Sun, 20 Aug 2017

New package sure with initial version 0.1.2
Package: sure
Type: Package
Title: Surrogate Residuals for Ordinal and General Regression Models
Description: An implementation of the surrogate approach to residuals and diagnostics for ordinal and general regression models; for details, see Liu and Zhang (2017) <doi:10.1080/01621459.2017.1292915>. These residuals can be used to construct standard residual plots for model diagnostics (e.g., residual-vs-fitted value plots, residual-vs-covariate plots, Q-Q plots, etc.). The package also provides an 'autoplot' function for producing standard diagnostic plots using 'ggplot2' graphics. The package currently supports cumulative link models from packages 'MASS', 'ordinal', 'rms', and 'VGAM'. Support for binary regression models using the standard 'glm' function is also available.
Version: 0.1.2
Authors@R: c( person("Brandon", "Greenwell", email = "greenwell.brandon@gmail.com", role = c("aut", "cre")), person("Andrew", "McCarthy", email = "andrew.mccarthy@theperducogroup.com", role = c("aut")), person("Brad", "Boehmke", email = "bradleyboehmke@gmail.com", role = c("aut")), person("Dungang", "Liu", email = "dungang.liu@uc.edu", role = c("ctb")) )
Depends: R (>= 3.1)
Imports: ggplot2 (>= 2.2.1), goftest, gridExtra, stats
Suggests: MASS, ordinal, rms, testthat, VGAM
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-08-20 21:09:48 UTC; greenweb
Author: Brandon Greenwell [aut, cre], Andrew McCarthy [aut], Brad Boehmke [aut], Dungang Liu [ctb]
Maintainer: Brandon Greenwell <greenwell.brandon@gmail.com>
Repository: CRAN
Date/Publication: 2017-08-20 22:20:00 UTC

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New package komadown with initial version 0.1.0
Package: komadown
Title: R Markdown Templates for the 'KOMA-Script' Classes
Version: 0.1.0
Authors@R: person("Johan", "Larsson", email = "johanlarsson@outlook.com", role = c("aut", "cre"))
Description: R Markdown templates based on the 'KOMA-Script' classes for LaTeX, additionally offering cross-referencing via the 'bookdown' package.
Depends: R (>= 3.3.3)
License: GPL-3
Encoding: UTF-8
Imports: bookdown, rmarkdown, knitr
LazyData: true
RoxygenNote: 6.0.1
URL: https://github.com/jolars/komadown
BugReports: https://github.com/jolars/komadown/issues
Suggests: testthat, covr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2017-08-20 19:51:05 UTC; johan
Author: Johan Larsson [aut, cre]
Maintainer: Johan Larsson <johanlarsson@outlook.com>
Repository: CRAN
Date/Publication: 2017-08-20 22:16:17 UTC

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New package blastula with initial version 0.1
Package: blastula
Title: Easily Send HTML Email Messages
Version: 0.1
Authors@R: person("Rich", "Iannone", email = "riannone@me.com", role = c("aut", "cre"))
Description: Compose and send out responsive HTML email messages that render perfectly across a range of email clients and device sizes. Messages are composed using 'Markdown' and a text interpolation system that allows for the injection of evaluated R code within the message body, footer, and subject line. Helper functions let the user insert embedded images, web link buttons, and 'ggplot2' plot objects into the message body. Messages can be sent through an 'SMTP' server or through the 'Mailgun' API service <http://mailgun.com/>.
Depends: R (>= 3.4.0)
License: MIT + file LICENSE
Imports: commonmark (>= 1.2), ggplot2 (>= 2.2.1), glue (>= 1.1.1), htmltools (>= 0.3.6), httr (>= 1.2.1), knitr (>= 1.16), magrittr (>= 1.5), mailR (>= 0.4.1), rJava (>= 0.9-8), stringr (>= 1.2.0)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: covr, testthat
NeedsCompilation: no
Packaged: 2017-08-20 22:21:10 UTC; riannone
Author: Rich Iannone [aut, cre]
Maintainer: Rich Iannone <riannone@me.com>
Repository: CRAN
Date/Publication: 2017-08-20 22:39:17 UTC

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Package corpus updated to version 0.9.1 with previous version 0.9.0 dated 2017-08-19

Title: Text Corpus Analysis
Description: Text corpus data analysis, with full support for Unicode. Functions for reading data from newline-delimited JSON files, for normalizing and tokenizing text, for searching for term occurrences, and for computing term occurrence frequencies (including n-grams).
Author: Patrick O. Perry [aut, cre], Martin Porter and Richard Boulton [ctb, cph] (Snowball), Carlo Strapparava and Alessandro Valitutti [ctb, cph] (WordNet-Affect), Unicode, Inc. [ctb, cph] (Unicode Character Database)
Maintainer: Patrick O. Perry <pperry@stern.nyu.edu>

Diff between corpus versions 0.9.0 dated 2017-08-19 and 0.9.1 dated 2017-08-20

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More information about corpus at CRAN
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Package MOEADr updated to version 1.0.0 with previous version 0.2.1 dated 2017-03-20

Title: Component-Wise MOEA/D Implementation
Description: Modular implementation of Multiobjective Evolutionary Algorithms based on Decomposition (MOEA/D) [Zhang and Li (2007), <DOI:10.1109/TEVC.2007.892759>] for quick assembling and testing of new algorithmic components, as well as easy replication of published MOEA/D proposals.
Author: Felipe Campelo [aut, cre], Lucas Batista [com], Claus Aranha [aut]
Maintainer: Felipe Campelo <fcampelo@ufmg.br>

Diff between MOEADr versions 0.2.1 dated 2017-03-20 and 1.0.0 dated 2017-08-20

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Package RcppArmadillo updated to version 0.7.960.1.1 with previous version 0.7.960.1.0 dated 2017-08-17

Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that Armadillo requires a fairly recent compiler; for the g++ family at least version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppArmadillo versions 0.7.960.1.0 dated 2017-08-17 and 0.7.960.1.1 dated 2017-08-20

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Package zonator updated to version 0.5.8 with previous version 0.5.7 dated 2017-07-09

Title: Utilities for Zonation Spatial Conservation Prioritization Software
Description: Create new analysis setups and deal with results of Zonation conservation prioritization software <https://github.com/cbig/zonation-core>. This package uses data available in the 'zdat' (7.7 MB) package for building the vignettes.
Author: Joona Lehtomaki [aut, cre]
Maintainer: Joona Lehtomaki <joona.lehtomaki@gmail.com>

Diff between zonator versions 0.5.7 dated 2017-07-09 and 0.5.8 dated 2017-08-20

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Package stpm updated to version 1.6.8 with previous version 1.6.6 dated 2017-04-07

Title: Stochastic Process Model for Analysis of Longitudinal and Time-to-Event Outcomes
Description: Utilities to estimate parameters of the models with survival functions induced by stochastic covariates. Miscellaneous functions for data preparation and simulation are also provided. For more information, see: (i)"Stochastic model for analysis of longitudinal data on aging and mortality" by Yashin A. et al. (2007), Mathematical Biosciences, 208(2), 538-551, <DOI:10.1016/j.mbs.2006.11.006>; (ii) "Health decline, aging and mortality: how are they related?" by Yashin A. et al. (2007), Biogerontology 8(3), 291(302), <DOI:10.1007/s10522-006-9073-3>.
Author: I. Y. Zhbannikov, Liang He, K. G. Arbeev, A. I. Yashin.
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>

Diff between stpm versions 1.6.6 dated 2017-04-07 and 1.6.8 dated 2017-08-20

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New package happybiRthday with initial version 0.0.1
Package: happybiRthday
Type: Package
Title: Calculate Upcoming Birthday Dates of Github Repos
Version: 0.0.1
Depends: R (>= 3.3.3)
Imports: data.table, dplyr, gh, lubridate, tidyr
Suggests: knitr
Authors@R: person("Bohdan", "Khomtchouk", , "bohdan@stanford.edu", role = c("aut", "cre"))
Maintainer: Bohdan Khomtchouk <bohdan@stanford.edu>
Description: Software creation is a pretty big deal! A repository's initial commit date can be thought of as its birthday. Next time, drop in and wish a developer (any Github username) a happy birthday of their repo(s). Or maybe just toast to the upcoming anniversary of your own software! The software life cycle is too short not to celebrate!
URL: https://github.com/Bohdan-Khomtchouk/happybirthday
BugReports: https://github.com/Bohdan-Khomtchouk/happybirthday/issues
VignetteBuilder: knitr
License: MIT + file LICENSE
LazyData: TRUE
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-08-19 20:50:54 UTC; bohdankhomtchouk
Author: Bohdan Khomtchouk [aut, cre]
Repository: CRAN
Date/Publication: 2017-08-20 16:50:45 UTC

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New package GRCdata with initial version 1.0
Package: GRCdata
Type: Package
Title: Parameter Inference and Optimal Designs for Grouped and/or Right-Censored Count Data
Version: 1.0
Date: 2017-07-28
Author: Xin Guo <x.guo@polyu.edu.hk>, Qiang Fu <qiang.fu@ubc.ca>
Maintainer: Xin Guo <x.guo@polyu.edu.hk>
Depends: nloptr, cubature
Description: We implement two main functions. The first function uses a given grouped and/or right-censored grouping scheme and empirical data to infer parameters, and implements chi-square goodness-of-fit tests. The second function searches for the global optimal grouping scheme of grouped and/or right-censored count responses in surveys.
License: GPL (>= 3)
NeedsCompilation: no
Packaged: 2017-08-19 01:30:21 UTC; xin
Repository: CRAN
Date/Publication: 2017-08-20 16:47:38 UTC

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Package edgarWebR updated to version 0.1.1 with previous version 0.1.0 dated 2017-08-15

Title: SEC Filings Access
Description: A set of methods to access and parse live filing information from the U.S. Securities and Exchange Commission (SEC - <https://sec.gov>) including company and fund filings along with all associated metadata.
Author: Micah J Waldstein [aut, cre]
Maintainer: Micah J Waldstein <micah@waldste.in>

Diff between edgarWebR versions 0.1.0 dated 2017-08-15 and 0.1.1 dated 2017-08-20

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Package sjmisc updated to version 2.6.1 with previous version 2.6.0 dated 2017-08-05

Title: Data and Variable Transformation Functions
Description: Collection of miscellaneous utility functions, supporting data transformation tasks like recoding, dichotomizing or grouping variables, setting and replacing missing values. The data transformation functions also support labelled data, and all integrate seamlessly into a 'tidyverse'-workflow.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>

Diff between sjmisc versions 2.6.0 dated 2017-08-05 and 2.6.1 dated 2017-08-20

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Package SpatialExtremes updated to version 2.0-3 with previous version 2.0-2 dated 2015-06-11

Title: Modelling Spatial Extremes
Description: Tools for the statistical modelling of spatial extremes using max-stable processes, copula or Bayesian hierarchical models. More precisely, this package allows (conditional) simulations from various parametric max-stable models, analysis of the extremal spatial dependence, the fitting of such processes using composite likelihoods or least square (simple max-stable processes only), model checking and selection and prediction. Other approaches (althought not completely in agreement with the extreme value theory) are avaible such as the use of (spatial) copula and Bayesian hierarchical models assuming the so-called conditional assumptions. The latter approaches is handled through an (efficient) Gibbs sampler. Some key references: Davison et al. (2012) <doi:10.1214/11-STS376>, Padoan et al. (2010) <doi:10.1198/jasa.2009.tm08577>, Dombry et al. (2013) <doi:10.1093/biomet/ass067>.
Author: Mathieu Ribatet [aut, cre], Richard Singleton [ctb], R Core team [ctb]
Maintainer: Mathieu Ribatet <mathieu.ribatet@umontpellier.fr>

Diff between SpatialExtremes versions 2.0-2 dated 2015-06-11 and 2.0-3 dated 2017-08-20

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Package latentnet updated to version 2.8.0 with previous version 2.7.1 dated 2015-06-19

Title: Latent Position and Cluster Models for Statistical Networks
Description: Fit and simulate latent position and cluster models for statistical networks.
Author: Pavel N. Krivitsky [aut, cre], Mark S. Handcock [aut], Susan M. Shortreed [ctb], Jeremy Tantrum [ctb], Peter D. Hoff [ctb], Li Wang [ctb], Kirk Li [ctb], Jake Fisher [ctb], Jordan T. Bates [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>

Diff between latentnet versions 2.7.1 dated 2015-06-19 and 2.8.0 dated 2017-08-20

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Package httr updated to version 1.3.1 with previous version 1.3.0 dated 2017-08-16

Title: Tools for Working with URLs and HTTP
Description: Useful tools for working with HTTP organised by HTTP verbs (GET(), POST(), etc). Configuration functions make it easy to control additional request components (authenticate(), add_headers() and so on).
Author: Hadley Wickham [aut, cre], RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>

Diff between httr versions 1.3.0 dated 2017-08-16 and 1.3.1 dated 2017-08-20

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Package HSAUR2 updated to version 1.1-17 with previous version 1.1-16 dated 2017-06-21

Title: A Handbook of Statistical Analyses Using R (2nd Edition)
Description: Functions, data sets, analyses and examples from the second edition of the book ''A Handbook of Statistical Analyses Using R'' (Brian S. Everitt and Torsten Hothorn, Chapman & Hall/CRC, 2008). The first chapter of the book, which is entitled ''An Introduction to R'', is completely included in this package, for all other chapters, a vignette containing all data analyses is available. In addition, the package contains Sweave code for producing slides for selected chapters (see HSAUR2/inst/slides).
Author: Brian S. Everitt and Torsten Hothorn
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>

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Package geojsonio updated to version 0.4.0 with previous version 0.3.8 dated 2017-07-24

Title: Convert Data from and to 'GeoJSON' or 'TopoJSON'
Description: Convert data to 'GeoJSON' or 'TopoJSON' from various R classes, including vectors, lists, data frames, shape files, and spatial classes. 'geojsonio' does not aim to replace packages like 'sp', 'rgdal', 'rgeos', but rather aims to be a high level client to simplify conversions of data from and to 'GeoJSON' and 'TopoJSON'.
Author: Scott Chamberlain [aut, cre], Andy Teucher [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>

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More information about geojsonio at CRAN
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Package GeneralizedUmatrix updated to version 0.9.5 with previous version 0.9.4 dated 2017-05-18

Title: Credible Visualization for Two-Dimensional Projections of Data
Description: Projections from a high-dimensional data space onto a two-dimensional plane are used to detect structures, such as clusters, in multivariate data. The generalized Umatrix is able to visualize errors of these two-dimensional scatter plots by using a 3D topographic map.
Author: Michael Thrun, Alfred Ultsch
Maintainer: Michael Thrun <mthrun@mathematik.uni-marburg.de>

Diff between GeneralizedUmatrix versions 0.9.4 dated 2017-05-18 and 0.9.5 dated 2017-08-20

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Package ergm updated to version 3.8.0 with previous version 3.7.1 dated 2017-03-21

Title: Fit, Simulate and Diagnose Exponential-Family Models for Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis.
Author: Mark S. Handcock [aut], David R. Hunter [aut], Carter T. Butts [aut], Steven M. Goodreau [aut], Pavel N. Krivitsky [aut, cre], Martina Morris [aut], Li Wang [ctb], Kirk Li [ctb], Skye Bender-deMoll [ctb]
Maintainer: Pavel N. Krivitsky <pavel@uow.edu.au>

Diff between ergm versions 3.7.1 dated 2017-03-21 and 3.8.0 dated 2017-08-20

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More information about ergm at CRAN
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Package bookdown updated to version 0.5 with previous version 0.4 dated 2017-05-20

Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre], JJ Allaire [ctb], Albert Kim [ctb], Alessandro Samuel-Rosa [ctb], Andrzej Oles [ctb], Bastiaan Quast [ctb], Ben Marwick [ctb], Chester Ismay [ctb], Christophe Dervieux [ctb], Daniel Emaasit [ctb], David Shuman [ctb], Dean Attali [ctb], Drew Tyre [ctb], Frans van Dunne [ctb], Hadley Wickham [ctb], Jeff Allen [ctb], Jennifer Bryan [ctb], Jonathan McPhers [ctb], Junwen Huang [ctb], Kevin Cheung [ctb], Kevin Ushey [ctb], Kim Seonghyun [ctb], Kirill Muller [ctb], Luciano Selzer [ctb], Matthew Lincoln [ctb], Maximilian Held [ctb], Michael Sachs [ctb], Michal Bojanowski [ctb], Peter Hickey [ctb], Sahir Bhatnagar [ctb], Steve Simpson [ctb], Vincent Fulco [ctb], Yixuan Qiu [ctb], Zhuoer Dong [ctb], RStudio Inc [cph], Bartek Szopka [ctb] (The jQuery Highlight plugin), jQuery Foundation [cph] (jQuery library), jQuery contributors [ctb, cph] (jQuery library; authors listed in inst/resources/AUTHORS), MathQuill contributors [ctb] (The MathQuill library; authors listed in inst/resources/AUTHORS), FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>

Diff between bookdown versions 0.4 dated 2017-05-20 and 0.5 dated 2017-08-20

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New package TCIApathfinder with initial version 1.0.0
Package: TCIApathfinder
Title: Client for the Cancer Imaging Archive REST API
Version: 1.0.0
Authors@R: person("Pamela", "Russell", email = "pamela.russell@ucdenver.edu", role = c("aut", "cre"))
Description: A wrapper for The Cancer Imaging Archive's REST API. The Cancer Imaging Archive (TCIA) hosts de-identified medical images of cancer available for public download, as well as rich metadata for each image series. TCIA provides a REST API for programmatic access to the data. This package provides simple functions to access each API endpoint. For more information, see <https://github.com/pamelarussell/TCIApathfinder> and TCIA's website.
Depends: R (>= 3.3.2)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: testthat, httr, jsonlite
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-08-18 16:53:51 UTC; prussell
Author: Pamela Russell [aut, cre]
Maintainer: Pamela Russell <pamela.russell@ucdenver.edu>
Repository: CRAN
Date/Publication: 2017-08-20 12:23:53 UTC

More information about TCIApathfinder at CRAN
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Package mdmb updated to version 0.4-15 with previous version 0.3-11 dated 2017-07-12

Title: Model Based Treatment of Missing Data
Description: Contains model-based treatment of missing data for regression models with missing values in covariates or the dependent variable using maximum likelihood or Bayesian estimation. The regression model can be nonlinear (e.g., including interaction or quadratic effects). Multiple imputation can be also conducted.
Author: Alexander Robitzsch [aut, cre], Oliver Luedtke [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>

Diff between mdmb versions 0.3-11 dated 2017-07-12 and 0.4-15 dated 2017-08-20

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New package DatabionicSwarm with initial version 0.9.7
Package: DatabionicSwarm
Type: Package
Title: Swarm Intelligence for Self-Organized Clustering
Version: 0.9.7
Date: 2017-08-19
Author: Michael Thrun
Maintainer: Michael Thrun <m.thrun@gmx.net>
Description: Algorithms implementing populations of agents which interact with one another and sense their environment may exhibit emergent behavior such as self-organization and swarm intelligence. Here a swarm system, called databionic swarm (DBS), is introduced which is able to adapt itself to structures of high-dimensional data such as natural clusters characterized by distance and/or density based structures in the data space. The first module is the parameter-free projection method Pswarm, which exploits the concepts of self-organization and emergence, game theory, swarm intelligence and symmetry considerations. The second module is a parameter-free high-dimensional data visualization technique, which generates projected points on a topographic map with hypsometric colors based on the generalized U-matrix. The third module is the clustering method itself with non-critical parameters. The clustering can be verified by the visualization and vice versa. The term DBS refers to the method as a whole. DBS enables even a non-professional in the field of data mining to apply its algorithms for visualization and/or clustering to data sets with completely different structures drawn from diverse research fields.
License: GPL-3
Imports: Rcpp, deldir, GeneralizedUmatrix
Suggests: plotrix, geometry, sp, spdep, AdaptGauss, ABCanalysis, parallel, matrixStats, rgl, png, ProjectionBasedClustering
LinkingTo: Rcpp, RcppArmadillo
Depends: R (>= 3.0)
NeedsCompilation: yes
SystemRequirements: C++11
LazyLoad: yes
LazyData: TRUE
URL: https://www.uni-marburg.de/fb12/datenbionik/software-en
Encoding: UTF-8
Packaged: 2017-08-20 07:54:32 UTC; MT
Repository: CRAN
Date/Publication: 2017-08-20 11:13:36 UTC

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Package easycsv updated to version 1.0.5 with previous version 1.0.2 dated 2017-08-09

Title: Load Multiple 'csv' and 'txt' Tables
Description: Allows users to easily read multiple comma separated tables and create a data frame under the same name. Is able to read multiple comma separated tables from a local directory, a zip file or a zip file on a remote directory.
Author: Dror Bogin [aut, cre]
Maintainer: Dror Bogin <dror.bogin@gmail.com>

Diff between easycsv versions 1.0.2 dated 2017-08-09 and 1.0.5 dated 2017-08-20

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Package BNSP updated to version 2.0.0 with previous version 1.1.1 dated 2017-02-27

Title: Bayesian Non- And Semi-Parametric Model Fitting
Description: Markov chain Monte Carlo algorithms for non- and semi-parametric models.
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou <gpapageo@gmail.com>

Diff between BNSP versions 1.1.1 dated 2017-02-27 and 2.0.0 dated 2017-08-20

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Package sim1000G (with last version 1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-08-17 1.3

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