Title: Biodiversity Data Visualizations
Description: Provides a set of functions to create basic visualizations to quickly
preview different aspects of biodiversity information such as inventory
completeness, extent of coverage (taxonomic, temporal and geographic), gaps
and biases.
Author: Vijay Barve <vijay.barve@gmail.com>, Javier Otegui
<javier.otegui@gmail.com>
Maintainer: Vijay Barve <vijay.barve@gmail.com>
Diff between bdvis versions 0.2.15 dated 2017-03-08 and 0.2.18 dated 2017-07-20
DESCRIPTION | 8 ++++---- MD5 | 36 ++++++++++++++++++------------------ NEWS | 6 ++++++ R/bdcalendarheat.R | 4 ++-- R/chronohorogram.R | 4 ++-- R/distrigraph.R | 34 +++++++++++++++++++++++++++++----- R/format_bdvis.R | 6 ++++-- R/gettaxo.R | 2 +- R/mapgrid.R | 4 +++- README.md | 2 ++ man/bdcalendarheat.Rd | 2 +- man/bdsummary.Rd | 3 ++- man/chronohorogram.Rd | 4 ++-- man/distrigraph.Rd | 10 ++++++---- man/fixstr.Rd | 3 ++- man/format_bdvis.Rd | 7 ++++++- man/getcellid.Rd | 3 ++- man/gettaxo.Rd | 5 +++-- man/mapgrid.Rd | 2 +- 19 files changed, 96 insertions(+), 49 deletions(-)
Title: 'Sparklines' in the 'R' Terminal
Description: A 'sparkline' is a line chart, without axes and labels.
Its goal is to show the general shape of changes over time, or
another quantity. This package is an 'R' implementation
of the original shell project: <http://zachholman.com/spark/>.
Author: Gábor Csárdi
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between spark versions 1.0.1 dated 2015-07-12 and 2.0.0 dated 2017-07-20
spark-1.0.1/spark/R/matrices.r |only spark-1.0.1/spark/R/pretty-package.r |only spark-1.0.1/spark/R/scale.r |only spark-1.0.1/spark/R/spark.r |only spark-1.0.1/spark/R/sparklines.r |only spark-1.0.1/spark/R/utils.r |only spark-1.0.1/spark/inst/README.md |only spark-1.0.1/spark/tests/testthat/test-spark.r |only spark-2.0.0/spark/DESCRIPTION | 20 +++++++------ spark-2.0.0/spark/MD5 | 35 ++++++++++++----------- spark-2.0.0/spark/NAMESPACE | 7 ++-- spark-2.0.0/spark/R/matrices.R |only spark-2.0.0/spark/R/pretty-package.R |only spark-2.0.0/spark/R/scale.R |only spark-2.0.0/spark/R/spark.R |only spark-2.0.0/spark/R/sparklines.R |only spark-2.0.0/spark/R/utils.R |only spark-2.0.0/spark/inst/NEWS.md | 13 ++++++++ spark-2.0.0/spark/inst/README.Rmd | 1 spark-2.0.0/spark/inst/README.markdown |only spark-2.0.0/spark/man/spark.Rd | 12 ++----- spark-2.0.0/spark/man/spark.default.Rd | 29 ++++++++++++------- spark-2.0.0/spark/man/spark.matrix.Rd | 12 ++----- spark-2.0.0/spark/man/sparklines.Rd | 5 +-- spark-2.0.0/spark/tests/testthat/test-matrices.R |only spark-2.0.0/spark/tests/testthat/test-scaling.R |only spark-2.0.0/spark/tests/testthat/test-spark.R |only spark-2.0.0/spark/tests/testthat/test-utils.R |only 28 files changed, 77 insertions(+), 57 deletions(-)
Title: Pathwise Calibrated Sparse Shooting Algorithm
Description: Computationally efficient tools for fitting generalized linear model with convex or non-convex penalty. Users can enjoy the superior statistical property of non-convex penalty such as SCAD and MCP which has significantly less estimation error and overfitting compared to convex penalty such as lasso and ridge. Computation is handled by multi-stage convex relaxation and the PathwIse CAlibrated Sparse Shooting algOrithm (PICASSO) which exploits warm start initialization, active set updating, and strong rule for coordinate preselection to boost computation, and attains a linear convergence to a unique sparse local optimum with optimal statistical properties. The computation is memory-optimized using the sparse matrix output.
Author: Jason Ge, Xingguo Li, Mengdi Wang, Tong Zhang, Han Liu and Tuo Zhao
Maintainer: Jason Ge <jiange@princeton.edu>
Diff between picasso versions 0.5.4 dated 2016-10-06 and 1.0.1 dated 2017-07-20
DESCRIPTION | 10 +++---- MD5 | 26 ++++++++++--------- NAMESPACE | 4 +-- build/vignette.rds |binary inst/doc/PICASSO.pdf |binary inst/doc/vignette.pdf |binary src/mathutils.c | 57 +++++++++++++++++++++++++++++-------------- src/mathutils.h | 7 +++-- src/picasso-init.c |only src/picasso_gaussian_cov.c | 4 +-- src/picasso_gaussian_naive.c | 5 +-- src/picasso_logit.c | 19 +++----------- src/picasso_poisson.c | 17 +++++------- src/sse_mathfun.h |only vignettes/PICASSO.pdf |binary 15 files changed, 81 insertions(+), 68 deletions(-)
Title: L1-Norm PCA Methods
Description: Implementations of several methods for principal component analysis
using the L1 norm. The package depends on COIN-OR Clp version >=
1.12.0. The methods implemented are
PCA-L1 (Kwak 2008) <DOI:10.1109/TPAMI.2008.114>,
L1-PCA (Ke and Kanade 2003, 2005) <DOI:10.1109/CVPR.2005.309>,
L1-PCA* (Brooks, Dula, and Boone 2013) <DOI:10.1016/j.csda.2012.11.007>,
L1-PCAhp (Visentin, Prestwich and Armagan 2016)
<DOI:10.1007/978-3-319-46227-1_37>,
wPCA (Park and Klabjan 2016) <DOI: 10.1109/ICDM.2016.0054>,
awPCA (Park and Klabjan 2016) <DOI: 10.1109/ICDM.2016.0054>,
PCA-Lp (Kwak 2014) <DOI:10.1109/TCYB.2013.2262936>, and
SharpEl1-PCA (Brooks and Dula, submitted).
Author: Sapan Jot <sapan.madaan@gmail.com>, Paul Brooks
<jpbrooks@vcu.edu>,
Andrea Visentin <andrea.visentin@insight-centre.org>,
Young Woong Park <ywpark@mail.smu.edu>,
and Yi-Hui Zhou <yihui_zhou@ncsu.edu>
Maintainer: Paul Brooks <jpbrooks@vcu.edu>
Diff between pcaL1 versions 1.5.1 dated 2017-04-10 and 1.5.2 dated 2017-07-20
ChangeLog | 4 ++++ DESCRIPTION | 12 ++++++------ MD5 | 26 +++++++++++++------------- NEWS | 5 +++++ R/pcal1.R | 1 - configure | 18 +++++++++--------- configure.ac | 2 +- man/awl1pca.Rd | 2 +- man/pcaL1-package.Rd | 6 +++--- man/sharpel1pca.Rd | 1 + man/wl1pca.Rd | 2 +- src/pcal1.c | 5 ++++- src/sharpel1pca.c | 22 ++++++++++++++-------- src/type.h | 3 ++- 14 files changed, 64 insertions(+), 45 deletions(-)
Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame like objects,
both in memory and out of memory.
Author: Hadley Wickham [aut, cre],
Romain Francois [aut],
Lionel Henry [aut],
Kirill Müller [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dplyr versions 0.7.1 dated 2017-06-22 and 0.7.2 dated 2017-07-20
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++-------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/dr.R |only R/zzz.r | 22 ---------------------- README.md | 4 ++-- build/vignette.rds |binary inst/doc/programming.html | 4 ++-- inst/include/dplyr_RcppExports.h | 2 +- man/dr_dplyr.Rd |only 11 files changed, 23 insertions(+), 38 deletions(-)
Title: Dynamic Correlation Analysis for High Dimensional Data
Description: Finding dominant latent signals that regulate dynamic correlation between many pairs of variables.
Author: Tianwei Yu <tianwei.yu@emory.edu>
Maintainer: Tianwei Yu <tianwei.yu@emory.edu>
Diff between DCA versions 1.0 dated 2017-04-11 and 2.0 dated 2017-07-20
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 1 + R/find.xy.R | 47 +++++++++++++++++++++++++++++++++-------------- man/DCA-package.Rd | 2 ++ man/find.xy.Rd | 8 ++++---- 6 files changed, 49 insertions(+), 27 deletions(-)
Title: Bayesian Regression Models using Stan
Description: Fit Bayesian generalized (non-)linear multilevel models
using Stan for full Bayesian inference. A wide range of distributions
and link functions are supported, allowing users to fit -- among others --
linear, robust linear, count data, survival, response times, ordinal,
zero-inflated, hurdle, and even self-defined mixture models all in a
multilevel context. Further modeling options include non-linear and
smooth terms, auto-correlation structures, censored data, meta-analytic
standard errors, and quite a few more. In addition, all parameters of the
response distribution can be predicted in order to perform distributional
regression. Prior specifications are flexible and explicitly encourage
users to apply prior distributions that actually reflect their beliefs.
Model fit can easily be assessed and compared with posterior predictive
checks and leave-one-out cross-validation.
Author: Paul-Christian Bürkner [aut, cre]
Maintainer: Paul-Christian Bürkner <paul.buerkner@gmail.com>
Diff between brms versions 1.7.0 dated 2017-05-23 and 1.8.0 dated 2017-07-20
brms-1.7.0/brms/inst/chunks/data_arma.stan |only brms-1.8.0/brms/DESCRIPTION | 20 brms-1.8.0/brms/MD5 | 167 ++--- brms-1.8.0/brms/NAMESPACE | 23 brms-1.8.0/brms/R/brm.R | 99 +-- brms-1.8.0/brms/R/brmsfit-helpers.R | 327 +--------- brms-1.8.0/brms/R/brmsfit-methods.R | 347 +++++----- brms-1.8.0/brms/R/brmsformula.R | 8 brms-1.8.0/brms/R/correlations.R | 274 ++++++++ brms-1.8.0/brms/R/data-helpers.R | 179 +++-- brms-1.8.0/brms/R/data-predictor.R | 35 + brms-1.8.0/brms/R/distributions.R | 219 ++++++ brms-1.8.0/brms/R/extract_draws.R | 67 +- brms-1.8.0/brms/R/families.R | 118 ++- brms-1.8.0/brms/R/fitted.R | 35 - brms-1.8.0/brms/R/generics.R | 235 ++++++- brms-1.8.0/brms/R/linear_predictor.R | 32 brms-1.8.0/brms/R/loglik.R | 91 ++ brms-1.8.0/brms/R/loo-helpers.R |only brms-1.8.0/brms/R/make_stancode.R | 37 - brms-1.8.0/brms/R/make_standata.R | 287 +++++--- brms-1.8.0/brms/R/misc-methods.R | 40 - brms-1.8.0/brms/R/misc.R | 52 + brms-1.8.0/brms/R/predict.R | 62 + brms-1.8.0/brms/R/priors.R | 332 ++++++---- brms-1.8.0/brms/R/rename.R | 11 brms-1.8.0/brms/R/stan-helpers.R | 514 ++++++++++------ brms-1.8.0/brms/R/stan-likelihood.R | 68 +- brms-1.8.0/brms/R/stan-predictor.R | 422 +++++++------ brms-1.8.0/brms/R/sysdata.rda |binary brms-1.8.0/brms/R/validate.R | 26 brms-1.8.0/brms/inst/NEWS.Rd | 63 + brms-1.8.0/brms/inst/chunks/fun_horseshoe.stan | 14 brms-1.8.0/brms/inst/chunks/fun_normal_errorsar.stan |only brms-1.8.0/brms/inst/chunks/fun_normal_lagsar.stan |only brms-1.8.0/brms/inst/chunks/fun_sparse_car_lpdf.stan |only brms-1.8.0/brms/inst/chunks/fun_sparse_icar_lpdf.stan |only brms-1.8.0/brms/inst/chunks/fun_student_t_errorsar.stan |only brms-1.8.0/brms/inst/chunks/fun_student_t_lagsar.stan |only brms-1.8.0/brms/inst/doc/brms_distreg.html | 76 +- brms-1.8.0/brms/inst/doc/brms_families.Rmd | 13 brms-1.8.0/brms/inst/doc/brms_families.html | 12 brms-1.8.0/brms/inst/doc/brms_monotonic.html | 74 +- brms-1.8.0/brms/inst/doc/brms_multilevel.pdf |binary brms-1.8.0/brms/inst/doc/brms_nonlinear.html | 72 +- brms-1.8.0/brms/inst/doc/brms_overview.pdf |binary brms-1.8.0/brms/inst/doc/brms_phylogenetics.html | 78 +- brms-1.8.0/brms/man/LOO.Rd | 33 - brms-1.8.0/brms/man/SkewNormal.Rd |only brms-1.8.0/brms/man/WAIC.Rd | 10 brms-1.8.0/brms/man/add_ic.Rd | 16 brms-1.8.0/brms/man/add_loo.Rd |only brms-1.8.0/brms/man/add_waic.Rd |only brms-1.8.0/brms/man/brm.Rd | 42 - brms-1.8.0/brms/man/brmsfamily.Rd | 40 - brms-1.8.0/brms/man/brmsfit-class.Rd | 126 +-- brms-1.8.0/brms/man/compare_ic.Rd | 2 brms-1.8.0/brms/man/cor_ar.Rd | 11 brms-1.8.0/brms/man/cor_arma.Rd | 20 brms-1.8.0/brms/man/cor_arr.Rd | 8 brms-1.8.0/brms/man/cor_brms.Rd | 33 - brms-1.8.0/brms/man/cor_bsts.Rd | 3 brms-1.8.0/brms/man/cor_car.Rd |only brms-1.8.0/brms/man/cor_ma.Rd | 11 brms-1.8.0/brms/man/cor_sar.Rd |only brms-1.8.0/brms/man/fitted.brmsfit.Rd | 13 brms-1.8.0/brms/man/get_prior.Rd | 8 brms-1.8.0/brms/man/horseshoe.Rd | 68 +- brms-1.8.0/brms/man/is.cor_brms.Rd | 6 brms-1.8.0/brms/man/kfold.Rd |only brms-1.8.0/brms/man/lasso.Rd | 22 brms-1.8.0/brms/man/log_lik.brmsfit.Rd | 10 brms-1.8.0/brms/man/make_stancode.Rd | 23 brms-1.8.0/brms/man/make_standata.Rd | 13 brms-1.8.0/brms/man/pp_check.brmsfit.Rd | 11 brms-1.8.0/brms/man/pp_mixture.Rd | 12 brms-1.8.0/brms/man/predict.brmsfit.Rd | 21 brms-1.8.0/brms/man/reloo.Rd |only brms-1.8.0/brms/man/residuals.brmsfit.Rd | 17 brms-1.8.0/brms/man/set_prior.Rd | 67 -- brms-1.8.0/brms/tests/testthat/tests.brm.R | 4 brms-1.8.0/brms/tests/testthat/tests.brmsfit-helpers.R | 13 brms-1.8.0/brms/tests/testthat/tests.brmsfit-methods.R | 8 brms-1.8.0/brms/tests/testthat/tests.distributions.R | 58 + brms-1.8.0/brms/tests/testthat/tests.fitted.R | 18 brms-1.8.0/brms/tests/testthat/tests.loglik.R | 35 + brms-1.8.0/brms/tests/testthat/tests.make_stancode.R | 185 ++++- brms-1.8.0/brms/tests/testthat/tests.make_standata.R | 94 ++ brms-1.8.0/brms/tests/testthat/tests.misc.R | 6 brms-1.8.0/brms/tests/testthat/tests.predict.R | 30 brms-1.8.0/brms/tests/testthat/tests.priors.R | 26 brms-1.8.0/brms/vignettes/brms_families.Rmd | 13 92 files changed, 3714 insertions(+), 1951 deletions(-)
Title: Tools for Mapping of Quantitative Traits of Genetically Related
Individuals and Calculating Identity Coefficients from
Pedigrees
Description: This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances.
Author: Riyan Cheng [aut, cre]
Maintainer: Riyan Cheng <riyancheng@hotmail.com>
Diff between QTLRel versions 0.2-15 dated 2015-11-12 and 0.2-16 dated 2017-07-20
ChangeLog | 1 DESCRIPTION | 13 +- MD5 | 81 ++++++------ NAMESPACE | 5 R/estVC.R | 279 +++++++++++++++++++++++++++++++++---------- R/hapSim.R | 7 - R/idcoef.R | 7 - R/pedRecode.R | 37 ++++- R/qqPlot.R | 34 +++-- R/scan.R | 34 +++-- R/zzz.R | 6 data/datalist |only data/miscEx.RData |binary inst/doc/QTLRel_Tutorial.R | 27 ---- inst/doc/QTLRel_Tutorial.pdf |binary man/aicVC.Rd | 40 +++--- man/blup.Rd | 2 man/cic.Rd | 14 +- man/estVC.Rd | 27 ++-- man/genMatrix.Rd | 10 - man/genoImpute.Rd | 22 +-- man/genoProb.Rd | 20 +-- man/genoSim.Rd | 16 +- man/gls.Rd | 13 +- man/hapSim.Rd | 16 +- man/ibs.Rd | 2 man/kinship.Rd | 2 man/lodci.Rd | 14 +- man/mAIC.Rd | 26 ++-- man/miscEx.Rd | 10 - man/nullSim.Rd | 34 ++--- man/pedRecode.Rd | 11 + man/plots.Rd | 18 +- man/qqplot.Rd | 61 +++++---- man/qtlVar.Rd | 10 - man/rem.Rd | 4 man/scanOne.Rd | 24 +-- man/scanTwo.Rd | 20 +-- src/imFn.c | 18 +- src/init.c |only src/rgdat.c | 6 src/xxx.c |only src/xxx.h | 46 ------- 43 files changed, 590 insertions(+), 427 deletions(-)
Title: Tools for Mapping Multiple Complex Traits
Description: Provides tools for joint analysis of multiple traits in a backcross (BC) or recombinant inbred lines (RIL) population. It can be used to select an optimal subset of traits for multiple-trait mapping, analyze multiple traits via the SURE model, which can associate different QTL with different traits, and perform multiple-trait composite multiple-interval mapping.
Author: Riyan Cheng [aut, cre]
Maintainer: Riyan Cheng <riyancheng@hotmail.com>
Diff between qtlmt versions 0.1-4 dated 2015-11-12 and 0.1-5 dated 2017-07-20
DESCRIPTION | 13 +++++++------ MD5 | 11 ++++++----- NAMESPACE | 2 ++ R/zzz.R | 6 +++--- data/etrait.RData |binary src/init.cc |only src/qtlmt.cc | 9 ++++----- 7 files changed, 22 insertions(+), 19 deletions(-)
Title: Automated Satellite Image Processing
Description: Efficiently perform complex satellite image processes automatically with minimum inputs.
Functions are providing more control on the user to specify how the function needs to be executed by offering more customization options and facilitate more functionalities.
The functions are designed to identify the type of input satellite images and perform accordingly.
Also, some functions are giving options to perform multiple satellite data (even from different types) in single run.
Package currently supports satellite images from most widely used Landsat 4,5,7 and 8 and ASTER L1T data.
The primary applications of this package are given below.
1. Conversion of optical bands to top of atmosphere reflectance.
2. Conversion of thermal bands to corresponding temperature images.
3. Derive application oriented products directly from source satellite image bands.
4. Compute user defined equation and produce corresponding image product.
5. Other basic tools for satellite image processing.
REFERENCES.
i. Chander and Markham (2003) <doi:10.1109/TGRS.2003.818464>.
ii. Roy et.al, (2014) <doi:10.1016/j.rse.2014.02.001>.
iii. Abrams (2000) <doi:10.1080/014311600210326>.
Author: M J Riyas [aut, cre],
T H Syed [aut]
Maintainer: M J Riyas <riyasmjgeo@gmail.com>
Diff between ASIP versions 0.3 dated 2017-07-20 and 0.3.1 dated 2017-07-20
DESCRIPTION | 15 ++++++++++----- MD5 | 2 +- 2 files changed, 11 insertions(+), 6 deletions(-)
Title: Analyse Sentiment of English Sentences
Description: Analyses sentiment of a sentence in English and assigns score to it. It can classify sentences to the following categories of sentiments:- Positive, Negative, very Positive, very negative,
Neutral. For a vector of sentences, it counts the number of sentences in each
category of sentiment.In calculating the score, negation and various degrees
of adjectives are taken into consideration. It deals only with English sentences.
Author: Subhasree Bose <subhasree10.7@gmail.com> with contributons from Saptarsi Goswami.
Maintainer: Subhasree Bose <subhasree10.7@gmail.com>
Diff between RSentiment versions 2.1.5 dated 2017-07-08 and 2.1.6 dated 2017-07-20
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/test.R | 13 ++++++++++--- 3 files changed, 16 insertions(+), 9 deletions(-)
Title: Data and Methods Around Reference Values in Pediatrics
Description: Calculation of standard deviation scores adduced from different
growth standards (WHO, UK, Germany, Italy, China, etc). Therefore, the calculation of SDS-values
for different measures like BMI, weight, height, head circumference, different
ratios, etc. are easy to carry out. Also, references for laboratory values in
children are available: serum lipids, iron-related blood parameters. In the
new version, there are also functions combining the lms() function from package 'gamlss' with
resampling methods for using with repeated measurements and family dependencies.
Author: Mandy Vogel [aut, cre]
Maintainer: Mandy Vogel <mandy.vogel@googlemail.com>
Diff between childsds versions 0.6.3 dated 2017-07-01 and 0.6.4 dated 2017-07-20
DESCRIPTION | 8 +++++--- MD5 | 20 +++++++++++--------- NEWS.md | 5 +++++ R/data.R | 17 ++++++++++++----- R/misc.R | 5 +++-- data/colombia_sf.ref.rda |only data/italian.ref.rda |binary data/turkish.ref.rda |binary man/colombia_sf.ref.Rd |only man/kiggs.ref.Rd | 4 ++-- man/make_percentile_tab.Rd | 5 +++-- man/portug.ref.Rd | 2 +- 12 files changed, 42 insertions(+), 24 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-10 0.8.4
Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis as closely as possible to the most widely used commercial software for pharmacokinetic analysis, i.e. 'Phoenix(R) WinNonlin(R)' <https://www.certara.com/software/pkpd-modeling-and-simulation/phoenix-winnonlin/>.
Some features are
1) Use of CDISC SDTM terms
2) Automatic slope selection with the same criterion of WinNonlin(R)
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between NonCompart versions 0.3.1 dated 2017-07-10 and 0.3.2 dated 2017-07-20
DESCRIPTION | 10 ++++---- MD5 | 12 ++++----- R/BestSlope.R | 50 +++++++++++++++++++++++++++++++--------- R/Slope.R | 51 +++++++++++++++++++++++++++++------------ R/sNCA.R | 46 +++++++++++++++++++++++++++--------- inst/NEWS.Rd | 5 ++++ inst/doc/NonCompart-manual.pdf |binary 7 files changed, 126 insertions(+), 48 deletions(-)
Title: In-Process Version of MonetDB for R
Description: An in-process version of MonetDB, a relational database focused on analytical tasks. Similar to SQLite, the database runs entirely inside the R shell, with the main difference that queries complete much faster thanks to MonetDB's columnar architecture.
Author: Hannes Muehleisen [aut, cre], Anthony Damico [aut], Mark Raasveldt [ctb], Thomas Lumley [ctb], MonetDB Development Team [ctb]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>
Diff between MonetDBLite versions 0.3.1 dated 2016-06-17 and 0.4.0 dated 2017-07-20
MonetDBLite-0.3.1/MonetDBLite/man/dbTransaction.Rd |only MonetDBLite-0.3.1/MonetDBLite/man/monetdb_queryinfo.Rd |only MonetDBLite-0.3.1/MonetDBLite/src/buildtools/AUTHORS |only MonetDBLite-0.3.1/MonetDBLite/src/buildtools/ChangeLog-Archive |only MonetDBLite-0.3.1/MonetDBLite/src/buildtools/ChangeLog.Jul2015 |only MonetDBLite-0.3.1/MonetDBLite/src/buildtools/ChangeLog.Jun2016 |only MonetDBLite-0.3.1/MonetDBLite/src/buildtools/Makefile.am |only MonetDBLite-0.3.1/MonetDBLite/src/buildtools/Makefile.in |only MonetDBLite-0.3.1/MonetDBLite/src/buildtools/NEWS |only MonetDBLite-0.3.1/MonetDBLite/src/buildtools/conf/Makefile.in |only MonetDBLite-0.3.1/MonetDBLite/src/common/stream/ChangeLog.Jul2015 |only MonetDBLite-0.3.1/MonetDBLite/src/common/stream/ChangeLog.Jun2016 |only MonetDBLite-0.3.1/MonetDBLite/src/common/stream/stream_socket.h |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/ChangeLog-Archive |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/ChangeLog.Jul2015 |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/ChangeLog.Jun2016 |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/bat.feps |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/bat.png |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/bat1.feps |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/bat1.png |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/bat2.feps |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/bat2.png |only MonetDBLite-0.3.1/MonetDBLite/src/gdk/libbat.rc |only MonetDBLite-0.3.1/MonetDBLite/src/libtool |only MonetDBLite-0.3.1/MonetDBLite/src/mal/ChangeLog-Archive |only MonetDBLite-0.3.1/MonetDBLite/src/mal/ChangeLog.Jul2015 |only MonetDBLite-0.3.1/MonetDBLite/src/mal/ChangeLog.Jun2016 |only MonetDBLite-0.3.1/MonetDBLite/src/mal/mal/mal_readline.c |only MonetDBLite-0.3.1/MonetDBLite/src/mal/mal/mal_readline.h |only MonetDBLite-0.3.1/MonetDBLite/src/mal/modules/atoms |only MonetDBLite-0.3.1/MonetDBLite/src/mal/modules/kernel |only MonetDBLite-0.3.1/MonetDBLite/src/mal/modules/mal |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_factorize.c |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_factorize.h |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_querylog.c |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_querylog.h |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_remoteQueries.c |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_remoteQueries.h |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_statistics.c |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_statistics.h |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_volcano.c |only MonetDBLite-0.3.1/MonetDBLite/src/mal/optimizer/opt_volcano.h |only MonetDBLite-0.3.1/MonetDBLite/src/mal/scheduler |only MonetDBLite-0.3.1/MonetDBLite/src/mal/tools |only MonetDBLite-0.3.1/MonetDBLite/src/sql/ChangeLog-Archive |only MonetDBLite-0.3.1/MonetDBLite/src/sql/ChangeLog.Jul2015 |only MonetDBLite-0.3.1/MonetDBLite/src/sql/ChangeLog.Jun2016 |only MonetDBLite-0.3.1/MonetDBLite/src/sql/backends/monet5/sql_cast_impl_down_from_int.h |only MonetDBLite-0.3.1/MonetDBLite/src/sql/backends/monet5/sql_cast_impl_up_to_int.h |only MonetDBLite-0.3.1/MonetDBLite/src/sql/backends/monet5/sql_readline.c |only MonetDBLite-0.3.1/MonetDBLite/src/sql/backends/monet5/sql_readline.h |only MonetDBLite-0.3.1/MonetDBLite/src/sql/storage/store_connections.c |only MonetDBLite-0.3.1/MonetDBLite/src/sql/storage/store_connections.h |only MonetDBLite-0.3.1/MonetDBLite/src/stamp-h1 |only MonetDBLite-0.3.1/MonetDBLite/tests/testthat/test_03_dplyr.R |only MonetDBLite-0.3.1/MonetDBLite/tests/testthat/test_04_survey.R |only MonetDBLite-0.4.0/MonetDBLite/DESCRIPTION | 11 MonetDBLite-0.4.0/MonetDBLite/MD5 | 1009 MonetDBLite-0.4.0/MonetDBLite/NAMESPACE | 7 MonetDBLite-0.4.0/MonetDBLite/R/control.R | 4 MonetDBLite-0.4.0/MonetDBLite/R/dbapply.R | 16 MonetDBLite-0.4.0/MonetDBLite/R/dbi.R | 504 MonetDBLite-0.4.0/MonetDBLite/R/dplyr.R | 168 MonetDBLite-0.4.0/MonetDBLite/R/embedded.R | 74 MonetDBLite-0.4.0/MonetDBLite/R/mapi.R | 2 MonetDBLite-0.4.0/MonetDBLite/README.md | 18 MonetDBLite-0.4.0/MonetDBLite/cleanup |only MonetDBLite-0.4.0/MonetDBLite/configure | 13 MonetDBLite-0.4.0/MonetDBLite/configure.win | 23 MonetDBLite-0.4.0/MonetDBLite/man/MonetDB.R.Rd | 11 MonetDBLite-0.4.0/MonetDBLite/man/MonetDBLite.Rd | 2 MonetDBLite-0.4.0/MonetDBLite/man/control.Rd | 4 MonetDBLite-0.4.0/MonetDBLite/man/dbSendUpdate.Rd | 17 MonetDBLite-0.4.0/MonetDBLite/man/mc.Rd | 2 MonetDBLite-0.4.0/MonetDBLite/man/monetdb.read.csv.Rd | 5 MonetDBLite-0.4.0/MonetDBLite/man/monetdblite_shutdown.Rd |only MonetDBLite-0.4.0/MonetDBLite/man/src_monetdb.Rd | 13 MonetDBLite-0.4.0/MonetDBLite/src/Makefile.am | 7 MonetDBLite-0.4.0/MonetDBLite/src/Makefile.in | 81 MonetDBLite-0.4.0/MonetDBLite/src/aclocal.m4 | 8 MonetDBLite-0.4.0/MonetDBLite/src/acout |only MonetDBLite-0.4.0/MonetDBLite/src/acout.in | 5 MonetDBLite-0.4.0/MonetDBLite/src/bootstrap | 34 MonetDBLite-0.4.0/MonetDBLite/src/buildtools/conf/Maddlog | 2 MonetDBLite-0.4.0/MonetDBLite/src/buildtools/conf/banner.bmp |binary MonetDBLite-0.4.0/MonetDBLite/src/buildtools/conf/fixlicense.py | 6 MonetDBLite-0.4.0/MonetDBLite/src/buildtools/conf/monetdb.ico |binary MonetDBLite-0.4.0/MonetDBLite/src/buildtools/conf/rules.mk | 2 MonetDBLite-0.4.0/MonetDBLite/src/buildtools/conf/website.html | 4 MonetDBLite-0.4.0/MonetDBLite/src/common/Makefile.in | 75 MonetDBLite-0.4.0/MonetDBLite/src/common/options/Makefile.in | 75 MonetDBLite-0.4.0/MonetDBLite/src/common/options/getopt.c | 2 MonetDBLite-0.4.0/MonetDBLite/src/common/options/getopt1.c | 2 MonetDBLite-0.4.0/MonetDBLite/src/common/options/monet_getopt.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/common/options/monet_options.c | 2 MonetDBLite-0.4.0/MonetDBLite/src/common/options/monet_options.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/common/stream/Makefile.am | 10 MonetDBLite-0.4.0/MonetDBLite/src/common/stream/Makefile.in | 88 MonetDBLite-0.4.0/MonetDBLite/src/common/stream/monetdb-stream.pc |only MonetDBLite-0.4.0/MonetDBLite/src/common/stream/monetdb-stream.pc.in | 2 MonetDBLite-0.4.0/MonetDBLite/src/common/stream/stream.c | 3207 +- MonetDBLite-0.4.0/MonetDBLite/src/common/stream/stream.h | 66 MonetDBLite-0.4.0/MonetDBLite/src/common/utils/Makefile.in | 75 MonetDBLite-0.4.0/MonetDBLite/src/common/utils/mcrypt.c | 494 MonetDBLite-0.4.0/MonetDBLite/src/common/utils/mcrypt.h | 5 MonetDBLite-0.4.0/MonetDBLite/src/common/utils/mprompt.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/common/utils/mutils.c | 16 MonetDBLite-0.4.0/MonetDBLite/src/common/utils/mutils.h | 13 MonetDBLite-0.4.0/MonetDBLite/src/common/utils/muuid.c | 27 MonetDBLite-0.4.0/MonetDBLite/src/common/utils/muuid.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/common/utils/prompt.c | 4 MonetDBLite-0.4.0/MonetDBLite/src/configure |11524 ++----- MonetDBLite-0.4.0/MonetDBLite/src/configure.ac | 4599 --- MonetDBLite-0.4.0/MonetDBLite/src/doc.lst | 7 MonetDBLite-0.4.0/MonetDBLite/src/embedded/Makefile.am | 14 MonetDBLite-0.4.0/MonetDBLite/src/embedded/Makefile.in | 100 MonetDBLite-0.4.0/MonetDBLite/src/embedded/converters.c.h | 534 MonetDBLite-0.4.0/MonetDBLite/src/embedded/decompress.c | 5 MonetDBLite-0.4.0/MonetDBLite/src/embedded/embedded.c | 298 MonetDBLite-0.4.0/MonetDBLite/src/embedded/embedded.h | 40 MonetDBLite-0.4.0/MonetDBLite/src/embedded/embeddedr.c | 226 MonetDBLite-0.4.0/MonetDBLite/src/embedded/embeddedr.h | 6 MonetDBLite-0.4.0/MonetDBLite/src/embedded/inlined_scripts.c | 160 MonetDBLite-0.4.0/MonetDBLite/src/embedded/undef.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/embedded/windows/monetdb_config.h.in | 169 MonetDBLite-0.4.0/MonetDBLite/src/embedded/windows/pmc.sh | 2 MonetDBLite-0.4.0/MonetDBLite/src/embedded/windows/sedscript.tpl | 5 MonetDBLite-0.4.0/MonetDBLite/src/gdk/Makefile.am | 41 MonetDBLite-0.4.0/MonetDBLite/src/gdk/Makefile.in | 132 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk.h | 808 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_aggr.c | 618 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_align.c | 346 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_atomic.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_atoms.c | 707 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_atoms.h | 34 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_bat.c | 1595 - MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_batop.c | 1271 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_bbp.c | 2379 - MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_bbp.h | 13 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_calc.c | 2755 + MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_calc.h | 12 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_calc_compare.h | 111 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_calc_private.h | 108 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_cand.h | 28 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_cross.c | 133 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_delta.c | 101 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_delta.h | 26 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_firstn.c | 201 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_group.c | 643 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_hash.c | 166 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_hash.h | 48 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_heap.c | 177 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_imprints.c | 182 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_imprints.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_join.c | 1686 - MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_logger.c | 1810 - MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_logger.h | 52 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_orderidx.c |only MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_posix.c | 129 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_posix.h | 28 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_private.h | 222 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_project.c | 171 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_qsort.c | 2 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_qsort_impl.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_sample.c | 28 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_search.c | 593 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_select.c | 665 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_ssort.c | 18 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_ssort_impl.h | 8 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_storage.c | 338 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_storage.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_system.c | 120 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_system.h | 10 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_system_private.h | 4 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_tm.c | 15 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_tm.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_unique.c | 65 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_utils.c | 896 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_utils.h | 13 MonetDBLite-0.4.0/MonetDBLite/src/gdk/gdk_value.c | 79 MonetDBLite-0.4.0/MonetDBLite/src/gdk/monetdb-gdk.pc |only MonetDBLite-0.4.0/MonetDBLite/src/gdk/monetdb-gdk.pc.in | 2 MonetDBLite-0.4.0/MonetDBLite/src/install.lst | 106 MonetDBLite-0.4.0/MonetDBLite/src/libversions | 8 MonetDBLite-0.4.0/MonetDBLite/src/mal/Makefile.am | 2 MonetDBLite-0.4.0/MonetDBLite/src/mal/Makefile.in | 77 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/Makefile.am | 179 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/Makefile.in | 261 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal.c | 42 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal.h | 111 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_atom.c | 22 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_atom.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_authorize.c | 363 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_authorize.h | 22 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_builder.c | 136 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_builder.h | 5 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_client.c | 100 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_client.h | 29 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_dataflow.c | 69 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_dataflow.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_errors.h | 6 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_exception.c | 52 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_exception.h | 4 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_factory.c | 36 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_factory.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_function.c | 455 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_function.h | 18 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_import.c | 53 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_import.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_instruction.c | 925 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_instruction.h | 155 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_interpreter.c | 251 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_interpreter.h | 10 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_linker.c | 187 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_linker.h | 10 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_listing.c | 210 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_listing.h | 3 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_module.c | 651 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_module.h | 23 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_namespace.c | 2 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_namespace.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_parser.c | 268 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_parser.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_private.h | 11 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_profiler.c | 350 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_profiler.h | 12 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_resolve.c | 121 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_resolve.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_resource.c | 21 MonetDBLite-0.4.0/MonetDBLite/src/mal/mal/mal_resource.h | 4 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+++++----- MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_parser.tab.h | 1041 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_parser.y | 513 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_privileges.c | 10 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_privileges.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_qc.c | 20 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_qc.h | 6 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_scan.c | 37 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_scan.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_semantic.c | 7 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_semantic.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_symbol.c | 4 MonetDBLite-0.4.0/MonetDBLite/src/sql/server/sql_symbol.h | 4 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/Makefile.am | 11 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/Makefile.in | 90 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/Makefile.am | 10 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/Makefile.in | 85 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/bat_logger.c | 281 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/bat_logger.h | 6 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/bat_storage.c | 675 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/bat_storage.h | 4 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/bat_table.c | 226 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/bat_table.h | 4 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/bat_utils.c | 45 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/bat_utils.h | 4 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/res_table.c | 53 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/bat/res_table.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/sql_catalog.c | 14 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/sql_storage.h | 23 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/store.c | 550 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/store_dependency.c | 5 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/store_dependency.h | 2 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/store_sequence.c | 4 MonetDBLite-0.4.0/MonetDBLite/src/sql/storage/store_sequence.h | 2 MonetDBLite-0.4.0/MonetDBLite/tests/testthat/test_01_lowlevel.R | 294 MonetDBLite-0.4.0/MonetDBLite/tests/testthat/test_02_dbi.R | 341 MonetDBLite-0.4.0/MonetDBLite/tests/testthat/test_03_dbitest.R |only MonetDBLite-0.4.0/MonetDBLite/tests/testthat/test_04_dplyr.R |only MonetDBLite-0.4.0/MonetDBLite/tests/testthat/test_05_survey.R |only MonetDBLite-0.4.0/MonetDBLite/tests/testthat/test_06_ram.R |only 520 files changed, 47203 insertions(+), 52146 deletions(-)
More information about subgroup.discovery at CRAN
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Title: Data-Limited Methods Toolkit
Description: Development, simulation testing, and implementation of management
procedures for data-limited fisheries
(see Carruthers et al (2014) <doi:10.1016/j.fishres.2013.12.014>).
Author: Tom Carruthers [aut, cre],
Adrian Hordyk [aut]
Maintainer: Tom Carruthers <t.carruthers@fisheries.ubc.ca>
Diff between DLMtool versions 4.3.2 dated 2017-07-03 and 4.4 dated 2017-07-20
DLMtool-4.3.2/DLMtool/R/runMSE_old.R |only DLMtool-4.3.2/DLMtool/man/ChooseMort.Rd |only DLMtool-4.3.2/DLMtool/man/runMSE_old.Rd |only DLMtool-4.3.2/DLMtool/src/DLMtool_init.c |only DLMtool-4.4/DLMtool/DESCRIPTION | 12 DLMtool-4.4/DLMtool/MD5 | 234 ++-- DLMtool-4.4/DLMtool/NAMESPACE | 25 DLMtool-4.4/DLMtool/NEWS.md | 8 DLMtool-4.4/DLMtool/R/ChooseMort.R | 80 + DLMtool-4.4/DLMtool/R/DataObj.r | 200 +--- DLMtool-4.4/DLMtool/R/DefineClasses.r | 128 ++ DLMtool-4.4/DLMtool/R/GetMoreData.R | 9 DLMtool-4.4/DLMtool/R/Input.r | 878 ++++++++---------- DLMtool-4.4/DLMtool/R/LBSPR_MPs.r | 92 - DLMtool-4.4/DLMtool/R/MSEObj.r | 331 ++---- DLMtool-4.4/DLMtool/R/MiscFuns.r | 130 ++ DLMtool-4.4/DLMtool/R/MiscInt.r | 58 - DLMtool-4.4/DLMtool/R/Output.r | 252 +++-- DLMtool-4.4/DLMtool/R/RcppExports.R | 127 ++ DLMtool-4.4/DLMtool/R/SS2DLM.R | 7 DLMtool-4.4/DLMtool/R/SampleCpars.R | 57 - DLMtool-4.4/DLMtool/R/SampleFleetPars.r | 122 ++ DLMtool-4.4/DLMtool/R/SampleImpPars.R | 2 DLMtool-4.4/DLMtool/R/SampleStockPars.R | 64 + DLMtool-4.4/DLMtool/R/StochasticSRA.R | 383 +++++++ DLMtool-4.4/DLMtool/R/XLloadfuns.r | 22 DLMtool-4.4/DLMtool/R/plotFleet.r | 2 DLMtool-4.4/DLMtool/R/plotOM.R | 34 DLMtool-4.4/DLMtool/R/plotObsImp.R | 9 DLMtool-4.4/DLMtool/R/plotSelect.R |only DLMtool-4.4/DLMtool/R/plotStock.r | 18 DLMtool-4.4/DLMtool/R/popdyn.R |only DLMtool-4.4/DLMtool/R/runInMP.R |only DLMtool-4.4/DLMtool/R/runMSE.r | 911 +++++++------------ DLMtool-4.4/DLMtool/R/testing.R |only DLMtool-4.4/DLMtool/data/Albacore.RData |binary DLMtool-4.4/DLMtool/data/Atlantic_mackerel.RData |binary DLMtool-4.4/DLMtool/data/Blue_shark.RData |binary DLMtool-4.4/DLMtool/data/Bluefin_tuna.RData |binary DLMtool-4.4/DLMtool/data/Bluefin_tuna_WAtl.RData |binary DLMtool-4.4/DLMtool/data/Butterfish.RData |binary DLMtool-4.4/DLMtool/data/China_rockfish.RData |binary DLMtool-4.4/DLMtool/data/Cobia.RData |binary DLMtool-4.4/DLMtool/data/DecE_Dom.RData |binary DLMtool-4.4/DLMtool/data/DecE_HDom.RData |binary DLMtool-4.4/DLMtool/data/DecE_NDom.RData |binary DLMtool-4.4/DLMtool/data/Example_datafile.RData |binary DLMtool-4.4/DLMtool/data/Feasibility.RData |binary DLMtool-4.4/DLMtool/data/Feasibility2.RData |binary DLMtool-4.4/DLMtool/data/FlatE_Dom.RData |binary DLMtool-4.4/DLMtool/data/FlatE_HDom.RData |binary DLMtool-4.4/DLMtool/data/FlatE_NDom.RData |binary DLMtool-4.4/DLMtool/data/Generic_DecE.RData |binary DLMtool-4.4/DLMtool/data/Generic_FlatE.RData |binary DLMtool-4.4/DLMtool/data/Generic_IncE.RData |binary DLMtool-4.4/DLMtool/data/Generic_fleet.RData |binary DLMtool-4.4/DLMtool/data/Generic_obs.RData |binary DLMtool-4.4/DLMtool/data/Gulf_blue_tilefish.RData |binary DLMtool-4.4/DLMtool/data/Herring.RData |binary DLMtool-4.4/DLMtool/data/Imprecise_Biased.RData |binary DLMtool-4.4/DLMtool/data/Imprecise_Unbiased.RData |binary DLMtool-4.4/DLMtool/data/IncE_HDom.RData |binary DLMtool-4.4/DLMtool/data/IncE_NDom.RData |binary DLMtool-4.4/DLMtool/data/Low_Effort_Non_Target.RData |binary DLMtool-4.4/DLMtool/data/Mackerel.RData |binary DLMtool-4.4/DLMtool/data/Overages.RData |binary DLMtool-4.4/DLMtool/data/Perfect_Imp.RData |binary DLMtool-4.4/DLMtool/data/Perfect_Info.RData |binary DLMtool-4.4/DLMtool/data/Porgy.RData |binary DLMtool-4.4/DLMtool/data/Precise_Biased.RData |binary DLMtool-4.4/DLMtool/data/Precise_Unbiased.RData |binary DLMtool-4.4/DLMtool/data/Red_snapper.RData |binary DLMtool-4.4/DLMtool/data/Rockfish.RData |binary DLMtool-4.4/DLMtool/data/Simulation_1.RData |binary DLMtool-4.4/DLMtool/data/Snapper.RData |binary DLMtool-4.4/DLMtool/data/Sole.RData |binary DLMtool-4.4/DLMtool/data/Target_All_Fish.RData |binary DLMtool-4.4/DLMtool/data/Targeting_Small_Fish.RData |binary DLMtool-4.4/DLMtool/data/Toothfish.RData |binary DLMtool-4.4/DLMtool/data/ourReefFish.RData |binary DLMtool-4.4/DLMtool/data/testOM.RData |binary DLMtool-4.4/DLMtool/man/CalcInput.Rd |only DLMtool-4.4/DLMtool/man/CalcOutput.Rd |only DLMtool-4.4/DLMtool/man/ChooseM.Rd |only DLMtool-4.4/DLMtool/man/DD_R.Rd |only DLMtool-4.4/DLMtool/man/Data-class.Rd | 2 DLMtool-4.4/DLMtool/man/Fleet-class.Rd | 10 DLMtool-4.4/DLMtool/man/GetMoreData.Rd | 5 DLMtool-4.4/DLMtool/man/ICI.Rd | 8 DLMtool-4.4/DLMtool/man/ICI2.Rd | 12 DLMtool-4.4/DLMtool/man/Imp-class.Rd | 2 DLMtool-4.4/DLMtool/man/Input.Rd | 6 DLMtool-4.4/DLMtool/man/InputRec-class.Rd |only DLMtool-4.4/DLMtool/man/Iratio.Rd | 6 DLMtool-4.4/DLMtool/man/Islope1.Rd | 3 DLMtool-4.4/DLMtool/man/LSRA_MCMC_sim.Rd |only DLMtool-4.4/DLMtool/man/LSRA_opt_cpp.Rd |only DLMtool-4.4/DLMtool/man/Lratio_BHI.Rd | 12 DLMtool-4.4/DLMtool/man/Lratio_BHI2.Rd | 9 DLMtool-4.4/DLMtool/man/OM-class.Rd | 14 DLMtool-4.4/DLMtool/man/Pplot2.Rd | 4 DLMtool-4.4/DLMtool/man/SampleFleetPars.Rd | 3 DLMtool-4.4/DLMtool/man/StochasticSRA.Rd | 8 DLMtool-4.4/DLMtool/man/StochasticSRA2.Rd |only DLMtool-4.4/DLMtool/man/Stock-class.Rd | 4 DLMtool-4.4/DLMtool/man/doprojPI_cpp.Rd | 4 DLMtool-4.4/DLMtool/man/getFMSY2.Rd | 6 DLMtool-4.4/DLMtool/man/getFMSY3.Rd |only DLMtool-4.4/DLMtool/man/getFref2.Rd | 6 DLMtool-4.4/DLMtool/man/getFref3.Rd |only DLMtool-4.4/DLMtool/man/getFs.Rd |only DLMtool-4.4/DLMtool/man/getq3.Rd |only DLMtool-4.4/DLMtool/man/matlenlim.Rd | 7 DLMtool-4.4/DLMtool/man/optF.Rd |only DLMtool-4.4/DLMtool/man/optMSY.Rd |only DLMtool-4.4/DLMtool/man/optQ.Rd |only DLMtool-4.4/DLMtool/man/plot-OM.Rd | 2 DLMtool-4.4/DLMtool/man/plotM.Rd |only DLMtool-4.4/DLMtool/man/plotSelect.Rd |only DLMtool-4.4/DLMtool/man/popdyn.Rd |only DLMtool-4.4/DLMtool/man/popdynCPP.Rd |only DLMtool-4.4/DLMtool/man/popdynOneTS.Rd |only DLMtool-4.4/DLMtool/man/popdynOneTScpp.Rd |only DLMtool-4.4/DLMtool/man/projOpt_cpp.Rd | 6 DLMtool-4.4/DLMtool/man/runInMP.Rd | 2 DLMtool-4.4/DLMtool/man/runMSEnomsg.Rd |only DLMtool-4.4/DLMtool/man/simYears.Rd |only DLMtool-4.4/DLMtool/man/slotlim.Rd | 4 DLMtool-4.4/DLMtool/man/updateMSE.Rd | 10 DLMtool-4.4/DLMtool/man/validcpars.Rd |only DLMtool-4.4/DLMtool/src/LSRA_opt_cpp.cpp |only DLMtool-4.4/DLMtool/src/RcppExports.cpp | 141 ++ DLMtool-4.4/DLMtool/src/doprojPI_cpp.cpp | 144 +-- DLMtool-4.4/DLMtool/src/popddynCPP.cpp |only DLMtool-4.4/DLMtool/src/projOpt_cpp.cpp | 56 - 135 files changed, 2749 insertions(+), 1942 deletions(-)
Title: Indices of Productivity Using Data Envelopment Analysis (DEA)
Description: Levels and changes of productivity and profitability are measured with various indices.
In addition to the classic Malmquist productivity index, the 'productivity' package contains
also the multiplicatively complete Färe-Primont, Fisher, Laspeyres, Lowe, and Paasche indices.
Färe-Primont and Lowe indices verify the transitivity property and can therefore be used for
multilateral or multitemporal comparison.
Fisher, Laspeyres, Malmquist, and Paasche indices are not transitive and are only to be used for
binary comparison.
All indices can also be decomposed into different components, providing insightful information
on the sources of productivity and profitability improvements.
In the use of Malmquist productivity index, the technological change index can be further
decomposed into bias technological change components.
In the case of the Fisher, Laspeyres, Paasche and the transitive Färe-Primont and Lowe indices,
it is furthermore possible to rule out technological change. Deflated shadow prices, used in
those indices' computations, are also returned.
The package also allows to prohibit negative technological change.
All computations are carried out with the nonparametric Data Envelopment Analysis (DEA),
and several assumptions regarding returns to scale are available.
The package allows parallel computing as an option, depending on the user's computer configuration.
Author: K Hervé Dakpo [aut],
Yann Desjeux [aut, cre],
Laure Latruffe [aut]
Maintainer: Yann Desjeux <yann.desjeux@inra.fr>
Diff between productivity versions 0.2.0 dated 2017-05-11 and 1.0.0 dated 2017-07-20
productivity-0.2.0/productivity/R/auxiliary2.R |only productivity-1.0.0/productivity/DESCRIPTION | 40 +-- productivity-1.0.0/productivity/MD5 | 40 ++- productivity-1.0.0/productivity/NAMESPACE | 13 - productivity-1.0.0/productivity/NEWS.md | 55 ++++ productivity-1.0.0/productivity/R/aux_fareprim.R |only productivity-1.0.0/productivity/R/aux_fisher.R |only productivity-1.0.0/productivity/R/aux_laspeyres.R |only productivity-1.0.0/productivity/R/aux_lowe.R |only productivity-1.0.0/productivity/R/aux_malm.R |only productivity-1.0.0/productivity/R/aux_paasche.R |only productivity-1.0.0/productivity/R/auxiliary1.R | 252 +++++++++++++++----- productivity-1.0.0/productivity/R/fareprim.R | 57 ++-- productivity-1.0.0/productivity/R/fisher.R |only productivity-1.0.0/productivity/R/laspeyres.R |only productivity-1.0.0/productivity/R/lowe.R | 69 +++-- productivity-1.0.0/productivity/R/malm.R | 34 +- productivity-1.0.0/productivity/R/paasche.R |only productivity-1.0.0/productivity/R/zzz.R | 6 productivity-1.0.0/productivity/man/Changes.Rd |only productivity-1.0.0/productivity/man/Levels.Rd |only productivity-1.0.0/productivity/man/Shadowp.Rd |only productivity-1.0.0/productivity/man/fareprim.Rd | 275 +++++++++++----------- productivity-1.0.0/productivity/man/fisher.Rd |only productivity-1.0.0/productivity/man/laspeyres.Rd |only productivity-1.0.0/productivity/man/lowe.Rd | 245 ++++++++++--------- productivity-1.0.0/productivity/man/malm.Rd | 208 ++++++++-------- productivity-1.0.0/productivity/man/paasche.Rd |only productivity-1.0.0/productivity/man/usagri.Rd | 2 29 files changed, 775 insertions(+), 521 deletions(-)
Title: Web Crawler and Scraper
Description: Performs parallel web crawling and web scraping. It is designed to crawl, parse and store web pages to produce data that can be directly used for analysis application. For details see Khalil and Fakir (2017) <DOI:10.1016/j.softx.2017.04.004>.
Author: Salim Khalil [aut, cre]
Maintainer: Salim Khalil <khalilsalim1@gmail.com>
Diff between Rcrawler versions 0.1.1 dated 2017-06-17 and 0.1.2 dated 2017-07-20
Rcrawler-0.1.1/Rcrawler/R/getdistance.R |only Rcrawler-0.1.1/Rcrawler/R/getsimHash.R |only Rcrawler-0.1.1/Rcrawler/R/onLoad.R |only Rcrawler-0.1.1/Rcrawler/inst |only Rcrawler-0.1.1/Rcrawler/java |only Rcrawler-0.1.1/Rcrawler/man/getDistance.Rd |only Rcrawler-0.1.1/Rcrawler/man/getsimHash.Rd |only Rcrawler-0.1.2/Rcrawler/DESCRIPTION | 11 +++---- Rcrawler-0.1.2/Rcrawler/MD5 | 21 ++++---------- Rcrawler-0.1.2/Rcrawler/NAMESPACE | 5 --- Rcrawler-0.1.2/Rcrawler/R/LinkExtractor.R | 4 +- Rcrawler-0.1.2/Rcrawler/R/LinkNormalization.R | 3 +- Rcrawler-0.1.2/Rcrawler/R/Rcrawlerp.R | 33 +++++++++++------------ Rcrawler-0.1.2/Rcrawler/man/LinkNormalization.Rd | 3 +- Rcrawler-0.1.2/Rcrawler/man/Rcrawler.Rd | 9 ++---- 15 files changed, 37 insertions(+), 52 deletions(-)
Title: Chaos Game
Description: The main objective of the package is to enter a word of at least two letters based on which an Iterated Function System with Probabilities is constructed, and a two-dimensional fractal containing the chosen word infinitely often is generated via the Chaos Game. Additionally, the package allows to project the two-dimensional fractal on several three-dimensional surfaces and to transform the fractal into another fractal with uniform marginals.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>,
Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>
Maintainer: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>
Diff between ChaosGame versions 0.2 dated 2016-03-11 and 0.3 dated 2017-07-20
DESCRIPTION | 11 - MD5 | 12 +- R/ChaosGame-internal.R | 8 + R/plot_word3D.R | 270 +++++++++++++++++++++++++---------------------- man/ChaosGame-package.Rd | 6 - man/plot_word.Rd | 6 - man/plot_word3D.Rd | 19 ++- 7 files changed, 184 insertions(+), 148 deletions(-)
Title: Epidemiological Tool for Contact Tracing
Description: Routines for epidemiological contact tracing
and visualisation of network of contacts.
Author: Maria Noremark [aut],
Stefan Widgren [aut, cre]
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between EpiContactTrace versions 0.10.0 dated 2017-01-27 and 0.11.0 dated 2017-07-20
DESCRIPTION | 9 + MD5 | 48 +++++----- NAMESPACE | 1 NEWS | 8 + R/EpiContactTrace-package.r | 2 man/ContactTrace-class.Rd | 2 man/Contacts-class.Rd | 2 man/EpiContactTrace-package.Rd | 10 +- man/InDegree-methods.Rd | 4 man/IngoingContactChain-methods.Rd | 4 man/NetworkStructure-methods.Rd | 4 man/NetworkSummary-methods.Rd | 2 man/OutDegree-methods.Rd | 4 man/OutgoingContactChain-methods.Rd | 4 man/Report-methods.Rd | 6 - man/ReportObject.Rd | 1 man/ShortestPaths-methods.Rd | 2 man/Trace.Rd | 1 man/build_tree.Rd | 1 man/is_wholenumber.Rd | 1 man/plot-methods.Rd | 3 man/position_tree.Rd | 1 man/show-methods.Rd | 6 - man/transfers.Rd | 1 src/trace.cpp | 165 ++++++++++++++++++++---------------- 25 files changed, 159 insertions(+), 133 deletions(-)
More information about EpiContactTrace at CRAN
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