Title: Convert a SpatialLinesDataFrame Object to an 'igraph'-Class
Object
Description: Functions for converting network data from a
SpatialLinesDataFrame object to an 'igraph'-Class object.
Author: Binbin Lu
Maintainer: Binbin Lu <lubinbin220@gmail.com>
Diff between shp2graph versions 0-2 dated 2014-05-14 and 0-3 dated 2017-08-21
DESCRIPTION | 19 ++++----- MD5 | 41 ++++++++++---------- NAMESPACE | 5 ++ R/points2network.r | 24 +++++------ R/readshpnw.r | 10 ++-- man/Degree.list.Rd | 31 +++++++-------- man/Directed.Rd | 33 ++++++++-------- man/ME.simplification.Rd | 82 ++++++++++++++++++++++------------------ man/Nodes.coordinates.Rd | 10 ++-- man/ORN.Rd | 10 +--- man/PN.amalgamation.Rd | 96 ++++++++++++++++++++++++----------------------- man/Redef.functions.Rd | 21 +++++++--- man/SL.extraction.Rd | 68 ++++++++++++++++----------------- man/edgelist.Rd | 14 +++--- man/nel2igraph.Rd | 31 +++++++-------- man/nodelist.Rd | 16 +++---- man/nt.connect.Rd | 16 ++++--- man/points2network.Rd | 79 ++++++++++++++++++-------------------- man/ptsinnt.view.Rd | 42 +++++++++----------- man/readshpnw.Rd | 54 ++++++++++++-------------- src/Makevars |only src/Makevars.win |only src/init.c |only 23 files changed, 363 insertions(+), 339 deletions(-)
Title: Graph Matching Library for R
Description: This is a wrapper package for the graph matching library 'graphm'. The original 'graphm' C/C++ library can be found in <http://cbio.mines-paristech.fr/graphm/> . Latest version ( 0.52 ) of this library is slightly modified to fit 'Rcpp' usage and included in the source package. The development version of the package is also available at <https://github.com/adalisan/RGraphM> .
Author: Mikhail Zaslavskiy, Sancar Adali
Maintainer: Sancar Adali <sancar.adali@gmail.com>
Diff between RGraphM versions 0.1.8 dated 2017-08-09 and 0.1.9 dated 2017-08-21
DESCRIPTION | 6 - MD5 | 14 +- NAMESPACE | 6 - R/RcppExports.R | 14 +- man/graph_data.Rd | 56 +++++----- man/run_graph_match.Rd | 226 +++++++++++++++++++++--------------------- src/graphm/Makefile.in | 2 src/graphm/algorithm_path.cpp | 2 8 files changed, 165 insertions(+), 161 deletions(-)
Title: Standard Evaluation Interfaces for Common 'dplyr' Tasks
Description: The 'seplyr' (standard evaluation data.frame 'dplyr') package supplies
standard evaluation adapter methods for important common 'dplyr' methods
that currently have a non-standard programming interface. This allows
the analyst to use 'dplyr' to perform fundamental data transformation
steps such as arranging rows, grouping rows, aggregating selecting
columns without having to use learn the details of 'rlang'/'tidyeval'
non-standard evaluation and without continuing to rely on now
deprecated 'dplyr' "underscore verbs."
In addition the 'seplyr' package supplies several new "key operations
bound together" methods. These include 'group_summarize()' (which
combines grouping, arranging and calculation in an atomic unit),
'add_group_summaries()' (which joins grouped summaries into a 'data.frame'
in a well documented manner), and 'add_group_indices()' (which adds
per-group identifies to a 'data.frame' without depending on row-order).
Author: John Mount [aut, cre],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between seplyr versions 0.1.3 dated 2017-08-01 and 0.1.4 dated 2017-08-21
DESCRIPTION | 8 ++--- MD5 | 61 +++++++++++++++++++++------------------- NAMESPACE | 3 + NEWS.md | 6 +++ R/arrange_se.R | 2 - R/filter_se.R | 2 - R/lambda.R |only R/mutate_nse.R |only R/mutate_se.R | 12 ++++--- R/namedMapBuilder.R | 26 ++++++++++++++++- R/select_se.R | 12 +++++++ R/summarize_se.R | 2 - R/tally.R | 8 ++--- R/transmute_se.R | 2 - inst/doc/named_map_builder.R | 5 ++- inst/doc/named_map_builder.Rmd | 11 ++++++- inst/doc/named_map_builder.html | 13 +++++--- inst/doc/rename_se.html | 4 +- inst/doc/seplyr.html | 6 +-- inst/doc/using_seplyr.html | 6 +-- man/add_count_se.Rd | 2 - man/add_tally_se.Rd | 2 - man/arrange_se.Rd | 2 - man/count_se.Rd | 2 - man/expand_expr.Rd |only man/filter_se.Rd | 2 - man/makeFunction_se.Rd |only man/mutate_nse.Rd |only man/mutate_se.Rd | 11 +++---- man/named_map_builder.Rd | 6 +++ man/summarize_se.Rd | 2 - man/tally_se.Rd | 2 - man/transmute_se.Rd | 2 - vignettes/named_map_builder.Rmd | 11 ++++++- 34 files changed, 158 insertions(+), 75 deletions(-)
Title: Bayesian Non- And Semi-Parametric Model Fitting
Description: Markov chain Monte Carlo algorithms for non- and semi-parametric models: 1. Dirichlet process mixtures & 2. spike-slab for variable selection in mean/variance regression models.
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou <gpapageo@gmail.com>
Diff between BNSP versions 2.0.0 dated 2017-08-20 and 2.0.1 dated 2017-08-21
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- man/BNSP-package.Rd | 2 +- src/mvrmGAM.c | 18 +++++++----------- src/spec.BCM.h | 6 +++--- 5 files changed, 20 insertions(+), 24 deletions(-)
Title: Projection Based Clustering
Description: A clustering approach for every projection method based on the generalized U*-matrix visualization of a topographic map is made available here [Thrun/Ultsch,2017] <DOI:10.13140/RG.2.2.13124.53124>. The number of clusters and the cluster structure can be estimated by counting the valleys in a topographic map. If the number of clusters and the clustering method are chosen correctly, then the clusters will be well separated by mountains in the visualization. Most projection methods are wrappers for already available methods in R. However, the neighbor retrieval visualizer (NeRV) is based on C++ source code of the 'dredviz' software package and the Curvilinear Component Analysis (CCA) is translated from 'MATLAB' ('SOM Toolbox' 2.0) to R.
Author: Michael Thrun [aut, cre],
Florian Lerch [aut],
Felix Pape [aut],
Kristian Nybo [cph],
Jarkko Venna [cph]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between ProjectionBasedClustering versions 1.0.2 dated 2017-08-01 and 1.0.4 dated 2017-08-21
DESCRIPTION | 18 +++++++++++------- MD5 | 14 ++++++++------ NAMESPACE | 8 ++++++-- R/interactiveClustering.R |only data/DefaultColorSequence.rda |binary man/ProjectionBasedClustering-package.Rd | 30 ++++++++++++++++++++---------- man/ProjectionBasedClustering.Rd | 21 ++++++++++++--------- man/ShortestGraphPathsC.Rd | 5 ++++- man/interactiveClustering.Rd |only 9 files changed, 61 insertions(+), 35 deletions(-)
More information about ProjectionBasedClustering at CRAN
Permanent link
Title: Bayesian Inference for Image Boundaries
Description: Provides tools for carrying out a Bayesian analysis of image boundaries. Functions are provided
for both binary (Bernoulli) and continuous (Gaussian) images. Examples, along with an interactive shiny function
illustrate how to perform simulations, analyze custom data, and plot estimates and credible intervals.
Author: Nicholas Syring, Meng Li
Maintainer: Nicholas Syring <nasyrin@gmail.com>
Diff between BayesBD versions 1.1 dated 2016-12-14 and 1.2 dated 2017-08-21
BayesBD-1.1/BayesBD/data |only BayesBD-1.1/BayesBD/man/example_image_data.Rd |only BayesBD-1.1/BayesBD/man/pet_tumor1s_data.Rd |only BayesBD-1.1/BayesBD/man/pet_tumor2s_data.Rd |only BayesBD-1.1/BayesBD/src/Makevars |only BayesBD-1.2/BayesBD/DESCRIPTION | 10 BayesBD-1.2/BayesBD/MD5 | 50 ++-- BayesBD-1.2/BayesBD/NAMESPACE | 13 - BayesBD-1.2/BayesBD/R/BayesBDshiny.R | 259 +++++++++++------------ BayesBD-1.2/BayesBD/R/RcppExports.R | 11 BayesBD-1.2/BayesBD/R/dsmError.R |only BayesBD-1.2/BayesBD/R/fitBinImage.R |only BayesBD-1.2/BayesBD/R/fitContImage.R |only BayesBD-1.2/BayesBD/R/hausdorffError.R |only BayesBD-1.2/BayesBD/R/lebesgueError.R |only BayesBD-1.2/BayesBD/R/par2obs.R | 2 BayesBD-1.2/BayesBD/R/parnormobs.R | 2 BayesBD-1.2/BayesBD/R/plotBD.R | 183 ++++++++++++---- BayesBD-1.2/BayesBD/R/rectToPolar.R |only BayesBD-1.2/BayesBD/man/BayesBD-package.Rd | 24 -- BayesBD-1.2/BayesBD/man/BayesBDbinary.Rd | 15 - BayesBD-1.2/BayesBD/man/BayesBDnormal.Rd | 14 - BayesBD-1.2/BayesBD/man/dsmError.Rd |only BayesBD-1.2/BayesBD/man/fitBinImage.Rd |only BayesBD-1.2/BayesBD/man/fitContImage.Rd |only BayesBD-1.2/BayesBD/man/hausdorffError.Rd |only BayesBD-1.2/BayesBD/man/lebesgueError.Rd |only BayesBD-1.2/BayesBD/man/plotBD.Rd | 35 +-- BayesBD-1.2/BayesBD/man/rectToPolar.Rd |only BayesBD-1.2/BayesBD/man/tum1.Rd |only BayesBD-1.2/BayesBD/man/tum2.Rd |only BayesBD-1.2/BayesBD/src/BayesBD_init.c |only BayesBD-1.2/BayesBD/src/Makevars.win | 1 BayesBD-1.2/BayesBD/src/RcppExports.cpp | 11 BayesBD-1.2/BayesBD/src/rcpparma_hello_world.cpp | 4 35 files changed, 355 insertions(+), 279 deletions(-)
Title: Interactive Graphs with R
Description: Creates interactive graphs with 'R'. It joins the data analysis power of R and the visualization libraries of JavaScript in one package.
Author: Carlos Prieto <cprietos@usal.es>,
David Barrios <metal@usal.es>
Maintainer: Carlos Prieto <cprietos@usal.es>
Diff between RJSplot versions 2.1 dated 2017-05-19 and 2.3 dated 2017-08-21
DESCRIPTION | 8 +- MD5 | 74 +++++++++++------------ R/barplot.R | 11 ++- R/boxplot.R | 11 ++- R/dendrogram.R | 11 ++- R/densityplot.R | 11 ++- R/heatmap.R | 13 ++-- R/manhattan.R | 11 ++- R/network.R | 50 ++++++++++++--- R/pie.R | 11 ++- R/scatterplot.R | 9 +- R/utils.R | 2 inst/www/barplot.js | 9 +- inst/www/boxplot.js | 31 ++++++++- inst/www/dendrogram.js | 21 +++--- inst/www/density.js | 6 + inst/www/heatmap.js | 39 ++++++++---- inst/www/hive.js | 18 +++-- inst/www/manhattan.js | 6 + inst/www/network.js | 157 +++++++++++++++++++++++++++++++++++++------------ inst/www/pie.js | 52 ++++++++++++++-- inst/www/plot.js | 8 +- inst/www/scatter3d.js | 56 +++++++++-------- inst/www/surface3d.js | 2 inst/www/symheatmap.js | 28 ++++---- inst/www/wordcloud.js | 6 - man/barplot_rjs.Rd | 3 man/boxplot_rjs.Rd | 3 man/dendrogram_rjs.Rd | 3 man/densityplot_rjs.Rd | 3 man/heatmap_rjs.Rd | 5 + man/hiveplot_rjs.Rd | 3 man/manhattan_rjs.Rd | 3 man/network_rjs.Rd | 12 ++- man/piechart_rjs.Rd | 3 man/scatterplot_rjs.Rd | 4 - man/symheatmap_rjs.Rd | 3 man/wordcloud_rjs.Rd | 2 38 files changed, 481 insertions(+), 227 deletions(-)
Title: R Interface to InfluxDB
Description: An R interface to the InfluxDB time series database <https://www.influxdata.com>. This package allows you to fetch and write time series data from/to an InfluxDB server. Additionally, handy wrappers for the Influx Query Language (IQL) to manage and explore a remote database are provided.
Author: Dominik Leutnant [aut, cre]
Maintainer: Dominik Leutnant <leutnant@fh-muenster.de>
Diff between influxdbr versions 0.12.0 dated 2017-07-13 and 0.13.0 dated 2017-08-21
DESCRIPTION | 8 MD5 | 55 NAMESPACE | 62 NEWS.md |only R/influxdb_authentication_and_authorization.R | 250 +-- R/influxdb_database_management.R | 404 ++--- R/influxdb_diagnostics.R | 98 - R/influxdb_json_parser.R | 534 +++---- R/influxdb_main.R | 1230 ++++++++--------- R/influxdb_schema_exploration.R | 308 ++-- R/influxdb_select.R | 150 +- R/influxdbr.R | 40 README.md | 486 +++--- man/influx_authentication_and_authorization_helpers.Rd | 114 - man/influx_connection.Rd | 104 - man/influx_database_management_helpers.Rd | 144 - man/influx_ping.Rd | 48 man/influx_post.Rd | 48 man/influx_query.Rd | 86 - man/influx_schema_exploration_helpers.Rd | 118 - man/influx_select.Rd | 102 - man/influx_write.Rd | 100 - man/influxdbr.Rd | 20 man/show_diagnostics.Rd | 40 man/show_stats.Rd | 50 tests/testthat.R | 8 tests/testthat/test_query.R | 252 +-- tests/testthat/test_schema_exploration.R | 80 - tests/testthat/test_write.R | 154 +- 29 files changed, 2570 insertions(+), 2523 deletions(-)
Title: Seasonal Adjustment by Frequency Analysis
Description: Decompose a time series into seasonal, trend and irregular components using transformations to amplitude-frequency domain.
Author: Francisco Parra <parra_fj@cantabria.es>
Maintainer: Francisco Parra <parra_fj@cantabria.es>
Diff between descomponer versions 1.3 dated 2017-04-24 and 1.4 dated 2017-08-21
descomponer-1.3/descomponer/vignettes/framed.sty |only descomponer-1.4/descomponer/DESCRIPTION | 8 ++++---- descomponer-1.4/descomponer/MD5 | 9 ++++----- descomponer-1.4/descomponer/build/vignette.rds |binary descomponer-1.4/descomponer/data/PIB.rda |binary descomponer-1.4/descomponer/inst/doc/descomponer_texto.pdf |binary 6 files changed, 8 insertions(+), 9 deletions(-)
Title: Bayesian Evaluation of Variant Involvement in Mendelian Disease
Description: A fast integrative genetic association test for rare diseases based on a model for disease status given allele counts at rare variant sites. Probability of association, mode of inheritance and probability of pathogenicity for individual variants are all inferred in a Bayesian framework - 'A Fast Association Test for Identifying Pathogenic Variants Involved in Rare Diseases', Greene et al 2017 <doi:10.1016/j.ajhg.2017.05.015>.
Author: Daniel Greene, Sylvia Richardson and Ernest Turro
Maintainer: Daniel Greene <dg333@cam.ac.uk>
Diff between BeviMed versions 5.1 dated 2017-07-03 and 5.3 dated 2017-08-21
BeviMed-5.1/BeviMed/src/BeviMed_init.c |only BeviMed-5.3/BeviMed/DESCRIPTION | 8 BeviMed-5.3/BeviMed/MD5 | 25 +- BeviMed-5.3/BeviMed/R/RcppExports.R | 2 BeviMed-5.3/BeviMed/R/convenience.R | 5 BeviMed-5.3/BeviMed/R/generics.R | 38 ++- BeviMed-5.3/BeviMed/build/vignette.rds |binary BeviMed-5.3/BeviMed/inst/CITATION | 5 BeviMed-5.3/BeviMed/inst/doc/Guide.Rnw | 37 ++- BeviMed-5.3/BeviMed/inst/doc/Guide.pdf |binary BeviMed-5.3/BeviMed/inst/doc/Intro.html | 332 +++++++++++++++++++++++--------- BeviMed-5.3/BeviMed/inst/doc/vcf.html | 258 +++++++++++++++++++----- BeviMed-5.3/BeviMed/src/RcppExports.cpp | 12 + BeviMed-5.3/BeviMed/vignettes/Guide.Rnw | 37 ++- 14 files changed, 543 insertions(+), 216 deletions(-)
Title: R Bayesian Evidence Synthesis Tools
Description: Tool-set to support Bayesian evidence synthesis.
This includes meta-analysis, (robust) prior derivation
from historical data, operating characteristics
and analysis (1 and 2 sample cases).
Author: Novartis Pharma AG [cph],
Sebastian Weber [aut, cre],
Beat Neuenschwander [ctb],
Heinz Schmidli [ctb],
Baldur Magnusson [ctb],
Yue Li [ctb],
Satrajit Roychoudhury [ctb]
Maintainer: Sebastian Weber <sebastian.weber@novartis.com>
Diff between RBesT versions 1.2-2 dated 2017-07-12 and 1.2-3 dated 2017-08-21
DESCRIPTION | 10 +- MD5 | 33 +++---- R/EM_plot.R | 19 ++-- R/forest_plot.R | 40 ++++----- R/mixplot.R | 13 +-- R/zzz.R | 1 inst/NEWS | 102 ++++++++++++----------- inst/doc/RBesT.pdf |binary inst/doc/customizing_plots.R | 7 - inst/doc/customizing_plots.Rmd | 7 - inst/doc/customizing_plots.html | 146 +++++++++++++++++----------------- inst/doc/introduction.html | 78 +++++++++--------- inst/doc/introduction_normal.html | 162 +++++++++++++++++++------------------- inst/doc/robustMAP.html | 91 ++++++++++----------- man/forest_plot.Rd | 4 man/plot.mix.Rd | 2 src/RcppExports.cpp |only vignettes/customizing_plots.Rmd | 7 - 18 files changed, 365 insertions(+), 357 deletions(-)
Title: Some Nonparametric CUSUM Tests for Change-Point Detection in
Possibly Multivariate Observations
Description: Provides nonparametric CUSUM tests for detecting changes
in possibly serially dependent univariate or multivariate
observations. Tests sensitive to changes in the expectation, the
variance, the covariance, the autocovariance, the distribution
function, Spearman's rho, Kendall's tau, Gini's mean difference, and
the copula are provided, as well as a test for detecting changes in
the distribution of independent block maxima (with environmental
studies in mind). The latest additions are a test sensitive to
changes in the autocopula and a combined test of stationarity
sensitive to changes in the distribution function and the
autocopula.
Author: Ivan Kojadinovic
Maintainer: Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>
Diff between npcp versions 0.1-6 dated 2015-07-24 and 0.1-7 dated 2017-08-21
npcp-0.1-6/npcp/R/tests.R |only npcp-0.1-6/npcp/man/cpTestBM.Rd |only npcp-0.1-6/npcp/man/cpTestCn.Rd |only npcp-0.1-6/npcp/man/cpTestFn.Rd |only npcp-0.1-6/npcp/man/cpTestRho.Rd |only npcp-0.1-6/npcp/man/cpTestU.Rd |only npcp-0.1-7/npcp/DESCRIPTION | 24 +++- npcp-0.1-7/npcp/MD5 | 36 +++--- npcp-0.1-7/npcp/NAMESPACE | 34 +++++- npcp-0.1-7/npcp/R/cptests.R |only npcp-0.1-7/npcp/R/lnopt.R | 81 +++++++-------- npcp-0.1-7/npcp/R/serialtests.R |only npcp-0.1-7/npcp/man/bOptEmpProc.Rd | 53 +++++++-- npcp-0.1-7/npcp/man/cpAutocop.Rd |only npcp-0.1-7/npcp/man/cpBlockMax.Rd |only npcp-0.1-7/npcp/man/cpCopula.Rd |only npcp-0.1-7/npcp/man/cpDist.Rd |only npcp-0.1-7/npcp/man/cpRho.Rd |only npcp-0.1-7/npcp/man/cpU.Rd |only npcp-0.1-7/npcp/man/stDistAutocop.Rd |only npcp-0.1-7/npcp/src/bmtest.c | 4 npcp-0.1-7/npcp/src/cdftest.c | 2 npcp-0.1-7/npcp/src/ectest.c | 186 ++++++++++++++++++++++++++++++++++- npcp-0.1-7/npcp/src/init.c |only npcp-0.1-7/npcp/src/meantest.c |only npcp-0.1-7/npcp/src/npcp.h |only npcp-0.1-7/npcp/src/set_utils.h | 2 npcp-0.1-7/npcp/src/utilities.h | 1 28 files changed, 335 insertions(+), 88 deletions(-)
Title: Testing and Plotting Procedures for Biostatistics
Description: Contains miscellaneous functions useful in biostatistics, mostly univariate and multivariate testing procedures with a special emphasis on permutation tests. Many functions intend to simplify user's life by shortening existing procedures or by implementing plotting functions that can be used with as much methods from different packages as possible.
Author: Maxime Hervé
Maintainer: Maxime Hervé <maxime.herve@univ-rennes1.fr>
Diff between RVAideMemoire versions 0.9-66 dated 2017-07-10 and 0.9-68 dated 2017-08-21
DESCRIPTION | 21 ++++++++++--------- MD5 | 46 +++++++++++++++++++++---------------------- NEWS | 3 ++ R/DIABLO.test.R | 2 - R/MVA.ident.R | 2 - R/MVA.test.R | 4 +-- R/pairwise.perm.manova.R | 9 ++++---- R/perm.anova.R | 2 - R/perm.bartlett.test.R | 2 - R/perm.t.test.R | 4 +-- R/perm.var.test.R | 2 - R/zzz.R | 2 - man/MVA.cor.Rd | 2 - man/MVA.corplot.Rd | 2 - man/MVA.scoreplot.Rd | 2 - man/MVA.scores.Rd | 2 - man/MVA.synt.Rd | 2 - man/MVA.test.Rd | 2 - man/RVAideMemoire-package.Rd | 10 ++++----- man/perm.anova.Rd | 2 - man/perm.bartlett.test.Rd | 2 - man/perm.cor.test.Rd | 2 - man/perm.t.test.Rd | 2 - man/perm.var.test.Rd | 2 - 24 files changed, 68 insertions(+), 63 deletions(-)
Title: Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Description: Provides functions for the Bayesian analysis of extreme value
models. The 'rust' package <https://cran.r-project.org/package=rust> is
used to simulate a random sample from the required posterior distribution.
The functionality of 'revdbayes' is similar to the 'evdbayes' package
<https://cran.r-project.org/package=evdbayes>, which uses Markov Chain
Monte Carlo ('MCMC') methods for posterior simulation. See the 'revdbayes'
website for more information, documentation and examples.
Author: Paul J. Northrop [aut, cre, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between revdbayes versions 1.2.0 dated 2017-07-14 and 1.2.1 dated 2017-08-21
DESCRIPTION | 8 MD5 | 52 - NEWS.md | 12 R/RcppExports.R | 214 ++--- R/informative_priors.R | 4 R/plot_evpred.R | 8 R/predictive.R | 84 +- R/priors.R | 30 R/revdbayes.R | 2 R/rposterior.R | 19 R/rposterior_rcpp.R | 25 R/sample_diagnostics.R | 22 R/zzz.R | 4 inst/doc/revdbayes-predictive-vignette.Rmd | 3 inst/doc/revdbayes-predictive-vignette.html | 11 inst/doc/revdbayes-using-rcpp-vignette.Rmd | 3 inst/doc/revdbayes-using-rcpp-vignette.html | 41 - inst/doc/revdbayes-vignette.Rmd | 3 inst/doc/revdbayes-vignette.html | 17 inst/include/revdbayes_RcppExports.h | 426 +++++------ man/predict.evpost.Rd | 8 man/rpost.Rd | 33 man/rpost_rcpp.Rd | 33 man/set_prior.Rd | 6 man/summary.evpost.Rd | 3 src/RcppExports.cpp | 1068 ++++++++++++++-------------- src/posteriors_and_priors.cpp | 4 27 files changed, 1114 insertions(+), 1029 deletions(-)
Title: Movement Data Visualization
Description: Tools to visualize movement data of any kind, e. g. by creating path animations from GPS point data.
Author: Jakob Schwalb-Willmann [aut, cre]
Maintainer: Jakob Schwalb-Willmann <movevis@schwalb-willmann.de>
Diff between moveVis versions 0.9.4 dated 2017-06-29 and 0.9.5 dated 2017-08-21
DESCRIPTION | 10 MD5 | 26 NAMESPACE | 11 NEWS | 20 R/animate_move.R | 1367 ++++++++++++++++++++++++++++++------------------- R/animate_raster.R | 489 +---------------- R/animate_stats.R | 59 -- R/get_imconvert.R | 23 R/pkgname.R | 17 README.md | 38 - man/animate_move.Rd | 139 +++- man/animate_raster.Rd | 44 + man/animate_stats.Rd | 53 - man/moveVis-package.Rd | 17 14 files changed, 1142 insertions(+), 1171 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. The latest
version of the package includes a native graphics device for creating
in-memory graphics or drawing onto images using pixel coordinates.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between magick versions 1.1 dated 2017-08-14 and 1.2 dated 2017-08-21
magick-1.1/magick/R/apply.R |only magick-1.1/magick/R/transformations.R |only magick-1.1/magick/man/apply.Rd |only magick-1.1/magick/man/edit.Rd |only magick-1.1/magick/man/image_ocr.Rd |only magick-1.1/magick/man/transformations.Rd |only magick-1.2/magick/DESCRIPTION | 8 magick-1.2/magick/MD5 | 75 ++- magick-1.2/magick/NAMESPACE | 5 magick-1.2/magick/NEWS | 11 magick-1.2/magick/R/RcppExports.R | 208 +++++---- magick-1.2/magick/R/analysis.R |only magick-1.2/magick/R/animation.R |only magick-1.2/magick/R/attributes.R |only magick-1.2/magick/R/base.R | 4 magick-1.2/magick/R/color.R |only magick-1.2/magick/R/composite.R | 48 +- magick-1.2/magick/R/device.R | 1 magick-1.2/magick/R/edit.R | 217 ++------- magick-1.2/magick/R/effects.R |only magick-1.2/magick/R/index.R |only magick-1.2/magick/R/ocr.R | 24 - magick-1.2/magick/R/paint.R |only magick-1.2/magick/R/transform.R |only magick-1.2/magick/R/utils.R | 2 magick-1.2/magick/inst/doc/intro.R | 4 magick-1.2/magick/inst/doc/intro.Rmd | 4 magick-1.2/magick/inst/doc/intro.html | 87 +-- magick-1.2/magick/man/analysis.Rd |only magick-1.2/magick/man/animation.Rd |only magick-1.2/magick/man/attributes.Rd |only magick-1.2/magick/man/color.Rd |only magick-1.2/magick/man/composite.Rd | 44 + magick-1.2/magick/man/device.Rd | 8 magick-1.2/magick/man/editing.Rd |only magick-1.2/magick/man/effects.Rd |only magick-1.2/magick/man/magick.Rd |only magick-1.2/magick/man/ocr.Rd |only magick-1.2/magick/man/painting.Rd |only magick-1.2/magick/man/transform.Rd |only magick-1.2/magick/src/Makevars.win | 6 magick-1.2/magick/src/RcppExports.cpp | 665 ++++++++++++++++-------------- magick-1.2/magick/src/animation.cpp |only magick-1.2/magick/src/attributes.cpp | 10 magick-1.2/magick/src/base.cpp | 5 magick-1.2/magick/src/color.cpp |only magick-1.2/magick/src/composite.cpp | 22 magick-1.2/magick/src/edit.cpp | 84 --- magick-1.2/magick/src/magick_types.h | 21 magick-1.2/magick/src/resize.cpp |only magick-1.2/magick/src/transformations.cpp | 189 +------- magick-1.2/magick/vignettes/intro.Rmd | 4 52 files changed, 851 insertions(+), 905 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible method for
statistical inference of a broad class of time series and other data. KFAS
(Helske 2017) <doi:10.18637/jss.v078.i10> includes fast functions for
Kalman filtering, smoothing, forecasting, and simulation of multivariate
exponential family state space models, with observations from Gaussian,
Poisson, binomial, negative binomial, and gamma distributions.
Author: Jouni Helske <jouni.helske@iki.fi>
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.2.8 dated 2017-06-08 and 1.2.9 dated 2017-08-21
ChangeLog | 5 +++++ DESCRIPTION | 17 +++++++++-------- MD5 | 16 ++++++++-------- R/SSMcustom.R | 2 +- R/SSMcycle.R | 2 +- R/SSMregression.R | 2 +- R/SSMseasonal.R | 2 +- R/SSMtrend.R | 2 +- inst/doc/KFAS.pdf |binary 9 files changed, 27 insertions(+), 21 deletions(-)
Title: Determining and Evaluating High-Risk Zones
Description: Functions for determining and evaluating high-risk zones and
simulating and thinning point process data, as described in 'Determining
high risk zones using point process methodology - Realization by building
an R package' Seibold (2012) <http://highriskzone.r-forge.r-project.org/Bachelorarbeit.pdf>
and 'Determining high-risk zones for unexploded World War II bombs by using point
process methodology', Mahling et al. (2013) <doi:10.1111/j.1467-9876.2012.01055.x>.
Author: Heidi Seibold <Heidi.Seibold@uzh.ch>, Monia Mahling
<monia.mahling@stat.uni-muenchen.de>, Sebastian Linne
<Sebastian.Linne@campus.lmu.de>, Felix Guenther
<felix.guenther@stat.uni-muenchen.de>
Maintainer: Felix Guenther <felix.guenther@stat.uni-muenchen.de>
Diff between highriskzone versions 1.3-1 dated 2016-03-11 and 1.4-1 dated 2017-08-21
DESCRIPTION | 30 +- MD5 | 113 ++++--- NAMESPACE | 85 +++-- R/det_hrz_eval_ar.R |only R/det_puffer.R |only R/dethrz.R | 475 ++++++++++++++++---------------- R/dethrz_restr.R | 458 +++++++++++++++++-------------- R/dethrzbase.R | 555 +++++++++++++++++++++----------------- R/est_intens_spde.R | 208 +++++++------- R/estintens.R | 97 +++--- R/estintens_weight.R | 95 +++--- R/evalmethod.R | 474 ++++++++++++++++---------------- R/genericbootcorr.R | 164 +++++------ R/genericevalhrz.R | 188 ++++++------ R/generichrz.R | 210 +++++++------- R/highriskzone-package.R | 78 ++--- R/simulationbase.R | 458 +++++++++++++++---------------- data/craterA.RData |binary data/craterB.RData |binary man/bootcor.Rd | 185 ++++++------ man/bootcor_restr.Rd | 273 +++++++++--------- man/bootcorr.Rd | 185 ++++++------ man/check_det_hrz_input.Rd | 96 +++--- man/check_det_hrz_restr_input.Rd |only man/craterA.Rd | 31 +- man/craterB.Rd | 31 +- man/det_alpha.Rd | 51 +-- man/det_alpha_eval_ar.Rd |only man/det_area.Rd | 57 +-- man/det_area_hole.Rd |only man/det_guard_width.Rd |only man/det_hrz.Rd | 304 ++++++++++---------- man/det_hrz_eval_ar.Rd |only man/det_hrz_restr.Rd | 257 ++++++++--------- man/det_nnarea.Rd | 51 +-- man/det_nsintens.Rd | 53 +-- man/det_nsintens_restr.Rd | 57 +-- man/det_radius.Rd | 59 +--- man/det_threshold.Rd | 57 +-- man/det_threshold_eval_ar.Rd |only man/det_thresholdfromarea.Rd | 61 ++-- man/det_thresholdfromarea_rest.Rd |only man/est_intens.Rd | 77 ++--- man/est_intens_spde.Rd | 91 +++--- man/est_intens_weight.Rd | 76 ++--- man/eval_hrz.Rd | 107 +++---- man/eval_method.Rd | 281 +++++++++---------- man/highriskzone-package.Rd | 93 +++--- man/plot.bootcorr.Rd | 47 +-- man/plot.highriskzone.Rd | 81 ++--- man/plot.hrzeval.Rd | 107 +++---- man/print.bootcorr.Rd | 47 +-- man/print.highriskzone.Rd | 47 +-- man/print.hrzeval.Rd | 47 +-- man/read_pppdata.Rd | 83 ++--- man/sim_intens.Rd | 51 +-- man/sim_nsppp.Rd | 148 +++++----- man/sim_nsprocess.Rd | 75 ++--- man/summary.bootcorr.Rd | 47 +-- man/summary.highriskzone.Rd | 47 +-- man/summary.hrzeval.Rd | 47 +-- man/thin.Rd | 57 +-- 62 files changed, 3665 insertions(+), 3487 deletions(-)
Title: Fast Hierarchical Clustering Routines for R and Python
Description: This is a two-in-one package which provides interfaces to
both R and Python. It implements fast hierarchical, agglomerative
clustering routines. Part of the functionality is designed as drop-in
replacement for existing routines: linkage() in the SciPy package
'scipy.cluster.hierarchy', hclust() in R's 'stats' package, and the
'flashClust' package. It provides the same functionality with the
benefit of a much faster implementation. Moreover, there are
memory-saving routines for clustering of vector data, which go beyond
what the existing packages provide. For information on how to install
the Python files, see the file INSTALL in the source distribution.
Author: Daniel Müllner [aut, cph, cre]
Maintainer: Daniel Müllner <daniel@danifold.net>
Diff between fastcluster versions 1.1.23 dated 2017-08-21 and 1.1.24 dated 2017-08-21
DESCRIPTION | 13 ++++--- INSTALL | 5 +-- LICENSE | 4 +- MD5 | 36 +++++++++++----------- NEWS | 13 ++++++- R/fastcluster.R | 9 +++-- README | 5 +-- inst/doc/fastcluster.Rtex | 16 ++++++++- inst/doc/fastcluster.pdf |binary src/fastcluster.cpp | 5 +-- src/fastcluster_R.cpp | 62 +++++++++++++++++++++++++++----------- src/python/fastcluster.py | 7 ++-- src/python/fastcluster_python.cpp | 5 +-- src/python/setup.py | 11 ++---- src/python/tests/nantest.py | 6 ++- src/python/tests/test.py | 6 ++- src/python/tests/vectortest.py | 6 ++- tests/test_fastcluster.R | 5 +-- vignettes/fastcluster.Rtex | 16 ++++++++- 19 files changed, 154 insertions(+), 76 deletions(-)
Title: Importing and Analysing Snp and Silicodart Data Generated by
Genome-Wide Restriction Fragment Analysis
Description: Functions are provided that facilitate the import and analysis of
snp and silicodart (presence/absence) data. The main focus is on data generated
by DarT (Diversity Arrays Technology). However, once SNP or related fragment
presence/absence data from any source is imported into a genlight object many
of the functions can be used. Functions are available for input and output of
SNP and silicodart data, for reporting on and filtering on various criteria
(e.g. CallRate, Heterozygosity, Reproducibility, maximum allele frequency).
Advanced filtering is based on Linkage Disequilibrium and HWE. Other functions
are available for visualization after PCoA, or to facilitate transfer of data
between genlight/genind objects and newhybrids, related, phylip packages etc.
Author: Bernd Gruber [aut, cre],
Arthur Georges [aut],
Peter J. Unmack [ctb],
Oliver Berry [ctb]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>
Diff between dartR versions 0.91 dated 2017-08-15 and 0.93 dated 2017-08-21
DESCRIPTION | 6 ++-- MD5 | 18 ++++++------- R/gi2gl.R | 5 ++- R/gl.pcoa.r | 5 ++- inst/doc/IntroTutorial_dartR.R | 9 ++++-- inst/doc/IntroTutorial_dartR.Rmd | 49 +++++++++++++++++++++----------------- inst/doc/IntroTutorial_dartR.pdf |binary man/gi2gl.Rd | 4 ++- man/gl.pcoa.Rd | 4 ++- vignettes/IntroTutorial_dartR.Rmd | 49 +++++++++++++++++++++----------------- 10 files changed, 86 insertions(+), 63 deletions(-)
Title: Access Vegetation Databases and Treat Taxonomy
Description: Handling of vegetation data from different sources (
Turboveg <http://www.synbiosys.alterra.nl/turboveg/>;
the German national repository <http://www.vegetweb.de> and others.
Taxonomic harmonization (given appropriate taxonomic lists,
e.g. the German taxonomic standard list "GermanSL", <http://germansl.infinitenature.org>).
Author: Florian Jansen <florian.jansen@uni-rostock.de>
Maintainer: Florian Jansen <florian.jansen@uni-rostock.de>
Diff between vegdata versions 0.9 dated 2016-07-15 and 0.9.1 dated 2017-08-21
vegdata-0.9.1/vegdata/DESCRIPTION | 20 ++++--- vegdata-0.9.1/vegdata/MD5 | 68 ++++++++++++-------------- vegdata-0.9.1/vegdata/NAMESPACE | 3 - vegdata-0.9.1/vegdata/R/internal.r | 2 vegdata-0.9.1/vegdata/R/isc.r | 57 +++++++++++---------- vegdata-0.9.1/vegdata/R/reShape.veg.r | 11 +--- vegdata-0.9.1/vegdata/R/tax.child.r |only vegdata-0.9.1/vegdata/R/tax.combine.species.r |only vegdata-0.9.1/vegdata/R/tax.monotypic.r |only vegdata-0.9.1/vegdata/R/tax.names.r |only vegdata-0.9.1/vegdata/R/tax.r | 15 +++-- vegdata-0.9.1/vegdata/R/tax.reflist.r |only vegdata-0.9.1/vegdata/R/tax.val.r |only vegdata-0.9.1/vegdata/R/tv.home.r | 3 - vegdata-0.9.1/vegdata/R/tv.obs.r | 5 - vegdata-0.9.1/vegdata/R/tv.site.r | 2 vegdata-0.9.1/vegdata/R/tv.traits.r | 3 - vegdata-0.9.1/vegdata/R/tv.veg.r | 13 +--- vegdata-0.9.1/vegdata/R/tv.write.r | 50 +++++++++++-------- vegdata-0.9.1/vegdata/R/vw.vegetweb.r |only vegdata-0.9.1/vegdata/build/vignette.rds |binary vegdata-0.9.1/vegdata/inst/CITATION | 2 vegdata-0.9.1/vegdata/inst/ChangeLog | 4 + vegdata-0.9.1/vegdata/inst/doc/vegdata.R | 20 ++----- vegdata-0.9.1/vegdata/inst/doc/vegdata.Rnw | 37 +++++++------- vegdata-0.9.1/vegdata/inst/doc/vegdata.pdf |binary vegdata-0.9.1/vegdata/man/isc.Rd | 7 +- vegdata-0.9.1/vegdata/man/tax.Rd | 2 vegdata-0.9.1/vegdata/man/tax.val.Rd |only vegdata-0.9.1/vegdata/man/tv.traits.Rd | 9 --- vegdata-0.9.1/vegdata/man/tv.write.Rd | 3 - vegdata-0.9.1/vegdata/man/vw.vegetweb.Rd |only vegdata-0.9.1/vegdata/vignettes/vegdata.Rnw | 37 +++++++------- vegdata-0.9/vegdata/R/child.r |only vegdata-0.9/vegdata/R/comb.species.r |only vegdata-0.9/vegdata/R/monotypic.r |only vegdata-0.9/vegdata/R/reflist.r |only vegdata-0.9/vegdata/R/tax_add.r |only vegdata-0.9/vegdata/R/taxval.r |only vegdata-0.9/vegdata/R/vegetweb.r |only vegdata-0.9/vegdata/man/taxval.Rd |only vegdata-0.9/vegdata/man/vegetweb.Rd |only vegdata-0.9/vegdata/tests |only vegdata-0.9/vegdata/vignettes/googleVis.jpg |only 44 files changed, 197 insertions(+), 176 deletions(-)
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical
measures, which otherwise could only be calculated with additional
effort (like standard errors or root mean squared errors). Second,
these shortcut functions are generic (if appropriate), and can be
applied not only to vectors, but also to other objects as well
(e.g., the Coefficient of Variation can be computed for vectors,
linear models, or linear mixed models; the r2()-function returns
the r-squared value for 'lm', 'glm', 'merMod' or 'lme' objects).
The focus of most functions lies on summary statistics or fit
measures for regression models, including generalized linear
models and mixed effects models. However, some of the functions
also deal with other statistical measures, like Cronbach's Alpha,
Cramer's V, Phi etc.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.10.3 dated 2017-07-23 and 0.11.0 dated 2017-08-21
DESCRIPTION | 13 - MD5 | 49 ++-- NAMESPACE | 23 ++ NEWS | 12 + NEWS.md | 14 + R/HDI.R |only R/S3-methods.R | 56 +++++ R/boot_ci.R | 462 ++++++++++++++++++++++---------------------- R/check_model_assumptions.R | 2 R/converge_ok.R | 165 ++++++++------- R/cv_error.R | 160 +++++++-------- R/find_beta.R |only R/grpmean.R |only R/icc.R | 17 - R/predictive_accuracy.R | 2 R/typical.R | 132 ++++++------ README.md | 108 +++++----- build/partial.rdb |binary build/vignette.rds |only inst/doc |only man/boot_ci.Rd | 4 man/converge_ok.Rd | 15 + man/cv_error.Rd | 11 - man/find_beta.Rd |only man/grpmean.Rd |only man/hdi.Rd |only man/icc.Rd | 3 man/pred_accuracy.Rd | 3 vignettes |only 29 files changed, 696 insertions(+), 555 deletions(-)
Title: Analysis of Multivariate Data and Repeated Measures Designs
Description: Implemented are various tests for semi-parametric repeated measures
and general MANOVA designs that do neither assume multivariate normality nor
covariance homogeneity, i.e., the procedures are applicable for a wide range
of general multivariate factorial designs.
Author: Sarah Friedrich, Frank Konietschke, Markus Pauly
Maintainer: Sarah Friedrich <sarah.friedrich@uni-ulm.de>
Diff between MANOVA.RM versions 0.1.1 dated 2017-07-10 and 0.1.2 dated 2017-08-21
DESCRIPTION | 8 ++--- MD5 | 30 +++++++++++---------- R/Data.R | 40 ++++++++++++++++++++++++++--- R/MANOVA-function.R | 9 +++--- R/MANOVA_Statistics.R | 15 ++++++++++ R/MANOVAwide-function.R | 3 -- R/RM-function.R | 16 ++++++++++- build/vignette.rds |binary data/EEGwide.rda |only inst/doc/Introduction_to_MANOVA.RM.Rmd | 2 - inst/doc/Introduction_to_MANOVA.RM.html | 44 ++++++++++++++++---------------- man/EEG.Rd | 6 ++-- man/EEGwide.Rd |only man/MANOVA.Rd | 3 +- man/MANOVA.wide.Rd | 1 man/RM.Rd | 16 ++++++++++- vignettes/Introduction_to_MANOVA.RM.Rmd | 2 - 17 files changed, 133 insertions(+), 62 deletions(-)
Title: Graph/Network Visualization
Description: Graph and network visualization using tabular data.
Author: Knut Sveidqvist [aut, cph] (mermaid.js library in htmlwidgets/lib,
http://github.com/knsv/mermaid/),
Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Chris Pettitt [aut, cph] (dagre-d3.js library in htmlwidgets/lib,
http://github.com/cpettitt/dagre-d3),
Mike Daines [aut, cph] (viz.js library in htmlwidgets/lib,
http://github.com/mdaines/viz.js/),
Richard Iannone [aut, cre] (R interface)
Maintainer: Richard Iannone <riannone@me.com>
Diff between DiagrammeR versions 0.9.0 dated 2017-01-03 and 0.9.1 dated 2017-08-21
DiagrammeR-0.9.0/DiagrammeR/R/get_graph_diameter.R |only DiagrammeR-0.9.0/DiagrammeR/R/mk_cond.R |only DiagrammeR-0.9.0/DiagrammeR/R/select_last_edge.R |only DiagrammeR-0.9.0/DiagrammeR/R/select_last_node.R |only DiagrammeR-0.9.0/DiagrammeR/R/select_rev_edges_ws.R |only DiagrammeR-0.9.0/DiagrammeR/R/trigger_script.R |only DiagrammeR-0.9.0/DiagrammeR/R/vivagraph.R |only DiagrammeR-0.9.0/DiagrammeR/inst/extdata/Human_Interactome.sif |only DiagrammeR-0.9.0/DiagrammeR/inst/extdata/power_grid.graphml |only DiagrammeR-0.9.0/DiagrammeR/inst/htmlwidgets/lib/VivaGraphJS |only DiagrammeR-0.9.0/DiagrammeR/inst/htmlwidgets/vivagraph.js |only DiagrammeR-0.9.0/DiagrammeR/inst/htmlwidgets/vivagraph.yaml |only DiagrammeR-0.9.0/DiagrammeR/inst/img/graph_functions_1.png |only DiagrammeR-0.9.0/DiagrammeR/inst/img/graph_functions_2.png |only DiagrammeR-0.9.0/DiagrammeR/inst/img/graph_functions_3.png |only DiagrammeR-0.9.0/DiagrammeR/inst/img/graph_functions_4.png |only DiagrammeR-0.9.0/DiagrammeR/inst/img/graph_functions_5.png |only DiagrammeR-0.9.0/DiagrammeR/inst/img/graph_functions_6.png |only DiagrammeR-0.9.0/DiagrammeR/inst/img/graph_functions_7.png |only DiagrammeR-0.9.0/DiagrammeR/inst/img/graph_functions_8.png |only DiagrammeR-0.9.0/DiagrammeR/inst/img/graph_functions_9.png |only DiagrammeR-0.9.0/DiagrammeR/man/get_graph_diameter.Rd |only DiagrammeR-0.9.0/DiagrammeR/man/mk_cond.Rd |only DiagrammeR-0.9.0/DiagrammeR/man/select_last_edge.Rd |only DiagrammeR-0.9.0/DiagrammeR/man/select_last_node.Rd |only DiagrammeR-0.9.0/DiagrammeR/man/select_rev_edges_ws.Rd |only DiagrammeR-0.9.0/DiagrammeR/man/trigger_script.Rd |only DiagrammeR-0.9.0/DiagrammeR/man/vivagraph.Rd |only DiagrammeR-0.9.0/DiagrammeR/tests/testthat/test-import_graph.R |only DiagrammeR-0.9.1/DiagrammeR/DESCRIPTION | 34 DiagrammeR-0.9.1/DiagrammeR/MD5 | 928 +++-- DiagrammeR-0.9.1/DiagrammeR/NAMESPACE | 131 DiagrammeR-0.9.1/DiagrammeR/NEWS.md |only DiagrammeR-0.9.1/DiagrammeR/R/DiagrammeR.R | 24 DiagrammeR-0.9.1/DiagrammeR/R/add_balanced_tree.R | 55 DiagrammeR-0.9.1/DiagrammeR/R/add_cycle.R | 119 DiagrammeR-0.9.1/DiagrammeR/R/add_edge.R | 155 DiagrammeR-0.9.1/DiagrammeR/R/add_edge_clone.R |only DiagrammeR-0.9.1/DiagrammeR/R/add_edge_df.R | 9 DiagrammeR-0.9.1/DiagrammeR/R/add_edges_from_table.R | 55 DiagrammeR-0.9.1/DiagrammeR/R/add_edges_w_string.R | 49 DiagrammeR-0.9.1/DiagrammeR/R/add_forward_edges_ws.R |only DiagrammeR-0.9.1/DiagrammeR/R/add_full_graph.R | 72 DiagrammeR-0.9.1/DiagrammeR/R/add_global_graph_attrs.R | 20 DiagrammeR-0.9.1/DiagrammeR/R/add_gnp_graph.R |only DiagrammeR-0.9.1/DiagrammeR/R/add_graph_action.R |only DiagrammeR-0.9.1/DiagrammeR/R/add_n_node_clones.R |only DiagrammeR-0.9.1/DiagrammeR/R/add_n_nodes.R | 56 DiagrammeR-0.9.1/DiagrammeR/R/add_n_nodes_ws.R | 127 DiagrammeR-0.9.1/DiagrammeR/R/add_node.R | 69 DiagrammeR-0.9.1/DiagrammeR/R/add_node_df.R | 15 DiagrammeR-0.9.1/DiagrammeR/R/add_nodes_from_df_cols.R | 100 DiagrammeR-0.9.1/DiagrammeR/R/add_nodes_from_table.R | 54 DiagrammeR-0.9.1/DiagrammeR/R/add_pa_graph.R |only DiagrammeR-0.9.1/DiagrammeR/R/add_path.R | 124 DiagrammeR-0.9.1/DiagrammeR/R/add_prism.R | 130 DiagrammeR-0.9.1/DiagrammeR/R/add_reverse_edges_ws.R |only DiagrammeR-0.9.1/DiagrammeR/R/add_star.R | 126 DiagrammeR-0.9.1/DiagrammeR/R/add_to_series.R | 12 DiagrammeR-0.9.1/DiagrammeR/R/cache_edge_attrs.R | 54 DiagrammeR-0.9.1/DiagrammeR/R/cache_edge_attrs_ws.R | 47 DiagrammeR-0.9.1/DiagrammeR/R/cache_edge_count_ws.R | 34 DiagrammeR-0.9.1/DiagrammeR/R/cache_node_attrs.R | 45 DiagrammeR-0.9.1/DiagrammeR/R/cache_node_attrs_ws.R | 56 DiagrammeR-0.9.1/DiagrammeR/R/cache_node_count_ws.R | 29 DiagrammeR-0.9.1/DiagrammeR/R/clear_global_graph_attrs.R | 9 DiagrammeR-0.9.1/DiagrammeR/R/clear_selection.R | 2 DiagrammeR-0.9.1/DiagrammeR/R/colorize_edge_attrs.R | 69 DiagrammeR-0.9.1/DiagrammeR/R/colorize_node_attrs.R | 88 DiagrammeR-0.9.1/DiagrammeR/R/combine_edfs.R | 2 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DiagrammeR-0.9.1/DiagrammeR/man/add_nodes_from_df_cols.Rd | 53 DiagrammeR-0.9.1/DiagrammeR/man/add_nodes_from_table.Rd | 31 DiagrammeR-0.9.1/DiagrammeR/man/add_pa_graph.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/add_path.Rd | 55 DiagrammeR-0.9.1/DiagrammeR/man/add_prism.Rd | 62 DiagrammeR-0.9.1/DiagrammeR/man/add_reverse_edges_ws.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/add_star.Rd | 58 DiagrammeR-0.9.1/DiagrammeR/man/add_to_series.Rd | 9 DiagrammeR-0.9.1/DiagrammeR/man/cache_edge_attrs.Rd | 50 DiagrammeR-0.9.1/DiagrammeR/man/cache_edge_attrs_ws.Rd | 70 DiagrammeR-0.9.1/DiagrammeR/man/cache_edge_count_ws.Rd | 34 DiagrammeR-0.9.1/DiagrammeR/man/cache_node_attrs.Rd | 27 DiagrammeR-0.9.1/DiagrammeR/man/cache_node_attrs_ws.Rd | 40 DiagrammeR-0.9.1/DiagrammeR/man/cache_node_count_ws.Rd | 16 DiagrammeR-0.9.1/DiagrammeR/man/clear_global_graph_attrs.Rd | 8 DiagrammeR-0.9.1/DiagrammeR/man/clear_selection.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/colorize_edge_attrs.Rd | 35 DiagrammeR-0.9.1/DiagrammeR/man/colorize_node_attrs.Rd | 54 DiagrammeR-0.9.1/DiagrammeR/man/combine_edfs.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/combine_graphs.Rd | 10 DiagrammeR-0.9.1/DiagrammeR/man/combine_ndfs.Rd | 5 DiagrammeR-0.9.1/DiagrammeR/man/copy_edge_attrs.Rd | 44 DiagrammeR-0.9.1/DiagrammeR/man/copy_node_attrs.Rd | 32 DiagrammeR-0.9.1/DiagrammeR/man/count_asymmetric_node_pairs.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/count_automorphisms.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/count_mutual_node_pairs.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/count_unconnected_node_pairs.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/create_complement_graph.Rd | 12 DiagrammeR-0.9.1/DiagrammeR/man/create_edge_df.Rd | 9 DiagrammeR-0.9.1/DiagrammeR/man/create_graph.Rd | 9 DiagrammeR-0.9.1/DiagrammeR/man/create_node_df.Rd | 5 DiagrammeR-0.9.1/DiagrammeR/man/create_random_graph.Rd | 11 DiagrammeR-0.9.1/DiagrammeR/man/create_series.Rd | 18 DiagrammeR-0.9.1/DiagrammeR/man/create_subgraph_ws.Rd | 16 DiagrammeR-0.9.1/DiagrammeR/man/delete_edge.Rd | 65 DiagrammeR-0.9.1/DiagrammeR/man/delete_edges_ws.Rd | 7 DiagrammeR-0.9.1/DiagrammeR/man/delete_global_graph_attrs.Rd | 17 DiagrammeR-0.9.1/DiagrammeR/man/delete_graph_actions.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/delete_node.Rd | 3 DiagrammeR-0.9.1/DiagrammeR/man/delete_nodes_ws.Rd | 9 DiagrammeR-0.9.1/DiagrammeR/man/display_metagraph.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/do_bfs.Rd | 25 DiagrammeR-0.9.1/DiagrammeR/man/do_dfs.Rd | 27 DiagrammeR-0.9.1/DiagrammeR/man/drop_edge_attrs.Rd | 15 DiagrammeR-0.9.1/DiagrammeR/man/drop_node_attrs.Rd | 19 DiagrammeR-0.9.1/DiagrammeR/man/edge_count.Rd | 3 DiagrammeR-0.9.1/DiagrammeR/man/edge_info.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/edge_present.Rd | 10 DiagrammeR-0.9.1/DiagrammeR/man/edge_rel.Rd | 38 DiagrammeR-0.9.1/DiagrammeR/man/export_csv.Rd | 4 DiagrammeR-0.9.1/DiagrammeR/man/export_graph.Rd | 18 DiagrammeR-0.9.1/DiagrammeR/man/from_adj_matrix.Rd | 6 DiagrammeR-0.9.1/DiagrammeR/man/from_igraph.Rd | 14 DiagrammeR-0.9.1/DiagrammeR/man/generate_dot.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/get_adhesion.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_agg_degree_in.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_agg_degree_out.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_agg_degree_total.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_all_connected_nodes.Rd | 32 DiagrammeR-0.9.1/DiagrammeR/man/get_alpha_centrality.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_articulation_points.Rd | 21 DiagrammeR-0.9.1/DiagrammeR/man/get_attr_dfs.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_authority_centrality.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_betweenness.Rd | 40 DiagrammeR-0.9.1/DiagrammeR/man/get_bridging.Rd | 41 DiagrammeR-0.9.1/DiagrammeR/man/get_cache.Rd | 27 DiagrammeR-0.9.1/DiagrammeR/man/get_closeness.Rd | 41 DiagrammeR-0.9.1/DiagrammeR/man/get_closeness_vitality.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_cmty_edge_btwns.Rd | 33 DiagrammeR-0.9.1/DiagrammeR/man/get_cmty_fast_greedy.Rd | 31 DiagrammeR-0.9.1/DiagrammeR/man/get_cmty_l_eigenvec.Rd | 43 DiagrammeR-0.9.1/DiagrammeR/man/get_cmty_louvain.Rd | 32 DiagrammeR-0.9.1/DiagrammeR/man/get_cmty_walktrap.Rd | 41 DiagrammeR-0.9.1/DiagrammeR/man/get_common_nbrs.Rd | 18 DiagrammeR-0.9.1/DiagrammeR/man/get_constraint.Rd | 55 DiagrammeR-0.9.1/DiagrammeR/man/get_coreness.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_degree_distribution.Rd | 38 DiagrammeR-0.9.1/DiagrammeR/man/get_degree_histogram.Rd | 27 DiagrammeR-0.9.1/DiagrammeR/man/get_degree_in.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_degree_out.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_degree_total.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_dice_similarity.Rd | 18 DiagrammeR-0.9.1/DiagrammeR/man/get_eccentricity.Rd | 51 DiagrammeR-0.9.1/DiagrammeR/man/get_edge_attrs.Rd | 67 DiagrammeR-0.9.1/DiagrammeR/man/get_edge_attrs_ws.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_edge_count_w_multiedge.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_edge_df.Rd | 28 DiagrammeR-0.9.1/DiagrammeR/man/get_edge_ids.Rd | 10 DiagrammeR-0.9.1/DiagrammeR/man/get_edges.Rd | 15 DiagrammeR-0.9.1/DiagrammeR/man/get_eigen_centrality.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_girth.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_global_graph_attrs.Rd | 5 DiagrammeR-0.9.1/DiagrammeR/man/get_graph_actions.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_graph_from_series.Rd | 9 DiagrammeR-0.9.1/DiagrammeR/man/get_graph_log.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_graph_name.Rd | 6 DiagrammeR-0.9.1/DiagrammeR/man/get_graph_time.Rd | 4 DiagrammeR-0.9.1/DiagrammeR/man/get_jaccard_similarity.Rd | 16 DiagrammeR-0.9.1/DiagrammeR/man/get_last_edges_created.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_last_nodes_created.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_leverage_centrality.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_max_eccentricity.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_mean_distance.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_min_cut_between.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_min_eccentricity.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_min_spanning_tree.Rd | 35 DiagrammeR-0.9.1/DiagrammeR/man/get_multiedge_count.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_nbrs.Rd | 24 DiagrammeR-0.9.1/DiagrammeR/man/get_node_attrs.Rd | 36 DiagrammeR-0.9.1/DiagrammeR/man/get_node_attrs_ws.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_node_df.Rd | 29 DiagrammeR-0.9.1/DiagrammeR/man/get_node_ids.Rd | 10 DiagrammeR-0.9.1/DiagrammeR/man/get_non_nbrs.Rd | 6 DiagrammeR-0.9.1/DiagrammeR/man/get_pagerank.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_paths.Rd | 19 DiagrammeR-0.9.1/DiagrammeR/man/get_periphery.Rd | 16 DiagrammeR-0.9.1/DiagrammeR/man/get_predecessors.Rd | 13 DiagrammeR-0.9.1/DiagrammeR/man/get_radiality.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_reciprocity.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/get_s_connected_cmpts.Rd | 33 DiagrammeR-0.9.1/DiagrammeR/man/get_selection.Rd | 28 DiagrammeR-0.9.1/DiagrammeR/man/get_similar_nbrs.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/get_successors.Rd | 7 DiagrammeR-0.9.1/DiagrammeR/man/get_w_connected_cmpts.Rd | 11 DiagrammeR-0.9.1/DiagrammeR/man/grViz.Rd | 3 DiagrammeR-0.9.1/DiagrammeR/man/grVizOutput.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/graph_count.Rd | 13 DiagrammeR-0.9.1/DiagrammeR/man/graph_info.Rd | 5 DiagrammeR-0.9.1/DiagrammeR/man/image_icon.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/import_graph.Rd | 75 DiagrammeR-0.9.1/DiagrammeR/man/invert_selection.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/is_edge_loop.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/is_edge_multiple.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/is_edge_mutual.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/is_graph_connected.Rd | 37 DiagrammeR-0.9.1/DiagrammeR/man/is_graph_dag.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/is_graph_directed.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/is_graph_empty.Rd | 3 DiagrammeR-0.9.1/DiagrammeR/man/is_graph_simple.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/is_graph_weighted.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/is_property_graph.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/join_edge_attrs.Rd | 30 DiagrammeR-0.9.1/DiagrammeR/man/join_node_attrs.Rd | 38 DiagrammeR-0.9.1/DiagrammeR/man/layout_nodes_w_string.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/mermaid.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/mutate_edge_attrs.Rd | 107 DiagrammeR-0.9.1/DiagrammeR/man/mutate_node_attrs.Rd | 140 DiagrammeR-0.9.1/DiagrammeR/man/node_count.Rd | 9 DiagrammeR-0.9.1/DiagrammeR/man/node_info.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/node_present.Rd | 6 DiagrammeR-0.9.1/DiagrammeR/man/node_type.Rd | 24 DiagrammeR-0.9.1/DiagrammeR/man/nudge_node_positions_ws.Rd | 20 DiagrammeR-0.9.1/DiagrammeR/man/open_graph.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/pipe.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/print.dgr_graph.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/recode_edge_attrs.Rd | 14 DiagrammeR-0.9.1/DiagrammeR/man/recode_node_attrs.Rd | 54 DiagrammeR-0.9.1/DiagrammeR/man/remove_from_series.Rd | 13 DiagrammeR-0.9.1/DiagrammeR/man/rename_edge_attrs.Rd | 25 DiagrammeR-0.9.1/DiagrammeR/man/rename_node_attrs.Rd | 45 DiagrammeR-0.9.1/DiagrammeR/man/renderDiagrammeR.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/renderGrViz.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/render_graph.Rd | 90 DiagrammeR-0.9.1/DiagrammeR/man/render_graph_from_series.Rd | 13 DiagrammeR-0.9.1/DiagrammeR/man/reorder_graph_actions.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/replace_in_spec.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/man/rescale_edge_attrs.Rd | 55 DiagrammeR-0.9.1/DiagrammeR/man/rescale_node_attrs.Rd | 81 DiagrammeR-0.9.1/DiagrammeR/man/rev_edge_dir.Rd | 14 DiagrammeR-0.9.1/DiagrammeR/man/rev_edge_dir_ws.Rd | 16 DiagrammeR-0.9.1/DiagrammeR/man/save_graph.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/select_edges.Rd | 10 DiagrammeR-0.9.1/DiagrammeR/man/select_edges_by_edge_id.Rd | 27 DiagrammeR-0.9.1/DiagrammeR/man/select_edges_by_node_id.Rd | 15 DiagrammeR-0.9.1/DiagrammeR/man/select_last_edges_created.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/select_last_nodes_created.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/select_nodes.Rd | 7 DiagrammeR-0.9.1/DiagrammeR/man/select_nodes_by_degree.Rd | 40 DiagrammeR-0.9.1/DiagrammeR/man/select_nodes_by_id.Rd | 5 DiagrammeR-0.9.1/DiagrammeR/man/select_nodes_in_neighborhood.Rd | 29 DiagrammeR-0.9.1/DiagrammeR/man/series_info.Rd | 29 DiagrammeR-0.9.1/DiagrammeR/man/set_cache.Rd | 38 DiagrammeR-0.9.1/DiagrammeR/man/set_df_as_edge_attr.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/set_df_as_node_attr.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/set_edge_attrs.Rd | 36 DiagrammeR-0.9.1/DiagrammeR/man/set_edge_attrs_ws.Rd | 22 DiagrammeR-0.9.1/DiagrammeR/man/set_global_graph_attrs.Rd | 8 DiagrammeR-0.9.1/DiagrammeR/man/set_graph_name.Rd | 5 DiagrammeR-0.9.1/DiagrammeR/man/set_graph_time.Rd | 5 DiagrammeR-0.9.1/DiagrammeR/man/set_graph_undirected.Rd | 11 DiagrammeR-0.9.1/DiagrammeR/man/set_node_attr_to_display.Rd | 14 DiagrammeR-0.9.1/DiagrammeR/man/set_node_attr_w_fcn.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/set_node_attrs.Rd | 7 DiagrammeR-0.9.1/DiagrammeR/man/set_node_attrs_ws.Rd | 12 DiagrammeR-0.9.1/DiagrammeR/man/set_node_position.Rd | 25 DiagrammeR-0.9.1/DiagrammeR/man/subset_series.Rd | 15 DiagrammeR-0.9.1/DiagrammeR/man/to_igraph.Rd | 6 DiagrammeR-0.9.1/DiagrammeR/man/trav_both.Rd | 68 DiagrammeR-0.9.1/DiagrammeR/man/trav_both_edge.Rd | 78 DiagrammeR-0.9.1/DiagrammeR/man/trav_in.Rd | 74 DiagrammeR-0.9.1/DiagrammeR/man/trav_in_edge.Rd | 190 - DiagrammeR-0.9.1/DiagrammeR/man/trav_in_node.Rd | 95 DiagrammeR-0.9.1/DiagrammeR/man/trav_out.Rd | 97 DiagrammeR-0.9.1/DiagrammeR/man/trav_out_edge.Rd | 114 DiagrammeR-0.9.1/DiagrammeR/man/trav_out_node.Rd | 94 DiagrammeR-0.9.1/DiagrammeR/man/trav_reverse_edge.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/trigger_graph_actions.Rd |only DiagrammeR-0.9.1/DiagrammeR/man/visnetwork.Rd | 9 DiagrammeR-0.9.1/DiagrammeR/man/x11_hex.Rd | 1 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-add_forward_reverse_edges.R |only DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-add_graphs.R | 667 +++- DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-add_node_edge.R | 615 +++ DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-add_node_edge_df.R | 80 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-add_nodes_edges_from_table.R | 223 - DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-cache_attrs.R | 380 +- DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-colorize_nodes_edges.R | 139 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-combine_graphs.R | 46 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-copy_drop_mutate_recode_attrs.R | 765 ++-- DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-create_combine_edges.R | 58 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-create_combine_nodes.R | 37 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-create_graph.R | 136 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-create_random_graph.R | 53 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-create_subgraph.R | 23 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-datatable_compatability.R | 49 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-degree_total_in_out.R |only DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-delete_node_edge.R | 278 + DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-dfs_bfs.R | 105 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-edge_present.R | 2 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-edge_relationship.R | 75 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-get_aggregate_degree.R |only DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-get_cmty.R | 61 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-get_graph_metrics.R | 562 ++- DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-get_graph_properties.R |only DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-get_node_calculations.R | 703 ++++ DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-get_nodes_edges.R | 236 + DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-get_paths.R | 105 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-get_select_last_nodes_edges_created.R |only DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-graph_actions.R |only DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-graph_series.R | 279 + DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-graph_validation.R | 88 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-join_attrs.R | 77 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-mst.R | 8 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-neighbors.R | 53 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-node_edge_count.R | 137 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-node_edge_info.R | 92 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-node_present.R | 19 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-node_type.R | 37 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-predecessors_successors.R | 16 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-render_graph_series.R | 92 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-rescale_node_edge_attrs.R | 50 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-selections.R | 234 - DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-series_info.R | 155 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-set_get_graph_attrs.R | 120 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-set_get_node_edge_attrs.R | 407 +- DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-set_node_attr_to_display.R | 14 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-set_node_positions.R | 4 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-similarity_measures.R | 216 - DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-spectools.R | 6 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-transform_graph.R | 38 DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-traversals.R | 1607 ++++++---- DiagrammeR-0.9.1/DiagrammeR/tests/testthat/test-traversals_copying_attr_vals.R | 211 - 546 files changed, 16663 insertions(+), 7726 deletions(-)
Title: 'd3.js' Utilities for R
Description: Helper functions for using 'd3.js' in R.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Kent Russell [aut, cre] (R interface),
Gregor Aisch [aut, cph] (d3-jetpack creator,
https://github.com/gka/d3-jetpack),
Adam Pearce [aut] (core contributor to d3-jetpack),
Ben Ortiz [ctb]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between d3r versions 0.6.8 dated 2017-08-13 and 0.6.9 dated 2017-08-21
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 6 ++++++ R/hierarchy.R | 15 +++++++++------ 4 files changed, 23 insertions(+), 14 deletions(-)
Title: GUI for Cohen's and Fleiss' Kappa
Description: A Shiny front-end for the package 'irr' to compute Cohen's and Fleiss' Kappa.
Author: Frederic Santos
Maintainer: Frederic Santos <frederic.santos@u-bordeaux.fr>
Diff between KappaGUI versions 2.0.0 dated 2017-07-08 and 2.0.1 dated 2017-08-21
DESCRIPTION | 12 ++++----- MD5 | 10 +++---- inst/KappaShinyApp/ui.R | 5 +-- inst/KappaShinyApp/www/kappa.css | 50 ++++++++++++++++++++++++++++++++++----- man/KappaGUI-package.Rd | 8 +++--- man/StartKappa.Rd | 10 ++++--- 6 files changed, 67 insertions(+), 28 deletions(-)
Title: Fast Hierarchical Clustering Routines for R and Python
Description: This is a two-in-one package which provides interfaces to
both R and Python. It implements fast hierarchical, agglomerative
clustering routines. Part of the functionality is designed as drop-in
replacement for existing routines: linkage() in the SciPy package
'scipy.cluster.hierarchy', hclust() in R's 'stats' package, and the
'flashClust' package. It provides the same functionality with the
benefit of a much faster implementation. Moreover, there are
memory-saving routines for clustering of vector data, which go beyond
what the existing packages provide. For information on how to install
the Python files, see the file INSTALL in the source distribution.
Author: Daniel Müllner [aut, cph, cre]
Maintainer: Daniel Müllner <daniel@danifold.net>
Diff between fastcluster versions 1.1.22 dated 2016-12-09 and 1.1.23 dated 2017-08-21
DESCRIPTION | 10 ++-- MD5 | 24 +++++------ NEWS | 4 + build/vignette.rds |binary inst/doc/fastcluster.Rtex | 4 - inst/doc/fastcluster.pdf |binary src/fastcluster_R.cpp | 6 +- src/python/fastcluster.py | 10 ++-- src/python/setup.py | 86 +++++++++++++++++++++++++++++------------ src/python/tests/nantest.py | 2 src/python/tests/test.py | 2 src/python/tests/vectortest.py | 2 vignettes/fastcluster.Rtex | 4 - 13 files changed, 99 insertions(+), 55 deletions(-)
Title: Dynamic Modeling in R
Description: Intensive longitudinal data have become increasingly prevalent in
various scientific disciplines. Many such data sets are noisy, multivariate,
and multi-subject in nature. The change functions may also be continuous, or
continuous but interspersed with periods of discontinuities (i.e., showing
regime switches). The package 'dynr' (Dynamic Modeling in R) is an R package
that implements a set of computationally efficient algorithms for handling a
broad class of linear and nonlinear discrete- and continuous-time models with
regime-switching properties under the constraint of linear Gaussian measurement
functions. The discrete-time models can generally take on the form of a state-
space or difference equation model. The continuous-time models are generally
expressed as a set of ordinary or stochastic differential equations. All
estimation and computations are performed in C, but users are provided with the
option to specify the model of interest via a set of simple and easy-to-learn
model specification functions in R. Model fitting can be performed using single-
subject time series data or multiple-subject longitudinal data.
Author: Lu Ou [aut],
Michael D. Hunter [aut, cre],
Sy-Miin Chow [aut]
Maintainer: Michael D. Hunter <mhunter.ou@gmail.com>
Diff between dynr versions 0.1.11-2 dated 2017-06-16 and 0.1.11-8 dated 2017-08-21
DESCRIPTION | 10 MD5 | 18 NEWS | 14 R/dynrPlot.R | 1187 +++++++++++++++++++------------------- R/dynrVersion.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/InstallationForUsers.pdf |binary src/brekfis.c | 20 src/mainR.c | 14 10 files changed, 653 insertions(+), 612 deletions(-)
Title: Chemometrics with R - Multivariate Data Analysis in the Natural
Sciences and Life Sciences
Description: Functions and scripts used in the book "Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences" by Ron Wehrens, Springer (2011).
Author: Ron Wehrens
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
Diff between ChemometricsWithR versions 0.1.9 dated 2015-09-04 and 0.1.10 dated 2017-08-21
DESCRIPTION | 17 ++++++++++------- MD5 | 19 +++++++++++-------- NAMESPACE | 26 ++++++++++++++------------ R/MCR.R | 2 +- R/PCA.R | 6 ++++-- R/installChemometricsWithRData.R |only build |only man/ChemometricsWithR-package.Rd | 32 +++++++++++++++++++------------- man/MCR.Rd | 16 ++++++++-------- man/PCA.Rd | 4 +++- man/PCA.plot.Rd | 11 ++++++----- man/installChemometricsWithRData.Rd |only 12 files changed, 76 insertions(+), 57 deletions(-)
More information about ChemometricsWithR at CRAN
Permanent link
Title: Variance Estimation for Sample Surveys by the Ultimate Cluster
Method
Description: Generation of domain variables, linearization of several nonlinear population statistics (the ratio of two totals, weighted income percentile, relative median income ratio, at-risk-of-poverty rate, at-risk-of-poverty threshold, Gini coefficient, gender pay gap, the aggregate replacement ratio, the relative median income ratio, median income below at-risk-of-poverty gap, income quintile share ratio, relative median at-risk-of-poverty gap), computation of regression residuals in case of weight calibration, variance estimation of sample surveys by the ultimate cluster method (Hansen, Hurwitz and Madow,Theory, vol. I: Methods and Applications; vol. II: Theory. 1953, New York: John Wiley and Sons), variance estimation for longitudinal, cross-sectional measures and measures of change for single and multistage stage cluster sampling designs (Berger, Y. G., 2015, <doi:10.1111/rssa.12116>). Several other precision measures are derived - standard error, the coefficient of variation, the margin of error, confidence interval, design effect.
Author: Juris Breidaks [aut, cre],
Martins Liberts [aut],
Santa Ivanova [aut]
Maintainer: Juris Breidaks <Juris.Breidaks@csb.gov.lv>
Diff between vardpoor versions 0.9.6 dated 2017-07-08 and 0.9.8 dated 2017-08-21
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/domain.R | 4 ++-- R/vardomh.R | 17 ++++++++--------- R/varpoord.R | 2 +- man/vardannual.Rd | 2 ++ man/vardpoor-package.Rd | 4 ++-- 7 files changed, 25 insertions(+), 24 deletions(-)
Title: Calculates the Probability of Informed Trading (PIN)
Description: Estimates the probability of informed trading (PIN) initially introduced by Easley et. al. (1996) <doi:10.1111/j.1540-6261.1996.tb04074.x> . Contribution of the package is that it uses likelihood factorizations of Easley et. al. (2010) <doi:10.1017/S0022109010000074> (EHO factorization) and Lin and Ke (2011) <doi:10.1016/j.finmar.2011.03.001> (LK factorization). Moreover, the package uses different estimation algorithms. Specifically, the grid-search algorithm proposed by Yan and Zhang (2012) <doi:10.1016/j.jbankfin.2011.08.003> , hierarchical agglomerative clustering approach proposed by Gan et. al. (2015) <doi:10.1080/14697688.2015.1023336> and later extended by Ersan and Alici (2016) <doi:10.1016/j.intfin.2016.04.001> .
Author: Duygu Celik and Murat Tinic
Maintainer: Murat Tinic <tinic@bilkent.edu.tr>
Diff between InfoTrad versions 1.1 dated 2017-02-11 and 1.2 dated 2017-08-21
DESCRIPTION | 9 ++--- MD5 | 26 +++++++------- NAMESPACE | 7 +++- R/EA.R | 59 ++++++++++++++++++++------------- R/EHO.R | 94 +++++++++++++++++++++++++----------------------------- R/GAN.R | 84 ++++++++++++++++++++++++++++-------------------- R/LK.R | 92 ++++++++++++++++++++++++---------------------------- R/YZ.R | 55 +++++++++++++++++++++---------- build/partial.rdb |binary man/EA.Rd | 40 ++++++++++++++++------ man/EHO.Rd | 24 +------------ man/GAN.Rd | 33 ++++++++++++++---- man/LK.Rd | 19 ---------- man/YZ.Rd | 39 +++++++++++++++------- 14 files changed, 316 insertions(+), 265 deletions(-)