Title: Templates for Data Frames
Description: Generate data frames from templates.
Author: William Michael Landau [aut, cre]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between wildcard versions 1.0.1 dated 2017-06-16 and 1.0.2 dated 2017-07-23
DESCRIPTION | 8 MD5 | 9 - inst/doc/wildcard.Rmd | 2 inst/doc/wildcard.html | 385 +++++++++++++------------------------------- vignettes/logo-vignette.png |only vignettes/wildcard.Rmd | 2 6 files changed, 129 insertions(+), 277 deletions(-)
Title: Sparse Generalized Linear Model with L0 Approximation for
Feature Selection
Description: An efficient procedure for feature selection for generalized linear models with L0 penalty, including linear, logistic, Poisson, gamma, inverse Gaussian regression. Adaptive ridge algorithms are used to fit the models.
Author: Wenchuan Guo, Shujie Ma, Zhenqiu Liu
Maintainer: Wenchuan Guo <wguo007@ucr.edu>
Diff between l0ara versions 0.1.3 dated 2016-08-05 and 0.1.5 dated 2017-07-23
DESCRIPTION | 13 ++++++------- MD5 | 34 +++++++++++++++++----------------- NEWS | 8 ++++++++ R/RcppExports.R | 4 ++-- R/cv.l0ara.R | 8 ++++---- R/l0ara.R | 25 ++++++++++++++++++------- R/summary.R | 41 ++++++++++++++++++++++++----------------- README.md | 2 +- man/coef.cv.l0ara.Rd | 9 ++++----- man/coef.l0ara.Rd | 9 ++++----- man/cv.l0ara.Rd | 13 ++++++------- man/l0ara.Rd | 15 ++++++++------- man/plot.cv.l0ara.Rd | 9 ++++----- man/plot.l0ara.Rd | 9 ++++----- man/predict.l0ara.Rd | 9 ++++----- man/print.cv.l0ara.Rd | 11 +++++------ man/print.l0ara.Rd | 9 ++++----- src/RcppExports.cpp | 22 ++++++++++++++++------ 18 files changed, 139 insertions(+), 111 deletions(-)
Title: General Utility Functions for the 'Agricultural Production
Systems Simulator'
Description: Contains functions designed to facilitate the loading
and transformation of 'Agricultural Production Systems Simulator'
output files <https://www.apsim.info>. Input meteorological data
(also known as "weather" or "met") files can also be generated
from user supplied data.
Author: Justin Fainges
Maintainer: Justin Fainges <Justin.Fainges@csiro.au>
Diff between APSIM versions 0.9.1 dated 2016-10-19 and 0.9.2 dated 2017-07-23
DESCRIPTION | 10 +++++----- MD5 | 36 ++++++++++++++++++------------------ NAMESPACE | 1 - R/LoadAPSIMouts.R | 6 +++++- R/MetFunctions.R | 1 + R/apsim.R | 8 ++++++-- README.md | 5 +++++ man/GetApsimNGTable.Rd | 1 - man/checkCont.Rd | 1 - man/checkMet.Rd | 1 - man/getToken.Rd | 1 - man/insertTavAmp.Rd | 1 - man/kingsData.Rd | 7 ++----- man/loadApsim.Rd | 7 +++++-- man/loadMet.Rd | 1 - man/met.Rd | 7 ++----- man/metFile-class.Rd | 2 +- man/prepareMet.Rd | 2 +- man/writeMetFile.Rd | 1 - 19 files changed, 51 insertions(+), 48 deletions(-)
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical
measures, which otherwise could only be calculated with additional
effort (like standard errors or root mean squared errors). Second,
these shortcut functions are generic (if appropriate), and can be
applied not only to vectors, but also to other objects as well
(e.g., the Coefficient of Variation can be computed for vectors,
linear models, or linear mixed models; the r2()-function returns
the r-squared value for 'lm', 'glm', 'merMod' or 'lme' objects).
The focus of most functions lies on summary statistics or fit
measures for regression models, including generalized linear
models and mixed effects models. However, some of the functions
also deal with other statistical measures, like Cronbach's Alpha,
Cramer's V, Phi etc.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.10.2 dated 2017-06-27 and 0.10.3 dated 2017-07-23
sjstats-0.10.2/sjstats/man/levene_test.Rd |only sjstats-0.10.3/sjstats/DESCRIPTION | 14 sjstats-0.10.3/sjstats/MD5 | 123 +- sjstats-0.10.3/sjstats/NAMESPACE | 418 ++++----- sjstats-0.10.3/sjstats/NEWS | 317 +++---- sjstats-0.10.3/sjstats/NEWS.md | 286 +++--- sjstats-0.10.3/sjstats/R/S3-methods.R | 943 ++++++++++----------- sjstats-0.10.3/sjstats/R/boot_ci.R | 64 + sjstats-0.10.3/sjstats/R/bootstrap.R | 230 ++--- sjstats-0.10.3/sjstats/R/check_model_assumptions.R | 2 sjstats-0.10.3/sjstats/R/converge_ok.R | 141 +-- sjstats-0.10.3/sjstats/R/eta_sq.R | 179 +++ sjstats-0.10.3/sjstats/R/icc.R | 2 sjstats-0.10.3/sjstats/R/internal_consistency.R | 536 +++++------ sjstats-0.10.3/sjstats/R/overdisp.R | 31 sjstats-0.10.3/sjstats/R/pseudo_r2.R | 35 sjstats-0.10.3/sjstats/R/sjStatistics.R | 65 - sjstats-0.10.3/sjstats/R/std_b.R | 300 +++--- sjstats-0.10.3/sjstats/R/svyglmnb.R | 254 ++--- sjstats-0.10.3/sjstats/R/typical.R |only sjstats-0.10.3/sjstats/R/weight.R | 417 +++++---- sjstats-0.10.3/sjstats/README.md | 102 +- sjstats-0.10.3/sjstats/build/partial.rdb |binary sjstats-0.10.3/sjstats/man/boot_ci.Rd | 282 +++--- sjstats-0.10.3/sjstats/man/bootstrap.Rd | 178 +-- sjstats-0.10.3/sjstats/man/check_assumptions.Rd | 286 +++--- sjstats-0.10.3/sjstats/man/chisq_gof.Rd | 118 +- sjstats-0.10.3/sjstats/man/cod.Rd | 90 +- sjstats-0.10.3/sjstats/man/converge_ok.Rd | 111 +- sjstats-0.10.3/sjstats/man/cv.Rd | 122 +- sjstats-0.10.3/sjstats/man/cv_error.Rd | 98 +- sjstats-0.10.3/sjstats/man/deff.Rd | 86 - sjstats-0.10.3/sjstats/man/efc.Rd | 66 - sjstats-0.10.3/sjstats/man/eta_sq.Rd | 96 +- sjstats-0.10.3/sjstats/man/get_model_pval.Rd | 108 +- sjstats-0.10.3/sjstats/man/hoslem_gof.Rd | 92 +- sjstats-0.10.3/sjstats/man/icc.Rd | 252 ++--- sjstats-0.10.3/sjstats/man/inequ_trend.Rd | 140 +-- sjstats-0.10.3/sjstats/man/mean_n.Rd | 138 +-- sjstats-0.10.3/sjstats/man/mn.Rd | 72 - sjstats-0.10.3/sjstats/man/mwu.Rd | 104 +- sjstats-0.10.3/sjstats/man/nhanes_sample.Rd | 30 sjstats-0.10.3/sjstats/man/odds_to_rr.Rd | 154 +-- sjstats-0.10.3/sjstats/man/overdisp.Rd | 147 +-- sjstats-0.10.3/sjstats/man/pred_accuracy.Rd | 120 +- sjstats-0.10.3/sjstats/man/pred_vars.Rd | 76 - sjstats-0.10.3/sjstats/man/prop.Rd | 224 ++-- sjstats-0.10.3/sjstats/man/r2.Rd | 241 ++--- sjstats-0.10.3/sjstats/man/re_var.Rd | 126 +- sjstats-0.10.3/sjstats/man/reliab_test.Rd | 312 +++--- sjstats-0.10.3/sjstats/man/rmse.Rd | 152 +-- sjstats-0.10.3/sjstats/man/robust.Rd | 164 +-- sjstats-0.10.3/sjstats/man/se.Rd | 276 +++--- sjstats-0.10.3/sjstats/man/se_ybar.Rd | 58 - sjstats-0.10.3/sjstats/man/sjstats-package.Rd | 51 - sjstats-0.10.3/sjstats/man/smpsize_lmm.Rd | 136 +-- sjstats-0.10.3/sjstats/man/std_beta.Rd | 136 +-- sjstats-0.10.3/sjstats/man/svyglm.nb.Rd | 140 +-- sjstats-0.10.3/sjstats/man/table_values.Rd | 72 - sjstats-0.10.3/sjstats/man/typical_value.Rd |only sjstats-0.10.3/sjstats/man/var_pop.Rd | 78 - sjstats-0.10.3/sjstats/man/weight.Rd | 114 +- sjstats-0.10.3/sjstats/man/wtd_sd.Rd | 92 +- sjstats-0.10.3/sjstats/man/xtab_statistics.Rd | 220 ++-- 64 files changed, 5159 insertions(+), 4858 deletions(-)
Title: Analysis of Diffusion and Contagion Processes on Networks
Description: Empirical statistical analysis, visualization and simulation of
diffusion and contagion processes on networks. The package implements algorithms
for calculating network diffusion statistics such as transmission rate, hazard
rates, exposure models, network threshold levels, infectiousness (contagion),
and susceptibility. The package is inspired by work published in Valente,
et al., (2015) <DOI:10.1016/j.socscimed.2015.10.001>; Valente (1995) <ISBN:
9781881303213>, Myers (2000) <DOI:10.1086/303110>, Iyengar and others (2011)
<DOI:10.1287/mksc.1100.0566>, Burt (1987) <DOI:10.1086/228667>; among others.
Author: George Vega Yon [aut, cre] (Rewrite functions with Rcpp, plus new
features),
Stephanie Dyal [aut] (Package's first version),
Timothy Hayes [aut] (Package's first version),
Thomas Valente [aut, cph] (R original code)
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between netdiffuseR versions 1.18.0 dated 2017-07-18 and 1.18.1 dated 2017-07-23
netdiffuseR-1.18.0/netdiffuseR/R/igraph.R |only netdiffuseR-1.18.0/netdiffuseR/R/read_write_foreign.R |only netdiffuseR-1.18.0/netdiffuseR/man/as_diffnet.Rd |only netdiffuseR-1.18.0/netdiffuseR/man/diffnet_to_igraph.Rd |only netdiffuseR-1.18.1/netdiffuseR/ChangeLog | 6 netdiffuseR-1.18.1/netdiffuseR/DESCRIPTION | 20 - netdiffuseR-1.18.1/netdiffuseR/MD5 | 117 +++++----- netdiffuseR-1.18.1/netdiffuseR/NAMESPACE | 16 + netdiffuseR-1.18.1/netdiffuseR/R/RcppExports.R | 8 netdiffuseR-1.18.1/netdiffuseR/R/adjmat.r | 4 netdiffuseR-1.18.1/netdiffuseR/R/diffnet-class.R | 98 ++++---- netdiffuseR-1.18.1/netdiffuseR/R/diffnet-indexing.r | 4 netdiffuseR-1.18.1/netdiffuseR/R/diffnet-methods.r | 69 ++++- netdiffuseR-1.18.1/netdiffuseR/R/egonets.R | 58 ++-- netdiffuseR-1.18.1/netdiffuseR/R/graph_data.r | 2 netdiffuseR-1.18.1/netdiffuseR/R/igraph.r |only netdiffuseR-1.18.1/netdiffuseR/R/imports.r | 9 netdiffuseR-1.18.1/netdiffuseR/R/misc.R | 2 netdiffuseR-1.18.1/netdiffuseR/R/network.r |only netdiffuseR-1.18.1/netdiffuseR/R/rdiffnet.R | 58 +++- netdiffuseR-1.18.1/netdiffuseR/R/read_write_foreign.r |only netdiffuseR-1.18.1/netdiffuseR/R/rewire.r | 2 netdiffuseR-1.18.1/netdiffuseR/R/stats.R | 8 netdiffuseR-1.18.1/netdiffuseR/R/struct_equiv.R | 2 netdiffuseR-1.18.1/netdiffuseR/R/survey_to_diffnet.R | 12 - netdiffuseR-1.18.1/netdiffuseR/build/partial.rdb |binary netdiffuseR-1.18.1/netdiffuseR/inst/NEWS | 28 ++ netdiffuseR-1.18.1/netdiffuseR/inst/doc/analyzing-medical-innovation-data.R | 10 netdiffuseR-1.18.1/netdiffuseR/inst/doc/analyzing-medical-innovation-data.Rmd | 10 netdiffuseR-1.18.1/netdiffuseR/inst/doc/analyzing-medical-innovation-data.html | 43 +-- netdiffuseR-1.18.1/netdiffuseR/man/approx_geodesic.Rd | 2 netdiffuseR-1.18.1/netdiffuseR/man/as.array.diffnet.Rd | 6 netdiffuseR-1.18.1/netdiffuseR/man/as_dgCMatrix.Rd | 2 netdiffuseR-1.18.1/netdiffuseR/man/c.diffnet.Rd | 6 netdiffuseR-1.18.1/netdiffuseR/man/diffnet-arithmetic.Rd | 8 netdiffuseR-1.18.1/netdiffuseR/man/diffnet-class.Rd |only netdiffuseR-1.18.1/netdiffuseR/man/diffnet_index.Rd | 8 netdiffuseR-1.18.1/netdiffuseR/man/diffnetmatmult.Rd | 6 netdiffuseR-1.18.1/netdiffuseR/man/edgelist_to_adjmat.Rd | 2 netdiffuseR-1.18.1/netdiffuseR/man/egonet_attrs.Rd | 12 - netdiffuseR-1.18.1/netdiffuseR/man/exposure.Rd | 4 netdiffuseR-1.18.1/netdiffuseR/man/grid_distribution.Rd | 2 netdiffuseR-1.18.1/netdiffuseR/man/igraph.Rd |only netdiffuseR-1.18.1/netdiffuseR/man/isolated.Rd | 2 netdiffuseR-1.18.1/netdiffuseR/man/netdiffuseR-graphs.Rd | 6 netdiffuseR-1.18.1/netdiffuseR/man/network.Rd |only netdiffuseR-1.18.1/netdiffuseR/man/plot.diffnet.Rd |only netdiffuseR-1.18.1/netdiffuseR/man/rdiffnet.Rd | 5 netdiffuseR-1.18.1/netdiffuseR/man/read_pajek.Rd | 5 netdiffuseR-1.18.1/netdiffuseR/man/read_ucinet_head.Rd | 7 netdiffuseR-1.18.1/netdiffuseR/man/rewire_graph.Rd | 2 netdiffuseR-1.18.1/netdiffuseR/man/summary.diffnet.Rd | 6 netdiffuseR-1.18.1/netdiffuseR/man/survey_to_diffnet.Rd | 6 netdiffuseR-1.18.1/netdiffuseR/man/toa_diff.Rd | 2 netdiffuseR-1.18.1/netdiffuseR/man/transformGraphBy.Rd | 2 netdiffuseR-1.18.1/netdiffuseR/man/vertex_covariate_compare.Rd | 2 netdiffuseR-1.18.1/netdiffuseR/src/RcppExports.cpp | 9 netdiffuseR-1.18.1/netdiffuseR/src/adjmat.cpp | 92 +++---- netdiffuseR-1.18.1/netdiffuseR/src/plot.cpp | 2 netdiffuseR-1.18.1/netdiffuseR/src/stats.cpp | 2 netdiffuseR-1.18.1/netdiffuseR/tests/testthat/test-diffnet-class.R | 44 +-- netdiffuseR-1.18.1/netdiffuseR/tests/testthat/test-diffnet-methods.R | 10 netdiffuseR-1.18.1/netdiffuseR/tests/testthat/test-foreign.R | 84 ++++++- netdiffuseR-1.18.1/netdiffuseR/tests/testthat/test-random_graph.R | 4 netdiffuseR-1.18.1/netdiffuseR/vignettes/analyzing-medical-innovation-data.Rmd | 10 65 files changed, 553 insertions(+), 393 deletions(-)
Title: Tools for Polyploid Microsatellite Analysis
Description: A collection of tools to handle microsatellite data of
any ploidy (and samples of mixed ploidy) where allele copy number is not
known in partially heterozygous genotypes. It can import and export data in
ABI 'GeneMapper', 'Structure', 'ATetra', 'Tetrasat'/'Tetra', 'GenoDive', 'SPAGeDi',
'POPDIST', 'STRand', and binary presence/absence formats. It can calculate
pairwise distances between individuals using a stepwise mutation model or
infinite alleles model, with or without taking ploidies and allele frequencies
into account. These distances can be used for the calculation of clonal
diversity statistics or used for further analysis in R. Allelic diversity
statistics and Polymorphic Information Content are also available. polysat can
assist the user in estimating the ploidy of samples, and it can estimate allele
frequencies in populations, calculate pairwise or global differentiation statistics
based on those frequencies, and export allele frequencies to 'SPAGeDi' and 'adegenet'.
Functions are also included for assigning alleles to isoloci in cases where one pair
of microsatellite primers amplifies alleles from two or more independently
segregating isoloci.
Author: Lindsay V. Clark [aut, cre]
Maintainer: Lindsay V. Clark <lvclark@illinois.edu>
Diff between polysat versions 1.7-0 dated 2017-05-03 and 1.7-1 dated 2017-07-23
polysat-1.7-0/polysat/build |only polysat-1.7-0/polysat/inst/doc/allopolyVignette.R |only polysat-1.7-0/polysat/inst/doc/allopolyVignette.Rnw |only polysat-1.7-0/polysat/inst/doc/polysattutorial.Rnw |only polysat-1.7-1/polysat/DESCRIPTION | 8 polysat-1.7-1/polysat/MD5 | 30 - polysat-1.7-1/polysat/NEWS | 15 polysat-1.7-1/polysat/R/allopolyploidy.R | 58 ++- polysat-1.7-1/polysat/R/population_stats.R | 70 +++- polysat-1.7-1/polysat/inst/doc/allopolyVignette.pdf |binary polysat-1.7-1/polysat/inst/doc/polysattutorial.R | 323 ++----------------- polysat-1.7-1/polysat/inst/doc/polysattutorial.pdf |binary polysat-1.7-1/polysat/man/calcFst.Rd | 50 ++ polysat-1.7-1/polysat/man/deSilvaFreq.Rd | 6 polysat-1.7-1/polysat/man/gendata.to.genind.Rd | 2 polysat-1.7-1/polysat/vignettes/allopolyVignette.Rnw | 10 polysat-1.7-1/polysat/vignettes/allopolyVignette.pdf |only polysat-1.7-1/polysat/vignettes/polysattutorial.Rnw | 11 polysat-1.7-1/polysat/vignettes/polysattutorial.pdf |only 19 files changed, 234 insertions(+), 349 deletions(-)
Title: Containerize R Markdown Documents
Description: Persistent reproducible reporting by containerization of R Markdown documents.
Author: Nan Xiao [aut, cre],
Miaozhu Li [ctb],
Tengfei Yin [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between liftr versions 0.5 dated 2017-04-12 and 0.6 dated 2017-07-23
DESCRIPTION | 6 MD5 | 20 - NEWS.md | 6 R/lift.R | 73 ++++-- R/render_docker.R | 19 + README.md | 6 TODO | 1 build/vignette.rds |binary inst/doc/liftr-intro.html | 499 ++++++++++++++-------------------------------- man/lift.Rd | 10 man/render_docker.Rd | 18 + 11 files changed, 259 insertions(+), 399 deletions(-)
Title: Generalized Autoregressive Score Models
Description: Simulate, estimate and forecast using univariate and multivariate GAS models
as described in Ardia et al. (2016) <https://ssrn.com/abstract=2825380>.
Author: Leopoldo Catania [aut,cre], Kris Boudt [ctb], David Ardia [ctb]
Maintainer: Leopoldo Catania <leopoldo.catania@uniroma2.it>
Diff between GAS versions 0.2.3 dated 2017-07-22 and 0.2.4 dated 2017-07-23
GAS-0.2.3/GAS/inst/doc/GAS_vignette_0.2.3.Rnw |only GAS-0.2.3/GAS/inst/doc/GAS_vignette_0.2.3.pdf |only GAS-0.2.3/GAS/inst/doc/OSX |only GAS-0.2.3/GAS/vignettes/GAS_vignette_0.2.3.Rnw |only GAS-0.2.4/GAS/ChangeLog | 3 GAS-0.2.4/GAS/DESCRIPTION | 14 +- GAS-0.2.4/GAS/MD5 | 58 +++++----- GAS-0.2.4/GAS/NAMESPACE | 2 GAS-0.2.4/GAS/R/Distributions.R | 2 GAS-0.2.4/GAS/build/partial.rdb |binary GAS-0.2.4/GAS/build/vignette.rds |binary GAS-0.2.4/GAS/inst/CITATION | 2 GAS-0.2.4/GAS/inst/ExtensionTests/run_Score.R | 30 ++--- GAS-0.2.4/GAS/inst/ExtensionTests/run_Simulate.R | 38 +++--- GAS-0.2.4/GAS/inst/ExtensionTests/run_TestThat.R | 4 GAS-0.2.4/GAS/inst/doc/AddNewDistribution.pdf |binary GAS-0.2.4/GAS/inst/doc/GAS_vignette_0.2.4.Rnw |only GAS-0.2.4/GAS/inst/doc/GAS_vignette_0.2.4.pdf |only GAS-0.2.4/GAS/inst/doc/Linux/Table1.txt | 2 GAS-0.2.4/GAS/inst/doc/Linux/sink_PART_II_R3.4.1_linux-gnu.txt | 18 --- GAS-0.2.4/GAS/inst/doc/Linux/sink_PART_I_R3.4.1_linux-gnu.txt | 12 -- GAS-0.2.4/GAS/inst/doc/Mac |only GAS-0.2.4/GAS/inst/doc/Windows/Table1.txt | 2 GAS-0.2.4/GAS/inst/doc/Windows/sink_PART_II_R3.4.1_mingw32.txt | 20 +-- GAS-0.2.4/GAS/inst/doc/Windows/sink_PART_I_R3.4.1_mingw32.txt | 18 ++- GAS-0.2.4/GAS/man/GAS-package.Rd | 4 GAS-0.2.4/GAS/src/RcppExports.cpp | 1 GAS-0.2.4/GAS/src/ghskt.cpp | 56 +++++---- GAS-0.2.4/GAS/vignettes/GAS_vignette_0.2.4.Rnw |only 29 files changed, 140 insertions(+), 146 deletions(-)
Title: Ethnicity Annotation from Whole Exome Sequencing Data
Description: Reliable and rapid ethnicity annotation from whole exome sequencing data.
Author: Alessandro Romanel
Maintainer: Alessandro Romanel <alessandro.romanel@unitn.it>
Diff between EthSEQ versions 2.0.1 dated 2017-04-04 and 2.1.0 dated 2017-07-23
DESCRIPTION | 11 ++--- MD5 | 33 ++++++++-------- NAMESPACE | 5 +- NEWS |only R/combine_Models.R | 10 +++- R/ethseq_Analysis.R | 69 +++++++++++++++++++++++---------- R/ethseq_RM.R | 16 +------ R/get_Ethnicity.R | 100 +++++++++++++++++++++++++++++-------------------- R/get_Model.R | 2 R/plot_Report.R | 92 +++++++++++++++++++++++++++++++++++++++++---- R/space_Operations.R |only README.md |only build/vignette.rds |binary inst/doc/EthSEQ.R | 12 +++-- inst/doc/EthSEQ.Rmd | 14 +++--- inst/doc/EthSEQ.html | 63 ++++++++++++++++++------------ man/ethseq.Analysis.Rd | 8 ++- man/ethseq.RM.Rd | 6 -- vignettes/EthSEQ.Rmd | 14 +++--- 19 files changed, 300 insertions(+), 155 deletions(-)
Title: Interactive Collapsible Tree Diagrams using 'D3.js'
Description: Interactive Reingold-Tilford tree diagrams created using 'D3.js', where every node can be expanded and collapsed by clicking on it.
Tooltips and color gradients can be mapped to nodes using a numeric column in the source data frame.
See 'collapsibleTree' website for more information and examples.
Author: Adeel Khan [aut, cre],
Dhrumin Shah [ctb],
Mike Bostock [ctb, cph] (D3.js library, http://d3js.org)
Maintainer: Adeel Khan <AdeelK@gwu.edu>
Diff between collapsibleTree versions 0.1.4 dated 2017-03-22 and 0.1.5 dated 2017-07-23
DESCRIPTION | 17 ++- MD5 | 27 +++-- NAMESPACE | 4 R/collapsibleTree.R | 163 +++++++++--------------------------- R/collapsibleTree.data.frame.R |only R/collapsibleTree.data.tree.R |only R/collapsibleTreeSummary.R | 12 ++ README.md | 38 ++++++-- inst/examples/01rmd/Example01.Rmd | 12 ++ inst/examples/01rmd/Example01.html | 37 +++++--- inst/htmlwidgets/collapsibleTree.js | 15 +++ man/collapsibleTree.Node.Rd |only man/collapsibleTree.Rd | 84 +++++++++--------- man/collapsibleTree.data.frame.Rd |only man/collapsibleTreeSummary.Rd | 2 tests/testthat/test-error.R | 5 - tests/testthat/test-na.R |only 17 files changed, 207 insertions(+), 209 deletions(-)
More information about collapsibleTree at CRAN
Permanent link
Title: Arps Decline Curve Analysis in R
Description: Functions for Arps decline-curve analysis on oil and gas data. Includes exponential, hyperbolic, harmonic, and hyperbolic-to-exponential models as well as the preceding with initial curtailment or a period of linear rate buildup. Functions included for computing rate, cumulative production, instantaneous decline, EUR, time to economic limit, and performing least-squares best fits.
Author: Derrick Turk [aut, cre, cph]
Maintainer: Derrick Turk <dwt@terminusdatascience.com>
Diff between aRpsDCA versions 1.1.0 dated 2016-04-05 and 1.1.1 dated 2017-07-23
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 1 + R/eur.R | 6 +++++- R/s3.R | 9 ++++++--- README.md | 45 ++++++++++++++++++++++++++------------------- 6 files changed, 49 insertions(+), 34 deletions(-)
More information about ProjectionBasedClustering at CRAN
Permanent link
Title: Multidimensional Item Response Theory
Description: Analysis of dichotomous and polytomous response data using
unidimensional and multidimensional latent trait models under the Item
Response Theory paradigm. Exploratory and confirmatory models can be
estimated with quadrature (EM) or stochastic (MHRM) methods. Confirmatory
bi-factor and two-tier analyses are available for modeling item testlets.
Multiple group analysis and mixed effects designs also are available for
detecting differential item and test functioning as well as modelling
item and person covariates. Finally, latent class models such as the DINA,
DINO, multidimensional latent class, and several other discrete latent
variable models are supported.
Author: Phil Chalmers [aut, cre, cph],
Joshua Pritikin [ctb],
Alexander Robitzsch [ctb],
Mateusz Zoltak [ctb],
KwonHyun Kim [ctb],
Carl F. Falk [ctb],
Adam Meade [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between mirt versions 1.24 dated 2017-05-04 and 1.25 dated 2017-07-23
DESCRIPTION | 8 - MD5 | 267 ++++++++++++++++++++-------------------- NAMESPACE | 1 NEWS.md | 28 ++++ R/00-classes.R | 20 ++ R/02-item_methods.R | 6 R/03-estimation.R | 46 ++++-- R/DIF.R | 16 ++ R/DTF.R | 11 + R/Discrete-methods.R | 9 + R/EMstep.group.R | 16 +- R/EMstep.utils.R | 31 ++-- R/M2.R | 4 R/MDIFF.R | 4 R/MDISC.R | 4 R/MultipleGroup-methods.R | 1 R/PLCI.mirt.R | 4 R/SE.methods.R | 7 - R/SIBTEST.R | 174 +++++++++++--------------- R/SingleGroup-methods.R | 74 +++++++++-- R/areainfo.R | 4 R/averageMI.R | 4 R/bfactor.R | 6 R/boot.LR.R | 4 R/boot.mirt.R | 4 R/createGroup.R | 4 R/createItem.R | 4 R/empirical_ES.R | 4 R/empirical_plot.R | 4 R/empirical_rxx.R | 4 R/expand.table.R | 4 R/expected.item.R | 4 R/expected.test.R | 4 R/extract.group.R | 4 R/extract.item.R | 4 R/extract.mirt.R | 4 R/fixef.R | 7 + R/fscores.R | 20 ++ R/fscores.internal.R | 33 +++- R/imputeMissing.R | 4 R/itemGAM.R | 4 R/itemfit.R | 15 +- R/iteminfo.R | 4 R/itemplot.R | 4 R/key2binary.R | 4 R/lagrange.R | 4 R/marginal_rxx.R | 4 R/mdirt.R | 14 ++ R/mirt-package.R | 28 ++++ R/mirt.R | 54 +++----- R/mirt.model.R | 4 R/mirtCluster.R | 4 R/mixedmirt.R | 5 R/mod2values.R | 4 R/multipleGroup.R | 6 R/personfit.R | 4 R/poly2dich.R | 4 R/probtrace.R | 4 R/randef.R | 7 + R/simdata.R | 4 R/testinfo.R | 4 R/utils.R | 102 +++++++++------ R/wald.R | 4 build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 4 man/Bock1997.Rd | 4 man/DIF.Rd | 17 ++ man/DTF.Rd | 5 man/DiscreteClass-class.Rd | 5 man/LSAT6.Rd | 4 man/LSAT7.Rd | 4 man/M2.Rd | 4 man/MDIFF.Rd | 4 man/MDISC.Rd | 4 man/MixedClass-class.Rd | 5 man/MultipleGroupClass-class.Rd | 5 man/PLCI.mirt.Rd | 5 man/SAT12.Rd | 4 man/SIBTEST.Rd | 82 ++++++------ man/Science.Rd | 5 man/SingleGroupClass-class.Rd | 5 man/anova-method.Rd | 5 man/areainfo.Rd | 5 man/averageMI.Rd | 4 man/bfactor.Rd | 4 man/boot.LR.Rd | 5 man/boot.mirt.Rd | 5 man/coef-method.Rd | 5 man/createGroup.Rd | 5 man/createItem.Rd | 5 man/deAyala.Rd | 4 man/empirical_ES.Rd | 6 man/empirical_plot.Rd | 5 man/empirical_rxx.Rd | 5 man/expand.table.Rd | 5 man/expected.item.Rd | 5 man/expected.test.Rd | 5 man/extract.group.Rd | 5 man/extract.item.Rd | 5 man/extract.mirt.Rd | 5 man/fixef.Rd | 8 + man/fscores.Rd | 21 ++- man/imputeMissing.Rd | 5 man/itemGAM.Rd | 5 man/itemfit.Rd | 15 +- man/iteminfo.Rd | 5 man/itemplot.Rd | 5 man/key2binary.Rd | 5 man/lagrange.Rd | 5 man/logLik-method.Rd | 5 man/marginal_rxx.Rd | 5 man/mdirt.Rd | 19 ++ man/mirt-package.Rd | 5 man/mirt.Rd | 33 ++-- man/mirt.model.Rd | 5 man/mirtCluster.Rd | 5 man/mixedmirt.Rd | 6 man/mod2values.Rd | 5 man/multipleGroup.Rd | 5 man/personfit.Rd | 6 man/plot-method.Rd | 31 +++- man/poly2dich.Rd | 5 man/print-method.Rd | 5 man/probtrace.Rd | 5 man/randef.Rd | 8 + man/residuals-method.Rd | 4 man/show-method.Rd | 5 man/simdata.Rd | 4 man/summary-method.Rd | 5 man/testinfo.Rd | 5 man/vcov-method.Rd | 5 man/wald.Rd | 5 tests/tests/test-02-mirtTwo.R | 10 + tests/tests/test-11-discrete.R | 7 + 135 files changed, 1221 insertions(+), 467 deletions(-)
Title: Model-Based Boosting
Description: Functional gradient descent algorithm
(boosting) for optimizing general risk functions utilizing
component-wise (penalised) least squares estimates or regression
trees as base-learners for fitting generalized linear, additive
and interaction models to potentially high-dimensional data.
Author: Torsten Hothorn [aut],
Peter Buehlmann [aut],
Thomas Kneib [aut],
Matthias Schmid [aut],
Benjamin Hofner [aut, cre],
Fabian Sobotka [ctb],
Fabian Scheipl [ctb],
Andreas Mayr [ctb]
Maintainer: Benjamin Hofner <benjamin.hofner@pei.de>
Diff between mboost versions 2.8-0 dated 2017-05-04 and 2.8-1 dated 2017-07-23
mboost-2.8-0/mboost/man/mboost.Rd |only mboost-2.8-1/mboost/DESCRIPTION | 8 mboost-2.8-1/mboost/MD5 | 37 mboost-2.8-1/mboost/R/bl.R | 8 mboost-2.8-1/mboost/R/mboost.R | 91 mboost-2.8-1/mboost/build/partial.rdb |only mboost-2.8-1/mboost/cleanup | 140 - mboost-2.8-1/mboost/inst/NEWS.Rd | 1970 +++++++++--------- mboost-2.8-1/mboost/inst/doc/SurvivalEnsembles.pdf |binary mboost-2.8-1/mboost/inst/doc/mboost.R | 2 mboost-2.8-1/mboost/inst/doc/mboost.Rnw | 900 ++++---- mboost-2.8-1/mboost/inst/doc/mboost.pdf |binary mboost-2.8-1/mboost/inst/doc/mboost_illustrations.pdf |binary mboost-2.8-1/mboost/inst/doc/mboost_tutorial.pdf |binary mboost-2.8-1/mboost/man/baselearners.Rd | 1755 ++++++++-------- mboost-2.8-1/mboost/man/blackboost.Rd | 30 mboost-2.8-1/mboost/man/gamboost.Rd | 88 mboost-2.8-1/mboost/man/glmboost.Rd | 37 mboost-2.8-1/mboost/man/mboost_fit.Rd |only mboost-2.8-1/mboost/man/mboost_package.Rd | 636 ++--- mboost-2.8-1/mboost/vignettes/mboost.Rnw | 900 ++++---- 21 files changed, 3378 insertions(+), 3224 deletions(-)
Title: Fast Bayesian Methods for AB Testing
Description: A suite of functions that allow the user to analyze A/B test
data in a Bayesian framework. Intended to be a drop-in replacement for
common frequentist hypothesis test such as the t-test and chi-sq test.
Author: Frank Portman [aut, cre]
Maintainer: Frank Portman <frank1214@gmail.com>
Diff between bayesAB versions 0.7.0 dated 2016-10-09 and 1.0.0 dated 2017-07-23
bayesAB-0.7.0/bayesAB/R/dist-bernoulli.R |only bayesAB-0.7.0/bayesAB/R/dist-bernoulliC.R |only bayesAB-0.7.0/bayesAB/R/dist-exponential.R |only bayesAB-0.7.0/bayesAB/R/dist-lognormal.R |only bayesAB-0.7.0/bayesAB/R/dist-poisson.R |only bayesAB-0.7.0/bayesAB/R/dist-poissonC.R |only bayesAB-0.7.0/bayesAB/R/dist-uniform.R |only bayesAB-0.7.0/bayesAB/man/installPlumber.Rd |only bayesAB-1.0.0/bayesAB/DESCRIPTION | 15 bayesAB-1.0.0/bayesAB/MD5 | 109 +++--- bayesAB-1.0.0/bayesAB/NAMESPACE | 9 bayesAB-1.0.0/bayesAB/NEWS.md | 68 ++- bayesAB-1.0.0/bayesAB/R/RcppExports.R | 8 bayesAB-1.0.0/bayesAB/R/bandit.R | 151 +++----- bayesAB-1.0.0/bayesAB/R/bayesAB.R | 30 - bayesAB-1.0.0/bayesAB/R/bayesTest.R | 168 ++++++--- bayesAB-1.0.0/bayesAB/R/checks.R |only bayesAB-1.0.0/bayesAB/R/combine.R | 162 +++++++-- bayesAB-1.0.0/bayesAB/R/constructors.R |only bayesAB-1.0.0/bayesAB/R/dist-normal.R | 95 ----- bayesAB-1.0.0/bayesAB/R/generics.R | 214 +++++++---- bayesAB-1.0.0/bayesAB/R/makePlots.R | 126 +++---- bayesAB-1.0.0/bayesAB/R/plotDists.R | 288 ++++++++-------- bayesAB-1.0.0/bayesAB/R/posteriors.R |only bayesAB-1.0.0/bayesAB/R/util.R | 34 - bayesAB-1.0.0/bayesAB/README.md | 136 +++++-- bayesAB-1.0.0/bayesAB/build/vignette.rds |binary bayesAB-1.0.0/bayesAB/inst/doc/introduction.html | 124 +++--- bayesAB-1.0.0/bayesAB/man/banditize.Rd | 9 bayesAB-1.0.0/bayesAB/man/bayesAB.Rd | 19 - bayesAB-1.0.0/bayesAB/man/bayesTest.Rd | 63 ++- bayesAB-1.0.0/bayesAB/man/c.bayesTest.Rd |only bayesAB-1.0.0/bayesAB/man/combine.Rd | 37 +- bayesAB-1.0.0/bayesAB/man/deployBandit.Rd | 3 bayesAB-1.0.0/bayesAB/man/grab.Rd |only bayesAB-1.0.0/bayesAB/man/plot.bayesTest.Rd | 5 bayesAB-1.0.0/bayesAB/man/plotBeta.Rd | 1 bayesAB-1.0.0/bayesAB/man/plotDistributions.Rd |only bayesAB-1.0.0/bayesAB/man/plotGamma.Rd | 5 bayesAB-1.0.0/bayesAB/man/plotInvGamma.Rd | 5 bayesAB-1.0.0/bayesAB/man/plotLogNormal.Rd | 9 bayesAB-1.0.0/bayesAB/man/plotNormal.Rd | 5 bayesAB-1.0.0/bayesAB/man/plotPareto.Rd | 5 bayesAB-1.0.0/bayesAB/man/plotPoisson.Rd | 5 bayesAB-1.0.0/bayesAB/man/rename.Rd |only bayesAB-1.0.0/bayesAB/man/summary.bayesTest.Rd | 3 bayesAB-1.0.0/bayesAB/src/RcppExports.cpp | 16 bayesAB-1.0.0/bayesAB/src/closedTests.cpp | 20 - bayesAB-1.0.0/bayesAB/src/init.cpp |only bayesAB-1.0.0/bayesAB/tests/testthat/Rplots.pdf |binary bayesAB-1.0.0/bayesAB/tests/testthat/test-bandit.R | 7 bayesAB-1.0.0/bayesAB/tests/testthat/test-bernoulli.R | 26 - bayesAB-1.0.0/bayesAB/tests/testthat/test-bernoulliC.R | 14 bayesAB-1.0.0/bayesAB/tests/testthat/test-combine.R | 27 + bayesAB-1.0.0/bayesAB/tests/testthat/test-dists.R | 29 - bayesAB-1.0.0/bayesAB/tests/testthat/test-exponential.R | 16 bayesAB-1.0.0/bayesAB/tests/testthat/test-generics.R | 14 bayesAB-1.0.0/bayesAB/tests/testthat/test-lognormal.R | 25 - bayesAB-1.0.0/bayesAB/tests/testthat/test-normal.R | 24 - bayesAB-1.0.0/bayesAB/tests/testthat/test-poisson.R | 16 bayesAB-1.0.0/bayesAB/tests/testthat/test-poissonC.R | 15 bayesAB-1.0.0/bayesAB/tests/testthat/test-uniform.R | 12 bayesAB-1.0.0/bayesAB/tests/testthat/test-util.R | 6 bayesAB-1.0.0/bayesAB/vignettes/extra |only 64 files changed, 1244 insertions(+), 934 deletions(-)
Title: R-Based Qualitative Data Analysis
Description: Current version only supports plain text, but it can import PDF highlights if package 'rjpod' (<https://r-forge.r-project.org/projects/rqda/>) is installed.
Author: HUANG Ronggui
Maintainer: HUANG Ronggui <ronggui.huang@gmail.com>
Diff between RQDA versions 0.2-8 dated 2016-12-12 and 0.3-0 dated 2017-07-23
DESCRIPTION | 15 ++++++----- MD5 | 12 ++++----- R/Coding_Buttons.R | 17 +++++++----- R/FilesFun.R | 2 - README.md | 70 +++++++++++++++++++++++++++++++++++++++++++++-------- inst/NEWS | 3 ++ man/RQDAQuery.rd | 6 ++-- 7 files changed, 91 insertions(+), 34 deletions(-)
Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al <doi:10.2307/2533043> and the two level random effects model in Beath and Heller <doi:10.1177/1471082X0800900302>. Examples are given for their use in diagnostic testing.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken.beath@mq.edu.au>
Diff between randomLCA versions 1.0-11 dated 2017-03-01 and 1.0-12 dated 2017-07-23
DESCRIPTION | 8 - MD5 | 12 +- R/outcomeProbs.R | 224 ++++++++++++++++++++++++++------------------------ build/vignette.rds |binary inst/NEWS | 6 + man/outcomeProbs.Rd | 10 +- man/postClassProbs.Rd | 4 7 files changed, 144 insertions(+), 120 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modelling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.3.4 dated 2017-06-27 and 0.3.5 dated 2017-07-23
NNS-0.3.4/NNS/man/NNS.SD.Efficient.Set.Rd |only NNS-0.3.5/NNS/DESCRIPTION | 8 NNS-0.3.5/NNS/MD5 | 71 ++-- NNS-0.3.5/NNS/NAMESPACE | 5 NNS-0.3.5/NNS/R/ANOVA.R | 2 NNS-0.3.5/NNS/R/Co_PM_cor.R | 12 NNS-0.3.5/NNS/R/FSD.R | 24 - NNS-0.3.5/NNS/R/Multivariate_Regression.R | 2 NNS-0.3.5/NNS/R/Partial_Moments.R | 155 ++++++++++ NNS-0.3.5/NNS/R/Partition_Map.R | 15 NNS-0.3.5/NNS/R/Regression.R | 63 ++-- NNS-0.3.5/NNS/R/SD_Efficient_Set.R | 13 NNS-0.3.5/NNS/R/SSD.R | 8 NNS-0.3.5/NNS/R/Stack.R | 17 - NNS-0.3.5/NNS/R/TSD.R | 8 NNS-0.3.5/NNS/R/Uni_SD_Routines.R | 38 +- NNS-0.3.5/NNS/R/dy_d_wrt.R | 12 NNS-0.3.5/NNS/inst/doc/NNSvignette_Clustering_and_Regression.R | 6 NNS-0.3.5/NNS/inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 10 NNS-0.3.5/NNS/inst/doc/NNSvignette_Clustering_and_Regression.html | 42 +- NNS-0.3.5/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.html | 6 NNS-0.3.5/NNS/inst/doc/NNSvignette_Forecasting.html | 10 NNS-0.3.5/NNS/inst/doc/NNSvignette_Partial_Moments.R | 33 +- NNS-0.3.5/NNS/inst/doc/NNSvignette_Partial_Moments.Rmd | 45 ++ NNS-0.3.5/NNS/inst/doc/NNSvignette_Partial_Moments.html | 65 +++- NNS-0.3.5/NNS/man/LPM.ratio.Rd |only NNS-0.3.5/NNS/man/NNS.ANOVA.Rd | 2 NNS-0.3.5/NNS/man/NNS.FSD.Rd | 6 NNS-0.3.5/NNS/man/NNS.FSD.uni.Rd | 6 NNS-0.3.5/NNS/man/NNS.SD.efficient.set.Rd |only NNS-0.3.5/NNS/man/NNS.SSD.uni.Rd | 3 NNS-0.3.5/NNS/man/NNS.TSD.uni.Rd | 3 NNS-0.3.5/NNS/man/NNS.reg.Rd | 21 - NNS-0.3.5/NNS/man/NNS.stack.Rd | 14 NNS-0.3.5/NNS/man/PM.matrix.Rd |only NNS-0.3.5/NNS/man/UPM.ratio.Rd |only NNS-0.3.5/NNS/man/dy.d_.Rd | 8 NNS-0.3.5/NNS/vignettes/NNSvignette_Clustering_and_Regression.Rmd | 10 NNS-0.3.5/NNS/vignettes/NNSvignette_Partial_Moments.Rmd | 45 ++ 39 files changed, 555 insertions(+), 233 deletions(-)
Title: Joint Modelling of Multivariate Longitudinal Data and
Time-to-Event Outcomes
Description: Fits the joint model proposed by Henderson and colleagues (2000)
<doi:10.1093/biostatistics/1.4.465>, but extended to the case of multiple
continuous longitudinal measures. The time-to-event data is modelled using a
Cox proportional hazards regression model with time-varying covariates. The
multiple longitudinal outcomes are modelled using a multivariate version of the
Laird and Ware linear mixed model. The association is captured by a multivariate
latent Gaussian process. The model is estimated using a Monte Carlo Expectation
Maximization algorithm. This project is funded by the Medical Research Council
(Grant number MR/M013227/1).
Author: Graeme L. Hickey [cre, aut],
Pete Philipson [aut],
Andrea Jorgensen [aut],
Ruwanthi Kolamunnage-Dona [aut],
Paula Williamson [ctb],
Dimitris Rizopoulos [ctb, dtc] (data/renal.rda, R/hessian.R, R/vcov.R)
Maintainer: Graeme L. Hickey <graeme.hickey@liverpool.ac.uk>
Diff between joineRML versions 0.2.2 dated 2017-05-01 and 0.3.0 dated 2017-07-23
DESCRIPTION | 10 ++--- MD5 | 70 ++++++++++++++++++++++++---------------- NAMESPACE | 14 ++++++++ NEWS.md | 34 ++++++++++++++++++- R/RcppExports.R | 14 ++++---- R/S.R |only R/baseHaz.R |only R/dynLong.R |only R/dynSurv.R |only R/initsSurv.R | 9 +++-- R/logpb.R |only R/mjoint.R | 51 +++++++++++++++++------------ R/mjoint.object.R | 21 ++++++------ R/plot.dynLong.R |only R/plot.dynSurv.R |only R/print.dynLong.R |only R/print.dynSurv.R |only R/print.summary.mjoint.R | 8 ++-- R/process_newdata.R |only R/residuals.mjoint.R | 2 - R/thetaDraw.R |only README.md | 4 +- inst/doc/joineRML.Rmd | 4 +- inst/doc/joineRML.html | 13 ++++--- inst/doc/technical.Rnw | 9 ++--- inst/doc/technical.pdf |binary man/baseHaz.Rd |only man/bootSE.Rd | 2 - man/dynLong.Rd |only man/dynSurv.Rd |only man/mjoint.Rd | 26 +++++++------- man/mjoint.object.Rd | 21 ++++++------ man/plot.dynLong.Rd |only man/plot.dynSurv.Rd |only man/residuals.mjoint.Rd | 2 - src/Makevars | 3 + src/Makevars.win | 4 +- src/RcppExports.cpp | 14 ++++---- src/init.c | 28 ++++++++-------- tests/testthat/test-ancillary.R | 64 ++++++++++++++++++++++++++++++++++-- tests/testthat/test-inputs.R | 10 ++++- tests/testthat/test-models.R | 21 ++++++++++-- vignettes/joineRML.Rmd | 4 +- vignettes/technical.Rnw | 9 ++--- 44 files changed, 317 insertions(+), 154 deletions(-)
Title: Global Summary Daily Weather Data in R
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day (GSOD) weather data from
the from the USA National Centers for Environmental Information (NCEI) for
use in R. Units are converted from from United States Customary System
(USCS) units to International System of Units (SI). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure (es), actual
vapour pressure (ea) and relative humidity are calculated from the original
data and included in the final data set. The resulting data include station
identification information, state, country, latitude, longitude, elevation,
weather observations and associated flags. Data may be automatically saved
to disk. File output may be returned as a comma-separated values (CSV) or
GeoPackage (GPKG) file. Additional data are included with this R package: a
list of elevation values for stations between -60 and 60 degrees latitude
derived from the Shuttle Radar Topography Measuring Mission (SRTM). For
information on the GSOD data from NCEI, please see the GSOD readme.txt file
available from, <http://www1.ncdc.noaa.gov/pub/data/gsod/readme.txt>.
Author: Adam Sparks [aut, cre] (http://orcid.org/0000-0002-0061-8359),
Tomislav Hengl [aut] (http://orcid.org/0000-0002-9921-5129),
Andrew Nelson [aut] (http://orcid.org/0000-0002-7249-3778)
Maintainer: Adam Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 1.0.3 dated 2017-06-13 and 1.0.4 dated 2017-07-23
GSODR-1.0.3/GSODR/R/data.R |only GSODR-1.0.3/GSODR/data |only GSODR-1.0.3/GSODR/inst/doc/GSODR_output_fields.Rmd |only GSODR-1.0.3/GSODR/inst/doc/GSODR_output_fields.html |only GSODR-1.0.3/GSODR/man/country_list.Rd |only GSODR-1.0.3/GSODR/man/isd_history.Rd |only GSODR-1.0.3/GSODR/tests/testthat/test-get_station_list.R |only GSODR-1.0.3/GSODR/vignettes/GSODR_output_fields.Rmd |only GSODR-1.0.4/GSODR/DESCRIPTION | 6 GSODR-1.0.4/GSODR/MD5 | 66 - GSODR-1.0.4/GSODR/NEWS.md | 408 +++++---- GSODR-1.0.4/GSODR/R/GSODR.R | 9 GSODR-1.0.4/GSODR/R/deprecated_functions.R | 2 GSODR-1.0.4/GSODR/R/get_GSOD.R | 73 + GSODR-1.0.4/GSODR/R/nearest_stations.R | 4 GSODR-1.0.4/GSODR/R/process_gz.R | 6 GSODR-1.0.4/GSODR/R/reformat_GSOD.R | 19 GSODR-1.0.4/GSODR/R/update_station_list.R | 60 - GSODR-1.0.4/GSODR/R/zzz.R | 7 GSODR-1.0.4/GSODR/README.md | 443 +--------- GSODR-1.0.4/GSODR/build/vignette.rds |binary GSODR-1.0.4/GSODR/inst/doc/GSODR.R | 179 +++- GSODR-1.0.4/GSODR/inst/doc/GSODR.Rmd | 337 ++++++- GSODR-1.0.4/GSODR/inst/doc/GSODR.html | 250 ++++- GSODR-1.0.4/GSODR/inst/doc/Specified_stations_for_a_range_of_years.Rmd | 4 GSODR-1.0.4/GSODR/inst/doc/Specified_stations_for_a_range_of_years.html | 4 GSODR-1.0.4/GSODR/inst/extdata |only GSODR-1.0.4/GSODR/man/GSODR.Rd | 9 GSODR-1.0.4/GSODR/man/get_GSOD.Rd | 9 GSODR-1.0.4/GSODR/man/reformat_GSOD.Rd | 5 GSODR-1.0.4/GSODR/man/update_station_list.Rd | 5 GSODR-1.0.4/GSODR/tests/testthat/test-get_GSOD.R | 242 +++-- GSODR-1.0.4/GSODR/tests/testthat/test-nearest_stations.R | 4 GSODR-1.0.4/GSODR/tests/testthat/test-process_gz.R | 33 GSODR-1.0.4/GSODR/tests/testthat/test-reformat_GSOD.R | 8 GSODR-1.0.4/GSODR/tests/testthat/test-update_station_list.R |only GSODR-1.0.4/GSODR/vignettes/GSODR.Rmd | 337 ++++++- GSODR-1.0.4/GSODR/vignettes/Specified_stations_for_a_range_of_years.Rmd | 4 38 files changed, 1568 insertions(+), 965 deletions(-)
Title: Select Sparse Geoadditive Models for Spatial Prediction
Description: A model building procedure to build parsimonious geoadditive model from a large number of covariates. Continuous, binary and ordered categorical responses are supported. The model building is based on component wise gradient boosting with linear effects, smoothing splines and a smooth spatial surface to model spatial autocorrelation. The resulting covariate set after gradient boosting is further reduced through backward elimination and aggregation of factor levels. The package provides a model based bootstrap method to simulate prediction intervals for point predictions. A test data set of a soil mapping case study in Berne (Switzerland) is provided.
Author: Madlene Nussbaum [cre, aut], Andreas Papritz [ths]
Maintainer: Madlene Nussbaum <madlene.nussbaum@env.ethz.ch>
Diff between geoGAM versions 0.1-1 dated 2016-10-29 and 0.1-2 dated 2017-07-23
DESCRIPTION | 10 - MD5 | 26 +-- NEWS | 1 R/bootstrap.geogam.R | 8 - R/f.geoam.model.selection.R | 52 +++--- R/predict.geogam.R | 6 data/berne.grid.rda |binary data/berne.rda |binary man/berne.Rd | 15 - man/berne.grid.Rd | 6 man/bootstrap.geoGAM.Rd | 60 +++---- man/geoGAM.Rd | 348 +++++++++++++++++++++++++++----------------- man/methods.geoGAM.Rd | 5 man/predict.geoGAM.Rd | 46 +++-- 14 files changed, 348 insertions(+), 235 deletions(-)
Title: Efficient Initials for Computing the Maximal Eigenpair
Description: An implementation for using efficient initials to compute the
maximal eigenpair in R. It provides two algorithms to find the efficient
initials under two cases: the tridiagonal matrix case and the general matrix
case. Besides, it also provides algorithms for the next to the maximal eigenpair under
these two cases.
Author: Mu-Fa Chen <mfchen@bnu.edu.cn>
Maintainer: Xiao-Jun Mao <maoxj.ki@gmail.com>
Diff between EfficientMaxEigenpair versions 0.1.1 dated 2017-06-15 and 0.1.2 dated 2017-07-23
DESCRIPTION | 10 ++-- MD5 | 34 +++++++------- R/eff.ini.maxeig.general.R | 7 +-- R/eff.ini.maxeig.tri.R | 81 ++++++++++++++++++++++++----------- R/eff.ini.seceig.general.R | 7 +-- R/eff.ini.seceig.tri.R | 5 +- R/ray.quot.R | 7 ++- build/vignette.rds |binary inst/doc/EfficientMaxEigenpair.Rmd | 3 - inst/doc/EfficientMaxEigenpair.pdf |binary man/eff.ini.maxeig.general.Rd | 4 - man/eff.ini.maxeig.tri.Rd | 4 - man/eff.ini.seceig.general.Rd | 4 - man/eff.ini.seceig.tri.Rd | 4 - man/ray.quot.Rd | 4 - man/tridiag.Rd | 1 vignettes/EfficientMaxEigenpair.Rmd | 3 - vignettes/EfficientMaxEigenpair.html | 2 18 files changed, 109 insertions(+), 71 deletions(-)
More information about EfficientMaxEigenpair at CRAN
Permanent link
Title: Distributed-Lag Linear Structural Equation Modelling
Description: Inference functionalities for distributed-lag linear structural equation models. Endpoint-constrained quadratic, quadratic decreasing and gamma lag shapes are available.
Author: Alessandro Magrini
Maintainer: Alessandro Magrini <alessandro.magrini@for.unipi.it>
Diff between dlsem versions 1.8 dated 2017-06-12 and 1.9 dated 2017-07-23
DESCRIPTION | 10 - MD5 | 32 +-- R/dlsem.r | 429 +++++++++++++++++++++++++++++-------------- build/vignette.rds |binary inst/doc/dlsem_vignette.R | 60 ++++-- inst/doc/dlsem_vignette.Rnw | 233 +++++++++++++---------- inst/doc/dlsem_vignette.pdf |binary man/auto.lagPlot.Rd | 3 man/causalEff.Rd | 6 man/dlsem-package.Rd | 27 ++ man/dlsem.Rd | 71 ++++--- man/edgeCoeff.Rd | 3 man/isIndep.Rd | 3 man/lagPlot.Rd | 3 man/makePrediction.Rd | 26 +- man/modelFit.Rd |binary vignettes/dlsem_vignette.Rnw | 233 +++++++++++++---------- 17 files changed, 717 insertions(+), 422 deletions(-)
Title: Handling Taxonomic Lists
Description: Handling taxonomic lists through objects of class 'taxlist'.
This package provides functions to import species lists from 'Turboveg'
(<https://www.synbiosys.alterra.nl/turboveg>) and the possibility to create
backups from resulting R-objects.
Also quick displays are implemented in the summary-methods.
Author: Miguel Alvarez <kamapu78@gmail.com>
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between taxlist versions 0.1.0 dated 2017-06-14 and 0.1.1 dated 2017-07-23
taxlist-0.1.0/taxlist/tests/extras/buildvignette.R |only taxlist-0.1.1/taxlist/DESCRIPTION | 20 ++++++++-------- taxlist-0.1.1/taxlist/MD5 | 20 +++++++++++----- taxlist-0.1.1/taxlist/R/df2taxlist.R | 16 ++++++++++-- taxlist-0.1.1/taxlist/R/subset.R | 13 ++++++++-- taxlist-0.1.1/taxlist/build |only taxlist-0.1.1/taxlist/inst/ChangeLog | 10 ++++++++ taxlist-0.1.1/taxlist/inst/doc |only taxlist-0.1.1/taxlist/man/subset.Rd | 10 +++++++- taxlist-0.1.1/taxlist/tests/extras/0_before_building.R |only taxlist-0.1.1/taxlist/tests/extras/building_vignettes.R |only taxlist-0.1.1/taxlist/vignettes |only 12 files changed, 67 insertions(+), 22 deletions(-)
Title: Weighted Generalized Estimating Equations and Model Selection
Description: Weighted generalized estimating equations (WGEE) is an extension of generalized linear models to longitudinal clustered data by incorporating the correlation within-cluster when data is missing at random (MAR). The parameters in mean, scale correlation structures are estimated based on quasi-likelihood. Multiple model selection criterion are provided for selection of mean model and working correlation structure based on WGEE/GEE.
Author: Cong Xu <congxu17@gmail.com>, Zheng Li <zheng.li@outlook.com>,
Ming Wang <mwang@phs.psu.edu>
Maintainer: Zheng Li <zheng.li@outlook.com>
Diff between wgeesel versions 1.3 dated 2017-05-25 and 1.4 dated 2017-07-23
DESCRIPTION | 8 ++--- MD5 | 44 ++++++++++++++-------------- NAMESPACE | 5 ++- R/MLIC.gee.R | 44 +++++++++++++++------------- R/MQIC.gee.R | 10 +++++- R/QIC.gee.R | 8 ++++- R/QICW.gee.R | 28 +++++++++++------- R/RJ.gee.R | 29 +++++++++++------- R/RJ2.gee.R | 31 ++++++++++++-------- R/WRsquare.gee.R | 11 +++---- R/wgee.R | 74 +++++++++++++++++++++++++++++++++--------------- R/ylag.R | 5 ++- man/MLIC.gee.Rd | 55 +++++++---------------------------- man/MQIC.gee.Rd | 35 ++++++---------------- man/QIC.gee.Rd | 33 ++++++--------------- man/QICW.gee.Rd | 34 +++++----------------- man/RJ.gee.Rd | 29 ++++-------------- man/RJ2.gee.Rd | 30 ++++--------------- man/WRsquare.Rd | 32 +++----------------- man/wgee.Rd | 16 ++++++---- man/wgeesel-internal.Rd | 2 + man/wgeesel-package.Rd | 12 +------ man/ylag.Rd | 16 +++++----- 23 files changed, 267 insertions(+), 324 deletions(-)
Title: Fetch Economic and Financial Time Series Data from Public
Sources
Description: Download economic and financial time series from public sources,
including the St Louis Fed's FRED system, Yahoo Finance, the US Bureau of Labor Statistics,
the US Energy Information Administration, the World Bank, Eurostat, the European Central Bank,
the Bank of England, the UK's Office of National Statistics, Deutsche Bundesbank, and INSEE.
Author: Abiel Reinhart <abielr@gmail.com>
Maintainer: Abiel Reinhart <abielr@gmail.com>
Diff between pdfetch versions 0.2.1 dated 2017-04-19 and 0.2.2 dated 2017-07-23
DESCRIPTION | 16 +- MD5 | 32 ++--- NEWS | 7 + R/pdfetch.R | 240 ++++++++++++++++++++++++-------------------- man/pdfetch.Rd | 2 man/pdfetch_BLS.Rd | 1 man/pdfetch_BOE.Rd | 1 man/pdfetch_BUNDESBANK.Rd | 1 man/pdfetch_ECB.Rd | 1 man/pdfetch_EIA.Rd | 1 man/pdfetch_EUROSTAT.Rd | 1 man/pdfetch_EUROSTAT_DSD.Rd | 1 man/pdfetch_FRED.Rd | 1 man/pdfetch_INSEE.Rd | 1 man/pdfetch_ONS.Rd | 1 man/pdfetch_WB.Rd | 1 man/pdfetch_YAHOO.Rd | 6 - 17 files changed, 173 insertions(+), 141 deletions(-)
Title: Hidden State Speciation and Extinction
Description: Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.
Author: Jeremy Beaulieu [aut, cre],
Brian O'Meara [aut]
Maintainer: Jeremy Beaulieu <jbeaulieu@nimbios.org>
Diff between hisse versions 1.8.2 dated 2017-04-04 and 1.8.4 dated 2017-07-23
DESCRIPTION | 14 MD5 | 58 +- NAMESPACE | 5 R/getModelAveTipRates.R |only R/higeosse.R |only R/hisse.R | 54 +- R/hisseNull4.R | 23 R/plotHisse.R | 60 +- R/summarizeHisse.R |only R/supportRegion.R | 2 R/transMat.R | 32 - R/transMatHiGeoSSE.R |only build/vignette.rds |binary inst/CITATION |only inst/doc/hisse-fisse-type1-vignette.R |only inst/doc/hisse-fisse-type1-vignette.Rmd |only inst/doc/hisse-fisse-type1-vignette.html |only inst/doc/hisse-vignette.R | 10 inst/doc/hisse-vignette.Rmd | 22 inst/doc/hisse-vignette.html | 701 +++++++++++++++++--------- man/hisse.Rd | 8 man/hisseNull4.Rd | 8 man/marginRecon.Rd | 2 man/modelAveRates.Rd |only man/plotHisse.Rd | 2 man/simToPhylo.Rd | 2 man/simulateHisse.Rd | 2 man/supportRegion.Rd | 2 src/canonical_geosse-ext-derivs.c |only src/higeosse-ext-derivs.c |only src/registerDynamicSymbol.c | 26 tests/testthat/test_likelihood.R | 53 + vignettes/May2017_CID4_added_setsummaries.csv |only vignettes/hisse-fisse-type1-vignette.Rmd |only vignettes/hisse-vignette.Rmd | 20 vignettes/setCAQTipRatios.Rsave |only vignettes/setKXHTipRatios.Rsave |only vignettes/setMEVTipRatios.Rsave |only 38 files changed, 731 insertions(+), 375 deletions(-)