Title: Efficient Sampling for Gaussian Linear Regression with Arbitrary
Priors
Description: Efficient sampling for Gaussian linear regression with arbitrary priors.
Author: P. Richard Hahn, Jingyu He and Hedibert Lopes
Maintainer: Jingyu He <jingyu.he@chicagobooth.edu>
Diff between bayeslm versions 0.1.0 dated 2017-07-14 and 0.2.0 dated 2017-08-23
DESCRIPTION | 8 ++-- MD5 | 28 +++++++------- R/RcppExports.R | 20 +++++----- R/bayeslm.R | 9 +++- README.md | 13 ++++-- inst/include/bayeslm.h | 12 +++--- man/bayeslm.Rd | 7 ++- src/RcppExports.cpp | 9 +--- src/asymmetric.cpp | 22 +++++------ src/bayeslm.cpp | 32 ++++++++-------- src/blasso.cpp | 31 ++++++--------- src/horseshoe.cpp | 20 ++++------ src/nonlocal.cpp | 19 +++------ src/ridge.cpp | 25 +++++------- src/utilityFunctions.cpp | 92 ++++++++++++++++++++++++++++------------------- 15 files changed, 176 insertions(+), 171 deletions(-)
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 1.2.2 dated 2016-10-06 and 1.3.0 dated 2017-08-23
Cyclops-1.2.2/Cyclops/R/Abridge.R |only Cyclops-1.2.2/Cyclops/man/createAbridgePrior.Rd |only Cyclops-1.2.2/Cyclops/src/boost |only Cyclops-1.2.2/Cyclops/tests/testthat/test-Abridge.R |only Cyclops-1.3.0/Cyclops/DESCRIPTION | 12 Cyclops-1.3.0/Cyclops/MD5 | 195 +++----- Cyclops-1.3.0/Cyclops/NAMESPACE | 10 Cyclops-1.3.0/Cyclops/NEWS | 15 Cyclops-1.3.0/Cyclops/R/CrossValidationControl.R |only Cyclops-1.3.0/Cyclops/R/ModelFit.R | 146 ++++-- Cyclops-1.3.0/Cyclops/R/ParameterizedPrior.R |only Cyclops-1.3.0/Cyclops/R/Predict.R | 60 ++ Cyclops-1.3.0/Cyclops/R/RcppExports.R | 129 +++-- Cyclops-1.3.0/Cyclops/R/Survfit.R |only Cyclops-1.3.0/Cyclops/R/cyclops.R | 2 Cyclops-1.3.0/Cyclops/README.md | 2 Cyclops-1.3.0/Cyclops/man/Multitype.Rd | 1 Cyclops-1.3.0/Cyclops/man/aconfint.Rd | 1 Cyclops-1.3.0/Cyclops/man/appendSqlCyclopsData.Rd | 1 Cyclops-1.3.0/Cyclops/man/coef.cyclopsFit.Rd | 1 Cyclops-1.3.0/Cyclops/man/confint.cyclopsFit.Rd | 1 Cyclops-1.3.0/Cyclops/man/convertToCyclopsData.Rd | 4 Cyclops-1.3.0/Cyclops/man/convertToCyclopsVariance.Rd | 1 Cyclops-1.3.0/Cyclops/man/convertToGlmnetLambda.Rd | 1 Cyclops-1.3.0/Cyclops/man/coverage.Rd | 1 Cyclops-1.3.0/Cyclops/man/createAutoGridCrossValidationControl.Rd |only Cyclops-1.3.0/Cyclops/man/createControl.Rd | 1 Cyclops-1.3.0/Cyclops/man/createCyclopsData.Rd | 2 Cyclops-1.3.0/Cyclops/man/createParameterizedPrior.Rd |only Cyclops-1.3.0/Cyclops/man/createPrior.Rd | 2 Cyclops-1.3.0/Cyclops/man/cyclops.Rd | 1 Cyclops-1.3.0/Cyclops/man/finalizeSqlCyclopsData.Rd | 1 Cyclops-1.3.0/Cyclops/man/fitCyclopsModel.Rd | 2 Cyclops-1.3.0/Cyclops/man/fitCyclopsSimulation.Rd | 1 Cyclops-1.3.0/Cyclops/man/getCovariateIds.Rd | 1 Cyclops-1.3.0/Cyclops/man/getCovariateTypes.Rd | 1 Cyclops-1.3.0/Cyclops/man/getCrossValidationInfo.Rd |only Cyclops-1.3.0/Cyclops/man/getCyclopsPredictiveLogLikelihood.Rd | 1 Cyclops-1.3.0/Cyclops/man/getHyperParameter.Rd | 1 Cyclops-1.3.0/Cyclops/man/getNumberOfCovariates.Rd | 1 Cyclops-1.3.0/Cyclops/man/getNumberOfRows.Rd | 1 Cyclops-1.3.0/Cyclops/man/getNumberOfStrata.Rd | 1 Cyclops-1.3.0/Cyclops/man/getNumberOfTypes.Rd | 1 Cyclops-1.3.0/Cyclops/man/getSEs.Rd | 1 Cyclops-1.3.0/Cyclops/man/getUnivariableCorrelation.Rd | 1 Cyclops-1.3.0/Cyclops/man/isInitialized.Rd | 1 Cyclops-1.3.0/Cyclops/man/isSorted.Rd | 2 Cyclops-1.3.0/Cyclops/man/logLik.cyclopsFit.Rd | 1 Cyclops-1.3.0/Cyclops/man/meanLinearPredictor.Rd |only Cyclops-1.3.0/Cyclops/man/mse.Rd | 1 Cyclops-1.3.0/Cyclops/man/oxford.Rd | 1 Cyclops-1.3.0/Cyclops/man/plotCyclopsSimulationFit.Rd | 1 Cyclops-1.3.0/Cyclops/man/predict.cyclopsFit.Rd | 1 Cyclops-1.3.0/Cyclops/man/print.cyclopsData.Rd | 1 Cyclops-1.3.0/Cyclops/man/print.cyclopsFit.Rd | 1 Cyclops-1.3.0/Cyclops/man/printCyclopsRowIds.Rd | 1 Cyclops-1.3.0/Cyclops/man/printMatrixMarket.Rd |only Cyclops-1.3.0/Cyclops/man/readCyclopsData.Rd | 2 Cyclops-1.3.0/Cyclops/man/reduce.Rd | 1 Cyclops-1.3.0/Cyclops/man/simulateCyclopsData.Rd | 1 Cyclops-1.3.0/Cyclops/man/summary.cyclopsData.Rd | 1 Cyclops-1.3.0/Cyclops/man/survfit.cyclopsFit.Rd |only Cyclops-1.3.0/Cyclops/man/vcov.cyclopsFit.Rd | 1 Cyclops-1.3.0/Cyclops/src/Makevars | 2 Cyclops-1.3.0/Cyclops/src/RcppCyclopsInterface.cpp | 128 +++++ Cyclops-1.3.0/Cyclops/src/RcppCyclopsInterface.h | 14 Cyclops-1.3.0/Cyclops/src/RcppExports.cpp | 225 +++++++--- Cyclops-1.3.0/Cyclops/src/RcppModelData.cpp | 31 + Cyclops-1.3.0/Cyclops/src/cyclops/CompressedDataMatrix.cpp | 35 + Cyclops-1.3.0/Cyclops/src/cyclops/CompressedDataMatrix.h | 5 Cyclops-1.3.0/Cyclops/src/cyclops/CyclicCoordinateDescent.cpp | 35 + Cyclops-1.3.0/Cyclops/src/cyclops/CyclicCoordinateDescent.h | 48 -- Cyclops-1.3.0/Cyclops/src/cyclops/ModelData.cpp | 2 Cyclops-1.3.0/Cyclops/src/cyclops/drivers/AbstractCrossValidationDriver.cpp | 19 Cyclops-1.3.0/Cyclops/src/cyclops/drivers/AbstractCrossValidationDriver.h | 9 Cyclops-1.3.0/Cyclops/src/cyclops/drivers/AutoSearchCrossValidationDriver.cpp | 15 Cyclops-1.3.0/Cyclops/src/cyclops/drivers/AutoSearchCrossValidationDriver.h | 2 Cyclops-1.3.0/Cyclops/src/cyclops/drivers/GridSearchCrossValidationDriver.cpp | 6 Cyclops-1.3.0/Cyclops/src/cyclops/drivers/GridSearchCrossValidationDriver.h | 2 Cyclops-1.3.0/Cyclops/src/cyclops/drivers/HierarchyAutoSearchCrossValidationDriver.cpp | 12 Cyclops-1.3.0/Cyclops/src/cyclops/engine/ModelSpecifics.h | 1 Cyclops-1.3.0/Cyclops/src/cyclops/engine/ModelSpecifics.hpp | 45 +- Cyclops-1.3.0/Cyclops/src/cyclops/io/OutputWriter.h | 103 ++-- Cyclops-1.3.0/Cyclops/src/cyclops/priors/CovariatePrior.cpp | 1 Cyclops-1.3.0/Cyclops/src/cyclops/priors/CovariatePrior.h | 109 ++++ Cyclops-1.3.0/Cyclops/src/cyclops/priors/JointPrior.h | 17 Cyclops-1.3.0/Cyclops/src/cyclops/priors/NewCovariatePrior.h |only Cyclops-1.3.0/Cyclops/src/cyclops/priors/PriorFunction.h |only Cyclops-1.3.0/Cyclops/src/utils/HParSearch.cpp | 13 Cyclops-1.3.0/Cyclops/src/utils/HParSearch.h | 37 - Cyclops-1.3.0/Cyclops/tests/testthat/test-cv.R | 125 ++++- Cyclops-1.3.0/Cyclops/tests/testthat/test-parameterizedPriors.R |only Cyclops-1.3.0/Cyclops/tests/testthat/test-predict.R | 40 + Cyclops-1.3.0/Cyclops/tests/testthat/test-survfit.R |only 94 files changed, 1160 insertions(+), 541 deletions(-)
Title: CpG Filtering Method Based on Intra-Class Correlation
Coefficients
Description: Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.
Author: Jun Chen <Chen.Jun2@mayo.edu>
Maintainer: Jun Chen <chen.jun2@mayo.edu>
Diff between CpGFilter versions 1.0 dated 2014-11-05 and 1.1 dated 2017-08-23
CpGFilter-1.0/CpGFilter/R/B2M.R |only CpGFilter-1.0/CpGFilter/man/B2M.Rd |only CpGFilter-1.0/CpGFilter/man/CpGFilter-package.Rd |only CpGFilter-1.1/CpGFilter/DESCRIPTION | 17 ++--- CpGFilter-1.1/CpGFilter/MD5 | 11 +-- CpGFilter-1.1/CpGFilter/NAMESPACE | 5 + CpGFilter-1.1/CpGFilter/R/CpGFilterICC.R | 78 ++++++++++++++--------- CpGFilter-1.1/CpGFilter/man/CpGFilterICC.Rd | 12 ++- 8 files changed, 76 insertions(+), 47 deletions(-)
Title: Web Application Framework for R
Description: Makes it incredibly easy to build interactive web
applications with R. Automatic "reactive" binding between inputs and
outputs and extensive prebuilt widgets make it possible to build
beautiful, responsive, and powerful applications with minimal effort.
Author: Winston Chang [aut, cre],
Joe Cheng [aut],
JJ Allaire [aut],
Yihui Xie [aut],
Jonathan McPherson [aut],
RStudio [cph],
jQuery Foundation [cph] (jQuery library and jQuery UI library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/www/shared/jquery-AUTHORS.txt),
jQuery UI contributors [ctb, cph] (jQuery UI library; authors listed in
inst/www/shared/jqueryui/AUTHORS.txt),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Alexander Farkas [ctb, cph] (html5shiv library),
Scott Jehl [ctb, cph] (Respond.js library),
Stefan Petre [ctb, cph] (Bootstrap-datepicker library),
Andrew Rowls [ctb, cph] (Bootstrap-datepicker library),
Dave Gandy [ctb, cph] (Font-Awesome font),
Brian Reavis [ctb, cph] (selectize.js library),
Kristopher Michael Kowal [ctb, cph] (es5-shim library),
es5-shim contributors [ctb, cph] (es5-shim library),
Denis Ineshin [ctb, cph] (ion.rangeSlider library),
Sami Samhuri [ctb, cph] (Javascript strftime library),
SpryMedia Limited [ctb, cph] (DataTables library),
John Fraser [ctb, cph] (showdown.js library),
John Gruber [ctb, cph] (showdown.js library),
Ivan Sagalaev [ctb, cph] (highlight.js library),
R Core Team [ctb, cph] (tar implementation from R)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between shiny versions 1.0.4 dated 2017-08-14 and 1.0.5 dated 2017-08-23
DESCRIPTION | 6 ++--- MD5 | 34 +++++++++++++++--------------- NEWS.md | 14 ++++++++++++ R/bookmark-state.R | 2 - R/input-checkboxgroup.R | 3 +- R/input-radiobuttons.R | 34 +++++++++++++++--------------- R/middleware.R | 33 +++++++++++++++++++++++++++++ R/server.R | 2 - R/shiny.R | 11 +++++++++ R/update-input.R | 2 - inst/www/shared/shiny.js | 5 +++- inst/www/shared/shiny.js.map | 2 - inst/www/shared/shiny.min.js | 8 +++---- inst/www/shared/shiny.min.js.map | 2 - man/checkboxGroupInput.Rd | 3 +- man/radioButtons.Rd | 34 +++++++++++++++--------------- man/updateCheckboxGroupInput.Rd | 3 +- man/updateRadioButtons.Rd | 43 +++++++++++++++++++-------------------- 18 files changed, 151 insertions(+), 90 deletions(-)
Title: Some Nonparametric CUSUM Tests for Change-Point Detection in
Possibly Multivariate Observations
Description: Provides nonparametric CUSUM tests for detecting changes
in possibly serially dependent univariate or multivariate
observations. Tests sensitive to changes in the expectation, the
variance, the covariance, the autocovariance, the distribution
function, Spearman's rho, Kendall's tau, Gini's mean difference, and
the copula are provided, as well as a test for detecting changes in
the distribution of independent block maxima (with environmental
studies in mind). The latest additions are a test sensitive to
changes in the autocopula and a combined test of stationarity
sensitive to changes in the distribution function and the
autocopula.
Author: Ivan Kojadinovic
Maintainer: Ivan Kojadinovic <ivan.kojadinovic@univ-pau.fr>
Diff between npcp versions 0.1-7 dated 2017-08-21 and 0.1-9 dated 2017-08-23
npcp-0.1-7/npcp/src/zeroin.c |only npcp-0.1-9/npcp/DESCRIPTION | 8 ++-- npcp-0.1-9/npcp/MD5 | 15 +++---- npcp-0.1-9/npcp/man/stDistAutocop.Rd | 2 - npcp-0.1-9/npcp/src/ectest.c | 3 - npcp-0.1-9/npcp/src/init.c | 70 ++++++++++++++++++----------------- npcp-0.1-9/npcp/src/npcp.h | 9 ++++ npcp-0.1-9/npcp/src/set_utils.c | 62 +++++++++++++------------------ npcp-0.1-9/npcp/src/set_utils.h | 4 -- 9 files changed, 87 insertions(+), 86 deletions(-)
Title: Mediation Analysis of Causality under Confounding
Description: Performs causal mediation analysis under confounding or correlated errors. This package includes a single level mediation model, a two-level mediation model, and a three-level mediation model for data with hierarchical structures. Under the two/three-level mediation model, the correlation parameter is identifiable and is estimated based on a hierarchical-likelihood, a marginal-likelihood or a two-stage method. See Zhao, Y., & Luo, X. (2014), Estimating Mediation Effects under Correlated Errors with an Application to fMRI, <arXiv:1410.7217> for details.
Author: Yi Zhao <yi_zhao@alumni.brown.edu>, Xi Luo <xi.rossi.luo@gmail.com>
Maintainer: Yi Zhao <yi_zhao@alumni.brown.edu>
Diff between macc versions 1.0.0 dated 2016-11-03 and 1.0.1 dated 2017-08-23
DESCRIPTION | 14 +- MD5 | 34 +++---- R/cma.delta.lm.HL.R | 7 - R/cma.delta.lm.R | 36 ++++--- R/cma.h.R | 6 - R/cma.lm.R | 6 - R/cma.lm.h.R | 2 R/cma.lm.ts.R | 2 R/cma.mix.R | 6 - R/cma.uni.mix.R | 10 +- R/cma.uni.mix.hl.R | 161 ++++++++++++++++++--------------- R/cma.uni.plot.R | 14 +- R/macc-internal.R | 251 +++++++++++++++++++++++++--------------------------- R/macc.R | 8 - data/env.single.rda |binary data/env.three.rda |binary data/env.two.rda |binary man/macc-package.Rd | 8 - 18 files changed, 289 insertions(+), 276 deletions(-)
Title: Utilities for Delaying Function Execution
Description: Executes arbitrary R or C functions some time after the current
time, after the R execution stack has emptied.
Author: Joe Cheng [aut, cre],
RStudio [cph],
Marcus Geelnard [ctb, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/)
Maintainer: Joe Cheng <joe@rstudio.com>
Diff between later versions 0.3 dated 2017-06-25 and 0.4 dated 2017-08-23
later-0.3/later/src/timestamp_darwin.cpp |only later-0.4/later/DESCRIPTION | 6 +- later-0.4/later/MD5 | 34 +++++++------ later-0.4/later/NAMESPACE | 1 later-0.4/later/NEWS.md | 11 +++- later-0.4/later/R/RcppExports.R | 12 +++- later-0.4/later/R/later.R | 13 ++++- later-0.4/later/man/loop_empty.Rd |only later-0.4/later/src/RcppExports.cpp | 18 +++++-- later-0.4/later/src/callback_registry.h | 5 + later-0.4/later/src/init.c | 18 +++---- later-0.4/later/src/later.cpp | 17 ++++++ later-0.4/later/src/later.h | 5 + later-0.4/later/src/later_posix.cpp | 79 ++++++++++++++++++++++--------- later-0.4/later/src/optional.h | 5 + later-0.4/later/src/timer_posix.cpp |only later-0.4/later/src/timer_posix.h |only later-0.4/later/src/timestamp.h | 11 ++++ later-0.4/later/src/timestamp_unix.cpp | 42 ++++++++++------ later-0.4/later/src/timestamp_win32.cpp | 10 +++ 20 files changed, 213 insertions(+), 74 deletions(-)
Title: Incremental Calculation of Dynamic Time Warping
Description: Implements incremental calculation of the DTW (Dynamic Time Warping) distance of two vectors, which is specifically useful for life data streams. Further the calculation of the global cost matrix is implemented in C++ to be faster. The Sakoe Chiba band is also implemented. The calculation of DTW is less functional then the one of dtw(), however much faster. For details about DTW see the original paper "Dynamic programming algorithm optimization for spoken word recognition" by Sakoe and Chiba (1978) <DOI:10.1109/TASSP.1978.1163055>. Any feedback is highly appreciated!
Author: Maximilian Leodolter
Maintainer: Maximilian Leodolter <maximilian.leodolter@gmail.com>
Diff between IncDTW versions 0.1.2 dated 2017-08-23 and 0.1.3 dated 2017-08-23
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/Rfunctions.R | 10 +++++----- inst/doc/Incremental_Dynamic_Time_Warping.R | 2 +- inst/doc/Incremental_Dynamic_Time_Warping.Rmd | 2 +- inst/doc/Incremental_Dynamic_Time_Warping.html | 21 +++++++++++---------- vignettes/Incremental_Dynamic_Time_Warping.Rmd | 2 +- 7 files changed, 28 insertions(+), 27 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Education Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 1.9.1 dated 2017-07-25 and 1.10.1 dated 2017-08-23
DESCRIPTION | 16 ++++++------ MD5 | 20 +++++++++------ NAMESPACE | 3 ++ R/accuracy.r | 57 +++++++++++++++++++++++++++++++++------------ R/epsilonSquared.r |only R/freemanTheta.r |only R/nagelkerke.r | 2 - R/pairwisePercentileTest.r | 7 +++-- R/percentileTest.r | 19 +++++++-------- man/accuracy.Rd | 29 +++++++++++++++++++--- man/epsilonSquared.Rd |only man/freemanTheta.Rd |only man/nagelkerke.Rd | 2 - 13 files changed, 107 insertions(+), 48 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber [aut, cre],
Marco Smolla [aut],
Anne K Scharf [aut]
Maintainer: Bart Kranstauber <bart.kranstauber@ieu.uzh.ch>
Diff between move versions 3.0.0 dated 2017-08-22 and 3.0.1 dated 2017-08-23
move-3.0.0/move/tests/testthat/Rplots.pdf |only move-3.0.1/move/DESCRIPTION | 6 +++--- move-3.0.1/move/MD5 | 11 +++++------ move-3.0.1/move/inst/doc/browseMovebank.pdf |binary move-3.0.1/move/inst/doc/move.pdf |binary move-3.0.1/move/tests/test-all.R | 5 +---- move-3.0.1/move/tests/testthat/test.print.R | 3 ++- 7 files changed, 11 insertions(+), 14 deletions(-)
Title: PD-Clustering and Factor PD-Clustering
Description: Probabilistic distance clustering (PD-clustering) is an iterative, distribution free, probabilistic clustering method. PD-clustering assigns units to a cluster according to their probability of membership, under the constraint that the product of the probability and the distance of each point to any cluster centre is a constant. PD-clustering is a flexible method that can be used with non-spherical clusters, outliers, or noisy data. Facto PD-clustering (FPDC) is a recently proposed factor clustering method that involves a linear transformation of variables and a cluster optimizing the PD-clustering criterion. It works on high dimensional datasets.
Author: Cristina Tortora and Paul D. McNicholas
Maintainer: Cristina Tortora <grikris1@gmail.com>
Diff between FPDclustering versions 1.1 dated 2016-05-17 and 1.2 dated 2017-08-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Silh.R | 4 ++-- man/Silh.Rd | 4 ++-- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Convenient Functions for Ensemble Time Series Forecasts
Description: Convenient functions for ensemble forecasts in R combining
approaches from the 'forecast' package. Forecasts generated from auto.arima(), ets(),
thetam(), nnetar(), stlm(), and tbats() can be combined with equal weights, weights
based on in-sample errors, or CV weights. Cross validation for time series data
and user-supplied models and forecasting functions is also supported to evaluate model accuracy.
Author: David Shaub [aut, cre],
Peter Ellis [aut]
Maintainer: David Shaub <davidshaub@gmx.com>
Diff between forecastHybrid versions 1.0.8 dated 2017-07-12 and 1.1.9 dated 2017-08-23
DESCRIPTION | 14 ++-- MD5 | 34 +++++------ R/cvts.R | 38 ++++++------ R/forecast.hybridModel.R | 24 ++++++-- R/helper.R | 15 ++--- R/hybridModel.R | 61 +++++++++++++------- R/theta.R | 15 ++--- build/vignette.rds |binary inst/NEWS.md | 6 ++ inst/doc/forecastHybrid.Rmd | 2 inst/doc/forecastHybrid.html | 87 ++++++++++++++--------------- man/cvts.Rd | 16 ++--- tests/testthat/test-accuracy.r | 24 ++++---- tests/testthat/test-cvts.R | 47 ++++++++------- tests/testthat/test-forecast.hybridModel.R | 36 +++++++++--- tests/testthat/test-generics.R | 16 +++-- tests/testthat/test-hybridModel.R | 8 ++ tests/testthat/test-levels.R | 1 18 files changed, 259 insertions(+), 185 deletions(-)
More information about forecastHybrid at CRAN
Permanent link
Title: Performs Bayesian Variable Selection on the Covariates in a
Semi-Competing Risks Model
Description: Contains four functions used in the DIC-tau_g procedure. SCRSELECT() and SCRSELECTRUN() uses Stochastic Search Variable Selection to select important
covariates in the three hazard functions of a semi-competing risks model. These functions perform the Gibbs sampler for variable selection and a Metropolis-Hastings-Green sampler for the number of split points and parameters for the
three baseline hazard function. The function SCRSELECT() returns the posterior sample of all quantities sampled in the Gibbs sampler after a burn-in period to a desired
file location, while the function SCRSELECTRUN() returns posterior values of important quantities to the DIC-Tau_g procedure in a list.
The function DICTAUG() returns a list containing the DIC values for the unique models visited by the DIC-Tau_g grid search.
The function ReturnModel() uses SCRSELECTRUN() and DICTAUG() to return a summary of the posterior coefficient vectors for the optimal model along with saving this posterior sample to a desired path location.
Author: Andrew Chapple [aut, cre]
Maintainer: Andrew Chapple <Andrew.G.Chapple@rice.edu>
Diff between SCRSELECT versions 1.2-2 dated 2017-06-28 and 1.3-3 dated 2017-08-23
SCRSELECT-1.2-2/SCRSELECT/man/SCRSELECTRUN.Rd |only SCRSELECT-1.3-3/SCRSELECT/DESCRIPTION | 6 - SCRSELECT-1.3-3/SCRSELECT/MD5 | 14 +-- SCRSELECT-1.3-3/SCRSELECT/NAMESPACE | 2 SCRSELECT-1.3-3/SCRSELECT/R/DICTAUG.R | 104 +++++++++++++---------- SCRSELECT-1.3-3/SCRSELECT/R/ReturnModel.R | 26 ++++- SCRSELECT-1.3-3/SCRSELECT/R/SCRSELECT.R | 78 +++++++++-------- SCRSELECT-1.3-3/SCRSELECT/R/SCRSELECTRETURN.R | 94 +++++++++++--------- SCRSELECT-1.3-3/SCRSELECT/man/SCRSELECTRETURN.Rd |only 9 files changed, 189 insertions(+), 135 deletions(-)
Title: Hierarchical Multinomial Processing Tree Modeling
Description: User-friendly analysis of hierarchical multinomial processing tree (MPT)
models that are often used in cognitive psychology. Implements the latent-trait
MPT approach (Klauer, 2010) <DOI:10.1007/s11336-009-9141-0> and the beta-MPT
approach (Smith & Batchelder, 2010) <DOI:10.1016/j.jmp.2009.06.007> to model
heterogeneity of participants. MPT models are conveniently specified by an
.eqn-file as used by other MPT software and data are provided by a .csv-file
or directly in R. Models are either fitted by calling JAGS or by an MPT-tailored
Gibbs sampler in C++ (only for nonhierarchical and beta MPT models). Provides
tests of heterogeneity and MPT-tailored summaries and plotting functions.
Author: Daniel Heck [aut, cre],
Nina Arnold [aut, dtc],
Denis Arnold [aut],
Alexander Ly [ctb]
Maintainer: Daniel Heck <heck@uni-mannheim.de>
Diff between TreeBUGS versions 1.1.0 dated 2017-04-01 and 1.1.1 dated 2017-08-23
DESCRIPTION | 18 ++- MD5 | 86 +++++++-------- NAMESPACE | 3 NEWS | 6 + R/BF_Rao_Blackwell.R | 117 +++++++------------- R/BF_auxiliary.R | 39 +++--- R/BF_likelihoods.R | 35 ++---- R/BF_marginalMPT.R | 174 ++++++++++++++++--------------- R/CollectionOfInputProcessingFunctions.R | 7 + R/RcppExports.R | 6 - R/TreeBUGS-package.R | 6 - R/callingSampler.R | 39 ++---- R/correlationBayesMCMC.R | 3 R/fitBetaMPT.R | 4 R/fitBetaMPTcpp.R | 7 - R/fitModelCpp.R | 41 ++++--- R/fitSimpleMPT.R | 11 + R/genDataTrait.R | 4 R/plotConvergence.R | 72 +++++++++--- R/plotParameters.R | 68 +++++++++--- R/printMPT.R | 8 - R/priorPredictive.R | 12 -- R/readEQN.R | 25 ++-- R/transformedParPosthoc.R | 10 - inst/CITATION | 9 - inst/doc/TreeBUGS_1_intro.html | 6 - inst/doc/TreeBUGS_2_extended.html | 6 - man/BayesFactorMPT.Rd | 12 +- man/TreeBUGS-package.Rd | 2 man/betaMPT.Rd | 4 man/betaMPTcpp.Rd | 8 - man/genBetaMPT.Rd | 4 man/genMPT.Rd | 4 man/genTraitMPT.Rd | 4 man/marginalMPT.Rd | 30 ++--- man/plot.Rd | 2 man/plotParam.Rd | 16 ++ man/priorPredictive.Rd | 4 man/readEQN.Rd | 4 man/simpleMPT.Rd | 12 +- man/traitMPT.Rd | 4 man/withinSubjectEQN.Rd | 2 src/RcppExports.cpp | 6 - src/init.c | 23 +--- 44 files changed, 522 insertions(+), 441 deletions(-)
Title: Population Genetic Data Analysis Using Genepop
Description: Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.
Author: François Rousset [aut, cre, cph],
Jimmy Lopez [ctb],
Khalid Belkhir [ctb]
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between genepop versions 1.0 dated 2017-06-14 and 1.0.5 dated 2017-08-23
DESCRIPTION | 6 MD5 | 70 R/Genepop.R | 53 R/genepop_internals.R |only inst/NEWS.Rd |only inst/doc/GenepopS.Rmd | 10 inst/doc/GenepopS.pdf |binary inst/doc/GenepopS.tex | 22 inst/doc/all-menu-options.html | 303 +-- inst/doc/bibliography.html | 205 +- inst/doc/code-maintenance-credits-contact-etc-.html | 221 +- inst/doc/copyright.html | 205 +- inst/doc/evaluating-the-performance-of-inferences-for-isolation-by-distance.html | 205 +- inst/doc/installing-genepop-and-session-examples.html | 230 +- inst/doc/introduction.html | 30 inst/doc/libs/gitbook-2.6.7/css/plugin-bookdown.css | 195 +- inst/doc/libs/gitbook-2.6.7/css/plugin-fontsettings.css | 582 +++--- inst/doc/libs/gitbook-2.6.7/css/plugin-highlight.css | 852 +++++----- inst/doc/libs/gitbook-2.6.7/css/plugin-search.css | 55 inst/doc/libs/gitbook-2.6.7/css/style.css | 20 inst/doc/libs/gitbook-2.6.7/js/app.min.js | 12 inst/doc/libs/gitbook-2.6.7/js/jquery.highlight.js | 168 - inst/doc/libs/gitbook-2.6.7/js/lunr.js | 14 inst/doc/libs/gitbook-2.6.7/js/plugin-bookdown.js | 432 ++--- inst/doc/libs/gitbook-2.6.7/js/plugin-fontsettings.js | 302 +-- inst/doc/libs/gitbook-2.6.7/js/plugin-search.js | 424 ++-- inst/doc/libs/gitbook-2.6.7/js/plugin-sharing.js | 208 +- inst/doc/libs/jquery-2.2.3/jquery.min.js | 8 inst/doc/methods.html | 231 +- inst/doc/sec-settings.html | 207 +- inst/doc/the-input-file.html | 205 +- src/F_est.cpp | 2 src/GenepopS.cpp | 47 src/bootstrap.cpp | 4 src/genepop.cpp | 38 src/settings.cpp | 35 src/tools.cpp | 4 37 files changed, 2878 insertions(+), 2727 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-12-31 0.1
Title: Repeated Measures Correlation
Description: Compute the repeated measures correlation, a statistical technique
for determining the overall within-individual relationship among paired measures
assessed on two or more occasions, first introduced by Bland and Altman (1995).
Includes functions for diagnostics, p-value, effect size with confidence
interval including optional bootstrapping, as well as graphing. Also includes
several example datasets.
Author: Jonathan Z. Bakdash, Laura R. Marusich
Maintainer: Laura R. Marusich <laura.r.marusich.ctr@mail.mil>
Diff between rmcorr versions 0.1.0 dated 2016-08-29 and 0.2.0 dated 2017-08-23
rmcorr-0.1.0/rmcorr/inst/doc/Paper_figures.R |only rmcorr-0.1.0/rmcorr/inst/doc/Paper_figures.html |only rmcorr-0.1.0/rmcorr/inst/doc/Paper_figures.rmd |only rmcorr-0.1.0/rmcorr/vignettes/Paper_figures.rmd |only rmcorr-0.2.0/rmcorr/DESCRIPTION | 12 +- rmcorr-0.2.0/rmcorr/MD5 | 59 +++++----- rmcorr-0.2.0/rmcorr/R/data.R | 2 rmcorr-0.2.0/rmcorr/R/plot.rmc.R | 6 + rmcorr-0.2.0/rmcorr/R/rmcorr-package.R | 3 rmcorr-0.2.0/rmcorr/R/rmcorr.R | 12 +- rmcorr-0.2.0/rmcorr/build/partial.rdb |binary rmcorr-0.2.0/rmcorr/build/vignette.rds |binary rmcorr-0.2.0/rmcorr/inst/doc/Combined_paper_figures.R |only rmcorr-0.2.0/rmcorr/inst/doc/Combined_paper_figures.Rmd |only rmcorr-0.2.0/rmcorr/inst/doc/Combined_paper_figures.html |only rmcorr-0.2.0/rmcorr/man/bland1995.Rd | 1 rmcorr-0.2.0/rmcorr/man/gilden2010.Rd | 9 - rmcorr-0.2.0/rmcorr/man/plot.rmc.Rd | 1 rmcorr-0.2.0/rmcorr/man/print.rmc.Rd | 5 rmcorr-0.2.0/rmcorr/man/raz2005.Rd | 1 rmcorr-0.2.0/rmcorr/man/rmcorr-package.Rd | 6 - rmcorr-0.2.0/rmcorr/man/rmcorr.Rd | 1 rmcorr-0.2.0/rmcorr/vignettes/Combined_paper_figures.Rmd |only rmcorr-0.2.0/rmcorr/vignettes/plots/AppendixA_Figure.eps |only rmcorr-0.2.0/rmcorr/vignettes/plots/AppendixA_Figure.pdf |binary rmcorr-0.2.0/rmcorr/vignettes/plots/AppendixC_Figure1.eps |only rmcorr-0.2.0/rmcorr/vignettes/plots/AppendixC_Figure2.eps |only rmcorr-0.2.0/rmcorr/vignettes/plots/Figure1_Rmcorr_vs_reg.eps |only rmcorr-0.2.0/rmcorr/vignettes/plots/Figure1_Rmcorr_vs_reg.pdf |binary rmcorr-0.2.0/rmcorr/vignettes/plots/Figure2_Rmcorr_vs_OLS.eps |only rmcorr-0.2.0/rmcorr/vignettes/plots/Figure2_Rmcorr_vs_OLS.pdf |binary rmcorr-0.2.0/rmcorr/vignettes/plots/Figure3_Transformations.eps |only rmcorr-0.2.0/rmcorr/vignettes/plots/Figure3_Transformations.pdf |binary rmcorr-0.2.0/rmcorr/vignettes/plots/Figure4_Power_curves.eps |only rmcorr-0.2.0/rmcorr/vignettes/plots/Figure4_Power_curves.pdf |binary rmcorr-0.2.0/rmcorr/vignettes/plots/Figure5_Volume_Age.eps |only rmcorr-0.2.0/rmcorr/vignettes/plots/Figure5_Volume_Age.pdf |binary rmcorr-0.2.0/rmcorr/vignettes/plots/Figure6_Visual_Search.eps |only rmcorr-0.2.0/rmcorr/vignettes/plots/Figure6_Visual_Search.pdf |binary 39 files changed, 70 insertions(+), 48 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.13 dated 2017-07-18 and 1.14 dated 2017-08-23
DESCRIPTION | 10 MD5 | 38 +- NAMESPACE | 1 R/bsplines.R | 30 + R/plugins.R | 92 ------ build/partial.rdb |binary data/LondonYorke.rda |binary data/ewcitmeas.rda |binary data/ewmeas.rda |binary inst/GPL | 780 +++++++++++++++++++++++++++++++++++++++++++-------- inst/NEWS | 32 ++ inst/NEWS.Rd | 17 + inst/include/pomp.h | 108 +++---- man/bsplines.Rd | 8 man/pomp.Rd | 16 - src/bspline.c | 92 +++--- src/init.c | 4 src/pomp.h | 108 +++---- src/pomp_internal.h | 77 ++--- src/ssa.c | 188 +++--------- 20 files changed, 1028 insertions(+), 573 deletions(-)
Title: Incremental Calculation of Dynamic Time Warping
Description: Implements incremental calculation of the DTW (Dynamic Time Warping) distance of two vectors, which is specifically useful for life data streams. Further the calculation of the global cost matrix is implemented in C++ to be faster. The Sakoe Chiba band is also implemented. The calculation of DTW is less functional then the one of dtw(), however much faster. For details about DTW see the original paper "Dynamic programming algorithm optimization for spoken word recognition" by Sakoe and Chiba (1978) <DOI:10.1109/TASSP.1978.1163055>. Any feedback is highly appreciated!
Author: Maximilian Leodolter
Maintainer: Maximilian Leodolter <maximilian.leodolter@gmail.com>
Diff between IncDTW versions 0.1.1 dated 2017-08-04 and 0.1.2 dated 2017-08-23
DESCRIPTION | 12 ++-- MD5 | 20 ++++--- NAMESPACE | 9 +++ R/Rfunctions.R | 134 +++++++++++++++++++++++++++++++++++++++++++++++++- build |only inst |only man/IncDTW-package.Rd | 2 man/dtw.Rd | 11 ++-- man/idtw.Rd | 10 ++- man/plot_idtw.Rd |only src/GCM.cpp | 6 +- vignettes |only 12 files changed, 180 insertions(+), 24 deletions(-)
Title: A Monadic Pipeline System
Description: A monadic solution to pipeline analysis. All operations -- and the errors,
warnings and messages they emit -- are merged into a directed graph. Infix
binary operators mediate when values are stored, how exceptions are
handled, and where pipelines branch and merge. The resulting structure may
be queried for debugging or report generation. 'rmonad' complements, rather
than competes with, non-monadic pipeline packages like 'magrittr' or
'pipeR'.
Author: Zebulun Arendsee [aut, cre]
Maintainer: Zebulun Arendsee <zbwrnz@gmail.com>
Diff between rmonad versions 0.1.0 dated 2017-07-13 and 0.2.0 dated 2017-08-23
rmonad-0.1.0/rmonad/R/core_monad-to-monad.R |only rmonad-0.1.0/rmonad/R/core_monad-to-x.R |only rmonad-0.1.0/rmonad/R/util_helpers.R |only rmonad-0.1.0/rmonad/README.md |only rmonad-0.1.0/rmonad/man/Rmonad-class.Rd |only rmonad-0.1.0/rmonad/man/as_monad.Rd |only rmonad-0.1.0/rmonad/man/combine.Rd |only rmonad-0.1.0/rmonad/man/ident.Rd |only rmonad-0.2.0/rmonad/DESCRIPTION | 11 rmonad-0.2.0/rmonad/MD5 | 131 +++-- rmonad-0.2.0/rmonad/NAMESPACE | 18 rmonad-0.2.0/rmonad/NEWS.md | 76 +++ rmonad-0.2.0/rmonad/R/class_accessors.R | 225 +++++++-- rmonad-0.2.0/rmonad/R/class_definitions.R | 355 +++++++++++++-- rmonad-0.2.0/rmonad/R/class_generics.R | 141 ++++- rmonad-0.2.0/rmonad/R/core_bind.R | 195 ++++++-- rmonad-0.2.0/rmonad/R/core_magic.R |only rmonad-0.2.0/rmonad/R/core_metadata.R |only rmonad-0.2.0/rmonad/R/core_operators.R | 89 ++- rmonad-0.2.0/rmonad/R/core_x-to-monad.R | 219 ++++++--- rmonad-0.2.0/rmonad/R/data.R |only rmonad-0.2.0/rmonad/R/rmonad.R | 60 +- rmonad-0.2.0/rmonad/R/side_helpers.R |only rmonad-0.2.0/rmonad/R/side_monad-to-monad.R |only rmonad-0.2.0/rmonad/R/side_monad-to-x.R |only rmonad-0.2.0/rmonad/R/util_internals.R | 100 ---- rmonad-0.2.0/rmonad/build/vignette.rds |binary rmonad-0.2.0/rmonad/data |only rmonad-0.2.0/rmonad/inst/doc/cheatsheet.R |only rmonad-0.2.0/rmonad/inst/doc/cheatsheet.Rmd |only rmonad-0.2.0/rmonad/inst/doc/cheatsheet.html |only rmonad-0.2.0/rmonad/inst/doc/gff-processing.R |only rmonad-0.2.0/rmonad/inst/doc/gff-processing.Rmd |only rmonad-0.2.0/rmonad/inst/doc/gff-processing.html |only rmonad-0.2.0/rmonad/inst/doc/introduction.R | 9 rmonad-0.2.0/rmonad/inst/doc/introduction.Rmd | 40 + rmonad-0.2.0/rmonad/inst/doc/introduction.html | 259 ++++++---- rmonad-0.2.0/rmonad/inst/doc/theory_monad.Rmd |only rmonad-0.2.0/rmonad/inst/doc/theory_monad.html |only rmonad-0.2.0/rmonad/man/Rmonad_cls.Rd |only rmonad-0.2.0/rmonad/man/as.list.Rmonad.Rd | 4 rmonad-0.2.0/rmonad/man/as_dgr_graph.Rd |only rmonad-0.2.0/rmonad/man/bind.Rd | 15 rmonad-0.2.0/rmonad/man/const.Rd | 7 rmonad-0.2.0/rmonad/man/doc.Rd | 7 rmonad-0.2.0/rmonad/man/esc.Rd | 10 rmonad-0.2.0/rmonad/man/extract_metadata.Rd |only rmonad-0.2.0/rmonad/man/false.Rd | 4 rmonad-0.2.0/rmonad/man/false_as_error.Rd | 7 rmonad-0.2.0/rmonad/man/first.Rd |only rmonad-0.2.0/rmonad/man/forget.Rd | 5 rmonad-0.2.0/rmonad/man/get_dependency_matrix.Rd |only rmonad-0.2.0/rmonad/man/gff.Rd |only rmonad-0.2.0/rmonad/man/infix.Rd | 5 rmonad-0.2.0/rmonad/man/is_rmonad.Rd |only rmonad-0.2.0/rmonad/man/lsmeval.Rd | 7 rmonad-0.2.0/rmonad/man/m_delete_value.Rd |only rmonad-0.2.0/rmonad/man/missues.Rd | 9 rmonad-0.2.0/rmonad/man/mreport.Rd |only rmonad-0.2.0/rmonad/man/mtabulate.Rd | 12 rmonad-0.2.0/rmonad/man/null_as_error.Rd | 5 rmonad-0.2.0/rmonad/man/plot.Rmonad.Rd |only rmonad-0.2.0/rmonad/man/print.Rmonad.Rd | 4 rmonad-0.2.0/rmonad/man/relink_node.Rd |only rmonad-0.2.0/rmonad/man/rmonad.Rd | 58 +- rmonad-0.2.0/rmonad/man/rmonad_accessors.Rd | 28 + rmonad-0.2.0/rmonad/man/second.Rd |only rmonad-0.2.0/rmonad/man/splice_function.Rd |only rmonad-0.2.0/rmonad/man/toss.Rd | 5 rmonad-0.2.0/rmonad/man/true.Rd | 5 rmonad-0.2.0/rmonad/man/unbranch.Rd | 2 rmonad-0.2.0/rmonad/man/unnest.Rd |only rmonad-0.2.0/rmonad/man/x_to_monad.Rd |only rmonad-0.2.0/rmonad/tests/testthat/test-accessors.R | 25 - rmonad-0.2.0/rmonad/tests/testthat/test-binops.R | 54 +- rmonad-0.2.0/rmonad/tests/testthat/test-branch.R |only rmonad-0.2.0/rmonad/tests/testthat/test-codestr.R |only rmonad-0.2.0/rmonad/tests/testthat/test-combine.R | 66 +- rmonad-0.2.0/rmonad/tests/testthat/test-corners.R |only rmonad-0.2.0/rmonad/tests/testthat/test-dissection.R | 26 + rmonad-0.2.0/rmonad/tests/testthat/test-environmnet.R |only rmonad-0.2.0/rmonad/tests/testthat/test-internal.R | 52 +- rmonad-0.2.0/rmonad/tests/testthat/test-loop.R |only rmonad-0.2.0/rmonad/tests/testthat/test-magic.R |only rmonad-0.2.0/rmonad/tests/testthat/test-nest.R |only rmonad-0.2.0/rmonad/tests/testthat/test-nse.R |only rmonad-0.2.0/rmonad/tests/testthat/test-time-and-space.R |only rmonad-0.2.0/rmonad/vignettes/cheatsheet.Rmd |only rmonad-0.2.0/rmonad/vignettes/gff-processing.Rmd |only rmonad-0.2.0/rmonad/vignettes/gff-workflow-plot-1.png |only rmonad-0.2.0/rmonad/vignettes/introduction.Rmd | 40 + rmonad-0.2.0/rmonad/vignettes/theory_monad.Rmd |only 92 files changed, 1668 insertions(+), 722 deletions(-)
More information about StepSignalMargiLike at CRAN
Permanent link
Title: Data Visualization for Statistics in Social Science
Description: Collection of plotting and table output functions for data
visualization. Results of various statistical analyses (that are commonly used
in social sciences) can be visualized using this package, including simple and
cross tabulated frequencies, histograms, box plots, (generalized) linear models,
mixed effects models, principal component analysis and correlation matrices,
cluster analyses, scatter plots, stacked scales, effects plots of regression
models (including interaction terms) and much more. This package supports
labelled data.
Author: Daniel Lüdecke [aut, cre],
Carsten Schwemmer [ctb]
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjPlot versions 2.3.2 dated 2017-08-04 and 2.3.3 dated 2017-08-23
DESCRIPTION | 14 MD5 | 180 NAMESPACE | 512 +- NEWS | 7 NEWS.md | 10 R/sjPlotClusterAnalysis.R | 3 R/sjPlotCorr.R | 568 +- R/sjPlotFA.R | 672 +- R/sjPlotFrequencies.R | 1264 ++-- R/sjPlotGroupFrequencies.R | 1744 +++--- R/sjPlotPCA.R | 720 +- R/sjPlotPropTable.R | 952 +-- R/sjPlotResiduals.R | 230 R/sjTabCorr.R | 976 +-- R/sjTabDataFrame.R | 810 +-- R/sjTabFA.R | 930 +-- R/sjTabFrequencies.R | 1408 ++--- R/sjTabPCA.R | 1080 ++-- R/sjTabPropTable.R | 1138 ++-- R/sjTabSPSS.R | 860 +-- R/sjTabStackFrq.R | 942 +-- R/table_functions.R | 520 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/blackwhitefigures.R | 60 inst/doc/blackwhitefigures.html | 272 - inst/doc/custplot.R | 258 - inst/doc/custplot.html | 480 - inst/doc/sjpglm.R | 182 inst/doc/sjpglm.html | 398 - inst/doc/sjplmer.R | 156 inst/doc/sjplmer.html | 382 - inst/doc/sjtbasic.R | 102 inst/doc/sjtbasic.html | 2409 ++++----- inst/doc/sjtitemanalysis.R | 50 inst/doc/sjtitemanalysis.html | 2370 ++++----- inst/doc/sjtlm.R | 242 inst/doc/sjtlm.html |10178 ++++++++++++++++++++-------------------- inst/doc/sjtlmer.R | 188 inst/doc/sjtlmer.html | 8686 +++++++++++++++++----------------- man/dist_chisq.Rd | 118 man/dist_f.Rd | 108 man/dist_norm.Rd | 106 man/dist_t.Rd | 104 man/plot_grid.Rd | 84 man/plot_models.Rd | 368 - man/save_plot.Rd | 110 man/set_theme.Rd | 92 man/sjc.cluster.Rd | 184 man/sjc.dend.Rd | 102 man/sjc.elbow.Rd | 64 man/sjc.grpdisc.Rd | 98 man/sjc.kgap.Rd | 132 man/sjc.qclus.Rd | 344 - man/sjp.aov1.Rd | 224 man/sjp.chi2.Rd | 124 man/sjp.corr.Rd | 250 man/sjp.fa.Rd | 238 man/sjp.frq.Rd | 488 - man/sjp.glm.Rd | 532 +- man/sjp.glmer.Rd | 660 +- man/sjp.gpt.Rd | 238 man/sjp.grpfrq.Rd | 448 - man/sjp.int.Rd | 664 +- man/sjp.kfold_cv.Rd | 120 man/sjp.likert.Rd | 336 - man/sjp.lm.Rd | 758 +- man/sjp.lmer.Rd | 762 +- man/sjp.pca.Rd | 236 man/sjp.poly.Rd | 296 - man/sjp.resid.Rd | 138 man/sjp.scatter.Rd | 342 - man/sjp.setTheme.Rd | 508 - man/sjp.stackfrq.Rd | 250 man/sjp.xtab.Rd | 416 - man/sjplot.Rd | 238 man/sjt.corr.Rd | 316 - man/sjt.df.Rd | 302 - man/sjt.fa.Rd | 262 - man/sjt.frq.Rd | 438 - man/sjt.glm.Rd | 688 +- man/sjt.glmer.Rd | 534 +- man/sjt.grpmean.Rd | 190 man/sjt.itemanalysis.Rd | 364 - man/sjt.lm.Rd | 774 +-- man/sjt.lmer.Rd | 608 +- man/sjt.mwu.Rd | 144 man/sjt.pca.Rd | 268 - man/sjt.stackfrq.Rd | 352 - man/sjt.xtab.Rd | 378 - man/view_df.Rd | 274 - 91 files changed, 29068 insertions(+), 29057 deletions(-)
Title: Deployment Interface for R Markdown Documents and Shiny
Applications
Description: Programmatic deployment interface for 'RPubs', 'shinyapps.io', and
'RStudio Connect'. Supported content types include R Markdown documents,
Shiny applications, Plumber APIs, plots, and static web content.
Author: JJ Allaire
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rsconnect versions 0.8 dated 2017-05-08 and 0.8.5 dated 2017-08-23
DESCRIPTION | 11 +- MD5 | 38 ++++--- NAMESPACE | 1 R/accounts.R | 24 ++++ R/applications.R | 2 R/bundle.R | 31 +++++ R/configureApp.R | 6 - R/dependencies.R | 2 R/deployAPI.R |only R/deployApp.R | 198 +++++++++++++++++++++++++++++-------- R/deployments.R | 36 +++++- R/http.R | 231 ++++++++++++++++++++++++++++++++++++++++++-- R/lint-framework.R | 3 R/lucid.R | 49 +++++++++ R/rpubs.R | 2 R/utils.R | 8 + man/appDependencies.Rd | 2 man/deployAPI.Rd |only man/deployApp.Rd | 9 + tests/testthat/test-http.R |only tests/testthat/test-lint.R | 5 tests/testthat/test-plumber |only 22 files changed, 566 insertions(+), 92 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves.
Author: Takaya Saito [aut, cre],
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.8.0 dated 2017-06-23 and 0.9.1 dated 2017-08-23
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Title: Perform Mokken Scale Analysis in R
Description: Contains functions for performing Mokken
scale analysis on test and questionnaire data. It includes an automated
item selection algorithm, and various checks of model assumptions.
Author: L. Andries van der Ark <L.A.vanderArk@uva.nl>
Maintainer: L. Andries van der Ark <L.A.vanderArk@uva.nl>
Diff between mokken versions 2.8.6 dated 2017-07-03 and 2.8.7 dated 2017-08-23
mokken-2.8.6/mokken/R/MLcoefH30June2017.R |only mokken-2.8.6/mokken/R/MLcoefHOld.R |only mokken-2.8.7/mokken/DESCRIPTION | 8 +-- mokken-2.8.7/mokken/MD5 | 17 +++--- mokken-2.8.7/mokken/NAMESPACE | 2 mokken-2.8.7/mokken/R/MLcoefH.R |only mokken-2.8.7/mokken/R/MLweight.R | 18 +++--- mokken-2.8.7/mokken/R/check.errors.R | 37 +++++++++++--- mokken-2.8.7/mokken/R/check.norms.R | 20 ------- mokken-2.8.7/mokken/R/internalFunctions.R | 23 ++++++++ mokken-2.8.7/mokken/inst/doc/GettingStartedWithMokken.pdf |binary 11 files changed, 76 insertions(+), 49 deletions(-)
Title: R Client for 'kintone' API
Description: Retrieve data from 'kintone' (<https://www.kintone.com/>) via its API.
'kintone' is an enterprise application platform.
Author: Hiroaki Yutani [aut, cre]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between kntnr versions 0.4.0 dated 2016-11-17 and 0.4.1 dated 2017-08-23
DESCRIPTION | 17 +-- MD5 | 32 ++--- NAMESPACE | 44 ++----- NEWS.md | 11 + R/kntn_file.R | 8 - R/kntn_parse.R | 169 ++++++++++-------------------- R/kntn_unnest.R | 2 R/kntnr-package.R | 1 README.md | 3 inst/extdata/records.json | 2 man/kntn_auth.Rd | 111 +++++++++---------- man/kntn_file.Rd | 81 ++++++-------- man/kntn_parse.Rd | 81 ++++++-------- man/kntn_record.Rd | 214 +++++++++++++++++++------------------- man/kntn_unnest.Rd | 33 ++--- man/kntnr.Rd | 21 +-- tests/testthat/test-parse-field.R | 109 ++++++++++++++++++- 17 files changed, 487 insertions(+), 452 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <http://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Neal Richardson [aut, cre],
Jonathan Keane [ctb],
Gordon Shotwell [ctb]
Maintainer: Neal Richardson <neal@crunch.io>
Diff between crunch versions 1.17.0 dated 2017-06-06 and 1.18.0 dated 2017-08-23
crunch-1.17.0/crunch/inst/app.crunch.io/api/datasets/search-a5f1b7.json |only crunch-1.17.0/crunch/inst/app.crunch.io/api/datasets/search-c89aba.json |only crunch-1.18.0/crunch/DESCRIPTION | 42 + crunch-1.18.0/crunch/MD5 | 226 +++++----- crunch-1.18.0/crunch/NAMESPACE | 35 + crunch-1.18.0/crunch/R/AllClasses.R | 17 crunch-1.18.0/crunch/R/AllGenerics.R | 28 + crunch-1.18.0/crunch/R/R-to-variable.R | 35 + crunch-1.18.0/crunch/R/api.R | 28 + crunch-1.18.0/crunch/R/as-data-frame.R | 177 +++++++ crunch-1.18.0/crunch/R/batches.R | 1 crunch-1.18.0/crunch/R/case-variables.R |only crunch-1.18.0/crunch/R/categories.R | 36 + crunch-1.18.0/crunch/R/consent.R | 2 crunch-1.18.0/crunch/R/copy.R | 5 crunch-1.18.0/crunch/R/cube-dims.R | 18 crunch-1.18.0/crunch/R/dataset-stream.R |only crunch-1.18.0/crunch/R/dataset-update.R | 17 crunch-1.18.0/crunch/R/dataset.R | 47 +- crunch-1.18.0/crunch/R/export-dataset.R | 10 crunch-1.18.0/crunch/R/expressions.R | 22 crunch-1.18.0/crunch/R/formula.R | 11 crunch-1.18.0/crunch/R/geo.R |only crunch-1.18.0/crunch/R/get-datasets.R | 4 crunch-1.18.0/crunch/R/github.R | 2 crunch-1.18.0/crunch/R/interact.R |only crunch-1.18.0/crunch/R/make-array.R | 17 crunch-1.18.0/crunch/R/multitables.R | 83 +++ crunch-1.18.0/crunch/R/ordering.R | 85 +++ crunch-1.18.0/crunch/R/search.R | 16 crunch-1.18.0/crunch/R/share.R | 2 crunch-1.18.0/crunch/R/show.R | 27 - crunch-1.18.0/crunch/R/subvariables.R | 18 crunch-1.18.0/crunch/R/tab-book.R | 18 crunch-1.18.0/crunch/R/univariate.R | 21 crunch-1.18.0/crunch/R/user.R | 18 crunch-1.18.0/crunch/R/variable-delete.R | 2 crunch-1.18.0/crunch/R/variable-derivation.R |only crunch-1.18.0/crunch/R/variable-summary.R | 2 crunch-1.18.0/crunch/R/variable-type.R | 7 crunch-1.18.0/crunch/R/variable.R | 26 + crunch-1.18.0/crunch/R/zcl.R | 17 crunch-1.18.0/crunch/inst/app.crunch.io/api.json | 6 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1.json | 3 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/cube-7b96dd.json |only crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/multitables/4de322.json | 2 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/multitables/ed30c4.json | 2 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/stream.json |only crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables-d118fa.json | 9 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables.json | 9 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/birthyrPlus.json |only crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/hierarchical-d118fa.json | 1 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/hierarchical.json | 1 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/location |only crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/location.json |only crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/nested-hierarchical.json | 1 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/relative-hierarchical.json | 1 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/starttime/values-10a927.json |only crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/starttime/values-37a0db.json |only crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/1/variables/starttime/values-4fe902.json |only crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/2.json | 3 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/3.json | 3 crunch-1.18.0/crunch/inst/app.crunch.io/api/datasets/3/stream.json |only crunch-1.18.0/crunch/inst/app.crunch.io/api/geodata |only crunch-1.18.0/crunch/inst/app.crunch.io/api/geodata.json |only crunch-1.18.0/crunch/inst/app.crunch.io/api/search-174ede.json |only crunch-1.18.0/crunch/inst/crunch-test.R | 9 crunch-1.18.0/crunch/man/Categories.Rd | 3 crunch-1.18.0/crunch/man/addGeoMetadata.Rd |only crunch-1.18.0/crunch/man/appendStream.Rd |only crunch-1.18.0/crunch/man/availableGeodataFeatures.Rd |only crunch-1.18.0/crunch/man/catalog-extract.Rd | 9 crunch-1.18.0/crunch/man/categoriesFromLevels.Rd |only crunch-1.18.0/crunch/man/copyOrder.Rd |only crunch-1.18.0/crunch/man/copyOrderGroup.Rd |only crunch-1.18.0/crunch/man/crunch-is.Rd | 15 crunch-1.18.0/crunch/man/dataset-to-R.Rd | 6 crunch-1.18.0/crunch/man/dataset-update.Rd | 6 crunch-1.18.0/crunch/man/delete.Rd | 7 crunch-1.18.0/crunch/man/derivations.Rd |only crunch-1.18.0/crunch/man/describe.Rd | 18 crunch-1.18.0/crunch/man/ensureValidCase.Rd |only crunch-1.18.0/crunch/man/exportDataset.Rd | 6 crunch-1.18.0/crunch/man/fortify.Rd |only crunch-1.18.0/crunch/man/geo.Rd |only crunch-1.18.0/crunch/man/interactVariables.Rd |only crunch-1.18.0/crunch/man/makeArray.Rd | 9 crunch-1.18.0/crunch/man/makeCaseVariable.Rd |only crunch-1.18.0/crunch/man/makeInteractions.Rd |only crunch-1.18.0/crunch/man/matchCatToFeat.Rd |only crunch-1.18.0/crunch/man/merge.CrunchDataFrame.Rd |only crunch-1.18.0/crunch/man/pendingStream.Rd |only crunch-1.18.0/crunch/man/resetPassword.Rd |only crunch-1.18.0/crunch/man/scoreCatToFeat.Rd |only crunch-1.18.0/crunch/man/searchDatasets.Rd |only crunch-1.18.0/crunch/man/show-crunch.Rd | 3 crunch-1.18.0/crunch/man/streamRows.Rd |only crunch-1.18.0/crunch/man/subvars-extract.Rd | 7 crunch-1.18.0/crunch/man/toVariable.Rd | 3 crunch-1.18.0/crunch/man/webApp.Rd |only crunch-1.18.0/crunch/tests/testthat.R | 16 crunch-1.18.0/crunch/tests/testthat/helper.R | 11 crunch-1.18.0/crunch/tests/testthat/test-add-variable.R | 19 crunch-1.18.0/crunch/tests/testthat/test-api.R | 13 crunch-1.18.0/crunch/tests/testthat/test-as-data-frame.R | 186 ++++++++ crunch-1.18.0/crunch/tests/testthat/test-case-variable.R |only crunch-1.18.0/crunch/tests/testthat/test-categories.R | 23 - crunch-1.18.0/crunch/tests/testthat/test-compare.R | 6 crunch-1.18.0/crunch/tests/testthat/test-copy-variable.R | 3 crunch-1.18.0/crunch/tests/testthat/test-crunchbox.R | 4 crunch-1.18.0/crunch/tests/testthat/test-cube-bases.R | 4 crunch-1.18.0/crunch/tests/testthat/test-cube-dims.R | 2 crunch-1.18.0/crunch/tests/testthat/test-cube-with-expression.R | 91 +++- crunch-1.18.0/crunch/tests/testthat/test-dataset-entity.R | 33 + crunch-1.18.0/crunch/tests/testthat/test-dataset-reference.R | 2 crunch-1.18.0/crunch/tests/testthat/test-dataset-stream.R |only crunch-1.18.0/crunch/tests/testthat/test-deep-copy-variable.R | 3 crunch-1.18.0/crunch/tests/testthat/test-derive-array.R | 26 + crunch-1.18.0/crunch/tests/testthat/test-derive.R | 108 ++++ crunch-1.18.0/crunch/tests/testthat/test-exclusion-filter.R | 2 crunch-1.18.0/crunch/tests/testthat/test-export-dataset.R | 5 crunch-1.18.0/crunch/tests/testthat/test-expressions.R | 34 + crunch-1.18.0/crunch/tests/testthat/test-filters.R | 21 crunch-1.18.0/crunch/tests/testthat/test-fork.R | 2 crunch-1.18.0/crunch/tests/testthat/test-formula.R |only crunch-1.18.0/crunch/tests/testthat/test-geo.R |only crunch-1.18.0/crunch/tests/testthat/test-get-datasets.R | 6 crunch-1.18.0/crunch/tests/testthat/test-interact.R |only crunch-1.18.0/crunch/tests/testthat/test-join.R | 2 crunch-1.18.0/crunch/tests/testthat/test-multitables.R | 111 +++- crunch-1.18.0/crunch/tests/testthat/test-subvariables.R | 4 crunch-1.18.0/crunch/tests/testthat/test-user.R | 17 crunch-1.18.0/crunch/tests/testthat/test-variable-catalog.R | 34 - crunch-1.18.0/crunch/tests/testthat/test-variable-delete.R | 9 crunch-1.18.0/crunch/tests/testthat/test-variable-order.R | 223 +++++++-- crunch-1.18.0/crunch/tests/testthat/test-variables.R | 20 136 files changed, 1887 insertions(+), 417 deletions(-)