastructures/src/binomial_heap_module.cpp |only datastructures-0.2.0/datastructures/src/hashmap_module.cpp | 12 datastructures-0.2.0/datastructures/src/init.c | 12 datastructures-0.2.0/datastructures/src/stack_module.cpp | 1 datastructures-0.2.0/datastructures/tests/testthat.R | 2 datastructures-0.2.0/datastructures/tests/testthat/tests_deque.R |only datastructures-0.2.0/datastructures/tests/testthat/tests_deque_queue.R |only datastructures-0.2.0/datastructures/tests/testthat/tests_deque_stack.R |only datastructures-0.2.0/datastructures/tests/testthat/tests_heap.R |only datastructures-0.2.0/datastructures/tests/testthat/tests_heap_binomial.R |only datastructures-0.2.0/datastructures/tests/testthat/tests_heap_fibonacci.R |only datastructures-0.2.0/datastructures/tests/testthat/tests_map.R |only datastructures-0.2.0/datastructures/tests/testthat/tests_map_bimap.R |only datastructures-0.2.0/datastructures/tests/testthat/tests_map_hashmap.R |only datastructures-0.2.0/datastructures/vignettes/datastructures.Rmd | 93 ++-- 86 files changed, 858 insertions(+), 461 deletions(-)
More information about datastructures at CRAN
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More information about randomForestExplainer at CRAN
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Title: Interactive Editing of Spatial Data in R
Description: Suite of interactive functions and helpers for selecting and editing
geospatial data.
Author: Tim Appelhans [aut, cre],
Kenton Russell [aut]
Maintainer: Tim Appelhans <tim.appelhans@gmail.com>
Diff between mapedit versions 0.3.0 dated 2017-06-29 and 0.3.2 dated 2017-07-15
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 18 ++++++++++++++++++ R/edit.R | 5 ++++- R/edit_map_return_sf.R | 31 +++++++++---------------------- R/merge.R | 34 ++++++++++++++++++++++++++++++++-- R/modules.R | 35 ++++++++++++++++++----------------- README.md | 15 +++++++++------ 8 files changed, 102 insertions(+), 60 deletions(-)
Title: Dynamic Hazard Models using State Space Models
Description: Contains functions that lets you fit dynamic hazard models with binary
outcomes using state space models. The methods are originally described in
Fahrmeir (1992) <doi:10.1080/01621459.1992.10475232> and Fahrmeir (1994)
<doi:10.1093/biomet/81.2.317>. The functions also provide an extension hereof where the
Extended Kalman filter is replaced by an Unscented Kalman filter. Models are
fitted with the regular coxph() like formula.
Author: Benjamin Christoffersen [cre, aut],
Alan Miller [cph],
Anthony Williams [cph],
Boost developers [cph],
R-core [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between dynamichazard versions 0.3.4 dated 2017-06-26 and 0.3.5 dated 2017-07-15
dynamichazard-0.3.4/dynamichazard/src/Cdqrls_wrapper.cpp |only dynamichazard-0.3.4/dynamichazard/src/stats |only dynamichazard-0.3.4/dynamichazard/tests/testthat/testIWLS.R |only dynamichazard-0.3.5/dynamichazard/DESCRIPTION | 6 dynamichazard-0.3.5/dynamichazard/MD5 | 81 ++--- dynamichazard-0.3.5/dynamichazard/R/RcppExports.R | 8 dynamichazard-0.3.5/dynamichazard/R/ddhazard.R | 7 dynamichazard-0.3.5/dynamichazard/R/predict.R | 64 ++-- dynamichazard-0.3.5/dynamichazard/inst/doc/Bootstrap_illustration.pdf |binary dynamichazard-0.3.5/dynamichazard/inst/doc/Comparing_methods_for_logistic_models.pdf |binary dynamichazard-0.3.5/dynamichazard/inst/doc/Diagnostics.pdf |binary dynamichazard-0.3.5/dynamichazard/inst/doc/Sim_study_with_logit.pdf |binary dynamichazard-0.3.5/dynamichazard/inst/doc/ddhazard.Rmd | 10 dynamichazard-0.3.5/dynamichazard/inst/doc/ddhazard.pdf |binary dynamichazard-0.3.5/dynamichazard/man/ddhazard.Rd | 3 dynamichazard-0.3.5/dynamichazard/src/Makevars | 8 dynamichazard-0.3.5/dynamichazard/src/Makevars.win | 8 dynamichazard-0.3.5/dynamichazard/src/RcppExports.cpp | 34 -- dynamichazard-0.3.5/dynamichazard/src/arma_n_rcpp.h | 4 dynamichazard-0.3.5/dynamichazard/src/ddhazard.h | 2 dynamichazard-0.3.5/dynamichazard/src/ddhazard_EKF_solver.cpp | 8 dynamichazard-0.3.5/dynamichazard/src/ddhazard_GMA_solver.cpp | 8 dynamichazard-0.3.5/dynamichazard/src/ddhazard_SMA_solver.cpp | 4 dynamichazard-0.3.5/dynamichazard/src/ddhazard_fit.cpp | 115 ------- dynamichazard-0.3.5/dynamichazard/src/estimate_fixed_effects_M_step.h |only dynamichazard-0.3.5/dynamichazard/tests/testthat/helper.R | 77 ++++ dynamichazard-0.3.5/dynamichazard/tests/testthat/previous_results/UKF2.RDS |binary dynamichazard-0.3.5/dynamichazard/tests/testthat/previous_results/UKF4.RDS |binary dynamichazard-0.3.5/dynamichazard/tests/testthat/previous_results/UKF5.RDS |binary dynamichazard-0.3.5/dynamichazard/tests/testthat/previous_results/UKF6.RDS |binary dynamichazard-0.3.5/dynamichazard/tests/testthat/previous_results/ddhazard_exp_bin.RDS |binary dynamichazard-0.3.5/dynamichazard/tests/testthat/previous_results/ddhazard_exp_clip.RDS |binary dynamichazard-0.3.5/dynamichazard/tests/testthat/previous_results/ddhazard_exp_clip_w_jump.RDS |binary dynamichazard-0.3.5/dynamichazard/tests/testthat/testUKF.R | 96 ++---- dynamichazard-0.3.5/dynamichazard/tests/testthat/test_SMA.R | 2 dynamichazard-0.3.5/dynamichazard/tests/testthat/testbigglm_wrapper.R | 28 - dynamichazard-0.3.5/dynamichazard/tests/testthat/testboot_est.R | 2 dynamichazard-0.3.5/dynamichazard/tests/testthat/testddhazard.R | 72 +--- dynamichazard-0.3.5/dynamichazard/tests/testthat/testdesign_mat_and_risk_obj.R | 52 +-- dynamichazard-0.3.5/dynamichazard/tests/testthat/testpredict.R | 3 dynamichazard-0.3.5/dynamichazard/tests/testthat/testresiduals.R | 160 +++++----- dynamichazard-0.3.5/dynamichazard/tests/testthat/testtest_utils.R | 18 - dynamichazard-0.3.5/dynamichazard/vignettes/ddhazard.Rmd | 10 43 files changed, 386 insertions(+), 504 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
'citation("Rcpp")' for details on these last two.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 0.12.11 dated 2017-05-22 and 0.12.12 dated 2017-07-15
ChangeLog | 108 DESCRIPTION | 8 MD5 | 68 R/Attributes.R | 9 R/Rcpp.package.skeleton.R | 10 R/inline.R | 51 README.md | 8 build/Rcpp.pdf |binary build/vignette.rds |binary inst/NEWS.Rd | 42 inst/bib/Rcpp.bib | 2 inst/doc/Rcpp-FAQ.pdf |binary inst/doc/Rcpp-attributes.pdf |binary inst/doc/Rcpp-extending.pdf |binary inst/doc/Rcpp-introduction.pdf |binary inst/doc/Rcpp-modules.pdf |binary inst/doc/Rcpp-package.pdf |binary inst/doc/Rcpp-quickref.pdf |binary inst/doc/Rcpp-sugar.pdf |binary inst/doc/Rcpp-unitTests.pdf |binary inst/include/Rcpp/Dimension.h | 12 inst/include/Rcpp/Module.h | 2 inst/include/Rcpp/config.h | 4 inst/include/Rcpp/exceptions.h | 6 inst/include/Rcpp/internal/wrap.h | 1758 +++++++--------- inst/include/Rcpp/macros/unroll.h | 30 inst/include/Rcpp/module/Module_generated_Constructor.h | 2 inst/include/Rcpp/utils/tinyformat.h | 54 inst/include/Rcpp/vector/Vector.h | 4 inst/include/Rcpp/vector/no_init.h | 4 inst/include/RcppCommon.h | 12 man/Rcpp.package.skeleton.Rd | 4 man/Rcpp.plugin.maker.Rd | 12 src/api.cpp | 4 src/attributes.cpp | 70 35 files changed, 1225 insertions(+), 1059 deletions(-)
Title: Transform a Movie into a Synthetic Picture
Description: Transform a Movie into a Synthetic Picture. A frame every 10 seconds is summarized into one colour, then every generated colors are stacked together.
Author: Vincent Guyader
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between spongecake versions 0.1.1 dated 2016-11-25 and 0.1.2 dated 2017-07-15
DESCRIPTION | 12 +++++----- MD5 | 20 ++++++++--------- NAMESPACE | 32 ++++++++++++--------------- R/functions.R | 36 ++++++++++++++++++------------- R/onAttach.R | 19 +++++++++++----- R/spongecake.R | 3 +- man/average_color.Rd | 31 ++++++++++++-------------- man/draw.Rd | 47 +++++++++++++++++++--------------------- man/folder_average_color.Rd | 31 ++++++++++++-------------- man/gen_screenshot.Rd | 51 +++++++++++++++++++++----------------------- man/spongecake.Rd | 38 ++++++++++++++++---------------- 11 files changed, 164 insertions(+), 156 deletions(-)
Title: SYMPHONY in R
Description: An R interface to the SYMPHONY solver for mixed-integer linear programs.
Author: Reinhard Harter [aut],
Kurt Hornik [aut, cre],
Stefan Theussl [aut],
Cyrille Szymanski [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Rsymphony versions 0.1-26 dated 2017-02-20 and 0.1-27 dated 2017-07-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/symphony.R | 6 +++--- man/Rsymphony_solve.Rd | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: High-Throughput Toxicokinetics
Description: Functions and data tables for simulation and statistical analysis of chemical toxicokinetics ("TK") using data obtained from relatively high throughput, in vitro studies. Both physiologically-based ("PBTK") and empirical (e.g., one compartment) "TK" models can be parameterized for several hundred chemicals and multiple species. These models are solved efficiently, often using compiled (C-based) code. A Monte Carlo sampler is included for simulating biological variability and measurement limitations. Functions are also provided for exporting "PBTK" models to "SBML" and "JARNAC" for use with other simulation software. These functions and data provide a set of tools for in vitro-in vivo extrapolation ("IVIVE") of high throughput screening data (e.g., ToxCast) to real-world exposures via reverse dosimetry (also known as "RTK").
Author: John Wambaugh, Robert Pearce, Caroline Ring, Jimena Davis, Nisha Sipes, and R. Woodrow Setzer
Maintainer: John Wambaugh <wambaugh.john@epa.gov>
Diff between httk versions 1.6 dated 2017-06-08 and 1.7 dated 2017-07-15
httk-1.6/httk/inst/doc/httk.pdf |only httk-1.6/httk/inst/doc/httk.pdf.asis |only httk-1.6/httk/man/httkpop.Rd |only httk-1.6/httk/vignettes/httk.pdf.asis |only httk-1.7/httk/DESCRIPTION | 8 httk-1.7/httk/MD5 | 135 ++++------ httk-1.7/httk/NAMESPACE | 2 httk-1.7/httk/NEWS |binary httk-1.7/httk/R/Predict_partitioning_Schmitt.R | 2 httk-1.7/httk/R/calc_mc_css.R | 10 httk-1.7/httk/R/convert_httk.R | 26 + httk-1.7/httk/build/partial.rdb |binary httk-1.7/httk/build/vignette.rds |binary httk-1.7/httk/data/Tables.RData |binary httk-1.7/httk/data/httkpop.RData |binary httk-1.7/httk/data/vignettes.RData |binary httk-1.7/httk/inst/CITATION |only httk-1.7/httk/inst/doc/partitioning_plots.html | 8 httk-1.7/httk/inst/doc/supplemental_vignette_age_dist.html | 8 httk-1.7/httk/inst/doc/supplemental_vignette_globalsensitivityanalysis.html | 8 httk-1.7/httk/inst/doc/supplemental_vignette_globalsensitivityplot.html | 8 httk-1.7/httk/inst/doc/supplemental_vignette_heightweight_splines_kde.html | 10 httk-1.7/httk/inst/doc/supplemental_vignette_hematocrit_splines.html | 8 httk-1.7/httk/inst/doc/supplemental_vignette_plot_css95.html | 8 httk-1.7/httk/inst/doc/supplemental_vignette_serumcreat_splines_kde.html | 8 httk-1.7/httk/inst/doc/vignette01_subpopulations.html | 8 httk-1.7/httk/inst/doc/vignette02_evalmodelsubpop.html | 9 httk-1.7/httk/inst/doc/vignette03_paper_fig2.html | 9 httk-1.7/httk/inst/doc/vignette04_paper_fig3.html | 8 httk-1.7/httk/inst/doc/vignette05b_plothowgatejohnson.html | 8 httk-1.7/httk/inst/doc/vignette06_aerplotting.html | 9 httk-1.7/httk/inst/doc/vignette_05a_virtualstudypops.html | 8 httk-1.7/httk/man/age_dist_smooth.Rd | 1 httk-1.7/httk/man/age_draw_smooth.Rd | 1 httk-1.7/httk/man/blood_mass_correct.Rd | 2 httk-1.7/httk/man/blood_weight.Rd | 2 httk-1.7/httk/man/bmiage.Rd | 2 httk-1.7/httk/man/body_surface_area.Rd | 2 httk-1.7/httk/man/bone_mass_age.Rd | 2 httk-1.7/httk/man/brain_mass.Rd | 2 httk-1.7/httk/man/ckd_epi_eq.Rd | 2 httk-1.7/httk/man/convert_httk.Rd | 2 httk-1.7/httk/man/estimate_gfr.Rd | 2 httk-1.7/httk/man/estimate_gfr_ped.Rd | 2 httk-1.7/httk/man/estimate_hematocrit.Rd | 2 httk-1.7/httk/man/gen_age_height_weight.Rd | 2 httk-1.7/httk/man/gen_height_weight.Rd | 2 httk-1.7/httk/man/get_gfr_category.Rd | 2 httk-1.7/httk/man/get_httk_params.Rd | 2 httk-1.7/httk/man/get_weight_class.Rd | 2 httk-1.7/httk/man/hematocrit_infants.Rd | 2 httk-1.7/httk/man/httkpop_bio.Rd | 2 httk-1.7/httk/man/httkpop_direct_resample.Rd | 2 httk-1.7/httk/man/httkpop_direct_resample_inner.Rd | 2 httk-1.7/httk/man/httkpop_generate.Rd | 2 httk-1.7/httk/man/httkpop_virtual_indiv.Rd | 2 httk-1.7/httk/man/in_list.Rd | 2 httk-1.7/httk/man/kidney_mass_children.Rd | 2 httk-1.7/httk/man/liver_mass_children.Rd | 1 httk-1.7/httk/man/lung_mass_children.Rd | 2 httk-1.7/httk/man/pancreas_mass_children.Rd | 2 httk-1.7/httk/man/skeletal_muscle_mass.Rd | 2 httk-1.7/httk/man/skeletal_muscle_mass_children.Rd | 2 httk-1.7/httk/man/skin_mass_bosgra.Rd | 2 httk-1.7/httk/man/spleen_mass_children.Rd | 2 httk-1.7/httk/man/spline_heightweight.Rd | 2 httk-1.7/httk/man/spline_hematocrit.Rd | 2 httk-1.7/httk/man/spline_serumcreat.Rd | 2 httk-1.7/httk/man/tissue_masses_flows.Rd | 2 httk-1.7/httk/man/tissue_scale.Rd | 2 httk-1.7/httk/tests/other_tests.Rout.save | 6 71 files changed, 199 insertions(+), 188 deletions(-)
Title: Wraps Docker Python SDK
Description: Allows accessing 'Docker' 'SDK' from 'R' via the 'Docker' 'Python' 'SDK' using the 'reticulate' package.
This is a very thin wrapper that tries to do very little and get out of the way.
The user is expected to know how to use the 'reticulate' package to access 'Python' modules, and how the 'Docker' 'Python' 'SDK' works.
Author: Bhaskar Karambelkar [aut, cre]
Maintainer: Bhaskar Karambelkar <bhaskarvk@gmail.com>
Diff between docker versions 0.0.1 dated 2017-07-13 and 0.0.2 dated 2017-07-15
DESCRIPTION | 9 ++++---- MD5 | 15 +++++++------- NEWS.md |only inst/doc/Getting_Started_with_Docker.R | 8 +++---- inst/doc/Getting_Started_with_Docker.Rmd | 15 ++++++++------ inst/doc/Getting_Started_with_Docker.html | 20 +++++++++---------- tests/testthat.R | 5 ++-- tests/testthat/testHelloWorld.R | 31 ++++++++++++++++++------------ vignettes/Getting_Started_with_Docker.Rmd | 15 ++++++++------ 9 files changed, 67 insertions(+), 51 deletions(-)