Thu, 31 Aug 2017

Package R2SWF updated to version 0.9-2 with previous version 0.9-1 dated 2015-09-20

Title: Convert R Graphics to Flash Animations
Description: Using the 'Ming' library <http://www.libming.org/> to create Flash animations. Users can either use the 'SWF' device swf() to generate 'SWF' file directly through plotting functions like plot() and lines(), or convert images of other formats ('SVG', 'PNG', 'JPEG') into 'SWF'.
Author: Yixuan Qiu, Yihui Xie, Cameron Bracken and authors of included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>

Diff between R2SWF versions 0.9-1 dated 2015-09-20 and 0.9-2 dated 2017-08-31

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Package R2MLwiN updated to version 0.8-5 with previous version 0.8-4 dated 2017-06-24

Title: Running 'MLwiN' from Within R
Description: An R command interface to the 'MLwiN' multilevel modelling software package.
Author: Zhengzheng Zhang [aut, cre], Chris Charlton [aut], Richard Parker [aut], George Leckie [aut], William Browne [aut]
Maintainer: Zhengzheng Zhang <zhengzheng236@gmail.com>

Diff between R2MLwiN versions 0.8-4 dated 2017-06-24 and 0.8-5 dated 2017-08-31

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Package DEploid updated to version 0.4.4 with previous version 0.4.2 dated 2017-08-09

Title: Deconvolute Mixed Genomes with Unknown Proportions
Description: Traditional phasing programs are limited to diploid organisms. Our method modifies Li and Stephens algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haplotype searches in a multiple infection setting. This package is primarily developed as part of the Pf3k project, which is a global collaboration using the latest sequencing technologies to provide a high-resolution view of natural variation in the malaria parasite Plasmodium falciparum. Parasite DNA are extracted from patient blood sample, which often contains more than one parasite strain, with unknown proportions. This package is used for deconvoluting mixed haplotypes, and reporting the mixture proportions from each sample.
Author: Joe Zhu [aut, cre, cph], Jacob Almagro-Garcia [aut, cph], Gil McVean [aut, cph], University of Oxford [cph], Yinghan Liu [ctb], CodeCogs Zyba Ltd [com, cph], Deepak Bandyopadhyay [com, cph], Lutz Kettner [com, cph]
Maintainer: Joe Zhu <joe.zhu@well.ox.ac.uk>

Diff between DEploid versions 0.4.2 dated 2017-08-09 and 0.4.4 dated 2017-08-31

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 inst/doc/dEploid-Arguments.html     |    4 +-
 man/plotAltVsRefPlotly.Rd           |    4 +-
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 src/DEploid/mcmc.cpp                |    8 +++-
 tests/testthat/test-DEploid_tools.R |   64 +++++++++++++++++++++++++++++++++---
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Package ggspectra updated to version 0.2.2 with previous version 0.2.1 dated 2017-03-20

Title: Extensions to 'ggplot2' for Radiation Spectra
Description: Additional annotations, and stats for plotting "light" spectra with 'ggplot2', together with specializations of ggplot() and plot() methods for spectral data stored in objects of the classes defined in package 'photobiology' and a plot() method for objects of class "waveband", also defined in package 'photobiology'.
Author: Pedro J. Aphalo [aut, cre], Titta K. Kotilainen [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>

Diff between ggspectra versions 0.2.1 dated 2017-03-20 and 0.2.2 dated 2017-08-31

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Package rstpm2 updated to version 1.4.0 with previous version 1.3.4 dated 2016-10-09

Title: Generalized Survival Models
Description: R implementation of generalized survival models, where g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects. This also includes a smooth implementation of accelerated failure time models.
Author: Mark Clements [aut, cre], Xing-Rong Liu [aut], Paul Lambert [ctb]
Maintainer: Mark Clements <mark.clements@ki.se>

Diff between rstpm2 versions 1.3.4 dated 2016-10-09 and 1.4.0 dated 2017-08-31

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Package PLmixed updated to version 0.1.1 with previous version 0.1.0 dated 2017-07-18

Title: Estimate (Generalized) Linear Mixed Models with Factor Structures
Description: Utilizes the 'lme4' package and the optim() function from 'stats' to estimate (generalized) linear mixed models (GLMM) with factor structures using a profile likelihood approach, as outlined in Jeon and Rabe-Hesketh (2012) <doi:10.3102/1076998611417628>. Factor analysis and item response models can be extended to allow for an arbitrary number of nested and crossed random effects, making it useful for multilevel and cross-classified models.
Author: Minjeong Jeon [aut], Nicholas Rockwood [aut, cre]
Maintainer: Nicholas Rockwood <rockwood.19@osu.edu>

Diff between PLmixed versions 0.1.0 dated 2017-07-18 and 0.1.1 dated 2017-08-31

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Package pre updated to version 0.4 with previous version 0.3.0 dated 2017-08-03

Title: Prediction Rule Ensembles
Description: Derives prediction rule ensembles (PREs). Largely follows the procedure for deriving PREs as described in Friedman & Popescu (2008; <DOI:10.1214/07-AOAS148>), with several adjustments and improvements. The main function pre() derives prediction rule ensembles consisting of rules and/or linear terms for binary, count and continuous responses. Function gpe() derives generalized prediction ensembles, consisting of rules, hinge and linear functions of the predictor variables.
Author: Marjolein Fokkema [aut, cre], Benjamin Christoffersen [aut]
Maintainer: Marjolein Fokkema <m.fokkema@fsw.leidenuniv.nl>

Diff between pre versions 0.3.0 dated 2017-08-03 and 0.4 dated 2017-08-31

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Package lmSupport updated to version 2.9.11 with previous version 2.9.8 dated 2017-01-17

Title: Support for Linear Models
Description: Provides tools and a consistent interface to support analyses using General, Generalized, and Multi-level Linear Models.
Author: John Curtin <jjcurtin@wisc.edu>
Maintainer: John Curtin <jjcurtin@wisc.edu>

Diff between lmSupport versions 2.9.8 dated 2017-01-17 and 2.9.11 dated 2017-08-31

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New package cdparcoord with initial version 1.0.0
Package: cdparcoord
Version: 1.0.0
Author: Norm Matloff <normmatloff@gmail.com> and Vincent Yang <vinyang@ucdavis.edu> and Harrison Nguyen <hhnguy@ucdavis.edu>
Maintainer: Norm Matloff <normmatloff@gmail.com>
Date: 2017-08-29
Title: Top Frequency-Based Parallel Coordinates
Description: Parallel coordinate plotting with resolutions for large data sets and missing values.
Depends: R (>= 3.2.0), data.table, plotly, freqparcoord, magrittr, partools
Imports:
Suggests: rmarkdown, knitr
VignetteBuilder: knitr
LazyLoad: no
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2017-08-31 07:54:30 UTC; matloff
Date/Publication: 2017-08-31 17:47:12 UTC
Repository: CRAN

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New package ari with initial version 0.1.0
Package: ari
Type: Package
Title: Automated R Instructor
Version: 0.1.0
Authors@R: c( person("Sean", "Kross", email = "sean@seankross.com", role = c("aut", "cre")), person("John", "Muschelli", role = "ctb") )
Description: Create videos from 'R Markdown' documents, or images and audio files. These images can come from image files or HTML slides, and the audio files can be provided by the user or computer voice narration can be created using 'Amazon Polly'. The purpose of this package is to allow users to create accessible, translatable, and reproducible lecture videos. See <https://aws.amazon.com/polly/> for more information.
SystemRequirements: ffmpeg (>= 3.2.4)
Depends: R (>= 3.1.0)
Imports: aws.polly, tuneR, webshot, purrr, rmarkdown, xml2, rvest, tools, progress
Suggests: testthat, grDevices, xaringan
License: MIT + file LICENSE
URL: http://github.com/seankross/ari
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2017-08-31 13:35:51 UTC; sean
Author: Sean Kross [aut, cre], John Muschelli [ctb]
Maintainer: Sean Kross <sean@seankross.com>
Repository: CRAN
Date/Publication: 2017-08-31 17:53:50 UTC

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Package wktmo updated to version 1.0.5 with previous version 1.0.3 dated 2017-06-05

Title: Converting Weekly Data to Monthly Data
Description: Converts weekly data to monthly data. Users can use three types of week formats: ISO week, epidemiology week (epi week) and calendar date.
Author: You Li [aut, cre]
Maintainer: You Li <You.Li2@ed.ac.uk>

Diff between wktmo versions 1.0.3 dated 2017-06-05 and 1.0.5 dated 2017-08-31

 DESCRIPTION      |    8 ++++----
 MD5              |   10 +++++-----
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 R/weeklyFlu.R    |    2 +-
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Package openair updated to version 2.1-5 with previous version 2.1-0 dated 2017-04-12

Title: Tools for the Analysis of Air Pollution Data
Description: Tools to analyse, interpret and understand air pollution data. Data are typically hourly time series and both monitoring data and dispersion model output can be analysed. Many functions can also be applied to other data, including meteorological and traffic data.
Author: David Carslaw [aut, cre], Karl Ropkins [aut]
Maintainer: David Carslaw <david.carslaw@york.ac.uk>

Diff between openair versions 2.1-0 dated 2017-04-12 and 2.1-5 dated 2017-08-31

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Package itsadug updated to version 2.3 with previous version 2.2 dated 2016-06-13

Title: Interpreting Time Series and Autocorrelated Data Using GAMMs
Description: GAMM (Generalized Additive Mixed Modeling; Lin & Zhang, 1999) as implemented in the R package 'mgcv' (Wood, S.N., 2006; 2011) is a nonlinear regression analysis which is particularly useful for time course data such as EEG, pupil dilation, gaze data (eye tracking), and articulography recordings, but also for behavioral data such as reaction times and response data. As time course measures are sensitive to autocorrelation problems, GAMMs implements methods to reduce the autocorrelation problems. This package includes functions for the evaluation of GAMM models (e.g., model comparisons, determining regions of significance, inspection of autocorrelational structure in residuals) and interpreting of GAMMs (e.g., visualization of complex interactions, and contrasts).
Author: Jacolien van Rij [aut, cre], Martijn Wieling [aut], R. Harald Baayen [aut], Hedderik van Rijn [ctb]
Maintainer: Jacolien van Rij <vanrij.jacolien@gmail.com>

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Package glmmsr updated to version 0.2.0 with previous version 0.1.1 dated 2016-03-13

Title: Fit a Generalized Linear Mixed Model
Description: Conduct inference about generalized linear mixed models, with a choice about which method to use to approximate the likelihood. In addition to the Laplace and adaptive Gaussian quadrature approximations, which are borrowed from 'lme4', the likelihood may be approximated by the sequential reduction approximation, or an importance sampling approximation. These methods provide an accurate approximation to the likelihood in some situations where it is not possible to use adaptive Gaussian quadrature.
Author: Helen Ogden [aut, cre]
Maintainer: Helen Ogden <heogden12@gmail.com>

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Package catR updated to version 3.13 with previous version 3.12 dated 2017-01-08

Title: Generation of IRT Response Patterns under Computerized Adaptive Testing
Description: Provides routines for the generation of response patterns under unidimensional dichotomous and polytomous computerized adaptive testing (CAT) framework. It holds many standard functions to estimate ability, select the first item(s) to administer and optimally select the next item, as well as several stopping rules. Options to control for item exposure and content balancing are also available (Magis and Raiche (2012) <doi:10.18637/jss.v048.i08>).
Author: David Magis (U Liege, Belgium), Gilles Raiche (UQAM, Canada), Juan Ramon Barrada (U Zaragoza, Spain)
Maintainer: David Magis <david.magis@ulg.ac.be>

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Package BNPMIXcluster updated to version 1.1.0 with previous version 0.2.0 dated 2017-02-01

Title: Bayesian Nonparametric Model for Clustering with Mixed Scale Variables
Description: Bayesian nonparametric approach for clustering that is capable to combine different types of variables (continuous, ordinal and nominal) and also accommodates for different sampling probabilities in a complex survey design. The model is based on a location mixture model with a Poisson-Dirichlet process prior on the location parameters of the associated latent variables. The package performs the clustering model described in Carmona, C., Nieto-Barajas, L. E., Canale, A. (2016) <arXiv:1612.00083>.
Author: Christian Carmona [aut, cre], Luis Nieto-Barajas [aut], Antonio Canale [ctb]
Maintainer: Christian Carmona <carmona@stats.ox.ac.uk>

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Package RcppAnnoy updated to version 0.0.9 with previous version 0.0.8 dated 2016-10-01

Title: 'Rcpp' Bindings for 'Annoy', a Library for Approximate Nearest Neighbors
Description: 'Annoy' is a small C++ library for Approximate Nearest Neighbors written for efficient memory usage as well an ability to load from / save to disk. This package provides an R interface by relying on the 'Rcpp' package, exposing the same interface as the original Python wrapper to 'Annoy'. See <https://github.com/spotify/annoy> for more on 'Annoy'. 'Annoy' is released under Version 2.0 of the Apache License. Also included is a small Windows port of 'mmap' which is released under the MIT license.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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New package npphen with initial version 1.1-0
Package: npphen
Type: Package
Title: Vegetation Phenological Cycle and Anomaly Detection using Remote Sensing Data
Version: 1.1-0
Date: 2017-08-22
Author: Roberto O. Chávez [cre, aut], Sergio A. Estay [cre, aut], Carlos G. Riquelme [ctb]
Maintainer: Roberto O. Chávez <roberto.chavez.o@gmail.com>
Description: Calculates phenological cycle and anomalies using a non-parametric approach applied to time series of vegetation indices derived from remote sensing data or field measurements. The package implements basic and high-level functions for manipulating vector data (numerical series) and raster data (satellite derived products). Processing of very large raster files is supported.
Depends: R (>= 3.3.0), raster, ks
Imports: methods, graphics, stats, rgdal, lubridate, rts, snow
License: GPL (>= 3)
Suggests: rgeos (>= 0.3-8), ncdf4, tcltk
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1.9000
NeedsCompilation: no
Packaged: 2017-08-30 14:40:13 UTC; fenrir
Repository: CRAN
Date/Publication: 2017-08-31 10:05:45 UTC

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Package multipanelfigure updated to version 0.10.5 with previous version 0.10.3 dated 2017-08-26

Title: Infrastructure to Assemble Multi-Panel Figures (from Grobs)
Description: Tools to create a layout for figures made of multiple panels, and to fill the panels with base, 'lattice', 'ggplot2' and 'ComplexHeatmap' plots, grobs, and PNG, JPEG, SVG and TIFF images.
Author: Johannes Graumann [cre, aut], Richard Cotton [ctb]
Maintainer: Johannes Graumann <jog2030@qatar-med.cornell.edu>

Diff between multipanelfigure versions 0.10.3 dated 2017-08-26 and 0.10.5 dated 2017-08-31

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Package descriptr updated to version 0.2.0 with previous version 0.1.1 dated 2017-06-01

Title: Generate Descriptive Statistics & Explore Statistical Distributions
Description: Generate descriptive statistics such as measures of location, dispersion, frequency tables, cross tables, group summaries and multiple one/two way tables. Visualize and compute percentiles/probabilities of normal, t, f, chi square and binomial distributions.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>

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Package RAdwords updated to version 0.1.13 with previous version 0.1.12 dated 2017-04-06

Title: Loading Google Adwords Data into R
Description: Aims at loading Google Adwords data into R. Adwords is an online advertising service that enables advertisers to display advertising copy to web users (see <https://developers.google.com/adwords/> for more information). Therefore the package implements three main features. First, the package provides an authentication process for R with the Google Adwords API (see <https://developers.google.com/adwords/api/> for more information) via OAUTH2. Second, the package offers an interface to apply the Adwords query language in R and query the Adwords API with ad-hoc reports. Third, the received data are transformed into suitable data formats for further data processing and data analysis.
Author: Johannes Burkhardt <johannes.burkhardt@gmail.com>, Matthias Bannert <matthias.bannert@gmail.com>
Maintainer: Johannes Burkhardt <johannes.burkhardt@gmail.com>

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Package NHMSAR updated to version 1.6 with previous version 1.5 dated 2017-05-25

Title: Non-Homogeneous Markov Switching Autoregressive Models
Description: Calibration, simulation, validation of (non-)homogeneous Markov switching autoregressive models with Gaussian or von Mises innovations. Penalization methods are implemented for Markov Switching Vector Autoregressive Models of order 1 only. Most functions of the package handle missing values.
Author: Valerie Monbet
Maintainer: Valerie Monbet <valerie.monbet@gmail.com>

Diff between NHMSAR versions 1.5 dated 2017-05-25 and 1.6 dated 2017-08-31

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Package fDMA updated to version 2.0 with previous version 1.1 dated 2017-07-11

Title: Dynamic Model Averaging and Dynamic Model Selection for Continuous Outcomes
Description: It allows to estimate Dynamic Model Averaging, Dynamic Model Selection and Median Probability Model. The original methods (see References) are implemented, as well as, selected further modifications of these methods. In particular the User might choose between recursive moment estimation and exponentially moving average for variance updating. Inclusion probabilities might be modified in a way using Google Trends. The code is written in a way which minimises the computational burden (which is quite an obstacle for Dynamic Model Averaging if many variables are used). For example, this package allows for parallel computations under Windows machines. Additionally, the User might reduce a set of models according to a certain algorithm. The package is designed in a way that is hoped to be especially useful in economics and finance.
Author: Krzysztof Drachal [aut, cre] (Faculty of Economic Sciences, University of Warsaw, Poland)
Maintainer: Krzysztof Drachal <kdrachal@wne.uw.edu.pl>

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More information about fDMA at CRAN
Permanent link

Package olsrr updated to version 0.3.0 with previous version 0.2.0 dated 2017-06-05

Title: Tools for Teaching and Learning OLS Regression
Description: Tools for teaching and learning ordinary least squares regression. Includes comprehensive regression output, heteroskedasticity tests, collinearity diagnostics, residual diagnostics, measures of influence, model fit assessment and variable selection procedures.
Author: Aravind Hebbali [aut, cre]
Maintainer: Aravind Hebbali <hebbali.aravind@gmail.com>

Diff between olsrr versions 0.2.0 dated 2017-06-05 and 0.3.0 dated 2017-08-31

 DESCRIPTION                          |    8 
 MD5                                  |  206 ++++++------
 NAMESPACE                            |    3 
 NEWS.md                              |   25 +
 R/RcppExports.R                      |    2 
 R/ols-added-variable-plot.R          |   30 +
 R/ols-all-possible-regression.R      |   52 +--
 R/ols-bartlett-test.R                |    4 
 R/ols-best-subsets-regression.R      |   17 
 R/ols-breusch-pagan-test.R           |    4 
 R/ols-collinearity-diagnostics.R     |    7 
 R/ols-cooks-d-barplot.R              |    2 
 R/ols-cooks-d-chart.R                |    2 
 R/ols-f-test.R                       |    4 
 R/ols-influence-measures.R           |    3 
 R/ols-information-criteria.R         |    4 
 R/ols-regress_compute.R              |   48 +-
 R/ols-rstud-vs-lev-plot.R            |    2 
 R/ols-score-test.R                   |    4 
 R/ols-stepaic-backward-regression.R  |   56 +--
 R/ols-stepaic-both-regression.R      |   10 
 R/ols-stepaic-forward-regression.R   |   36 +-
 R/output.R                           |  193 ++++++-----
 R/utils.R                            |   73 ++--
 README.md                            |    3 
 build/vignette.rds                   |binary
 inst/doc/heteroskedasticity.html     |  188 +++++------
 inst/doc/influence_measures.html     |   24 -
 inst/doc/intro.html                  |   86 ++---
 inst/doc/regression_diagnostics.html |   94 +++--
 inst/doc/residual_diagnostics.html   |   10 
 inst/doc/variable_selection.html     |  598 +++++++++++++++++------------------
 man/cement.Rd                        |    1 
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 tests/testthat/test-all-possible.R   |   12 
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 tests/testthat/test-regress.R        |   14 
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 104 files changed, 1057 insertions(+), 1037 deletions(-)

More information about olsrr at CRAN
Permanent link

Package uavRmp (with last version 0.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-08-30 0.5

Permanent link

Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.