Title: Spatial and Spatiotemporal Relative Risk
Description: Provides functions to estimate kernel-smoothed spatial and spatio-temporal densities and relative risk functions, and perform subsequent inference.
Author: T.M. Davies and J.C. Marshall
Maintainer: Tilman M. Davies <tdavies@maths.otago.ac.nz>
Diff between sparr versions 0.3-8 dated 2016-03-10 and 2.1-10 dated 2017-07-17
sparr-0.3-8/sparr/R/AREA_BASIC.R |only sparr-0.3-8/sparr/R/KBivN.R |only sparr-0.3-8/sparr/R/KBivN_OPT.R |only sparr-0.3-8/sparr/R/KBivQ.R |only sparr-0.3-8/sparr/R/KERNEL.R |only sparr-0.3-8/sparr/R/KSPEC.R |only sparr-0.3-8/sparr/R/LSCV.density.single.R |only sparr-0.3-8/sparr/R/Lsq.R |only sparr-0.3-8/sparr/R/areaLsq.R |only sparr-0.3-8/sparr/R/as.im.bivden.R |only sparr-0.3-8/sparr/R/as.im.rrs.R |only sparr-0.3-8/sparr/R/assignColors.R |only sparr-0.3-8/sparr/R/compute.coord.R |only sparr-0.3-8/sparr/R/dupli.data.frame.R |only sparr-0.3-8/sparr/R/getNearest.R |only sparr-0.3-8/sparr/R/getQhz_Adaptive.R |only sparr-0.3-8/sparr/R/getQhz_Fixed.R |only sparr-0.3-8/sparr/R/idQuan.R |only sparr-0.3-8/sparr/R/nearestBC_Vals.R |only sparr-0.3-8/sparr/R/rsmc.R |only sparr-0.3-8/sparr/R/rsmc.asym.R |only sparr-0.3-8/sparr/R/rsmc.fix.R |only sparr-0.3-8/sparr/R/rsmc.sym.R |only sparr-0.3-8/sparr/R/run_ppp.R |only sparr-0.3-8/sparr/R/tol3d.R |only sparr-0.3-8/sparr/R/tol3d.component.R |only sparr-0.3-8/sparr/R/translateCoord.R |only sparr-0.3-8/sparr/data/PBC.rda |only sparr-0.3-8/sparr/man/KBivN.Rd |only sparr-0.3-8/sparr/man/KBivQ.Rd |only sparr-0.3-8/sparr/man/LSCV.density.Rd |only sparr-0.3-8/sparr/man/PBC.Rd |only sparr-0.3-8/sparr/man/as.im.bivden.Rd |only sparr-0.3-8/sparr/man/plot.bivden.Rd |only sparr-0.3-8/sparr/man/summary.bivden.Rd |only sparr-0.3-8/sparr/man/summary.rrs.Rd |only sparr-2.1-10/sparr/DESCRIPTION | 18 sparr-2.1-10/sparr/MD5 | 169 ++-- sparr-2.1-10/sparr/NAMESPACE | 94 +- sparr-2.1-10/sparr/NEWS | 22 sparr-2.1-10/sparr/R/BAM.single.R |only sparr-2.1-10/sparr/R/BAMprep.R |only sparr-2.1-10/sparr/R/BOOT.density.R |only sparr-2.1-10/sparr/R/BOOT.spattemp.R |only sparr-2.1-10/sparr/R/K0.R |only sparr-2.1-10/sparr/R/LIK.density.R |only sparr-2.1-10/sparr/R/LIK.density.spatial.single.R |only sparr-2.1-10/sparr/R/LIK.density.spattemp.single.R |only sparr-2.1-10/sparr/R/LIK.spattemp.R |only sparr-2.1-10/sparr/R/LSCV.density.R | 302 ++++++-- sparr-2.1-10/sparr/R/LSCV.density.spatial.single.R |only sparr-2.1-10/sparr/R/LSCV.density.spattemp.single.R |only sparr-2.1-10/sparr/R/LSCV.risk.R | 542 ++++++++++++-- sparr-2.1-10/sparr/R/LSCV.risk.single.R | 52 - sparr-2.1-10/sparr/R/LSCV.spattemp.R |only sparr-2.1-10/sparr/R/NS.R | 149 +++ sparr-2.1-10/sparr/R/NS.spattemp.R |only sparr-2.1-10/sparr/R/OS.R | 145 ++- sparr-2.1-10/sparr/R/OS.spattemp.R |only sparr-2.1-10/sparr/R/adens.R |only sparr-2.1-10/sparr/R/available.h0.R |only sparr-2.1-10/sparr/R/bivariate.density.R | 755 +++++++++----------- sparr-2.1-10/sparr/R/bivden.LOO.R |only sparr-2.1-10/sparr/R/boot.opt.spatial.adapt.R |only sparr-2.1-10/sparr/R/boot.opt.spatial.fix.R |only sparr-2.1-10/sparr/R/burk-data.R |only sparr-2.1-10/sparr/R/checking.R |only sparr-2.1-10/sparr/R/edgeh.R |only sparr-2.1-10/sparr/R/fft.R |only sparr-2.1-10/sparr/R/fmd-data.R |only sparr-2.1-10/sparr/R/gethcats.R |only sparr-2.1-10/sparr/R/identical_windows.R | 23 sparr-2.1-10/sparr/R/kernel2d.R |only sparr-2.1-10/sparr/R/ms.loo.R |only sparr-2.1-10/sparr/R/multiscale.density.R |only sparr-2.1-10/sparr/R/multiscale.slice.R |only sparr-2.1-10/sparr/R/package.R |only sparr-2.1-10/sparr/R/pbc-data.R |only sparr-2.1-10/sparr/R/plot.bivden.R | 200 +++-- sparr-2.1-10/sparr/R/plot.msden.R |only sparr-2.1-10/sparr/R/plot.rrs.R | 120 +-- sparr-2.1-10/sparr/R/plot.rrst.R |only sparr-2.1-10/sparr/R/plot.stden.R |only sparr-2.1-10/sparr/R/posifybivden.R |only sparr-2.1-10/sparr/R/print.bivden.R | 31 sparr-2.1-10/sparr/R/print.msden.R |only sparr-2.1-10/sparr/R/print.rrs.R | 22 sparr-2.1-10/sparr/R/print.rrst.R |only sparr-2.1-10/sparr/R/print.stden.R |only sparr-2.1-10/sparr/R/processgamma.R |only sparr-2.1-10/sparr/R/processnstar.R |only sparr-2.1-10/sparr/R/processscaler.R |only sparr-2.1-10/sparr/R/risk.R | 441 ++++++++--- sparr-2.1-10/sparr/R/spattemp.LOO.R |only sparr-2.1-10/sparr/R/spattemp.density.R |only sparr-2.1-10/sparr/R/spattemp.risk.R |only sparr-2.1-10/sparr/R/spattemp.slice.R |only sparr-2.1-10/sparr/R/summary.bivden.R | 46 - sparr-2.1-10/sparr/R/summary.msden.R |only sparr-2.1-10/sparr/R/summary.rrs.R | 35 sparr-2.1-10/sparr/R/summary.rrst.R |only sparr-2.1-10/sparr/R/summary.stden.R |only sparr-2.1-10/sparr/R/taperoff.R |only sparr-2.1-10/sparr/R/tol.asy.ada.R |only sparr-2.1-10/sparr/R/tol.asy.fix.R |only sparr-2.1-10/sparr/R/tol.asy.st.R |only sparr-2.1-10/sparr/R/tol.contour.R |only sparr-2.1-10/sparr/R/tol.mc.ada.R |only sparr-2.1-10/sparr/R/tol.mc.fix.R |only sparr-2.1-10/sparr/R/tolerance.R | 509 +++++-------- sparr-2.1-10/sparr/R/zzz.R | 14 sparr-2.1-10/sparr/README.md |only sparr-2.1-10/sparr/data/burk.rda |only sparr-2.1-10/sparr/data/fmd.rda |only sparr-2.1-10/sparr/data/pbc.rda |only sparr-2.1-10/sparr/inst/CITATION | 38 - sparr-2.1-10/sparr/man/BOOT.density.Rd |only sparr-2.1-10/sparr/man/BOOT.spattemp.Rd |only sparr-2.1-10/sparr/man/CV.Rd |only sparr-2.1-10/sparr/man/LSCV.risk.Rd | 288 +++++-- sparr-2.1-10/sparr/man/LSCV.spattemp.Rd |only sparr-2.1-10/sparr/man/NS.Rd | 186 +++- sparr-2.1-10/sparr/man/OS.Rd | 171 ++-- sparr-2.1-10/sparr/man/available.h0.Rd |only sparr-2.1-10/sparr/man/bivariate.density.Rd | 355 +++++---- sparr-2.1-10/sparr/man/burk.Rd |only sparr-2.1-10/sparr/man/fft2d.Rd |only sparr-2.1-10/sparr/man/fmd.Rd |only sparr-2.1-10/sparr/man/multiscale.density.Rd |only sparr-2.1-10/sparr/man/multiscale.slice.Rd |only sparr-2.1-10/sparr/man/pbc.Rd |only sparr-2.1-10/sparr/man/plotsparr.Rd |only sparr-2.1-10/sparr/man/printsparr.Rd |only sparr-2.1-10/sparr/man/risk.Rd | 289 ++++--- sparr-2.1-10/sparr/man/sparr-internal.Rd | 92 +- sparr-2.1-10/sparr/man/sparr-package.Rd | 366 +++++++-- sparr-2.1-10/sparr/man/spattemp.density.Rd |only sparr-2.1-10/sparr/man/spattemp.risk.Rd |only sparr-2.1-10/sparr/man/spattemp.slice.Rd |only sparr-2.1-10/sparr/man/summarysparr.Rd |only sparr-2.1-10/sparr/man/tol.contour.Rd |only sparr-2.1-10/sparr/man/tolerance.Rd | 276 ++++--- 142 files changed, 3701 insertions(+), 2049 deletions(-)
Title: Pedigree Inference from SNPs
Description: Fast multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See citation('sequoia') for more information.
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman@gmail.com>
Diff between sequoia versions 0.8.1 dated 2017-03-12 and 0.9.2 dated 2017-07-17
sequoia-0.8.1/sequoia/man/AddParPed.Rd |only sequoia-0.8.1/sequoia/man/FacToNum.Rd |only sequoia-0.8.1/sequoia/man/NumToID.Rd |only sequoia-0.8.1/sequoia/man/ReadTable.Rd |only sequoia-0.8.1/sequoia/man/SibMatch.Rd |only sequoia-0.8.1/sequoia/man/Vcomp.Rd |only sequoia-0.8.1/sequoia/man/VtoM.Rd |only sequoia-0.8.1/sequoia/man/eqv.Rd |only sequoia-0.8.1/sequoia/man/grapes-ina-grapes.Rd |only sequoia-0.8.1/sequoia/man/is.wholenumber.Rd |only sequoia-0.8.1/sequoia/man/pasteD.Rd |only sequoia-0.8.1/sequoia/man/tbl.logic.Rd |only sequoia-0.8.1/sequoia/src/Makevars |only sequoia-0.8.1/sequoia/src/register.c |only sequoia-0.8.1/sequoia/src/sequoia-win.def |only sequoia-0.9.2/sequoia/DESCRIPTION | 12 sequoia-0.9.2/sequoia/MD5 | 51 - sequoia-0.9.2/sequoia/R/MkAgePrior.R | 2 sequoia-0.9.2/sequoia/R/Sequoia_F90wrappers.R | 168 +++--- sequoia-0.9.2/sequoia/R/Sequoia_Main.R | 137 +++-- sequoia-0.9.2/sequoia/R/SimulateCompare.R | 62 +- sequoia-0.9.2/sequoia/R/Utils.R | 136 ++--- sequoia-0.9.2/sequoia/R/Utils_hermaphrodites.R |only sequoia-0.9.2/sequoia/R/zzz.R |only sequoia-0.9.2/sequoia/build/vignette.rds |binary sequoia-0.9.2/sequoia/inst/CITATION |only sequoia-0.9.2/sequoia/inst/doc/sequoia.R | 213 ++++---- sequoia-0.9.2/sequoia/inst/doc/sequoia.Rnw | 656 ++++++++++++++----------- sequoia-0.9.2/sequoia/inst/doc/sequoia.pdf |binary sequoia-0.9.2/sequoia/man/PedCompare.Rd | 14 sequoia-0.9.2/sequoia/man/SeqDup.Rd | 2 sequoia-0.9.2/sequoia/man/SeqPrep.Rd | 7 sequoia-0.9.2/sequoia/man/sequoia.Rd | 50 + sequoia-0.9.2/sequoia/src/init.c |only sequoia-0.9.2/sequoia/src/sequoia.f90 | 426 ++++++++++------ sequoia-0.9.2/sequoia/vignettes/sequoia.Rnw | 656 ++++++++++++++----------- 36 files changed, 1483 insertions(+), 1109 deletions(-)
Title: Toolkit for Corpus Analysis
Description: Library for corpus analysis using the Corpus Workbench as an
efficient back end for indexing and querying large corpora. The package offers
functionality to flexibly create partitions and to carry out basic statistical
operations (count, co-occurrences etc.). The original full text of documents
can be reconstructed and inspected at any time. Beyond that, the package is
intended to serve as an interface to packages implementing advanced statistical
procedures. Respective data structures (document term matrices, term co-
occurrence matrices etc.) can be created based on the indexed corpora.
Author: Andreas Blaette
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between polmineR versions 0.7.3 dated 2017-05-24 and 0.7.4 dated 2017-07-17
polmineR-0.7.3/polmineR/R/frequencies_method.R |only polmineR-0.7.3/polmineR/R/partitionBundle_methods.R |only polmineR-0.7.3/polmineR/R/use_method.R |only polmineR-0.7.3/polmineR/man/frequencies.Rd |only polmineR-0.7.4/polmineR/DESCRIPTION | 38 +-- polmineR-0.7.4/polmineR/MD5 | 140 ++++++------ polmineR-0.7.4/polmineR/NAMESPACE | 9 polmineR-0.7.4/polmineR/NEWS | 18 + polmineR-0.7.4/polmineR/R/CQI.rcqp.R | 2 polmineR-0.7.4/polmineR/R/Labels.R |only polmineR-0.7.4/polmineR/R/RegistryFile.R | 6 polmineR-0.7.4/polmineR/R/as.DocumentTermMatrix_method.R | 58 ++++ polmineR-0.7.4/polmineR/R/as.VCorpus_method.R |only polmineR-0.7.4/polmineR/R/bundle_class.R | 2 polmineR-0.7.4/polmineR/R/context_class.R | 55 +++- polmineR-0.7.4/polmineR/R/context_method.R | 104 ++++++-- polmineR-0.7.4/polmineR/R/cooccurrences_method.R | 20 + polmineR-0.7.4/polmineR/R/cpos_method.R | 76 +++--- polmineR-0.7.4/polmineR/R/dispersion_method.R | 8 polmineR-0.7.4/polmineR/R/enrich_method.R | 151 ++++++++++--- polmineR-0.7.4/polmineR/R/features_class.R | 4 polmineR-0.7.4/polmineR/R/getEncoding_method.R | 21 - polmineR-0.7.4/polmineR/R/highlight_method.R | 31 ++ polmineR-0.7.4/polmineR/R/hits_class.R | 69 ++++- polmineR-0.7.4/polmineR/R/install.corpus_function.R | 22 + polmineR-0.7.4/polmineR/R/kwic_class.R | 56 +++- polmineR-0.7.4/polmineR/R/kwic_method.R | 64 ++--- polmineR-0.7.4/polmineR/R/label_method.R | 18 + polmineR-0.7.4/polmineR/R/ll_method.R | 12 - polmineR-0.7.4/polmineR/R/matches_method.R |only polmineR-0.7.4/polmineR/R/ngrams_method.R | 32 +- polmineR-0.7.4/polmineR/R/partitionBundle_class.R | 121 +++++++++- polmineR-0.7.4/polmineR/R/partitionBundle_method.R | 70 +++--- polmineR-0.7.4/polmineR/R/partition_class.R | 7 polmineR-0.7.4/polmineR/R/read_method.R | 2 polmineR-0.7.4/polmineR/R/registry.R | 35 +-- polmineR-0.7.4/polmineR/R/reindex_method.R | 6 polmineR-0.7.4/polmineR/R/sAttributes_method.R | 2 polmineR-0.7.4/polmineR/R/size_method.R | 6 polmineR-0.7.4/polmineR/R/templates_method.R | 28 +- polmineR-0.7.4/polmineR/R/trim_method.R | 28 ++ polmineR-0.7.4/polmineR/R/use_function.R |only polmineR-0.7.4/polmineR/R/utils.R | 30 ++ polmineR-0.7.4/polmineR/R/zzz.R | 82 +------ polmineR-0.7.4/polmineR/inst/css/tooltips2.css |only polmineR-0.7.4/polmineR/inst/css/toopltips2_test.html |only polmineR-0.7.4/polmineR/inst/doc/vignette.R | 14 + polmineR-0.7.4/polmineR/inst/doc/vignette.Rmd | 62 +++-- polmineR-0.7.4/polmineR/inst/doc/vignette.html | 51 ++-- polmineR-0.7.4/polmineR/inst/shiny/modules/cooccurrences.R | 4 polmineR-0.7.4/polmineR/inst/shiny/modules/kwic.R | 4 polmineR-0.7.4/polmineR/inst/templates |only polmineR-0.7.4/polmineR/man/Labels-class.Rd |only polmineR-0.7.4/polmineR/man/as.DocumentTermMatrix.Rd | 8 polmineR-0.7.4/polmineR/man/as.VCorpus.Rd |only polmineR-0.7.4/polmineR/man/bundle-class.Rd | 2 polmineR-0.7.4/polmineR/man/context-class.Rd | 47 +++- polmineR-0.7.4/polmineR/man/context-method.Rd | 25 +- polmineR-0.7.4/polmineR/man/cooccurrences.Rd | 10 polmineR-0.7.4/polmineR/man/cpos-method.Rd | 5 polmineR-0.7.4/polmineR/man/enrich-method.Rd | 38 +-- polmineR-0.7.4/polmineR/man/getEncoding-method.Rd | 4 polmineR-0.7.4/polmineR/man/highlight.Rd | 12 - polmineR-0.7.4/polmineR/man/hits.Rd | 3 polmineR-0.7.4/polmineR/man/install.corpus.Rd | 6 polmineR-0.7.4/polmineR/man/kwic-class.Rd | 48 +++- polmineR-0.7.4/polmineR/man/kwic.Rd | 20 + polmineR-0.7.4/polmineR/man/label_method.Rd | 10 polmineR-0.7.4/polmineR/man/matches.Rd |only polmineR-0.7.4/polmineR/man/ngrams.Rd | 2 polmineR-0.7.4/polmineR/man/partitionBundle-class.Rd | 33 +- polmineR-0.7.4/polmineR/man/partitionBundle-method.Rd | 8 polmineR-0.7.4/polmineR/man/partition_class.Rd | 29 ++ polmineR-0.7.4/polmineR/man/registry.Rd | 3 polmineR-0.7.4/polmineR/man/templates.Rd | 4 polmineR-0.7.4/polmineR/man/use.Rd | 29 +- polmineR-0.7.4/polmineR/vignettes/vignette.Rmd | 62 +++-- 77 files changed, 1326 insertions(+), 650 deletions(-)
Title: Pearson Distribution System
Description: Implementation of the Pearson distribution system, including full
support for the (d,p,q,r)-family of functions for probability distributions
and fitting via method of moments and maximum likelihood method.
Author: Martin Becker [aut, cre],
Stefan Klößner [aut]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between PearsonDS versions 1.0 dated 2017-03-03 and 1.1 dated 2017-07-17
DESCRIPTION | 8 - MD5 | 6 NEWS | 7 configure.ac | 454 +++++++++++++++++++++++++++++------------------------------ 4 files changed, 241 insertions(+), 234 deletions(-)
Title: Observatory of Economic Complexity API Wrapper and Utility
Program
Description: Access The Observatory of Economic Complexity API from R to download international trade data and create and D3Plus visualizations.
Author: Cesar A. Hidalgo [aut],
Alexander Simoes [aut],
Mauricio Vargas S. [aut, cre],
Manuel Aristaran [ctb],
Mike Bostock [ctb] (D3),
Dave Landy [ctb] (D3Plus),
Pablo H. Paladino [ctb] (Version control),
Gabriela Perez P. [ctb] (Documentation),
UN Comtrade [dtc],
MIT Media Lab [dtc],
Datawheel [fnd, cph]
Maintainer: Mauricio Vargas S. <oec@media.mit.edu>
Diff between oec versions 2.2 dated 2016-11-18 and 2.4 dated 2017-07-17
oec-2.2/oec/R/network_comparison.R |only oec-2.2/oec/data/hs92_2char.RData |only oec-2.2/oec/data/hs92_6char.RData |only oec-2.2/oec/data/hs92_8char.RData |only oec-2.2/oec/data/hs_colors.RData |only oec-2.2/oec/data/sitc_colors.RData |only oec-2.2/oec/data/sitc_rev2_2char.RData |only oec-2.2/oec/data/sitc_rev2_4char.RData |only oec-2.2/oec/inst/DESCRIPTION |only oec-2.2/oec/inst/extdata/d3plus-2.0.zip |only oec-2.2/oec/inst/extdata/edges_hs.json |only oec-2.2/oec/inst/extdata/edges_sitc.json |only oec-2.2/oec/inst/extdata/network_compare_template.html |only oec-2.2/oec/inst/extdata/nodes_hs.json |only oec-2.2/oec/inst/extdata/nodes_sitc.json |only oec-2.2/oec/man/hs92_2char.Rd |only oec-2.2/oec/man/hs92_6char.Rd |only oec-2.2/oec/man/hs92_8char.Rd |only oec-2.2/oec/man/hs_colors.Rd |only oec-2.2/oec/man/network_comparison.Rd |only oec-2.2/oec/man/sitc_colors.Rd |only oec-2.2/oec/man/sitc_rev2_2char.Rd |only oec-2.2/oec/man/sitc_rev2_4char.Rd |only oec-2.4/oec/DESCRIPTION | 34 - oec-2.4/oec/LICENSE | 4 oec-2.4/oec/MD5 | 85 +- oec-2.4/oec/NAMESPACE | 16 oec-2.4/oec/R/demos.R | 2 oec-2.4/oec/R/getdata.R | 549 +++++++---------- oec-2.4/oec/R/getdata_interval.R |only oec-2.4/oec/R/install_d3plus.R | 8 oec-2.4/oec/R/network.R | 159 ++-- oec-2.4/oec/R/network_interval.R |only oec-2.4/oec/R/oec.r | 46 - oec-2.4/oec/R/treemap.R | 105 +-- oec-2.4/oec/R/treemap_interval.R |only oec-2.4/oec/data/countries_list.RData |binary oec-2.4/oec/data/hs92.RData |only oec-2.4/oec/data/sitc.RData |only oec-2.4/oec/inst/extdata/d3plus-1.9.8.zip |only oec-2.4/oec/inst/extdata/demo_examples.R | 88 ++ oec-2.4/oec/inst/extdata/edges_hs92_4.json |only oec-2.4/oec/inst/extdata/edges_sitc_4.json |only oec-2.4/oec/inst/extdata/network_template.html | 54 + oec-2.4/oec/inst/extdata/nodes_hs92_4.json |only oec-2.4/oec/inst/extdata/nodes_sitc_4.json |only oec-2.4/oec/inst/extdata/treemap_template.html | 57 + oec-2.4/oec/man/countries_list.Rd | 10 oec-2.4/oec/man/d3plus-1.9.8.zip.Rd |only oec-2.4/oec/man/demos.Rd | 3 oec-2.4/oec/man/edges_hs92_4.json.Rd |only oec-2.4/oec/man/edges_sitc_4.json.Rd |only oec-2.4/oec/man/getdata.Rd | 33 - oec-2.4/oec/man/getdata_interval.Rd |only oec-2.4/oec/man/hs92.Rd |only oec-2.4/oec/man/install_d3plus.Rd | 3 oec-2.4/oec/man/network.Rd | 21 oec-2.4/oec/man/network_interval.Rd |only oec-2.4/oec/man/network_template.html.Rd |only oec-2.4/oec/man/nodes_hs92_4.json.Rd |only oec-2.4/oec/man/nodes_sitc_4.json.Rd |only oec-2.4/oec/man/oec-package.Rd | 49 - oec-2.4/oec/man/sitc.Rd |only oec-2.4/oec/man/treemap.Rd | 17 oec-2.4/oec/man/treemap_interval.Rd |only oec-2.4/oec/man/treemap_template.html.Rd |only 66 files changed, 709 insertions(+), 634 deletions(-)
Title: Fitting Finite Mixture of Scale Mixture of Skew-Normal
Distributions
Description: Functions to fit finite mixture of scale mixture of
skew-normal (FM-SMSN) distributions.
Author: Marcos Prates [aut, cre, trl], Victor Lachos [aut], Celso Cabral [aut]
Maintainer: Marcos Prates <marcosop@est.ufmg.br>
Diff between mixsmsn versions 1.1-2 dated 2016-08-23 and 1.1-4 dated 2017-07-17
ChangeLog | 8 ++++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/utils.R | 8 ++++---- man/smsn.search.Rd | 3 ++- 5 files changed, 22 insertions(+), 13 deletions(-)
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence
problem including two-sample, K-sample (non-parametric ANOVA), correlation,
censored, ordered and multivariate problems.
Author: Torsten Hothorn [aut, cre],
Kurt Hornik [aut],
Mark A. van de Wiel [aut],
Henric Winell [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between coin versions 1.2-0 dated 2017-06-22 and 1.2-1 dated 2017-07-17
DESCRIPTION | 8 MD5 | 30 R/ExactDistributions.R | 4 R/helpers.R | 14 build/vignette.rds |binary inst/NEWS.Rd | 12 inst/doc/LegoCondInf.pdf |binary inst/doc/MAXtest.pdf |binary inst/doc/coin.pdf |binary inst/doc/coin_implementation.pdf |binary tests/bugfixes.R | 8 tests/bugfixes.Rout.save | 12 tests/regtest_distribution.R | 335 +++----- tests/regtest_distribution.Rout.save | 517 +++---------- tests/regtest_helpers.R | 1353 ++++++++++++++++++---------------- tests/regtest_helpers.Rout.save | 1359 ++++++++++++++++++----------------- 16 files changed, 1720 insertions(+), 1932 deletions(-)
Title: Spatiotemporal Boundary Detection Model for Areal Unit Data
Description: Implements a spatiotemporal boundary detection model with a dissimilarity
metric for areal data with inference in a Bayesian setting using Markov chain
Monte Carlo (MCMC). The response variable can be modeled as Gaussian (no nugget),
probit or Tobit link and spatial correlation is introduced at each time point
through a conditional autoregressive (CAR) prior. Temporal correlation is introduced
through a hierarchical structure and can be specified as exponential or first-order
autoregressive. Full details of the package can be found in the accompanying vignette.
Author: Samuel I. Berchuck [aut, cre]
Maintainer: Samuel I. Berchuck <berchuck@ad.unc.edu>
Diff between womblR versions 1.0.0 dated 2017-06-17 and 1.0.1 dated 2017-07-17
DESCRIPTION | 12 ++++----- MD5 | 55 +++++++++++++++++++++--------------------- NAMESPACE | 1 NEWS.md |only R/DIAG_diagnostics.R | 3 +- R/MCMC_CheckInputs.R | 5 +++ R/MCMC_Create.R | 22 ++++++++++++---- R/MCMC_STBDwDM.R | 12 ++++++--- R/MCMC_Utilities.R | 1 R/PLOT_VFTimeSeries.R | 26 ++++++++++++++++++- R/RcppExports.R | 4 +-- R/womblR-package.R | 1 inst/doc/womblR-example.html | 4 +-- man/PlotVfTimeSeries.Rd | 10 ++++++- man/STBDwDM.Rd | 7 +++-- src/CovarianceFunctions.cpp | 37 ++++++++++++++++------------ src/DIAG_Conversion.cpp | 2 + src/DIAG_NormalLogLik.cpp | 4 +-- src/DIAG_SamplePPD.cpp | 4 +-- src/DIAG_TobitLogLik.cpp | 4 +-- src/DIAG_diagnostics.h | 3 +- src/DistributionFunctions.cpp | 24 ++++++++++++++++++ src/MCMC_Conversion.cpp | 2 + src/MCMC_STBDwDM.h | 8 +++--- src/MCMC_Samplers.cpp | 20 ++++++++++----- src/PRED_Conversion.cpp | 2 + src/PRED_YKrigging.cpp | 4 +-- src/PRED_predictions.h | 3 +- src/RcppExports.cpp | 10 +++---- 29 files changed, 198 insertions(+), 92 deletions(-)
Title: Detecting Differentially Expressed Genes in Time Course RNA-Seq
Data
Description: Uses a negative binomial mixed-effects (NBME) model to detect
nonparallel differential expression(NPDE) genes and parallel differential
expression(PDE) genes in the time course RNA-seq data.
Author: Fan Gao, Xiaoxiao Sun
Maintainer: Fan Gao <fangaohz@gmail.com>
Diff between timeSeq versions 1.0.2 dated 2016-10-27 and 1.0.3 dated 2017-07-17
timeSeq-1.0.2/timeSeq/R/timeSeq.permutate.R |only timeSeq-1.0.2/timeSeq/man/timeSeq.permutate.Rd |only timeSeq-1.0.2/timeSeq/man/timeSeq_1.0.2-package.Rd |only timeSeq-1.0.3/timeSeq/DESCRIPTION | 11 timeSeq-1.0.3/timeSeq/MD5 | 22 - timeSeq-1.0.3/timeSeq/NAMESPACE | 6 timeSeq-1.0.3/timeSeq/R/timeSeq.R | 279 +++++++-------------- timeSeq-1.0.3/timeSeq/inst/doc/my-vignette.R | 11 timeSeq-1.0.3/timeSeq/inst/doc/my-vignette.Rmd | 6 timeSeq-1.0.3/timeSeq/man/timeSeq.Rd | 13 timeSeq-1.0.3/timeSeq/man/timeSeq.heatmap.Rd | 8 timeSeq-1.0.3/timeSeq/man/timeSeq.screeplot.Rd | 6 timeSeq-1.0.3/timeSeq/man/timeSeq_1.0.3-package.Rd |only timeSeq-1.0.3/timeSeq/vignettes/my-vignette.Rmd | 6 14 files changed, 133 insertions(+), 235 deletions(-)
Title: Hotelling's T^2 Test and Variants
Description: A set of R functions which implements Hotelling's T^2 test and some variants of it. Functions are also included for Aitchison's additive log ratio and centred log ratio transformations.
Author: James Curran [aut, cre]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between Hotelling versions 1.0-3 dated 2017-04-21 and 1.0-4 dated 2017-07-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/hotelling.test.r | 8 ++++---- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Fragility Index
Description: Implements and extends the fragility index calculation for
dichotomous results as described in Walsh, Srinathan, McAuley,
Mrkobrada, Levine, Ribic, Molnar, Dattani, Burke, Guyatt,
Thabane, Walter, Pogue, and Devereaux (2014)
<DOI:10.1016/j.jclinepi.2013.10.019>.
Author: Kipp Johnson [aut, cre]
Maintainer: Kipp Johnson <kipp.william.johnson@gmail.com>
Diff between fragilityindex versions 0.0.8 dated 2016-11-08 and 0.1.0 dated 2017-07-17
fragilityindex-0.0.8/fragilityindex/R/glmfit2table.R |only fragilityindex-0.0.8/fragilityindex/R/logisticfragilityinternal.R |only fragilityindex-0.0.8/fragilityindex/R/survivalfragilityinternal.R |only fragilityindex-0.0.8/fragilityindex/man/glmfit2table.Rd |only fragilityindex-0.0.8/fragilityindex/man/logisticfragilityinternal.Rd |only fragilityindex-0.0.8/fragilityindex/man/survivalfragilityinternal.Rd |only fragilityindex-0.1.0/fragilityindex/DESCRIPTION | 12 fragilityindex-0.1.0/fragilityindex/LICENSE |only fragilityindex-0.1.0/fragilityindex/MD5 | 25 - fragilityindex-0.1.0/fragilityindex/NAMESPACE | 22 - fragilityindex-0.1.0/fragilityindex/R/logisticfragility.R | 144 ++++++--- fragilityindex-0.1.0/fragilityindex/R/revfragility.index.R | 2 fragilityindex-0.1.0/fragilityindex/R/survivalfragility.R | 147 ++++++++-- fragilityindex-0.1.0/fragilityindex/man/fragility.index.Rd | 1 fragilityindex-0.1.0/fragilityindex/man/logisticfragility.Rd | 29 - fragilityindex-0.1.0/fragilityindex/man/revfragility.index.Rd | 3 fragilityindex-0.1.0/fragilityindex/man/survivalfragility.Rd | 37 +- 17 files changed, 280 insertions(+), 142 deletions(-)
More information about fragilityindex at CRAN
Permanent link
Title: Fractional ARIMA (and Other Long Memory) Time Series Modeling
Description: Simulates, fits, and predicts long-memory and anti-persistent time
series, possibly mixed with ARMA, regression, transfer-function components.
Exact methods (MLE, forecasting, simulation) are used.
Author: JQ (Justin) Veenstra [aut, cre],
A.I. McLeod [aut]
Maintainer: JQ (Justin) Veenstra <jqveenstra@gmail.com>
Diff between arfima versions 1.5-0 dated 2017-07-08 and 1.5-2 dated 2017-07-17
DESCRIPTION | 8 +++--- MD5 | 16 ++++++------ R/arfima_function.R | 4 +-- R/plot.predARFIMA.R | 4 ++- R/predict.ARFIMA.R | 63 +++++++++++++++++++++++++++++++++++-------------- R/utilityfcns.R | 2 - R/zzz.R | 12 ++++++--- man/plot.predarfima.Rd | 2 + man/predict.arfima.Rd | 32 ++++++++++++++++++++++++ 9 files changed, 105 insertions(+), 38 deletions(-)
Title: Bias Reduction with Missing Binary Response
Description: Provides two main functions, il() and fil(). The il() function implements the EM algorithm developed by Ibrahim and Lipsitz (1996) <DOI:10.2307/2533068> to estimate the parameters of a logistic regression model with the missing response when the missing data mechanism is nonignorable. The fil() function implements the algorithm proposed by Maity et. al. (2017+) <https://github.com/arnabkrmaity/brlrmr> to reduce the bias produced by the method of Ibrahim and Lipsitz (1996) <DOI:10.2307/2533068>.
Author: Arnab Maity [aut, cre],
Vivek Pradhan [ctb],
Ujjwal Das [ctb]
Maintainer: Arnab Maity <akumar@stat.tamu.edu>
Diff between brlrmr versions 0.1.4 dated 2017-07-10 and 0.1.5 dated 2017-07-17
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/il.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Antares Visualizations
Description: Visualize results generated by Antares, a powerful software
developed by RTE to simulate and study electric power systems
(more information about Antares here: <https://antares.rte-france.com>).
This package provides functions that create interactive charts to help
Antares users visually explore the results of their simulations.
Author: Francois Guillem [aut, cre],
Jalal-Edine ZAWAM [ctb],
RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between antaresViz versions 0.10 dated 2017-06-20 and 0.11 dated 2017-07-17
DESCRIPTION | 12 +++---- MD5 | 20 +++++++----- NEWS | 11 +++++++ R/get_data_for_comp.R | 4 +- R/map.R | 50 +++++++++++++++++++++----------- R/map_helpers.R | 32 +++++++++++++++++++- R/map_layout.R | 25 ++++++++++++---- R/plot.R | 38 ++++++++++++------------ R/plot_heatmap.R | 2 - R/tsLegend.R | 6 +-- tests/testthat/helper-init.R |only tests/testthat/test-get_data_for_comp.R |only 12 files changed, 136 insertions(+), 64 deletions(-)
Title: Tools for Management of Survey Data and the Presentation of
Analysis Results
Description: One of the aims of this package is to make life easier for
R users who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) 'SPSS' and
'Stata' files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>
Diff between memisc versions 0.99.8 dated 2016-12-19 and 0.99.13 dated 2017-07-17
memisc-0.99.13/memisc/DESCRIPTION | 12 memisc-0.99.13/memisc/MD5 | 113 memisc-0.99.13/memisc/NAMESPACE | 49 memisc-0.99.13/memisc/R/AllInternalGenerics.R | 2 memisc-0.99.13/memisc/R/HTML.R | 1 memisc-0.99.13/memisc/R/cases.R | 2 memisc-0.99.13/memisc/R/format-html-dataframe.R | 55 memisc-0.99.13/memisc/R/format-html-ftable-matrix.R | 6 memisc-0.99.13/memisc/R/format-html-ftable.R | 12 memisc-0.99.13/memisc/R/format-html-matrix.R | 35 memisc-0.99.13/memisc/R/format-html-other.R | 7 memisc-0.99.13/memisc/R/html-tools.R | 4 memisc-0.99.13/memisc/R/import-internal-spss-portable.R | 41 memisc-0.99.13/memisc/R/import-internal-spss-syntax.R | 6 memisc-0.99.13/memisc/R/import-internal-stata.R | 4 memisc-0.99.13/memisc/R/importer-methods.R | 6 memisc-0.99.13/memisc/R/item-methods.R | 17 memisc-0.99.13/memisc/R/mtable-format-delim.R | 204 memisc-0.99.13/memisc/R/mtable-format-html.R | 422 - memisc-0.99.13/memisc/R/mtable-format-latex.R | 488 +- memisc-0.99.13/memisc/R/mtable-format-print.R | 443 + memisc-0.99.13/memisc/R/mtable-manip.R | 285 - memisc-0.99.13/memisc/R/mtable-tools-format.R | 49 memisc-0.99.13/memisc/R/mtable.R | 416 + memisc-0.99.13/memisc/R/repr-methods.R |only memisc-0.99.13/memisc/R/spss-portable-methods.R | 4 memisc-0.99.13/memisc/R/spss-syntax-methods.R | 2 memisc-0.99.13/memisc/R/spss-sysfile-methods.R | 4 memisc-0.99.13/memisc/R/stata-methods.R | 4 memisc-0.99.13/memisc/R/toLatex-dataframe.R | 36 memisc-0.99.13/memisc/R/toLatex-ftable-matrix.R | 10 memisc-0.99.13/memisc/R/tolatex-ftable.R | 8 memisc-0.99.13/memisc/R/tolatex-matrix.R | 6 memisc-0.99.13/memisc/R/withVCov.R |only memisc-0.99.13/memisc/R/zzz.R | 3 memisc-0.99.13/memisc/build/vignette.rds |binary memisc-0.99.13/memisc/inst/ChangeLog | 63 memisc-0.99.13/memisc/inst/NEWS.Rd | 29 memisc-0.99.13/memisc/inst/doc/anes48.html | 3778 ++++------------ memisc-0.99.13/memisc/inst/doc/ftable-matrix.html | 1093 ++-- memisc-0.99.13/memisc/inst/doc/items.html | 61 memisc-0.99.13/memisc/inst/doc/mtable-html.html | 417 - memisc-0.99.13/memisc/man/format_html.Rd | 3 memisc-0.99.13/memisc/man/importers.Rd | 2 memisc-0.99.13/memisc/man/mtable-format-delim.Rd | 3 memisc-0.99.13/memisc/man/mtable-format-html.Rd | 8 memisc-0.99.13/memisc/man/mtable-format-latex.Rd | 9 memisc-0.99.13/memisc/man/mtable-format-print.Rd | 3 memisc-0.99.13/memisc/man/mtable.Rd | 36 memisc-0.99.13/memisc/man/toLatexExtra.Rd | 66 memisc-0.99.13/memisc/man/withVCov.Rd |only memisc-0.99.13/memisc/src/Makevars |only memisc-0.99.13/memisc/src/dta-for-R.c | 9 memisc-0.99.13/memisc/src/init-memisc.c |only memisc-0.99.13/memisc/src/memisc-win.def |only memisc-0.99.13/memisc/src/memisc.h | 147 memisc-0.99.13/memisc/src/pspp-portableStream-for-R.c | 5 memisc-0.99.13/memisc/src/pspp-system-for-R.c | 5 memisc-0.99.13/memisc/src/readfixed.c | 2 memisc-0.99.13/memisc/src/rofile.c | 9 memisc-0.99.8/memisc/inst/NEWS.html |only 61 files changed, 3630 insertions(+), 4874 deletions(-)
Title: Toolkit Implementation of gWidgets for RGtk2
Description: Port of the gWidgets API to the RGtk2 toolkit.
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani <jverzani@gmail.com>
Diff between gWidgetsRGtk2 versions 0.0-83 dated 2014-11-26 and 0.0-84 dated 2017-07-17
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- NAMESPACE | 3 +++ R/aaaGenerics.R | 2 +- R/gedit.R | 6 +++--- R/gtext.R | 4 ++-- 6 files changed, 21 insertions(+), 18 deletions(-)
Title: Implementation of 2D Correlation Analysis in R
Description: Implementation of two-dimensional (2D) correlation analysis based
on the Fourier-transformation approach described by Isao Noda (I. Noda
(1993) <DOI:10.1366/0003702934067694>). Additionally there are two plot
functions for the resulting correlation matrix: The first one creates
colored 2D plots, while the second one generates 3D plots.
Author: Robert Geitner [cre, aut],
Robby Fritzsch [aut],
Thomas Bocklitz [aut],
Juergen Popp [ctb, cph]
Maintainer: Robert Geitner <robert.geitner@uni-jena.de>
Diff between corr2D versions 0.1.12 dated 2016-11-28 and 0.2.0 dated 2017-07-17
DESCRIPTION | 10 ++--- MD5 | 24 ++++++------ NAMESPACE | 1 R/codys2d.R |only R/corr2d_plot.R | 94 ++++++++++++++++++++++++++++++++++++++----------- build/vignette.rds |binary inst/doc/corr2D.html | 12 +++--- man/FuranMale.Rd | 1 man/codis2d.Rd |only man/corr2d.Rd | 1 man/is.corr2d.Rd | 1 man/plot_corr2d.Rd | 58 +++++++++++++++++++++++++++--- man/plot_corr2din3d.Rd | 1 man/sim2ddata.Rd | 1 14 files changed, 151 insertions(+), 53 deletions(-)
Title: Statistical Process Control for Stochastic Textured Surfaces
Description: Provides statistical process control tools for stochastic
textured surfaces. The current version supports the first tool
that monitors and diagnoses for local defects on the stochastic
textured surfaces, which was proposed by Bui and Apley (2017)
<doi:10.1080/00401706.2017.1302362>.
Author: Anh Bui [aut, cre] and Daniel Apley [ths]
Maintainer: Anh Bui <atbui@u.northwestern.edu>
Diff between spc4sts versions 0.1.1 dated 2017-07-08 and 0.2.1 dated 2017-07-17
DESCRIPTION | 11 ++++----- MD5 | 46 ++++++++++++++++++++------------------- NAMESPACE | 5 ++-- R/bp.R | 4 +-- R/bp2.R | 6 ++--- R/climit.R | 19 ++++++++++++---- R/climit2.R | 13 ++++++----- R/dataPrep.R | 30 +++++++++++++++---------- R/diagnoseLD.R | 2 + R/imposeDefect.R | 15 +++++------- R/localStat.R | 39 ++++++++++++++++++++++++++++----- R/sarGen.R | 42 ++++++----------------------------- R/showNb.R |only R/sms.R | 61 ++++++++++++++++++++++++++++------------------------ R/surfacemodel.R | 48 +++++++++++++++++++++++++++++++--------- man/bp.Rd | 4 +-- man/climit.Rd | 26 +++++++++++----------- man/dataPrep.Rd | 20 +++++------------ man/diagnoseLD.Rd | 13 ++++++----- man/imposeDefect.Rd | 16 ++++--------- man/localStat.Rd | 15 +++++++----- man/sarGen.Rd | 46 ++------------------------------------- man/showNb.Rd |only man/sms.Rd | 10 ++++---- man/surfacemodel.Rd | 17 +++++++++----- 25 files changed, 262 insertions(+), 246 deletions(-)
Title: Find Free Versions of Scholarly Publications via the oaDOI
Service
Description: This web client interfaces oaDOI <https://oadoi.org>, a service finding
free full-texts of academic papers by linking DOIs with open access journals and
repositories. It provides unified access to various data sources for open access
full-text links including Crossref, Bielefeld Academic Search Engine (BASE) and
the Directory of Open Access Journals (DOAJ). API usage is free and no
registration is required.
Author: Najko Jahn [aut, cre],
Tuija Sonkkila [ctb] (Tuija Sonkkila reviewed the package for rOpenSci,
see https://github.com/ropensci/onboarding/issues/115),
Ross Mounce [ctb] (Ross Mounce reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/115)
Maintainer: Najko Jahn <najko.jahn@gmail.com>
Diff between roadoi versions 0.2 dated 2017-05-17 and 0.3 dated 2017-07-17
DESCRIPTION | 29 ++-- MD5 | 30 ++-- NAMESPACE | 1 NEWS | 13 + R/oadoiAddins.R | 42 +++--- R/oadoi_fetch.r | 72 +++++----- R/roadoi-package.r | 2 R/utils.r | 38 ++++- README.md | 232 +++++++++++++++++++-------------- build/vignette.rds |binary inst/doc/intro.R | 5 inst/doc/intro.Rmd | 14 +- inst/doc/intro.html | 265 +++++++++++++++++++------------------- man/oadoi_fetch.Rd | 67 +++++---- tests/testthat/test_oadoi_fetch.r | 15 ++ vignettes/intro.Rmd | 14 +- 16 files changed, 504 insertions(+), 335 deletions(-)
Title: Analyzing Multiple Omics Data with an Offset Approach
Description: Fits successive Lasso models for several blocks of (omics) data with different priorities and takes the predicted values as an offset for the next block.
Author: Simon Klau, Anne-Laure Boulesteix
Maintainer: Simon Klau <simonklau@ibe.med.uni-muenchen.de>
Diff between prioritylasso versions 0.1.0 dated 2017-03-16 and 0.2.0 dated 2017-07-17
DESCRIPTION | 6 - MD5 | 24 ++-- NAMESPACE | 1 R/cvm_prioritylasso.R | 16 +- R/makeCVdivision.R |only R/predict.prioritylasso.R |only R/prioritylasso.R | 197 +++++++++++++++++++++++++++++++---- build/vignette.rds |binary inst/doc/prioritylasso_vignette.html | 8 - man/cvm_prioritylasso.Rd | 11 + man/predict.prioritylasso.Rd |only man/prioritylasso.Rd | 11 + tests/testthat/test-cvmpl.R | 2 tests/testthat/test-pl.R | 68 +++++++++--- tests/testthat/test-predict.R |only 15 files changed, 282 insertions(+), 62 deletions(-)
Title: Mixed Conditional Logit Models
Description: Specification and estimation of conditional logit models of binary
responses and multinomial counts is provided, with or without alternative-
specific random effects. The current implementation of the estimator for random
effects variances uses a Laplace approximation (or PQL) approach and thus should
be used only if groups sizes are large.
Author: Martin Elff
Maintainer: Martin Elff <mclogit@elff.eu>
Diff between mclogit versions 0.4.4 dated 2016-12-25 and 0.5.1 dated 2017-07-17
DESCRIPTION | 18 MD5 | 29 NAMESPACE | 8 R/getSummary-mblogit.R | 2 R/mblogit.R | 365 +++++++--- R/mclogit-fit.R |only R/mclogit.R | 961 ++++++++++----------------- data/Transport.rda |binary data/electors.rda |binary inst/ChangeLog | 28 inst/ChangeLog.sync-conflict-20170309-201336 |only inst/NEWS.Rd | 6 inst/NEWS.sync-conflict-20170309-201318.Rd |only man/electors.Rd | 4 man/mblogit.Rd | 31 man/mclogit.Rd | 19 man/mclogit.fit.Rd | 10 17 files changed, 729 insertions(+), 752 deletions(-)
Title: An Extension to 'ggplot2', for the Creation of Ternary Diagrams
Description: Extends the functionality of 'ggplot2', providing the capability
to plot ternary diagrams for (subset of) the 'ggplot2' geometries. Additionally,
'ggtern' has implemented several NEW geometries which are unavailable to the
standard 'ggplot2' release. For further examples and documentation, please
proceed to the 'ggtern' website.
Author: Nicholas Hamilton [aut, cre]
Maintainer: Nicholas Hamilton <nick@ggtern.com>
Diff between ggtern versions 2.2.0 dated 2016-11-23 and 2.2.1 dated 2017-07-17
DESCRIPTION | 12 +-- MD5 | 44 ++++++----- NAMESPACE | 12 +++ NEWS | 17 ++++ R/annotation-tern.R | 22 +++-- R/coord-tern.R | 146 +++++++++++++++++++++++++------------ R/geom-label-viewport.R |only R/geom-mask.R | 6 - R/geom-mean-ellipse.R |only R/geom-text-viewport.R |only R/gg-internal.R | 49 ++++++------ R/plot-build.R | 25 +++--- R/plot-construction.R | 86 ++++++++++----------- R/stat-mean-ellipse.R |only R/strip-unapproved.R | 10 ++ R/theme-defaults.R | 7 + R/theme-elements.R | 2 R/theme.R | 46 +---------- TODO | 3 build/partial.rdb |binary inst/staticdocs/README.html |only inst/staticdocs/content-index.html | 2 man/geom_confidence_tern.Rd | 3 man/geom_label_viewport.Rd |only man/geom_mean_ellipse.Rd |only man/geom_text_viewport.Rd |only man/overloaded.Rd | 9 -- 27 files changed, 288 insertions(+), 213 deletions(-)
Title: Interface to Diverse Estimation Methods of Causal Networks
Description: Unified interface for the estimation of causal networks, including
the methods 'backShift' (from package 'backShift'), 'bivariateANM' (bivariate
additive noise model), 'bivariateCAM' (bivariate causal additive model),
'CAM' (causal additive model) (from package 'CAM'), 'hiddenICP' (invariant
causal prediction with hidden variables), 'ICP' (invariant causal prediction)
(from package 'InvariantCausalPrediction'), 'GES' (greedy equivalence
search), 'GIES' (greedy interventional equivalence search), 'LINGAM', 'PC' (PC
Algorithm), 'FCI' (fast causal inference),
'RFCI' (really fast causal inference) (all from package 'pcalg') and
regression.
Author: Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>,
Nicolai Meinshausen <meinshausen@stat.math.ethz.ch>
Maintainer: Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>
Diff between CompareCausalNetworks versions 0.1.5 dated 2016-12-01 and 0.1.8 dated 2017-07-17
CompareCausalNetworks-0.1.5/CompareCausalNetworks/R/simData_unknownShiftInterventions.R |only CompareCausalNetworks-0.1.5/CompareCausalNetworks/data/simData_unknownShiftInterventions.rda |only CompareCausalNetworks-0.1.5/CompareCausalNetworks/man/simData_unknownShiftInterventions.Rd |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/DESCRIPTION | 20 CompareCausalNetworks-0.1.8/CompareCausalNetworks/MD5 | 70 +- CompareCausalNetworks-0.1.8/CompareCausalNetworks/NAMESPACE | 11 CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/checkDependencies.R | 11 CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/checkMode.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/convertForRanking.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/evaluateRanking.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/getLargestWeightForCycle.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/getParents.R | 319 +++++++--- CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/getParentsStable.R | 90 +- CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/getRanking.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/redoEval.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runARGES.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runBackShift.R | 28 CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runBivariateANM.R | 17 CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runBivariateCAM.R | 18 CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runCAM.R | 20 CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runFCI.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runFCIPlus.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runGES.R | 53 + CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runGIES.R | 55 - CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runHiddenICP.R | 64 +- CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runICP.R | 66 +- CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runLINGAM.R | 35 - CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runMMHC.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runNonparaARGES.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runNonparaFCI.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runNonparaGES.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runNonparaGIES.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runNonparaPC.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runPC.R | 32 - CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runRFCI.R | 26 CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/runRegression.R | 65 +- CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/scratch.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/setSNR.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/simData_wInterventions.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/simulate.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/R/verticalAvROC.R |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/data/simDataInv.rda |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/inst |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/man/CompareCausalNetworks-package.Rd | 2 CompareCausalNetworks-0.1.8/CompareCausalNetworks/man/getParents.Rd | 242 ++++--- CompareCausalNetworks-0.1.8/CompareCausalNetworks/man/getParentsStable.Rd | 146 ++-- CompareCausalNetworks-0.1.8/CompareCausalNetworks/man/getRanking.Rd |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/man/simDataInv.Rd |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/man/simulateInterventions.Rd |only CompareCausalNetworks-0.1.8/CompareCausalNetworks/tests/testthat/test_getParents_defaults_all_methods.R | 37 - 50 files changed, 981 insertions(+), 446 deletions(-)
More information about CompareCausalNetworks at CRAN
Permanent link
Title: Financial and Actuarial Mathematics for Life Contingencies
Description: Classes and methods that allow the user to manage life table,
actuarial tables (also multiple decrements tables). Moreover, functions to easily
perform demographic, financial and actuarial mathematics on life contingencies
insurances calculations are contained therein.
Author: Giorgio Alfredo Spedicato [cre,aut], Reinhold Kainhofer [ctb], Kevin J.
Owens [ctb], Christophe Dutang [ctb], Ernesto Schirmacher[ctb], Gian Paolo Clemente [ctb]
Maintainer: Giorgio Alfredo Spedicato <spedicato_giorgio@yahoo.it>
Diff between lifecontingencies versions 1.2.3 dated 2017-02-20 and 1.2.5 dated 2017-07-17
lifecontingencies-1.2.3/lifecontingencies/src/init.c |only lifecontingencies-1.2.5/lifecontingencies/ChangeLog | 5 lifecontingencies-1.2.5/lifecontingencies/DESCRIPTION | 13 - lifecontingencies-1.2.5/lifecontingencies/MD5 | 45 ++- lifecontingencies-1.2.5/lifecontingencies/NAMESPACE | 2 lifecontingencies-1.2.5/lifecontingencies/NEWS | 8 lifecontingencies-1.2.5/lifecontingencies/R/0_lifetableAndActuarialtableClassesAndMethods.R | 5 lifecontingencies-1.2.5/lifecontingencies/R/8_mdtFunctions.R | 25 +- lifecontingencies-1.2.5/lifecontingencies/R/RcppExports.R | 14 - lifecontingencies-1.2.5/lifecontingencies/R/data.R |only lifecontingencies-1.2.5/lifecontingencies/R/zzz.R | 7 lifecontingencies-1.2.5/lifecontingencies/build/vignette.rds |binary lifecontingencies-1.2.5/lifecontingencies/data/de_angelis_di_falco.rda |only lifecontingencies-1.2.5/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.R | 90 ++++++- lifecontingencies-1.2.5/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.Rnw | 120 +++++++++- lifecontingencies-1.2.5/lifecontingencies/inst/doc/an_introduction_to_lifecontingencies_package.pdf |binary lifecontingencies-1.2.5/lifecontingencies/inst/doc/introToLifecontingencies.pdf |binary lifecontingencies-1.2.5/lifecontingencies/inst/doc/mortality_projection.pdf |binary lifecontingencies-1.2.5/lifecontingencies/inst/doc/pensionfunding.R |only lifecontingencies-1.2.5/lifecontingencies/inst/doc/pensionfunding.Rmd |only lifecontingencies-1.2.5/lifecontingencies/inst/doc/pensionfunding.pdf |only lifecontingencies-1.2.5/lifecontingencies/man/de_angelis_di_falco.Rd |only lifecontingencies-1.2.5/lifecontingencies/man/qxt.prime.fromMdt.Rd |only lifecontingencies-1.2.5/lifecontingencies/src/RcppExports.cpp | 30 +- lifecontingencies-1.2.5/lifecontingencies/vignettes/actuarialangle.sty |only lifecontingencies-1.2.5/lifecontingencies/vignettes/actuarialsymbol.sty |only lifecontingencies-1.2.5/lifecontingencies/vignettes/an_introduction_to_lifecontingencies_package.Rnw | 120 +++++++++- lifecontingencies-1.2.5/lifecontingencies/vignettes/lifecontingenciesBiblio.bib | 11 lifecontingencies-1.2.5/lifecontingencies/vignettes/pensionfunding.Rmd |only 29 files changed, 408 insertions(+), 87 deletions(-)
More information about lifecontingencies at CRAN
Permanent link
Title: Flexible Parametric Cure Models
Description: Flexible parametric mixture and non-mixture cure models for time-to-event data.
Author: Jordan Amdahl [aut, cre]
Maintainer: Jordan Amdahl <jrdnmdhl@gmail.com>
Diff between flexsurvcure versions 0.0.1 dated 2017-05-14 and 0.0.2 dated 2017-07-17
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 3 +++ R/mixture.r | 6 +++--- R/nonmixture.R | 7 +++---- inst/doc/flexsurvcure.html | 22 +++++++++++----------- 6 files changed, 29 insertions(+), 27 deletions(-)