Title: Data Sets and Supplemental Functions from 'OpenIntro' Textbooks
Description: Supplemental functions and data for 'OpenIntro' resources, which includes open-source textbooks and resources for introductory statistics at <http://www.openintro.org>. The package contains data sets used in our open-source textbooks along with custom plotting functions for reproducing book figures. Note that many functions and examples include color transparency; some plotting elements may not show up properly (or at all) when run in some versions of Windows operating system.
Author: David M Diez, Christopher D Barr, and Mine Cetinkaya-Rundel
Maintainer: David M Diez <david@openintro.org>
Diff between openintro versions 1.4 dated 2012-09-01 and 1.7.1 dated 2017-09-07
openintro-1.4/openintro/ReadMe.txt |only openintro-1.7.1/openintro/DESCRIPTION | 20 openintro-1.7.1/openintro/MD5 | 265 +++ openintro-1.7.1/openintro/R/ArrowLines.R |only openintro-1.7.1/openintro/R/Braces.R |only openintro-1.7.1/openintro/R/CCP.R |only openintro-1.7.1/openintro/R/CT2DF.R |only openintro-1.7.1/openintro/R/ChiSquareTail.R |only openintro-1.7.1/openintro/R/MosaicPlot.R |only openintro-1.7.1/openintro/R/PlotWLine.R |only openintro-1.7.1/openintro/R/WriteTable.R |only openintro-1.7.1/openintro/R/boxPlot.R | 5 openintro-1.7.1/openintro/R/dlsegments.R |only openintro-1.7.1/openintro/R/dotPlotStack.R |only openintro-1.7.1/openintro/R/edaPlot.R | 776 +++++----- openintro-1.7.1/openintro/R/fadeColor.R | 55 openintro-1.7.1/openintro/R/histPlot.R | 212 +- openintro-1.7.1/openintro/R/linResPlot.R |only openintro-1.7.1/openintro/R/lmPlot.R | 241 +-- openintro-1.7.1/openintro/R/loop.R | 29 openintro-1.7.1/openintro/R/lsegments.R |only openintro-1.7.1/openintro/R/makeTube.R | 194 +- openintro-1.7.1/openintro/R/myPDF.R | 13 openintro-1.7.1/openintro/R/myPNG.R | 19 openintro-1.7.1/openintro/R/normTail.R | 148 + openintro-1.7.1/openintro/R/state2abbr.R | 7 openintro-1.7.1/openintro/R/treeDiag.R | 181 +- openintro-1.7.1/openintro/R/zzz.R | 10 openintro-1.7.1/openintro/data/acs12.rda |only openintro-1.7.1/openintro/data/ami.occurrences.rda |only openintro-1.7.1/openintro/data/association.1.3.rda |only openintro-1.7.1/openintro/data/association.4.6.rda |only openintro-1.7.1/openintro/data/association.7.12.rda |only openintro-1.7.1/openintro/data/assortive.mating.rda |only openintro-1.7.1/openintro/data/avandia.rda |only openintro-1.7.1/openintro/data/babies.crawl.rda |only openintro-1.7.1/openintro/data/babies.rda |only openintro-1.7.1/openintro/data/bac.rda |only openintro-1.7.1/openintro/data/books.rda |only openintro-1.7.1/openintro/data/burger.rda |only openintro-1.7.1/openintro/data/cancer.in.dogs.rda |only openintro-1.7.1/openintro/data/cards.rda |only openintro-1.7.1/openintro/data/cats.rda |only openintro-1.7.1/openintro/data/cherry.rda |only openintro-1.7.1/openintro/data/chick.wts.rda |only openintro-1.7.1/openintro/data/china.rda |only openintro-1.7.1/openintro/data/corr.match.rda |only openintro-1.7.1/openintro/data/county.w.sm.ban.rda |only openintro-1.7.1/openintro/data/cpr.rda |only openintro-1.7.1/openintro/data/datalist | 89 + openintro-1.7.1/openintro/data/diamonds.rda |only openintro-1.7.1/openintro/data/dream.rda |only openintro-1.7.1/openintro/data/drug.use.rda |only openintro-1.7.1/openintro/data/ebola.survey.rda |only openintro-1.7.1/openintro/data/elmhurst.rda |only openintro-1.7.1/openintro/data/epa2012.rda |only openintro-1.7.1/openintro/data/exams.rda |only openintro-1.7.1/openintro/data/fcid.rda |only openintro-1.7.1/openintro/data/fheights.rda |only openintro-1.7.1/openintro/data/full.body.scan.rda |only openintro-1.7.1/openintro/data/gear.company.rda |only openintro-1.7.1/openintro/data/gender.discrimination.rda |only openintro-1.7.1/openintro/data/global.warming.pew.rda |only openintro-1.7.1/openintro/data/goog.rda |only openintro-1.7.1/openintro/data/gov.poll.rda |only openintro-1.7.1/openintro/data/gpa.rda |only openintro-1.7.1/openintro/data/gpa_study_hours.rda |only openintro-1.7.1/openintro/data/gsearch.rda |only openintro-1.7.1/openintro/data/health_coverage.rda |only openintro-1.7.1/openintro/data/healthcare.law.survey.rda |only openintro-1.7.1/openintro/data/healthcare.survey.rda |only openintro-1.7.1/openintro/data/housing.rda |only openintro-1.7.1/openintro/data/husbands.wives.rda |only openintro-1.7.1/openintro/data/immigration.rda |only openintro-1.7.1/openintro/data/iris.rda |only openintro-1.7.1/openintro/data/jury.rda |only openintro-1.7.1/openintro/data/leg_mari.rda |only openintro-1.7.1/openintro/data/male.heights.rda |only openintro-1.7.1/openintro/data/mammogram.rda |only openintro-1.7.1/openintro/data/migraine.rda |only openintro-1.7.1/openintro/data/nba.heights.rda |only openintro-1.7.1/openintro/data/nuclear.survey.rda |only openintro-1.7.1/openintro/data/offshore.drilling.rda |only openintro-1.7.1/openintro/data/orings.rda |only openintro-1.7.1/openintro/data/outliers.rda |only openintro-1.7.1/openintro/data/pm25.2011.durham.rda |only openintro-1.7.1/openintro/data/poker.rda |binary openintro-1.7.1/openintro/data/prof.evaltns.beauty.public.rda |only openintro-1.7.1/openintro/data/res.demo.1.rda |only openintro-1.7.1/openintro/data/res.demo.2.rda |only openintro-1.7.1/openintro/data/sat.improve.rda |only openintro-1.7.1/openintro/data/scotus_healthcare.rda |only openintro-1.7.1/openintro/data/sinusitis.rda |only openintro-1.7.1/openintro/data/sleep.deprivation.rda |only openintro-1.7.1/openintro/data/sp500.seq.rda |only openintro-1.7.1/openintro/data/speed.gender.height.rda |only openintro-1.7.1/openintro/data/stanford.rda |only openintro-1.7.1/openintro/data/starbucks.rda |only openintro-1.7.1/openintro/data/stats.scores.rda |only openintro-1.7.1/openintro/data/stem.cell.rda |only openintro-1.7.1/openintro/data/stem.cells.rda |only openintro-1.7.1/openintro/data/stent30.rda |only openintro-1.7.1/openintro/data/stent365.rda |only openintro-1.7.1/openintro/data/student.housing.rda |only openintro-1.7.1/openintro/data/student.sleep.rda |only openintro-1.7.1/openintro/data/sulphinpyrazone.rda |only openintro-1.7.1/openintro/data/supreme.court.rda |only openintro-1.7.1/openintro/data/toohey.rda |only openintro-1.7.1/openintro/data/tourism.rda |only openintro-1.7.1/openintro/data/toy.anova.rda |only openintro-1.7.1/openintro/data/transplant.rda |only openintro-1.7.1/openintro/data/trees.rda |only openintro-1.7.1/openintro/data/unemploy.pres.rda |only openintro-1.7.1/openintro/data/urban.owner.rda |only openintro-1.7.1/openintro/data/urban.rural.pop.rda |only openintro-1.7.1/openintro/data/xom.rda |only openintro-1.7.1/openintro/data/yawn.rda |only openintro-1.7.1/openintro/data/yrbss.rda |only openintro-1.7.1/openintro/data/yrbss.samp.rda |only openintro-1.7.1/openintro/man/ArrowLines.Rd |only openintro-1.7.1/openintro/man/Braces.Rd |only openintro-1.7.1/openintro/man/CCP.Rd |only openintro-1.7.1/openintro/man/CT2DF.Rd |only openintro-1.7.1/openintro/man/ChiSquareTail.Rd |only openintro-1.7.1/openintro/man/MLB.Rd | 21 openintro-1.7.1/openintro/man/MosaicPlot.Rd |only openintro-1.7.1/openintro/man/PlotWLine.Rd |only openintro-1.7.1/openintro/man/WriteTable.Rd |only openintro-1.7.1/openintro/man/acs12.Rd |only openintro-1.7.1/openintro/man/ami.occurrences.Rd |only openintro-1.7.1/openintro/man/association.1.3.Rd |only openintro-1.7.1/openintro/man/association.4.6.Rd |only openintro-1.7.1/openintro/man/association.7.12.Rd |only openintro-1.7.1/openintro/man/assortive.mating.Rd |only openintro-1.7.1/openintro/man/avandia.Rd |only openintro-1.7.1/openintro/man/babies.Rd |only openintro-1.7.1/openintro/man/babies.crawl.Rd |only openintro-1.7.1/openintro/man/bac.Rd |only openintro-1.7.1/openintro/man/books.Rd |only openintro-1.7.1/openintro/man/burger.Rd |only openintro-1.7.1/openintro/man/cancer.in.dogs.Rd |only openintro-1.7.1/openintro/man/cards.Rd |only openintro-1.7.1/openintro/man/cats.Rd |only openintro-1.7.1/openintro/man/cherry.Rd |only openintro-1.7.1/openintro/man/chick.wts.Rd |only openintro-1.7.1/openintro/man/china.Rd |only openintro-1.7.1/openintro/man/corr.match.Rd |only openintro-1.7.1/openintro/man/county.Rd | 2 openintro-1.7.1/openintro/man/county.w.sm.ban.Rd |only openintro-1.7.1/openintro/man/countyComplete.Rd | 4 openintro-1.7.1/openintro/man/cpr.Rd |only openintro-1.7.1/openintro/man/diamonds.Rd |only openintro-1.7.1/openintro/man/dlsegments.Rd |only openintro-1.7.1/openintro/man/dotPlotStack.Rd |only openintro-1.7.1/openintro/man/dream.Rd |only openintro-1.7.1/openintro/man/drug.use.Rd |only openintro-1.7.1/openintro/man/ebola.survey.Rd |only openintro-1.7.1/openintro/man/edaPlot.Rd | 12 openintro-1.7.1/openintro/man/elmhurst.Rd |only openintro-1.7.1/openintro/man/epa2012.Rd |only openintro-1.7.1/openintro/man/exams.Rd |only openintro-1.7.1/openintro/man/fadeColor.Rd | 6 openintro-1.7.1/openintro/man/fcid.Rd |only openintro-1.7.1/openintro/man/fheights.Rd |only openintro-1.7.1/openintro/man/full.body.scan.Rd |only openintro-1.7.1/openintro/man/gear.company.Rd |only openintro-1.7.1/openintro/man/gender.discrimination.Rd |only openintro-1.7.1/openintro/man/global.warming.pew.Rd |only openintro-1.7.1/openintro/man/goog.Rd |only openintro-1.7.1/openintro/man/gov.poll.Rd |only openintro-1.7.1/openintro/man/gpa.Rd |only openintro-1.7.1/openintro/man/gpa_study_hours.Rd |only openintro-1.7.1/openintro/man/gsearch.Rd |only openintro-1.7.1/openintro/man/health_coverage.Rd |only openintro-1.7.1/openintro/man/healthcare.law.survey.Rd |only openintro-1.7.1/openintro/man/healthcare.survey.Rd |only openintro-1.7.1/openintro/man/histPlot.Rd | 8 openintro-1.7.1/openintro/man/house.Rd | 2 openintro-1.7.1/openintro/man/houseRace10.Rd | 6 openintro-1.7.1/openintro/man/housing.Rd |only openintro-1.7.1/openintro/man/husbands.wives.Rd |only openintro-1.7.1/openintro/man/immigration.Rd |only openintro-1.7.1/openintro/man/iris.Rd |only openintro-1.7.1/openintro/man/jury.Rd |only openintro-1.7.1/openintro/man/leg_mari.Rd |only openintro-1.7.1/openintro/man/linResPlot.Rd |only openintro-1.7.1/openintro/man/loop.Rd | 4 openintro-1.7.1/openintro/man/lsegments.Rd |only openintro-1.7.1/openintro/man/male.heights.Rd |only openintro-1.7.1/openintro/man/mammogram.Rd |only openintro-1.7.1/openintro/man/marioKart.Rd | 28 openintro-1.7.1/openintro/man/migraine.Rd |only openintro-1.7.1/openintro/man/nba.heights.Rd |only openintro-1.7.1/openintro/man/normTail.Rd | 71 openintro-1.7.1/openintro/man/nuclear.survey.Rd |only openintro-1.7.1/openintro/man/offshore.drilling.Rd |only openintro-1.7.1/openintro/man/openintro-package.Rd | 4 openintro-1.7.1/openintro/man/orings.Rd |only openintro-1.7.1/openintro/man/oscars.Rd | 2 openintro-1.7.1/openintro/man/outliers.Rd |only openintro-1.7.1/openintro/man/pm25.2011.durham.Rd |only openintro-1.7.1/openintro/man/prof.evaltns.beauty.public.Rd |only openintro-1.7.1/openintro/man/res.demo.1.Rd |only openintro-1.7.1/openintro/man/res.demo.2.Rd |only openintro-1.7.1/openintro/man/sat.improve.Rd |only openintro-1.7.1/openintro/man/scotus_healthcare.Rd |only openintro-1.7.1/openintro/man/sinusitis.Rd |only openintro-1.7.1/openintro/man/sleep.deprivation.Rd |only openintro-1.7.1/openintro/man/smoking.Rd | 2 openintro-1.7.1/openintro/man/sp500.seq.Rd |only openintro-1.7.1/openintro/man/speed.gender.height.Rd |only openintro-1.7.1/openintro/man/stanford.Rd |only openintro-1.7.1/openintro/man/starbucks.Rd |only openintro-1.7.1/openintro/man/stats.scores.Rd |only openintro-1.7.1/openintro/man/stem.cell.Rd |only openintro-1.7.1/openintro/man/stem.cells.Rd |only openintro-1.7.1/openintro/man/stent30.Rd |only openintro-1.7.1/openintro/man/stent365.Rd |only openintro-1.7.1/openintro/man/student.housing.Rd |only openintro-1.7.1/openintro/man/student.sleep.Rd |only openintro-1.7.1/openintro/man/sulphinpyrazone.Rd |only openintro-1.7.1/openintro/man/supreme.court.Rd |only openintro-1.7.1/openintro/man/toohey.Rd |only openintro-1.7.1/openintro/man/tourism.Rd |only openintro-1.7.1/openintro/man/toy.anova.Rd |only openintro-1.7.1/openintro/man/transplant.Rd |only openintro-1.7.1/openintro/man/treeDiag.Rd | 7 openintro-1.7.1/openintro/man/trees.Rd |only openintro-1.7.1/openintro/man/unemploy.pres.Rd |only openintro-1.7.1/openintro/man/urban.owner.Rd |only openintro-1.7.1/openintro/man/urban.rural.pop.Rd |only openintro-1.7.1/openintro/man/xom.Rd |only openintro-1.7.1/openintro/man/yawn.Rd |only openintro-1.7.1/openintro/man/yrbss.Rd |only openintro-1.7.1/openintro/man/yrbss.samp.Rd |only 235 files changed, 1525 insertions(+), 918 deletions(-)
Title: Tools to Format Numbers for Publication
Description: Format numbers and plots for publication; includes the removal of leading zeros,
standardization of number of digits, addition of affixes, and a p-value formatter.
These tools combine the functionality of several 'base' functions such as paste(),
format(), and sprintf() into specific use case functions that are named in a way
that is consistent with usage, making their names easy to remember and easy to
deploy.
Author: Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between numform versions 0.0.5 dated 2017-08-01 and 0.3.0 dated 2017-09-07
DESCRIPTION | 31 +- MD5 | 67 ++++- NAMESPACE | 28 ++ NEWS | 46 +++ R/alignment.R |only R/constants.R |only R/f_12_hour.R |only R/f_abbreviation.R |only R/f_affirm.R |only R/f_comma.R | 2 R/f_date.R |only R/f_denom.R | 5 R/f_logical.R |only R/f_percent.R | 43 +++ R/f_replace.R |only R/f_sign.R | 16 - R/f_state.R |only R/f_title.R |only R/f_weekday.R | 14 - R/f_wrap.R |only R/f_year.R |only R/numform-package.R | 2 R/utils.R | 6 README.md | 421 ++++++++++++++++++++++++++++++------ inst/CITATION | 14 - man/alignment.Rd |only man/constants.Rd |only man/f_12_hour.Rd |only man/f_abbreviation.Rd |only man/f_affirm.Rd |only man/f_comma.Rd | 2 man/f_date.Rd |only man/f_denom.Rd | 3 man/f_logical.Rd |only man/f_percent.Rd | 17 + man/f_replace.Rd |only man/f_sign.Rd | 12 - man/f_state.Rd |only man/f_title.Rd |only man/f_weekday.Rd | 6 man/f_wrap.Rd |only man/f_year.Rd |only man/numform.Rd | 2 tools/figure/unnamed-chunk-13-1.png |binary tools/figure/unnamed-chunk-14-1.png |binary tools/figure/unnamed-chunk-15-1.png |only tools/figure/unnamed-chunk-23-1.png |only tools/figure/unnamed-chunk-24-1.png |only 48 files changed, 597 insertions(+), 140 deletions(-)
Title: Safely Access the RStudio API
Description: Access the RStudio API (if available) and provide informative error
messages when it's not.
Author: JJ Allaire [aut, cre],
Hadley Wickham [aut],
Kevin Ushey [aut],
Gary Ritchie [aut],
RStudio [cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between rstudioapi versions 0.6 dated 2016-06-27 and 0.7 dated 2017-09-07
rstudioapi-0.6/rstudioapi/inst/NEWS |only rstudioapi-0.6/rstudioapi/man/document-mutation.Rd |only rstudioapi-0.6/rstudioapi/man/editor-information.Rd |only rstudioapi-0.7/rstudioapi/DESCRIPTION | 25 +- rstudioapi-0.7/rstudioapi/MD5 | 90 +++++++-- rstudioapi-0.7/rstudioapi/NAMESPACE | 32 +++ rstudioapi-0.7/rstudioapi/NEWS.md |only rstudioapi-0.7/rstudioapi/R/dialogs.R |only rstudioapi-0.7/rstudioapi/R/document-api.R | 64 +++--- rstudioapi-0.7/rstudioapi/R/document-methods.R | 10 + rstudioapi-0.7/rstudioapi/R/stubs.R | 161 ++++++++++++++++- rstudioapi-0.7/rstudioapi/R/templates.R |only rstudioapi-0.7/rstudioapi/R/terminal.R |only rstudioapi-0.7/rstudioapi/R/themes.R |only rstudioapi-0.7/rstudioapi/R/utils.R |only rstudioapi-0.7/rstudioapi/build |only rstudioapi-0.7/rstudioapi/inst/doc |only rstudioapi-0.7/rstudioapi/man/callFun.Rd | 1 rstudioapi-0.7/rstudioapi/man/createProjectTemplate.Rd |only rstudioapi-0.7/rstudioapi/man/document_position.Rd | 4 rstudioapi-0.7/rstudioapi/man/document_range.Rd | 5 rstudioapi-0.7/rstudioapi/man/file-dialogs.Rd |only rstudioapi-0.7/rstudioapi/man/getThemeInfo.Rd |only rstudioapi-0.7/rstudioapi/man/getVersion.Rd | 1 rstudioapi-0.7/rstudioapi/man/hasColorConsole.Rd |only rstudioapi-0.7/rstudioapi/man/hasFun.Rd | 3 rstudioapi-0.7/rstudioapi/man/isAvailable.Rd | 1 rstudioapi-0.7/rstudioapi/man/navigateToFile.Rd | 8 rstudioapi-0.7/rstudioapi/man/persistent-values.Rd |only rstudioapi-0.7/rstudioapi/man/primary_selection.Rd | 1 rstudioapi-0.7/rstudioapi/man/projects.Rd |only rstudioapi-0.7/rstudioapi/man/readPreference.Rd |only rstudioapi-0.7/rstudioapi/man/restartSession.Rd |only rstudioapi-0.7/rstudioapi/man/rstudio-documents.Rd |only rstudioapi-0.7/rstudioapi/man/rstudio-editors.Rd |only rstudioapi-0.7/rstudioapi/man/savePlotAsImage.Rd |only rstudioapi-0.7/rstudioapi/man/sendToConsole.Rd | 1 rstudioapi-0.7/rstudioapi/man/showDialog.Rd |only rstudioapi-0.7/rstudioapi/man/showPrompt.Rd |only rstudioapi-0.7/rstudioapi/man/showQuestion.Rd |only rstudioapi-0.7/rstudioapi/man/terminalActivate.Rd |only rstudioapi-0.7/rstudioapi/man/terminalBuffer.Rd |only rstudioapi-0.7/rstudioapi/man/terminalBusy.Rd |only rstudioapi-0.7/rstudioapi/man/terminalClear.Rd |only rstudioapi-0.7/rstudioapi/man/terminalContext.Rd |only rstudioapi-0.7/rstudioapi/man/terminalCreate.Rd |only rstudioapi-0.7/rstudioapi/man/terminalExecute.Rd |only rstudioapi-0.7/rstudioapi/man/terminalExitCode.Rd |only rstudioapi-0.7/rstudioapi/man/terminalKill.Rd |only rstudioapi-0.7/rstudioapi/man/terminalList.Rd |only rstudioapi-0.7/rstudioapi/man/terminalRunning.Rd |only rstudioapi-0.7/rstudioapi/man/terminalSend.Rd |only rstudioapi-0.7/rstudioapi/man/terminalVisible.Rd |only rstudioapi-0.7/rstudioapi/man/updateDialog.Rd |only rstudioapi-0.7/rstudioapi/man/writePreference.Rd |only rstudioapi-0.7/rstudioapi/vignettes |only 56 files changed, 336 insertions(+), 71 deletions(-)
Title: Automated C Code Generation for 'deSolve', 'bvpSolve' and
'Sundials'
Description: Generates all necessary C functions allowing the user to work with
the compiled-code interface of ode() and bvptwp(). The implementation supports
"forcings" and "events". Also provides functions to symbolically compute
Jacobians, sensitivity equations and adjoint sensitivities being the basis for
sensitivity analysis. Alternatively to 'deSolve', the Sundials 'CVODES' solver is
implemented for computation of model sensitivities.
Author: Daniel Kaschek
Maintainer: Daniel Kaschek <daniel.kaschek@gmail.com>
Diff between cOde versions 0.2.2 dated 2016-05-12 and 0.3 dated 2017-09-07
cOde-0.2.2/cOde/man/loadDLL.Rd |only cOde-0.3/cOde/DESCRIPTION | 24 - cOde-0.3/cOde/MD5 | 119 ++++- cOde-0.3/cOde/NAMESPACE | 4 cOde-0.3/cOde/R/RcppExports.R |only cOde-0.3/cOde/R/cOde.R | 570 +++++++++++++++++++----- cOde-0.3/cOde/R/derivedEquations.R | 21 cOde-0.3/cOde/R/symbolics.R | 2 cOde-0.3/cOde/inst/examples/example2_sundials.R |only cOde-0.3/cOde/inst/examples/example3.R | 2 cOde-0.3/cOde/inst/examples/example4.R | 2 cOde-0.3/cOde/inst/examples/example5.R | 3 cOde-0.3/cOde/inst/include |only cOde-0.3/cOde/man/adjointSymb.Rd | 4 cOde-0.3/cOde/man/bvptwpC.Rd | 3 cOde-0.3/cOde/man/compileAndLoad.Rd |only cOde-0.3/cOde/man/cvodesSyntax.Rd |only cOde-0.3/cOde/man/forcData.Rd | 1 cOde-0.3/cOde/man/funC.Rd | 78 +-- cOde-0.3/cOde/man/getSymbols.Rd | 1 cOde-0.3/cOde/man/jacobianSymb.Rd | 1 cOde-0.3/cOde/man/odeC.Rd | 1 cOde-0.3/cOde/man/oxygenData.Rd | 1 cOde-0.3/cOde/man/prodSymb.Rd | 1 cOde-0.3/cOde/man/reduceSensitivities.Rd | 1 cOde-0.3/cOde/man/replaceOperation.Rd | 1 cOde-0.3/cOde/man/replaceSymbols.Rd | 1 cOde-0.3/cOde/man/sensitivitiesSymb.Rd | 63 ++ cOde-0.3/cOde/man/setForcings.Rd | 1 cOde-0.3/cOde/man/sumSymb.Rd | 1 cOde-0.3/cOde/man/sundialsIncludes.Rd |only cOde-0.3/cOde/man/sundialsJac.Rd |only cOde-0.3/cOde/man/sundialsOde.Rd |only cOde-0.3/cOde/man/sundialsSensOde.Rd |only cOde-0.3/cOde/man/wrap_cvodes.Rd |only cOde-0.3/cOde/src |only 36 files changed, 715 insertions(+), 191 deletions(-)
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston, Andre
Williams, Chris Keefer, Allan Engelhardt, Tony Cooper, Zachary Mayer,
Brenton Kenkel, the R Core Team, Michael Benesty, Reynald Lescarbeau,
Andrew Ziem, Luca Scrucca, Yuan Tang, Can Candan, and Tyler Hunt.
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between caret versions 6.0-76 dated 2017-04-18 and 6.0-77 dated 2017-09-07
DESCRIPTION | 11 MD5 | 92 +- NAMESPACE | 16 R/aaa.R | 1 R/adaptive.R | 350 +++++------ R/classLevels.R | 6 R/confusionMatrix.R | 22 R/createDataPartition.R | 80 ++ R/createModel.R | 1 R/dummyVar.R | 16 R/extractPrediction.R | 35 + R/lift.R | 122 +++ R/misc.R | 292 ++++++++- R/modelLookup.R | 4 R/plsda.R | 96 +-- R/postResample.R | 207 +++--- R/preProcess.R | 84 +- R/prec_rec.R | 17 R/predict.train.R | 75 +- R/predictors.R | 26 R/print.train.R | 9 R/recipes.R |only R/rfe.R | 40 - R/thresholder.R |only R/train.default.R | 913 +++++++++++++++++++++++------ R/trainControl.R | 4 R/varImp.R | 66 +- R/varImp.train.R | 89 -- R/workflows.R | 563 ++++++----------- build/vignette.rds |binary inst/NEWS.Rd | 33 + inst/doc/caret.R | 1 inst/doc/caret.Rnw | 1 inst/doc/caret.pdf |binary inst/models/models.RData |binary man/caret-internal.Rd | 3 man/lift.Rd | 8 man/models.Rd | 329 ++++++---- man/plsda.Rd | 8 man/postResample.Rd | 160 ++--- man/predict.train.Rd | 4 man/thresholder.Rd |only man/train.Rd | 302 ++++++--- man/trainControl.Rd | 2 man/varImp.Rd | 4 tests/testthat/test_confusionMatrix.R | 6 tests/testthat/test_mnLogLoss.R | 24 tests/testthat/test_preProcess_internals.R |only tests/testthat/test_sampling_options.R | 49 - 49 files changed, 2645 insertions(+), 1526 deletions(-)
Title: Rendering Word Documents with R Inline Code
Description: Serves for rendering MS Word documents with R inline code and inserting tables and plots.
Author: Tomas Hovorka
Maintainer: Tomas Hovorka <tomashovorka@seznam.cz>
Diff between WordR versions 0.2.1 dated 2017-08-29 and 0.2.2 dated 2017-09-07
DESCRIPTION | 6 +- MD5 | 35 +++++++------ NEWS.md |only R/WordR.R |only R/addFlexTables.R | 2 R/renderInlineCode.R | 60 +++++++---------------- inst/doc/WordR.Rmd | 66 ++++++++------------------ inst/doc/WordR.html | 78 ++++++++++--------------------- inst/examples/examples.R | 9 --- inst/examples/results/result1.docx |binary inst/examples/results/resultFT.docx |binary inst/examples/results/resultPlots.docx |binary inst/examples/templates/template1.docx |binary inst/examples/templates/templateAll.docx |binary man/WordR.Rd |only man/addFlexTables.Rd | 2 man/renderInlineCode.Rd | 5 - tests/testthat.R | 1 vignettes/WordR.Rmd | 66 ++++++++------------------ vignettes/lineWithCode.gif |binary 20 files changed, 115 insertions(+), 215 deletions(-)
Title: Friendly R Startup Configuration
Description: Adds support for R startup configuration via '.Renviron.d' and '.Rprofile.d' directories in addition to '.Renviron' and '.Rprofile' files. This makes it possible to keep private / secret environment variables separate from other environment variables. It also makes it easier to share specific startup settings by simply copying a file to a directory.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between startup versions 0.6.1 dated 2017-05-17 and 0.7.0 dated 2017-09-07
DESCRIPTION | 10 ++-- MD5 | 48 +++++++++++++--------- NAMESPACE | 1 NEWS | 19 ++++++++ R/api.R | 4 + R/check.R | 20 ++++----- R/install.R | 22 ++++------ R/is_ess.R | 5 -- R/is_rstudio.R | 8 +-- R/is_wine.R | 10 +--- R/renviron_d.R | 2 R/rprofile_d.R | 1 R/startup.R | 86 ++++++++++++++++++++++------------------ R/startup_session_options.R |only R/unload.R | 4 + R/zzz.R |only README.md | 69 +++++++++++++++++++++++++++----- build |only inst/doc |only man/check.Rd | 15 +++--- man/install.Rd | 14 ++---- man/is_rstudio.Rd | 4 - man/is_wine.Rd | 10 ++-- man/startup.Rd | 70 ++++++++++++++++---------------- man/startup_session_options.Rd |only tests/assert-vignettes.R |only tests/startup_session_options.R |only vignettes |only 28 files changed, 253 insertions(+), 169 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Detailed vignettes are available on the fishR website <http://derekogle.com/fishR/>.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derek@derekogle.com>
Diff between FSA versions 0.8.14 dated 2017-07-27 and 0.8.16 dated 2017-09-07
DESCRIPTION | 8 - MD5 | 23 ++--- NEWS.md | 9 +- R/growthModels.R | 7 - R/removal.R | 2 R/residPlot.R | 15 ++- R/srStarts.R | 134 ++++++++++++++++++++++++--------- inst/helpers |only man/removal.Rd | 2 man/residPlot.Rd | 10 ++ man/srStarts.Rd | 30 +++---- tests/testthat/test_StockRecruit_MSG.R | 65 ++++++++++++++++ tests/testthat/test_StockRecruit_OUT.R | 2 13 files changed, 234 insertions(+), 73 deletions(-)
Title: Chronological Bayesian Models Integrating Optically Stimulated
Luminescence and Radiocarbon Age Dating
Description: Bayesian analysis of luminescence data and 14C age estimate. Bayesian models are based on the following publications: Combes, B. & Philippe, A. (2017) <doi:10.1016/j.quageo.2017.02.003> and Combes et al (2015) <doi:10.1016/j.quageo.2015.04.001>. This includes, amongst others, data import, export, application of age models and palaeodose model.
Author: Cla%ire Christophe [aut, cre], Anne Philippe [aut], Sebastian Kreutzer [aut], Guillaume Guerin [aut]
Maintainer: Anne Philippe <anne.philippe@univ-nantes.fr>
Diff between BayLum versions 0.1.0 dated 2017-09-01 and 0.1.1 dated 2017-09-07
DESCRIPTION | 16 +++++++--------- MD5 | 6 +++--- NEWS | 8 +++++++- vignettes/BayLum.Rmd | 3 ++- 4 files changed, 19 insertions(+), 14 deletions(-)
Title: Fingertips Data for Public Health
Description: Fingertips (<http://fingertips.phe.org.uk/>) contains data for many indicators of public health in England. The underlying data is now more easily accessible by making use of the API.
Author: Sebastian Fox [aut, cre],
Julian Flowers [aut, ctb]
Maintainer: Sebastian Fox <sebastian.fox@phe.gov.uk>
Diff between fingertipsR versions 0.1.0 dated 2017-06-17 and 0.1.1 dated 2017-09-07
DESCRIPTION | 21 ++-- MD5 | 56 +++++++----- NAMESPACE | 23 +++++ NEWS.md | 18 +++ R/area_types.R | 66 +++++++++++++- R/data.R |only R/deprivation_decile.R | 4 R/enhancements.R |only R/fingertipsR.R | 15 +++ R/fingertips_data.R | 121 ++++++++++++++++++++------ R/indicator_metadata.R | 23 +++-- R/indicators.R | 16 ++- R/profiles.R | 11 +- R/retrieve_data.R | 70 +++++++++------ R/select_indicators.R |only build/vignette.rds |binary data |only inst/doc/lifeExpectancy.html | 154 +++++++++++++++++----------------- inst/doc/selectIndicatorsRedRed.R |only inst/doc/selectIndicatorsRedRed.Rmd |only inst/doc/selectIndicatorsRedRed.html |only man/area_types.Rd | 8 + man/areatypes_by_indicators.Rd |only man/category_types.Rd |only man/deprivation_decile.Rd | 6 + man/fingertips_data.Rd | 41 +++++++-- man/fingertips_redred.Rd |only man/indicator_areatypes.Rd |only man/indicator_metadata.Rd | 12 ++ man/indicators.Rd | 6 + man/profiles.Rd | 2 man/select_indicators.Rd |only tests/testthat/test-deprivation.R | 4 tests/testthat/test-extract.R | 15 --- vignettes/fingertips_paper_captions.R |only vignettes/selectIndicatorsRedRed.Rmd |only 36 files changed, 481 insertions(+), 211 deletions(-)
Title: Exploratory and Descriptive Event-Based Data Analysis
Description: Functions for exploratory and descriptive analysis of event based data. Provides methods for describing and selecting process data, and for preparing event log data for process mining. Builds on the S3-class for event logs implemented in the package 'bupaR'.
Author: Gert Janssenswillen [aut, cre], Marijke Swennen [ctb]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between edeaR versions 0.7.0 dated 2017-09-05 and 0.7.1 dated 2017-09-07
edeaR-0.7.0/edeaR/R/repeat_selfloop.R |only edeaR-0.7.0/edeaR/R/repetitions_activity.R |only edeaR-0.7.0/edeaR/R/repetitions_case.R |only edeaR-0.7.0/edeaR/R/repetitions_log.R |only edeaR-0.7.0/edeaR/R/repetitions_trace.R |only edeaR-0.7.0/edeaR/R/size_of_selfloops_activity.R |only edeaR-0.7.0/edeaR/R/size_of_selfloops_case.R |only edeaR-0.7.0/edeaR/R/size_of_selfloops_log.R |only edeaR-0.7.0/edeaR/R/size_of_selfloops_trace.R |only edeaR-0.7.1/edeaR/DESCRIPTION | 8 +-- edeaR-0.7.1/edeaR/MD5 | 33 +++++++------- edeaR-0.7.1/edeaR/NAMESPACE | 6 ++ edeaR-0.7.1/edeaR/R/filter_resource_frequency.R |only edeaR-0.7.1/edeaR/R/filter_time_period.R | 4 - edeaR-0.7.1/edeaR/R/number_of_repetitions.R | 8 +-- edeaR-0.7.1/edeaR/R/number_of_selfloops.R | 8 +-- edeaR-0.7.1/edeaR/R/plot.number_of_repetitions.R |only edeaR-0.7.1/edeaR/R/plot.number_of_selfloops.R |only edeaR-0.7.1/edeaR/R/plot.r | 15 ++++++ edeaR-0.7.1/edeaR/R/print.number_of_repetitions.R |only edeaR-0.7.1/edeaR/R/print.number_of_selfloops.R |only edeaR-0.7.1/edeaR/R/rework_functions.R | 43 +++++++------------ edeaR-0.7.1/edeaR/man/filter_resource_frequency.Rd |only edeaR-0.7.1/edeaR/man/plot.Rd | 6 ++ edeaR-0.7.1/edeaR/man/print.number_of_repetitions.Rd |only edeaR-0.7.1/edeaR/man/print.number_of_selfloops.Rd |only 26 files changed, 74 insertions(+), 57 deletions(-)
Title: 'AWS' Java 'SDK' for R
Description: Installs the compiled Java modules of the Amazon Web Services ('AWS') 'SDK' to be used in downstream R packages interacting with 'AWS'. See <https://aws.amazon.com/sdk-for-java> for more information on the 'AWS' 'SDK' for Java.
Author: Gergely Daroczi <daroczig@rapporter.net>
Maintainer: Gergely Daroczi <daroczig@rapporter.net>
Diff between AWR versions 1.11.89 dated 2017-02-13 and 1.11.189 dated 2017-09-07
AWR-1.11.189/AWR/DESCRIPTION | 14 +++++++------- AWR-1.11.189/AWR/MD5 | 7 +++---- AWR-1.11.189/AWR/R/zzz.R | 6 +++--- AWR-1.11.189/AWR/README.md | 10 ++++++++-- AWR-1.11.89/AWR/man |only 5 files changed, 21 insertions(+), 16 deletions(-)
More information about asciiSetupReader at CRAN
Permanent link
Title: Tile Manager
Description: Tools for creating and detecting tiling schemes for raster data sets.
Author: Andrew Plowright
Maintainer: Andrew Plowright <andrew.plowright@alumni.ubc.ca>
Diff between TileManager versions 0.1.11 dated 2017-01-28 and 0.2.0 dated 2017-09-07
DESCRIPTION | 10 +++++----- MD5 | 33 +++++++++++++++++---------------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/NonoverlappingBuffers.R | 6 +++--- R/TileDetector.R | 3 ++- R/TileHandlers.R | 6 +++--- R/TileScheme.R | 24 +++++++++++++++++++----- R/tileScheme-methods.R |only man/CHMdemo.Rd | 1 - man/NonoverlappingBuffers.Rd | 3 +-- man/TempTiles.Rd | 1 - man/TileApply.Rd | 5 ++--- man/TileDetector.Rd | 3 +-- man/TileInput.Rd | 1 - man/TileScheme.Rd | 15 ++++++++++++--- man/removeTempTiles.Rd | 1 - tests/testthat/test_TileScheme.R | 6 +++++- 18 files changed, 75 insertions(+), 48 deletions(-)
Title: SIMEX- And MCSIMEX-Algorithm for Measurement Error Models
Description: Implementation of the SIMEX-Algorithm by Cook & Stefanski and
MCSIMEX by Küchenhoff, Mwalili & Lesaffre.
Author: Wolfgang Lederer <Wolfgang.Lederer@gmail.com>, Heidi Seibold
<heidi.bold@gmail.com>, Helmut Küchenhoff <Kuechenhoff@stat.uni-muenchen.de>
Maintainer: Wolfgang Lederer <Wolfgang.Lederer@gmail.com>
Diff between simex versions 1.5 dated 2013-05-06 and 1.7 dated 2017-09-07
simex-1.5/simex/R/build.mc.matrix.R |only simex-1.5/simex/R/check.mc.matrix.R |only simex-1.5/simex/R/construct.s.R |only simex-1.5/simex/R/extract.covmat.R |only simex-1.5/simex/R/fit.logl.R |only simex-1.5/simex/R/fit.nls.R |only simex-1.5/simex/R/plot.mcsimex.R |only simex-1.5/simex/R/plot.simex.R |only simex-1.5/simex/R/predict.mcsimex.R |only simex-1.5/simex/R/predict.simex.R |only simex-1.5/simex/R/print.mcsimex.R |only simex-1.5/simex/R/print.simex.R |only simex-1.5/simex/R/print.summary.mcsimex.R |only simex-1.5/simex/R/print.summary.simex.R |only simex-1.5/simex/R/refit.mcsimex.R |only simex-1.5/simex/R/refit.simex.R |only simex-1.5/simex/R/summary.mcsimex.R |only simex-1.5/simex/R/summary.simex.R |only simex-1.5/simex/man/build.mc.matrix.Rd |only simex-1.5/simex/simex-Ex.R |only simex-1.7/simex/DESCRIPTION | 29 - simex-1.7/simex/MD5 | 52 - simex-1.7/simex/NAMESPACE | 57 +- simex-1.7/simex/NEWS | 19 simex-1.7/simex/R/diag.block.R | 61 +- simex-1.7/simex/R/mc.matrix.R |only simex-1.7/simex/R/mcsimex.R | 786 ++++++++++++++++++++---------- simex-1.7/simex/R/misclass.R | 98 ++- simex-1.7/simex/R/refit.R | 7 simex-1.7/simex/R/simex-internal.R | 285 ++++------ simex-1.7/simex/R/simex.R | 457 +++++++++++++++-- simex-1.7/simex/R/utility_functions.R |only simex-1.7/simex/README.md |only simex-1.7/simex/man/diag.block.Rd | 40 - simex-1.7/simex/man/mc.matrix.Rd |only simex-1.7/simex/man/mcsimex.Rd | 269 ++++++---- simex-1.7/simex/man/misclass.Rd | 51 - simex-1.7/simex/man/simex-package.Rd | 308 +++++------ simex-1.7/simex/man/simex.Rd | 258 +++++---- 39 files changed, 1764 insertions(+), 1013 deletions(-)
Title: Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Description: Operations on triangular meshes based on 'VCGLIB'. This package
integrates nicely with the R-package 'rgl' to render the meshes processed by
'Rvcg'. The Visualization and Computer Graphics Library (VCG for short) is
an open source portable C++ templated library for manipulation, processing
and displaying with OpenGL of triangle and tetrahedral meshes. The library,
composed by more than 100k lines of code, is released under the GPL license,
and it is the base of most of the software tools of the Visual Computing Lab of
the Italian National Research Council Institute ISTI <http://vcg.isti.cnr.it>,
like 'metro' and 'MeshLab'. The 'VCGLIB' source is pulled from trunk
<https://github.com/cnr-isti-vclab/vcglib> and patched to work with options
determined by the configure script as well as to work with the header files
included by 'RcppEigen'.
Author: Stefan Schlager [aut, cre, cph],
Girinon Francois [ctb]
Maintainer: Stefan Schlager <zarquon42@gmail.com>
Diff between Rvcg versions 0.16 dated 2017-04-06 and 0.17 dated 2017-09-07
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ R/Rvcg-package.R | 4 ++-- R/vcgIsolated.r | 1 - R/vcgPlyWrite.r | 8 ++++---- inst/NEWS.Rd | 11 +++++++++++ man/Rvcg-package.Rd | 4 ++-- man/vcgIsolated.Rd | 1 - man/vcgObjWrite.Rd | 2 +- man/vcgStlWrite.Rd | 2 +- man/vcgWrlWrite.Rd | 2 +- src/RvcgKD.h | 5 ++++- src/vcglib/vcg/complex/algorithms/refine_loop.h | 12 ++++++------ 13 files changed, 48 insertions(+), 36 deletions(-)
Title: 'MsgPack' C++ Header Files
Description: 'MessagePack' is an efficient binary serialization format.
It lets you exchange data among multiple languages like 'JSON'. But it is
faster and smaller. Small integers are encoded into a single byte, and
typical short strings require only one extra byte in addition to the strings
themselves. This package provides headers from the 'msgpack-c'
implementation for C and C++(11) for use by R, particularly 'Rcpp'. The
included 'msgpack-c' headers are licensed under the Boost Software License
(Version 1.0); the code added by this package as well the R integration are
licensed under the GPL (>= 2). See the files 'COPYRIGHTS' and 'AUTHORS' for
a full list of copyright holders and contributors to 'msgpack-c'.
Author: Travers Ching and Dirk Eddelbuettel; the authors and contributors of MsgPack
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppMsgPack versions 0.1.1 dated 2017-06-12 and 0.2.0 dated 2017-09-07
RcppMsgPack-0.1.1/RcppMsgPack/inst/include/msgpack/adaptor/detail |only RcppMsgPack-0.1.1/RcppMsgPack/inst/include/msgpack/detail |only RcppMsgPack-0.1.1/RcppMsgPack/inst/include/msgpack/v1/type.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/ChangeLog | 63 RcppMsgPack-0.2.0/RcppMsgPack/DESCRIPTION | 17 RcppMsgPack-0.2.0/RcppMsgPack/MD5 | 591 +-- RcppMsgPack-0.2.0/RcppMsgPack/NAMESPACE | 8 RcppMsgPack-0.2.0/RcppMsgPack/R/RcppExports.R | 12 RcppMsgPack-0.2.0/RcppMsgPack/R/functions.r |only RcppMsgPack-0.2.0/RcppMsgPack/README.md | 43 RcppMsgPack-0.2.0/RcppMsgPack/build |only RcppMsgPack-0.2.0/RcppMsgPack/inst/COPYRIGHTS | 1 RcppMsgPack-0.2.0/RcppMsgPack/inst/NEWS.Rd | 17 RcppMsgPack-0.2.0/RcppMsgPack/inst/doc |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/adaptor_base.hpp | 74 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/array_ref.hpp | 165 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/bool.hpp | 55 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/boost/fusion.hpp | 147 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/boost/msgpack_variant.hpp | 420 -- RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/boost/optional.hpp | 85 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/boost/string_ref.hpp | 76 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/boost/string_view.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/carray.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/char_ptr.hpp | 146 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/check_container_size.hpp | 56 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/array.hpp | 132 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/array_char.hpp | 83 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/array_unsigned_char.hpp | 83 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/forward_list.hpp | 88 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/reference_wrapper.hpp | 62 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/shared_ptr.hpp | 76 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/tuple.hpp | 170 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/unique_ptr.hpp | 76 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/unordered_map.hpp | 176 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp11/unordered_set.hpp | 166 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/cpp17 |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/define.hpp | 20 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/define_decl.hpp | 1 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/deque.hpp | 99 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/ext.hpp | 226 - RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/fixint.hpp | 289 - RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/float.hpp | 112 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/int.hpp | 421 -- RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/list.hpp | 95 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/map.hpp | 304 - RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/msgpack_tuple.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/nil.hpp | 79 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/pair.hpp | 72 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/raw.hpp | 95 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/set.hpp | 177 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/size_equal_only.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/size_equal_only_decl.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/string.hpp | 75 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/tr1/unordered_map.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/tr1/unordered_set.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/v4raw.hpp | 95 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/vector.hpp | 110 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/vector_bool.hpp | 77 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/vector_char.hpp | 102 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/adaptor/vector_unsigned_char.hpp | 102 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/cpp_config.hpp | 115 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/fbuffer.h | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/fbuffer.hpp | 53 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/gcc_atomic.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/iterator.hpp | 26 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/meta.hpp | 39 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/object.h | 5 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/object.hpp | 833 ---- RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/object_fwd.hpp | 262 - RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/pack.hpp | 1596 -------- RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/parse_return.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/alpha.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/arm.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/blackfin.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/convex.h | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/ia64.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/m68k.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/mips.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/parisc.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/ppc.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/pyramid.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/rs6k.h | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/sparc.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/superh.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/sys370.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/sys390.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/x86.h | 12 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/x86/32.h | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/x86/64.h | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/architecture/z.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/borland.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/clang.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/comeau.h | 9 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/compaq.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/diab.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/digitalmars.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/dignus.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/edg.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/ekopath.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/gcc.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/gcc_xml.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/greenhills.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/hp_acc.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/iar.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/ibm.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/intel.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/kai.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/llvm.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/metaware.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/metrowerks.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/microtec.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/mpw.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/palm.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/pgi.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/sgi_mipspro.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/sunpro.h | 25 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/tendra.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/visualc.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/compiler/watcom.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/detail/_cassert.h | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/detail/_exception.h | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/detail/test_def.h |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/hardware |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/hardware.h |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/language.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/language/objc.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/language/stdc.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/language/stdcpp.h | 19 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/c.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/c/gnu.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/c/uc.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/c/vms.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/c/zos.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/cxx.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/dinkumware.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/libcomo.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/modena.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/msl.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/roguewave.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/sgi.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/stdcpp3.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/stlport.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/library/std/vacpp.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/make.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/aix.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/amigaos.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/android.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/beos.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/bsd.h | 14 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/bsd/bsdi.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/bsd/dragonfly.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/bsd/free.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/bsd/net.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/bsd/open.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/cygwin.h | 9 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/haiku.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/hpux.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/ios.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/irix.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/linux.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/macos.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/os400.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/qnxnto.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/solaris.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/unix.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/vms.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/os/windows.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/other.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/other/endian.h | 9 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/platform.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/platform/mingw.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/platform/windows_desktop.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/platform/windows_phone.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/platform/windows_runtime.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/platform/windows_store.h | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/version.h | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/predef/version_number.h | 3 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/arithmetic/dec.hpp | 1 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/config/config.hpp | 7 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/facilities/identity.hpp | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/library.hpp | 1 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/repetition/for.hpp | 20 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/seq/detail/is_empty.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/seq/for_each.hpp | 67 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/seq/for_each_i.hpp | 68 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/seq/replace.hpp | 20 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/seq/rest_n.hpp | 20 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/seq/size.hpp | 1 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/preprocessor/tuple/eat.hpp | 11 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/sbuffer.hpp | 143 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/sysdep.h | 68 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/type.hpp | 10 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/unpack.h | 13 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/unpack.hpp | 1958 ---------- RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/unpack_exception.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/unpack_template.h | 52 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/adaptor_base.hpp | 50 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/adaptor_base_decl.hpp | 31 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/array_ref.hpp | 156 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/array_ref_decl.hpp | 18 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/boost/fusion.hpp | 55 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/boost/msgpack_variant.hpp | 51 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/boost/string_view.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/carray.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/char_ptr.hpp | 68 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/check_container_size_decl.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp11/array.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp11/array_char.hpp | 13 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp11/array_unsigned_char.hpp | 13 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp11/forward_list.hpp | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp11/shared_ptr.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp11/tuple.hpp | 9 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp11/unique_ptr.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp11/unordered_map.hpp | 12 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp11/unordered_set.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/cpp17 |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/deque.hpp | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/detail/cpp03_define_array.hpp | 1122 +++++ RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/detail/cpp03_define_map.hpp | 36 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/detail/cpp03_msgpack_tuple.hpp | 1715 +++++--- RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/detail/cpp11_define_array.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/detail/cpp11_define_map.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/detail/cpp11_msgpack_tuple.hpp | 104 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/detail/cpp11_msgpack_tuple_decl.hpp | 44 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/ext.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/float.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/int.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/list.hpp | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/map.hpp | 42 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/pair.hpp | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/raw.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/set.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/size_equal_only.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/size_equal_only_decl.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/string.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/tr1/unordered_map.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/tr1/unordered_set.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/v4raw.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/vector.hpp | 12 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/vector_bool.hpp | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/vector_char.hpp | 38 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/adaptor/vector_unsigned_char.hpp | 38 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/cpp_config.hpp | 54 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/cpp_config_decl.hpp | 38 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/detail/cpp03_zone.hpp | 82 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/detail/cpp03_zone_decl.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/detail/cpp11_zone.hpp | 58 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/detail/cpp11_zone_decl.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/meta.hpp | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/meta_decl.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/object.hpp | 115 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/object_decl.hpp | 3 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/object_fwd.hpp | 37 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/object_fwd_decl.hpp | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/pack.hpp | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/parse_return.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/sbuffer.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/unpack.hpp | 210 - RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/unpack_decl.hpp | 75 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/unpack_exception.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/vrefbuffer.hpp | 10 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v1/zbuffer.hpp | 8 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/adaptor/adaptor_base.hpp | 35 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/adaptor/adaptor_base_decl.hpp | 15 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/adaptor/nil_decl.hpp | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/adaptor/size_equal_only_decl.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/cpp_config_decl.hpp | 15 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/create_object_visitor.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/meta_decl.hpp | 4 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/null_visitor.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/object.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/object_decl.hpp | 12 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/object_fwd.hpp | 46 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/object_fwd_decl.hpp | 5 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/parse.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/parse_return.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/unpack.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/unpack_decl.hpp | 248 + RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/x3_parse.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/v2/x3_unpack.hpp |only RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/version_master.h | 6 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/versioning.hpp | 10 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/vrefbuffer.h | 2 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/vrefbuffer.hpp | 283 - RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/zbuffer.hpp | 156 RcppMsgPack-0.2.0/RcppMsgPack/inst/include/msgpack/zone.hpp | 10 RcppMsgPack-0.2.0/RcppMsgPack/man/RcppMsgPack-package.Rd | 36 RcppMsgPack-0.2.0/RcppMsgPack/man/arrayEx.Rd | 1 RcppMsgPack-0.2.0/RcppMsgPack/man/enumEx.Rd | 1 RcppMsgPack-0.2.0/RcppMsgPack/man/msgpack_format.Rd |only RcppMsgPack-0.2.0/RcppMsgPack/man/msgpack_map.Rd |only RcppMsgPack-0.2.0/RcppMsgPack/man/msgpack_pack.Rd |only RcppMsgPack-0.2.0/RcppMsgPack/man/msgpack_simplify.Rd |only RcppMsgPack-0.2.0/RcppMsgPack/man/msgpack_unpack.Rd |only RcppMsgPack-0.2.0/RcppMsgPack/src/RcppExports.cpp | 32 RcppMsgPack-0.2.0/RcppMsgPack/src/c_pack.cpp |only RcppMsgPack-0.2.0/RcppMsgPack/src/c_unpack.cpp |only RcppMsgPack-0.2.0/RcppMsgPack/src/example1.cpp | 5 RcppMsgPack-0.2.0/RcppMsgPack/src/example2.cpp | 7 RcppMsgPack-0.2.0/RcppMsgPack/tests/tests.r |only RcppMsgPack-0.2.0/RcppMsgPack/vignettes |only 307 files changed, 4842 insertions(+), 12358 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre],
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-6 dated 2016-07-14 and 1.4-7 dated 2017-09-07
DESCRIPTION | 8 +++---- MD5 | 24 +++++++++++----------- R/expressions.R | 43 ++++++++++++++++++++++++++++++++++------- build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary inst/NEWS | 5 ++++ inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary man/methods.Rd | 4 ++- man/mmm.Rd | 2 - tests/bugfix.Rout.save | 16 +++++++-------- 13 files changed, 69 insertions(+), 33 deletions(-)
Title: Tools for Management of Survey Data and for the Presentation of
Analysis Results
Description: One of the aims of this package is to make life easier for
R users who deal with survey data sets. It provides an
infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) 'SPSS' and
'Stata' files. Further, it provides functionality to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>
Diff between memisc versions 0.99.13.2 dated 2017-07-29 and 0.99.14.1 dated 2017-09-07
memisc-0.99.13.2/memisc/R/expand.R |only memisc-0.99.13.2/memisc/R/yz-getSummary-mer.R |only memisc-0.99.14.1/memisc/DESCRIPTION | 10 memisc-0.99.14.1/memisc/MD5 | 49 - memisc-0.99.14.1/memisc/NAMESPACE | 3 memisc-0.99.14.1/memisc/R/inflate.R |only memisc-0.99.14.1/memisc/R/mtable-format-latex.R | 9 memisc-0.99.14.1/memisc/R/mtable-format-print.R | 62 - memisc-0.99.14.1/memisc/R/mtable-manip.R | 152 ++- memisc-0.99.14.1/memisc/R/mtable.R | 433 ++++------ memisc-0.99.14.1/memisc/R/toLatex-dataframe.R | 18 memisc-0.99.14.1/memisc/R/toLatex-ftable-matrix.R | 2 memisc-0.99.14.1/memisc/R/toLatex-tools.R |only memisc-0.99.14.1/memisc/R/tolatex-ftable.R | 2 memisc-0.99.14.1/memisc/R/tolatex-matrix.R | 2 memisc-0.99.14.1/memisc/R/xx-getSummary.R |only memisc-0.99.14.1/memisc/R/yy-mtable-ext-AchimZeileis.R | 31 memisc-0.99.14.1/memisc/R/yy-mtable-ext-ChristopherNLawrence.R | 28 memisc-0.99.14.1/memisc/R/yy-mtable-ext-DaveAtkins.R | 124 -- memisc-0.99.14.1/memisc/R/yy-mtable-ext-JasonWMorgan.R | 110 +- memisc-0.99.14.1/memisc/R/yz-getSummary-merMod.R | 81 + memisc-0.99.14.1/memisc/inst/ChangeLog | 41 memisc-0.99.14.1/memisc/inst/NEWS.Rd | 2 memisc-0.99.14.1/memisc/inst/doc/anes48.html | 160 +-- memisc-0.99.14.1/memisc/inst/doc/mtable-html.html | 24 memisc-0.99.14.1/memisc/man/getSummary.Rd | 6 memisc-0.99.14.1/memisc/man/mtable.Rd | 2 memisc-0.99.14.1/memisc/src/memisc.h | 7 28 files changed, 750 insertions(+), 608 deletions(-)
Title: Dependencies for the 'jamovi' Framework
Description: A framework for creating rich interactive analyses for the jamovi
platform (see <https://www.jamovi.org> for more information).
Author: Jonathon Love
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmvcore versions 0.7.1 dated 2017-08-05 and 0.8 dated 2017-09-07
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- R/analysis.R | 7 ++++++- R/array.R | 6 +++++- R/column.R | 17 ++++++++++++----- R/group.R | 2 +- R/image.R | 11 +---------- R/options.R | 14 +++++++++++++- R/protobuf.R | 10 ++++++---- R/results.R | 2 +- R/table.R | 8 ++++++-- tests/testthat/test-profiletable.R |only 12 files changed, 66 insertions(+), 40 deletions(-)
Title: Fit a Penalized Constrained Continuation Ratio Model for
Predicting an Ordinal Response
Description: Penalized methods are useful for fitting over-parameterized models. This package includes functions for restructuring an ordinal
response dataset for fitting continuation ratio models for datasets where the number of covariates exceeds the sample size or when
there is collinearity among the covariates. The glmnet fitting algorithm is used to fit the continuation ratio model after data restructuring.
Author: Kellie J. Archer
Maintainer: Kellie J. Archer <archer.43@osu.edu>
Diff between glmnetcr versions 1.0.2 dated 2014-01-03 and 1.0.3 dated 2017-09-07
glmnetcr-1.0.2/glmnetcr/R/coef.glmnet.cr.R |only glmnetcr-1.0.2/glmnetcr/R/fitted.glmnet.cr.R |only glmnetcr-1.0.2/glmnetcr/R/glmnet.cr.R |only glmnetcr-1.0.2/glmnetcr/R/nonzero.glmnet.cr.R |only glmnetcr-1.0.2/glmnetcr/R/plot.glmnet.cr.R |only glmnetcr-1.0.2/glmnetcr/R/predict.glmnet.cr.R |only glmnetcr-1.0.2/glmnetcr/R/print.glmnet.cr.R |only glmnetcr-1.0.2/glmnetcr/R/select.glmnet.cr.R |only glmnetcr-1.0.2/glmnetcr/man/coef.glmnet.cr.Rd |only glmnetcr-1.0.2/glmnetcr/man/fitted.glmnet.cr.Rd |only glmnetcr-1.0.2/glmnetcr/man/glmnet.cr.Rd |only glmnetcr-1.0.2/glmnetcr/man/nonzero.glmnet.cr.Rd |only glmnetcr-1.0.2/glmnetcr/man/plot.glmnet.cr.Rd |only glmnetcr-1.0.2/glmnetcr/man/predict.glmnet.cr.Rd |only glmnetcr-1.0.2/glmnetcr/man/print.glmnet.cr.Rd |only glmnetcr-1.0.2/glmnetcr/man/select.glmnet.cr.Rd |only glmnetcr-1.0.3/glmnetcr/DESCRIPTION | 20 +++---- glmnetcr-1.0.3/glmnetcr/MD5 | 59 ++++++++++++----------- glmnetcr-1.0.3/glmnetcr/NAMESPACE | 15 +++-- glmnetcr-1.0.3/glmnetcr/R/coef.glmnetcr.R |only glmnetcr-1.0.3/glmnetcr/R/cr.backward.R | 6 +- glmnetcr-1.0.3/glmnetcr/R/cr.forward.R | 6 +- glmnetcr-1.0.3/glmnetcr/R/fitted.glmnetcr.R |only glmnetcr-1.0.3/glmnetcr/R/glmnetcr.R |only glmnetcr-1.0.3/glmnetcr/R/nonzero.glmnetcr.R |only glmnetcr-1.0.3/glmnetcr/R/plot.glmnetcr.R |only glmnetcr-1.0.3/glmnetcr/R/predict.glmnetcr.R |only glmnetcr-1.0.3/glmnetcr/R/print.glmnetcr.R |only glmnetcr-1.0.3/glmnetcr/R/select.glmnetcr.R |only glmnetcr-1.0.3/glmnetcr/build |only glmnetcr-1.0.3/glmnetcr/data/diabetes.rda |binary glmnetcr-1.0.3/glmnetcr/inst/CITATION |only glmnetcr-1.0.3/glmnetcr/inst/NEWS.Rd |only glmnetcr-1.0.3/glmnetcr/inst/doc/glmnetcr.R | 38 +++++++------- glmnetcr-1.0.3/glmnetcr/inst/doc/glmnetcr.Rnw | 49 +++++++++---------- glmnetcr-1.0.3/glmnetcr/inst/doc/glmnetcr.pdf |binary glmnetcr-1.0.3/glmnetcr/man/coef.glmnetcr.Rd |only glmnetcr-1.0.3/glmnetcr/man/cr.backward.Rd | 9 +-- glmnetcr-1.0.3/glmnetcr/man/cr.forward.Rd | 9 +-- glmnetcr-1.0.3/glmnetcr/man/fitted.glmnetcr.Rd |only glmnetcr-1.0.3/glmnetcr/man/glmnetcr-package.Rd | 21 +++----- glmnetcr-1.0.3/glmnetcr/man/glmnetcr.Rd |only glmnetcr-1.0.3/glmnetcr/man/nonzero.glmnetcr.Rd |only glmnetcr-1.0.3/glmnetcr/man/plot.glmnetcr.Rd |only glmnetcr-1.0.3/glmnetcr/man/predict.glmnetcr.Rd |only glmnetcr-1.0.3/glmnetcr/man/print.glmnetcr.Rd |only glmnetcr-1.0.3/glmnetcr/man/select.glmnetcr.Rd |only glmnetcr-1.0.3/glmnetcr/vignettes/glmnetcr.Rnw | 49 +++++++++---------- 48 files changed, 145 insertions(+), 136 deletions(-)
Title: Fit a Penalized Continuation Ratio Model for Predicting an
Ordinal Response
Description: Provides a function for fitting a penalized constrained continuation ratio model using the glmpath algorithm and methods for extracting coefficient estimates, predicted class, class probabilities, and plots.See Kellie J. Archer, Andre A.A. Williams (2012) L1 Penalized Continuation Ratio Models for Ordinal Response Prediction Using High-dimensional Datasets, Statistics in Medicine 31, 1464-1474 <doi:10.1002/sim.4484>.
Author: Kellie J. Archer
Maintainer: Kellie J. Archer <archer.43@osu.edu>
Diff between glmpathcr versions 1.0.3 dated 2014-01-03 and 1.0.4 dated 2017-09-07
glmpathcr-1.0.3/glmpathcr/R/coef.glmpath.cr.R |only glmpathcr-1.0.3/glmpathcr/R/fitted.glmpath.cr.R |only glmpathcr-1.0.3/glmpathcr/R/glmpath.cr.R |only glmpathcr-1.0.3/glmpathcr/R/plot.glmpath.cr.R |only glmpathcr-1.0.3/glmpathcr/R/predict.glmpath.cr.R |only glmpathcr-1.0.3/glmpathcr/R/print.glmpath.cr.R |only glmpathcr-1.0.3/glmpathcr/R/summary.glmpath.cr.R |only glmpathcr-1.0.3/glmpathcr/man/coef.glmpath.cr.Rd |only glmpathcr-1.0.3/glmpathcr/man/glmpath.cr-internal.Rd |only glmpathcr-1.0.3/glmpathcr/man/glmpath.cr.Rd |only glmpathcr-1.0.3/glmpathcr/man/plot.glmpath.cr.Rd |only glmpathcr-1.0.3/glmpathcr/man/predict.glmpath.cr.Rd |only glmpathcr-1.0.3/glmpathcr/man/summary.glmpath.cr.Rd |only glmpathcr-1.0.4/glmpathcr/DESCRIPTION | 18 +++--- glmpathcr-1.0.4/glmpathcr/MD5 | 55 ++++++++++--------- glmpathcr-1.0.4/glmpathcr/NAMESPACE | 17 +++-- glmpathcr-1.0.4/glmpathcr/R/coef.glmpathcr.R |only glmpathcr-1.0.4/glmpathcr/R/cr.backward.R | 6 +- glmpathcr-1.0.4/glmpathcr/R/cr.forward.R | 6 +- glmpathcr-1.0.4/glmpathcr/R/fitted.glmpathcr.R |only glmpathcr-1.0.4/glmpathcr/R/glmpathcr.R |only glmpathcr-1.0.4/glmpathcr/R/plot.glmpathcr.R |only glmpathcr-1.0.4/glmpathcr/R/predict.glmpathcr.R |only glmpathcr-1.0.4/glmpathcr/R/print.glmpathcr.R |only glmpathcr-1.0.4/glmpathcr/R/summary.glmpathcr.R |only glmpathcr-1.0.4/glmpathcr/build |only glmpathcr-1.0.4/glmpathcr/data/diabetes.rda |binary glmpathcr-1.0.4/glmpathcr/inst/CITATION |only glmpathcr-1.0.4/glmpathcr/inst/NEWS.Rd |only glmpathcr-1.0.4/glmpathcr/inst/doc/glmpathcr.R | 22 +++---- glmpathcr-1.0.4/glmpathcr/inst/doc/glmpathcr.Rnw | 37 ++++++------ glmpathcr-1.0.4/glmpathcr/inst/doc/glmpathcr.pdf |binary glmpathcr-1.0.4/glmpathcr/man/coef.glmpathcr.Rd |only glmpathcr-1.0.4/glmpathcr/man/glmpathcr-internal.Rd |only glmpathcr-1.0.4/glmpathcr/man/glmpathcr-package.Rd | 11 +-- glmpathcr-1.0.4/glmpathcr/man/glmpathcr.Rd |only glmpathcr-1.0.4/glmpathcr/man/model.select.Rd | 10 +-- glmpathcr-1.0.4/glmpathcr/man/nonzero.coef.Rd | 9 +-- glmpathcr-1.0.4/glmpathcr/man/plot.glmpathcr.Rd |only glmpathcr-1.0.4/glmpathcr/man/predict.glmpathcr.Rd |only glmpathcr-1.0.4/glmpathcr/man/summary.glmpathcr.Rd |only glmpathcr-1.0.4/glmpathcr/vignettes/glmpathRefs.bib | 5 + glmpathcr-1.0.4/glmpathcr/vignettes/glmpathcr.Rnw | 37 ++++++------ 43 files changed, 120 insertions(+), 113 deletions(-)
Title: EBI Metagenomics Portal
Description: Functions for querying the EBI Metagenomics Portal <https://www.ebi.ac.uk/metagenomics/>. The current main focus is on taxa abundance data, but the intention is that this package should evolve into a general purpose package for working with EBI Metagenomics data using R.
Author: Darren Wilkinson
Maintainer: Darren Wilkinson <darren.wilkinson@ncl.ac.uk>
Diff between ebimetagenomics versions 0.2 dated 2016-10-16 and 0.3 dated 2017-09-07
DESCRIPTION | 18 ++++----- MD5 | 19 +++++---- NAMESPACE | 8 ++-- R/emg.R | 91 +++++++++++++++++++++++++++++++++++++---------- man/analyseOtu.Rd |only man/getProjectSummary.Rd | 2 - man/getProjectsList.Rd | 2 - man/getRunOtu.Rd | 2 - man/getSampleOtu.Rd | 2 - man/plotOtu.Rd | 2 - man/read.otu.tsv.Rd |only man/read.project.csv.Rd |only 12 files changed, 103 insertions(+), 43 deletions(-)
More information about ebimetagenomics at CRAN
Permanent link
Title: Tidy RSS for R
Description: With the objective of including data from RSS feeds into your analysis, 'tidyRSS' parses RSS and Atom XML feeds and returns a tidy data frame.
Author: Robert Myles McDonnell
Maintainer: Robert Myles McDonnell <robertmylesmcdonnell@gmail.com>
Diff between tidyRSS versions 1.2.1 dated 2017-06-16 and 1.2.2 dated 2017-09-07
DESCRIPTION | 11 +- MD5 | 25 +++--- NAMESPACE | 3 NEWS.md | 6 + R/atom_parse.R |only R/json_parse.R |only R/rss_parse.R |only R/tidyfeed.R | 176 +++++--------------------------------------- R/zzz.R | 6 + README.md | 50 ++++-------- build/vignette.rds |binary data/feeds.rda |binary inst/doc/tidyrss.html | 24 +++--- man/tidyfeed.Rd | 19 +++- tests/testthat/test.feeds.R | 1 15 files changed, 96 insertions(+), 225 deletions(-)
Title: Linear Regression with Non-Constant Variances
Description: Runs a linear regression in which both the expected value and the variance can vary per observation. The expected values mu follows the standard linear model mu = X_mu * beta_mu. The standard deviation sigma follows the model log(sigma) = X_sigma * beta_sigma. The package comes with two vignettes: 'Intro' gives an introduction, 'Math' gives mathematical details.
Author: Posthuma Partners <info@posthuma-partners.nl>
Maintainer: Marco Nijmeijer <nijmeijer@posthuma-partners.nl>
Diff between lmvar versions 1.2.1 dated 2017-06-15 and 1.3.0 dated 2017-09-07
lmvar-1.2.1/lmvar/tests/create_test_data.R |only lmvar-1.3.0/lmvar/DESCRIPTION | 9 lmvar-1.3.0/lmvar/MD5 | 67 +- lmvar-1.3.0/lmvar/NAMESPACE | 3 lmvar-1.3.0/lmvar/NEWS.md | 16 lmvar-1.3.0/lmvar/R/cv.lm.R | 203 +++++- lmvar-1.3.0/lmvar/R/cv.lmvar.R | 349 ++++++++--- lmvar-1.3.0/lmvar/R/examples/cv.lm_examples.R | 29 lmvar-1.3.0/lmvar/R/examples/cv.lmvar_examples.R | 30 lmvar-1.3.0/lmvar/R/examples/fwbw.lm_examples.R |only lmvar-1.3.0/lmvar/R/examples/fwbw.lmvar_examples.R |only lmvar-1.3.0/lmvar/R/fitted.lmvar.R | 30 lmvar-1.3.0/lmvar/R/fwbw.R |only lmvar-1.3.0/lmvar/R/fwbw.lm.R |only lmvar-1.3.0/lmvar/R/fwbw.lmvar.R |only lmvar-1.3.0/lmvar/R/lmvar.R | 130 ++-- lmvar-1.3.0/lmvar/R/make_matrix_full_rank.R | 20 lmvar-1.3.0/lmvar/R/make_matrix_full_rank.default.R |only lmvar-1.3.0/lmvar/R/make_matrix_full_rank.qr.R |only lmvar-1.3.0/lmvar/R/make_matrix_full_rank.sparseqr.R |only lmvar-1.3.0/lmvar/R/predict.lmvar.R | 46 - lmvar-1.3.0/lmvar/R/print.cvlmvar.R | 65 +- lmvar-1.3.0/lmvar/R/round_to_sd_accuracy.R | 10 lmvar-1.3.0/lmvar/build/vignette.rds |binary lmvar-1.3.0/lmvar/inst/doc/Intro.Rmd | 11 lmvar-1.3.0/lmvar/inst/doc/Intro.html | 11 lmvar-1.3.0/lmvar/inst/doc/Math.pdf |binary lmvar-1.3.0/lmvar/man/cv.lm.Rd | 99 ++- lmvar-1.3.0/lmvar/man/cv.lmvar.Rd | 148 +++- lmvar-1.3.0/lmvar/man/fitted.lmvar.Rd | 30 lmvar-1.3.0/lmvar/man/fwbw.Rd |only lmvar-1.3.0/lmvar/man/fwbw.lm.Rd |only lmvar-1.3.0/lmvar/man/fwbw.lmvar.Rd |only lmvar-1.3.0/lmvar/man/lmvar.Rd | 93 +- lmvar-1.3.0/lmvar/man/predict.lmvar.Rd | 43 - lmvar-1.3.0/lmvar/tests/testthat.R | 2 lmvar-1.3.0/lmvar/tests/testthat/helper.R |only lmvar-1.3.0/lmvar/tests/testthat/test_cross_validations.R |only lmvar-1.3.0/lmvar/tests/testthat/test_fwbw.R |only lmvar-1.3.0/lmvar/tests/testthat/test_gradient_and_hessian.R | 2 lmvar-1.3.0/lmvar/tests/testthat/test_lmvar.R | 9 lmvar-1.3.0/lmvar/vignettes/Intro.Rmd | 11 42 files changed, 1068 insertions(+), 398 deletions(-)
Title: Event Study Analysis
Description: Perform Event Studies from through our <http://EventStudyTools.com> Application Programming Interface, parse the results, visualize it, and / or use the results in further analysis.
Author: Dr. Simon Mueller
Maintainer: Dr. Simon Mueller <simon.mueller@muon-stat.com>
Diff between EventStudy versions 0.32 dated 2017-08-02 and 0.33 dated 2017-09-07
EventStudy-0.32/EventStudy/man/checkDate.Rd |only EventStudy-0.33/EventStudy/DESCRIPTION | 10 EventStudy-0.33/EventStudy/MD5 | 56 ++-- EventStudy-0.33/EventStudy/NAMESPACE | 1 EventStudy-0.33/EventStudy/NEWS.md | 24 + EventStudy-0.33/EventStudy/R/EventStudyAPI.R | 18 - EventStudy-0.33/EventStudy/R/EventStudyAddin.R | 24 - EventStudy-0.33/EventStudy/R/ResultParser.R | 134 +++++++++- EventStudy-0.33/EventStudy/R/Utils.R | 28 ++ EventStudy-0.33/EventStudy/R/dataHandling.R | 46 +++ EventStudy-0.33/EventStudy/R/zzz.R | 2 EventStudy-0.33/EventStudy/build/vignette.rds |binary EventStudy-0.33/EventStudy/inst/doc/addin_eventstudy.html | 12 EventStudy-0.33/EventStudy/inst/doc/howto_eventstudy.html | 90 +++--- EventStudy-0.33/EventStudy/inst/doc/introduction_eventstudy.R | 3 EventStudy-0.33/EventStudy/inst/doc/introduction_eventstudy.Rmd | 7 EventStudy-0.33/EventStudy/inst/doc/introduction_eventstudy.html | 39 +- EventStudy-0.33/EventStudy/inst/doc/parameters_eventstudy.html | 42 +-- EventStudy-0.33/EventStudy/man/AVCApplicationInput.Rd | 8 EventStudy-0.33/EventStudy/man/AVyCApplicationInput.Rd | 8 EventStudy-0.33/EventStudy/man/EventStudy.Rd | 2 EventStudy-0.33/EventStudy/man/EventStudyAPI.Rd | 28 +- EventStudy-0.33/EventStudy/man/EventStudyApplicationInput.Rd | 4 EventStudy-0.33/EventStudy/man/ResultParser.Rd | 10 EventStudy-0.33/EventStudy/man/checkDateFormat.Rd |only EventStudy-0.33/EventStudy/man/checkFile.Rd | 11 EventStudy-0.33/EventStudy/man/checkFiles.Rd | 21 + EventStudy-0.33/EventStudy/man/estAPIKey.Rd |only EventStudy-0.33/EventStudy/man/getDefaultApplicationInput.Rd |only EventStudy-0.33/EventStudy/man/getSP500ExampleFiles.Rd | 5 EventStudy-0.33/EventStudy/vignettes/introduction_eventstudy.Rmd | 7 31 files changed, 449 insertions(+), 191 deletions(-)
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Title: Space-Time Anomaly Detection using Scan Statistics
Description: Detection of anomalous space-time clusters using the scan
statistics methodology. Focuses on prospective surveillance of data streams,
scanning for clusters with ongoing anomalies. Hypothesis testing is made
possible by Monte Carlo simulation.
Author: Benjamin Allévius [aut, cre]
Maintainer: Benjamin Allévius <benjak@math.su.se>
Diff between scanstatistics versions 0.1.0 dated 2016-09-29 and 1.0.0 dated 2017-09-07
scanstatistics-0.1.0/scanstatistics/R/aggregation_functions.R |only scanstatistics-0.1.0/scanstatistics/R/datatable_utility_functions.R |only scanstatistics-0.1.0/scanstatistics/R/scan_negbin.R |only scanstatistics-0.1.0/scanstatistics/R/scan_poisson.R |only scanstatistics-0.1.0/scanstatistics/R/scan_zip.R |only scanstatistics-0.1.0/scanstatistics/man/add_duration.Rd |only scanstatistics-0.1.0/scanstatistics/man/add_llr.Rd |only scanstatistics-0.1.0/scanstatistics/man/calc_zipstat_over_duration.Rd |only scanstatistics-0.1.0/scanstatistics/man/column_to_int.Rd |only scanstatistics-0.1.0/scanstatistics/man/convolute_denominator.Rd |only scanstatistics-0.1.0/scanstatistics/man/convolute_numerator.Rd |only scanstatistics-0.1.0/scanstatistics/man/create_table.Rd |only scanstatistics-0.1.0/scanstatistics/man/cumsum_duration.Rd |only scanstatistics-0.1.0/scanstatistics/man/enumerate_character.Rd |only scanstatistics-0.1.0/scanstatistics/man/estimate_d.Rd |only scanstatistics-0.1.0/scanstatistics/man/estimate_d_dagger.Rd |only scanstatistics-0.1.0/scanstatistics/man/estimate_zip_relrisk.Rd |only scanstatistics-0.1.0/scanstatistics/man/extract_mlc.Rd |only scanstatistics-0.1.0/scanstatistics/man/extract_scanstatistic.Rd |only scanstatistics-0.1.0/scanstatistics/man/first_keys_match.Rd |only scanstatistics-0.1.0/scanstatistics/man/gen_negbin_counts.Rd |only scanstatistics-0.1.0/scanstatistics/man/generate_poisson_counts.Rd |only scanstatistics-0.1.0/scanstatistics/man/generate_zip_counts.Rd |only scanstatistics-0.1.0/scanstatistics/man/get_all_streams.Rd |only scanstatistics-0.1.0/scanstatistics/man/get_column_values.Rd |only scanstatistics-0.1.0/scanstatistics/man/get_enumerated_character.Rd |only scanstatistics-0.1.0/scanstatistics/man/get_set.Rd |only scanstatistics-0.1.0/scanstatistics/man/getkeys.Rd |only scanstatistics-0.1.0/scanstatistics/man/haskeys.Rd |only scanstatistics-0.1.0/scanstatistics/man/join_zones.Rd |only scanstatistics-0.1.0/scanstatistics/man/kulldorff_baseline.Rd |only scanstatistics-0.1.0/scanstatistics/man/negbin_calculations.Rd |only scanstatistics-0.1.0/scanstatistics/man/negbin_increasing_calculations.Rd |only scanstatistics-0.1.0/scanstatistics/man/negbin_increasing_score.Rd |only scanstatistics-0.1.0/scanstatistics/man/negbin_mcsim.Rd |only scanstatistics-0.1.0/scanstatistics/man/negbin_overdispersion.Rd |only scanstatistics-0.1.0/scanstatistics/man/negbin_score.Rd |only scanstatistics-0.1.0/scanstatistics/man/negbin_score_terms.Rd |only scanstatistics-0.1.0/scanstatistics/man/partition_zones.Rd |only scanstatistics-0.1.0/scanstatistics/man/poisson_calculations.Rd |only scanstatistics-0.1.0/scanstatistics/man/poisson_mcsim.Rd |only scanstatistics-0.1.0/scanstatistics/man/poisson_relrisk.Rd |only scanstatistics-0.1.0/scanstatistics/man/poisson_score_terms.Rd |only scanstatistics-0.1.0/scanstatistics/man/poisson_statistic.Rd |only scanstatistics-0.1.0/scanstatistics/man/scan_negbin.Rd |only scanstatistics-0.1.0/scanstatistics/man/scan_poisson.Rd |only scanstatistics-0.1.0/scanstatistics/man/scan_zip.Rd |only scanstatistics-0.1.0/scanstatistics/man/scanstatistic_object.Rd |only scanstatistics-0.1.0/scanstatistics/man/score_zone_sums.Rd |only scanstatistics-0.1.0/scanstatistics/man/sim_negbin_statistic.Rd |only scanstatistics-0.1.0/scanstatistics/man/simulate_poisson_scanstatistic.Rd |only scanstatistics-0.1.0/scanstatistics/man/simulate_zip_scanstatistic.Rd |only scanstatistics-0.1.0/scanstatistics/man/times_and_durations.Rd |only scanstatistics-0.1.0/scanstatistics/man/validate_colnames.Rd |only scanstatistics-0.1.0/scanstatistics/man/validate_scan.Rd |only scanstatistics-0.1.0/scanstatistics/man/validate_values.Rd |only scanstatistics-0.1.0/scanstatistics/man/validate_zones.Rd |only scanstatistics-0.1.0/scanstatistics/man/window_zip_statistic.Rd |only scanstatistics-0.1.0/scanstatistics/man/zip_calculations.Rd |only scanstatistics-0.1.0/scanstatistics/man/zip_em_estimates.Rd |only scanstatistics-0.1.0/scanstatistics/man/zip_mcsim.Rd |only scanstatistics-0.1.0/scanstatistics/man/zip_statistic.Rd |only scanstatistics-0.1.0/scanstatistics/man/zip_statistic_factor.Rd |only scanstatistics-0.1.0/scanstatistics/man/zip_statistic_term.Rd |only scanstatistics-0.1.0/scanstatistics/man/zone_sum.Rd |only scanstatistics-0.1.0/scanstatistics/man/zone_table_creator.Rd |only scanstatistics-0.1.0/scanstatistics/tests/testthat/test_aggregation_functions.R |only scanstatistics-0.1.0/scanstatistics/tests/testthat/test_scan_negbin.R |only scanstatistics-0.1.0/scanstatistics/tests/testthat/test_scan_poisson.R |only scanstatistics-0.1.0/scanstatistics/tests/testthat/test_scan_zip.R |only scanstatistics-0.1.0/scanstatistics/tests/testthat/test_utility_functions.R |only scanstatistics-1.0.0/scanstatistics/DESCRIPTION | 31 scanstatistics-1.0.0/scanstatistics/MD5 | 250 +++--- scanstatistics-1.0.0/scanstatistics/NAMESPACE | 41 - scanstatistics-1.0.0/scanstatistics/NEWS.md | 16 scanstatistics-1.0.0/scanstatistics/R/RcppExports.R |only scanstatistics-1.0.0/scanstatistics/R/baseline_estimation.R | 208 ++++- scanstatistics-1.0.0/scanstatistics/R/data.R | 49 - scanstatistics-1.0.0/scanstatistics/R/fss_exponential_family.R |only scanstatistics-1.0.0/scanstatistics/R/fss_subset_score.R |only scanstatistics-1.0.0/scanstatistics/R/fss_utility_functions.R |only scanstatistics-1.0.0/scanstatistics/R/mscan_fss.R |only scanstatistics-1.0.0/scanstatistics/R/scan_bayes_negbin.R |only scanstatistics-1.0.0/scanstatistics/R/scan_eb_negbin.R |only scanstatistics-1.0.0/scanstatistics/R/scan_eb_poisson.R |only scanstatistics-1.0.0/scanstatistics/R/scan_eb_zip.R |only scanstatistics-1.0.0/scanstatistics/R/scan_pb_poisson.R |only scanstatistics-1.0.0/scanstatistics/R/scanstatistics.R | 70 - scanstatistics-1.0.0/scanstatistics/R/scanstatistics_general.R | 287 +++---- scanstatistics-1.0.0/scanstatistics/R/utility_functions.R | 225 ++--- scanstatistics-1.0.0/scanstatistics/R/zone_utility_functions.R | 175 ---- scanstatistics-1.0.0/scanstatistics/R/zones.R | 54 - scanstatistics-1.0.0/scanstatistics/README.md | 353 +++----- scanstatistics-1.0.0/scanstatistics/build/vignette.rds |binary scanstatistics-1.0.0/scanstatistics/data/NM_geo.rda |binary scanstatistics-1.0.0/scanstatistics/data/NM_map.rda |binary scanstatistics-1.0.0/scanstatistics/data/NM_popcas.rda |binary scanstatistics-1.0.0/scanstatistics/inst/doc/introduction.R | 148 +-- scanstatistics-1.0.0/scanstatistics/inst/doc/introduction.Rmd | 395 +++------- scanstatistics-1.0.0/scanstatistics/inst/doc/introduction.html | 308 ++----- scanstatistics-1.0.0/scanstatistics/inst/image |only scanstatistics-1.0.0/scanstatistics/man/NM_geo.Rd | 18 scanstatistics-1.0.0/scanstatistics/man/NM_map.Rd | 18 scanstatistics-1.0.0/scanstatistics/man/NM_popcas.Rd | 14 scanstatistics-1.0.0/scanstatistics/man/aggregate_per_location.Rd |only scanstatistics-1.0.0/scanstatistics/man/aggregate_per_stream.Rd |only scanstatistics-1.0.0/scanstatistics/man/apply_rowwise.Rd |only scanstatistics-1.0.0/scanstatistics/man/closest_subsets.Rd | 14 scanstatistics-1.0.0/scanstatistics/man/connected_neighbors.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/connected_to.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/coords_to_knn.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/df_to_matrix.Rd |only scanstatistics-1.0.0/scanstatistics/man/dist_to_knn.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/estimate_baselines.Rd |only scanstatistics-1.0.0/scanstatistics/man/estimate_variances.Rd |only scanstatistics-1.0.0/scanstatistics/man/estimate_zip_params.Rd |only scanstatistics-1.0.0/scanstatistics/man/exponential_lambda.Rd |only scanstatistics-1.0.0/scanstatistics/man/exponential_priority.Rd |only scanstatistics-1.0.0/scanstatistics/man/exponential_qmax.Rd |only scanstatistics-1.0.0/scanstatistics/man/exponential_score.Rd |only scanstatistics-1.0.0/scanstatistics/man/flexible_zones.Rd | 14 scanstatistics-1.0.0/scanstatistics/man/flipud.Rd |only scanstatistics-1.0.0/scanstatistics/man/gaussian_lambda.Rd |only scanstatistics-1.0.0/scanstatistics/man/gaussian_priority.Rd |only scanstatistics-1.0.0/scanstatistics/man/gaussian_qmax.Rd |only scanstatistics-1.0.0/scanstatistics/man/gaussian_score.Rd |only scanstatistics-1.0.0/scanstatistics/man/get_subset.Rd |only scanstatistics-1.0.0/scanstatistics/man/get_zero_indices.Rd |only scanstatistics-1.0.0/scanstatistics/man/get_zone.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/gumbel_pvalue.Rd |only scanstatistics-1.0.0/scanstatistics/man/has_converged.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/if_connected.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/is_connected.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/knn_zones.Rd | 13 scanstatistics-1.0.0/scanstatistics/man/matrix_to_df.Rd |only scanstatistics-1.0.0/scanstatistics/man/mc_pvalue.Rd | 8 scanstatistics-1.0.0/scanstatistics/man/mscan_fss.Rd |only scanstatistics-1.0.0/scanstatistics/man/permute_matrix.Rd |only scanstatistics-1.0.0/scanstatistics/man/poisson_lambda.Rd |only scanstatistics-1.0.0/scanstatistics/man/poisson_priority.Rd |only scanstatistics-1.0.0/scanstatistics/man/poisson_qmax.Rd |only scanstatistics-1.0.0/scanstatistics/man/poisson_score.Rd |only scanstatistics-1.0.0/scanstatistics/man/powerset_zones.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/print.scanstatistic.Rd | 1 scanstatistics-1.0.0/scanstatistics/man/prioritize_and_execute.Rd |only scanstatistics-1.0.0/scanstatistics/man/prioritize_cols.Rd |only scanstatistics-1.0.0/scanstatistics/man/reorder_rows.Rd |only scanstatistics-1.0.0/scanstatistics/man/run_scan.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_bayes_negbin.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_bayes_negbin_cpp.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_eb_negbin.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_eb_negbin_cpp.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_eb_poisson.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_eb_poisson_cpp.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_eb_zip.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_eb_zip_cpp.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_pb_perm_cpp.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_pb_poisson.Rd |only scanstatistics-1.0.0/scanstatistics/man/scan_pb_poisson_cpp.Rd |only scanstatistics-1.0.0/scanstatistics/man/score_locations.Rd | 19 scanstatistics-1.0.0/scanstatistics/man/score_priority_subset.Rd |only scanstatistics-1.0.0/scanstatistics/man/subset_aggregation.Rd |only scanstatistics-1.0.0/scanstatistics/man/subset_aggregation_FF.Rd |only scanstatistics-1.0.0/scanstatistics/man/subset_aggregation_FN_NF.Rd |only scanstatistics-1.0.0/scanstatistics/man/sum_over_subset.Rd |only scanstatistics-1.0.0/scanstatistics/man/sum_reorder_sum.Rd |only scanstatistics-1.0.0/scanstatistics/man/top_clusters.Rd | 24 scanstatistics-1.0.0/scanstatistics/src |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_baseline_estimation.R | 49 - scanstatistics-1.0.0/scanstatistics/tests/testthat/test_fss_exponential_family.R |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_fss_utility_functions.R |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_probability_functions.R |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_scan_bayes_negbin.R |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_scan_eb_negbin.R |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_scan_eb_poisson.R |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_scan_eb_zip.R |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_scan_pb_perm.R |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_scan_pb_poisson.R |only scanstatistics-1.0.0/scanstatistics/tests/testthat/test_zones.R | 20 scanstatistics-1.0.0/scanstatistics/vignettes/introduction.Rmd | 395 +++------- scanstatistics-1.0.0/scanstatistics/vignettes/references.bib | 9 181 files changed, 1388 insertions(+), 1847 deletions(-)
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More information about PakPMICS2014HL at CRAN
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Title: Functions from "Reinsurance: Actuarial and Statistical Aspects"
Description: Functions from the book "Reinsurance: Actuarial and Statistical Aspects" (2017) by Hansjoerg Albrecher, Jan Beirlant and Jef Teugels <http://wiley.com/WileyCDA/WileyTitle/productCd-0470772689.html>.
Author: Tom Reynkens [aut, cre],
Roel Verbelen [aut] (R code for Mixed Erlang distribution),
Anastasios Bardoutsos [ctb] (Original R code for cEPD estimator),
Dries Cornilly [ctb] (Original R code for EVT estimators for truncated
data),
Yuri Goegebeur [ctb] (Original S-Plus code for basic EVT estimators),
Klaus Herrmann [ctb] (Original R code for GPD estimator)
Maintainer: Tom Reynkens <tomreynkens@hotmail.com>
Diff between ReIns versions 1.0.4 dated 2017-06-10 and 1.0.5 dated 2017-09-07
DESCRIPTION | 14 +++-- MD5 | 54 ++++++++++----------- R/Cpp_export.R | 6 +- R/RcppExports.R | 10 +-- R/stdf.R | 4 - build/vignette.rds |binary inst/NEWS.Rd | 52 +++++++++++++++++--- inst/doc/ReIns.html | 120 +++++++++++++++++++++++------------------------ man/CTE.Rd | 2 man/EVTfit.Rd | 2 man/ExcessSplice.Rd | 2 man/MEfit.Rd | 2 man/Splice.Rd | 2 man/SpliceECDF.Rd | 2 man/SpliceFit.Rd | 2 man/SpliceFitGPD.Rd | 2 man/SpliceFitPareto.Rd | 2 man/SpliceFiticPareto.Rd | 2 man/SpliceLL.Rd | 2 man/SpliceLL_TB.Rd | 2 man/SplicePP.Rd | 2 man/SplicePP_TB.Rd | 2 man/SpliceQQ.Rd | 2 man/SpliceQQ_TB.Rd | 2 man/SpliceTB.Rd | 2 man/VaR.Rd | 2 src/RcppExports.cpp | 10 +-- src/init.c | 20 +++---- 28 files changed, 182 insertions(+), 144 deletions(-)
Title: Learning Causal Cyclic Graphs from Unknown Shift Interventions
Description: Code for 'backShift', an algorithm to estimate the connectivity
matrix of a directed (possibly cyclic) graph with hidden variables. The
underlying system is required to be linear and we assume that observations
under different shift interventions are available. For more details,
see <arXiv:1506.02494>.
Author: Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>
Maintainer: Christina Heinze-Deml <heinzedeml@stat.math.ethz.ch>
Diff between backShift versions 0.1.4.1 dated 2017-01-09 and 0.1.4.2 dated 2017-09-07
DESCRIPTION | 18 +++++++++--------- MD5 | 29 ++++++++++++++++------------- NAMESPACE | 3 ++- R/ffdiag.R |only R/metrics.R | 7 +++++-- build/vignette.rds |binary inst/doc/exampleBackShift.html | 19 ++++++++++--------- man/bootstrapBackShift.Rd | 1 - man/computeDiagonalization.Rd | 1 - man/generateA.Rd | 1 - man/metricsThreshold.Rd | 1 - man/plotDiagonalization.Rd | 1 - man/plotGraphEdgeAttr.Rd | 1 - man/plotInterventionVars.Rd | 1 - man/simulateInterventions.Rd | 1 - src |only 16 files changed, 42 insertions(+), 42 deletions(-)
Title: Sensitivity Analysis for Comparative Methods
Description: An implementation of sensitivity analysis for phylogenetic comparative
methods. The package is an umbrella of statistical and graphical methods that
estimate and report different types of uncertainty in PCM:
(i) Species Sampling uncertainty (sample size; influential species and clades).
(ii) Phylogenetic uncertainty (different topologies and/or branch lengths).
(iii) Data uncertainty (intraspecific variation and measurement error).
Author: Gustavo Paterno [cre, aut],
Gijsbert Werner [aut],
Caterina Penone [aut],
Pablo Martinez [ctb]
Maintainer: Gustavo Paterno <paternogbc@gmail.com>
Diff between sensiPhy versions 0.6.0 dated 2017-01-13 and 0.7.0 dated 2017-09-07
sensiPhy-0.6.0/sensiPhy/build |only sensiPhy-0.6.0/sensiPhy/inst |only sensiPhy-0.6.0/sensiPhy/vignettes |only sensiPhy-0.7.0/sensiPhy/DESCRIPTION | 32 sensiPhy-0.7.0/sensiPhy/MD5 | 169 ++- sensiPhy-0.7.0/sensiPhy/NAMESPACE | 58 + sensiPhy-0.7.0/sensiPhy/NEWS.md | 46 + sensiPhy-0.7.0/sensiPhy/R/clade_phyglm.R | 142 +-- sensiPhy-0.7.0/sensiPhy/R/clade_phylm.R | 124 +- sensiPhy-0.7.0/sensiPhy/R/clade_physig.R |only sensiPhy-0.7.0/sensiPhy/R/influ_phyglm.R | 96 +- sensiPhy-0.7.0/sensiPhy/R/influ_phylm.R | 97 +- sensiPhy-0.7.0/sensiPhy/R/influ_physig.R |only sensiPhy-0.7.0/sensiPhy/R/intra_clade_phyglm.R |only sensiPhy-0.7.0/sensiPhy/R/intra_clade_phylm.R |only sensiPhy-0.7.0/sensiPhy/R/intra_influ_phyglm.R |only sensiPhy-0.7.0/sensiPhy/R/intra_influ_phylm.R |only sensiPhy-0.7.0/sensiPhy/R/intra_phyglm.R | 63 - sensiPhy-0.7.0/sensiPhy/R/intra_phylm.R | 59 - sensiPhy-0.7.0/sensiPhy/R/intra_physig.R |only sensiPhy-0.7.0/sensiPhy/R/intra_samp_phyglm.R |only sensiPhy-0.7.0/sensiPhy/R/intra_samp_phylm.R |only sensiPhy-0.7.0/sensiPhy/R/match_dataphy.R | 63 + sensiPhy-0.7.0/sensiPhy/R/print_methods.R | 198 ++++ sensiPhy-0.7.0/sensiPhy/R/samp_phyglm.R | 120 +- sensiPhy-0.7.0/sensiPhy/R/samp_phylm.R | 148 +-- sensiPhy-0.7.0/sensiPhy/R/samp_physig.R |only sensiPhy-0.7.0/sensiPhy/R/sensi_plot.R | 33 sensiPhy-0.7.0/sensiPhy/R/sensi_plot.clade.physig.R |only sensiPhy-0.7.0/sensiPhy/R/sensi_plot.influ.physig.R |only sensiPhy-0.7.0/sensiPhy/R/sensi_plot.samp.physig.R |only sensiPhy-0.7.0/sensiPhy/R/sensi_plot.sensiClade.R | 40 sensiPhy-0.7.0/sensiPhy/R/sensi_plot.sensiINTER_Clade.R |only sensiPhy-0.7.0/sensiPhy/R/sensi_plot.sensiINTER_Influ.R |only sensiPhy-0.7.0/sensiPhy/R/sensi_plot.sensiINTER_Samp.R |only sensiPhy-0.7.0/sensiPhy/R/sensi_plot.sensiInflu.R | 70 - sensiPhy-0.7.0/sensiPhy/R/sensi_plot.sensiIntra.sensiTree.R | 183 +++- sensiPhy-0.7.0/sensiPhy/R/sensi_plot.sensiSamp.R | 94 +- sensiPhy-0.7.0/sensiPhy/R/sensi_plot.tree.physig.R |only sensiPhy-0.7.0/sensiPhy/R/summary_methods.R | 517 +++++++++++- sensiPhy-0.7.0/sensiPhy/R/tree_clade_phyglm.R |only sensiPhy-0.7.0/sensiPhy/R/tree_clade_phylm.R |only sensiPhy-0.7.0/sensiPhy/R/tree_influ_phyglm.R |only sensiPhy-0.7.0/sensiPhy/R/tree_influ_phylm.R |only sensiPhy-0.7.0/sensiPhy/R/tree_intra_phyglm.R |only sensiPhy-0.7.0/sensiPhy/R/tree_intra_phylm.R |only sensiPhy-0.7.0/sensiPhy/R/tree_phyglm.R | 59 - sensiPhy-0.7.0/sensiPhy/R/tree_phylm.R | 60 - sensiPhy-0.7.0/sensiPhy/R/tree_physig.R |only sensiPhy-0.7.0/sensiPhy/R/tree_samp_phyglm.R |only sensiPhy-0.7.0/sensiPhy/R/tree_samp_phylm.R |only sensiPhy-0.7.0/sensiPhy/R/utils_internal.R |only sensiPhy-0.7.0/sensiPhy/R/utils_plot.R | 66 - sensiPhy-0.7.0/sensiPhy/data/alien.data.rda |binary sensiPhy-0.7.0/sensiPhy/data/alien.phy.rda |binary sensiPhy-0.7.0/sensiPhy/data/alien.rda |binary sensiPhy-0.7.0/sensiPhy/data/primates.data.rda |binary sensiPhy-0.7.0/sensiPhy/data/primates.phy.rda |binary sensiPhy-0.7.0/sensiPhy/data/primates.rda |binary sensiPhy-0.7.0/sensiPhy/man/alien.Rd | 1 sensiPhy-0.7.0/sensiPhy/man/alien.data.Rd | 1 sensiPhy-0.7.0/sensiPhy/man/alien.phy.Rd | 1 sensiPhy-0.7.0/sensiPhy/man/clade_phyglm.Rd | 69 + sensiPhy-0.7.0/sensiPhy/man/clade_phylm.Rd | 52 - sensiPhy-0.7.0/sensiPhy/man/clade_physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/influ_phyglm.Rd | 27 sensiPhy-0.7.0/sensiPhy/man/influ_phylm.Rd | 27 sensiPhy-0.7.0/sensiPhy/man/influ_physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/intra_clade_phyglm.Rd |only sensiPhy-0.7.0/sensiPhy/man/intra_clade_phylm.Rd |only sensiPhy-0.7.0/sensiPhy/man/intra_influ_phyglm.Rd |only sensiPhy-0.7.0/sensiPhy/man/intra_influ_phylm.Rd |only sensiPhy-0.7.0/sensiPhy/man/intra_phyglm.Rd | 26 sensiPhy-0.7.0/sensiPhy/man/intra_phylm.Rd | 22 sensiPhy-0.7.0/sensiPhy/man/intra_physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/intra_samp_phyglm.Rd |only sensiPhy-0.7.0/sensiPhy/man/intra_samp_phylm.Rd |only sensiPhy-0.7.0/sensiPhy/man/match_dataphy.Rd | 29 sensiPhy-0.7.0/sensiPhy/man/miss.phylo.d.Rd | 7 sensiPhy-0.7.0/sensiPhy/man/primates.Rd | 1 sensiPhy-0.7.0/sensiPhy/man/primates.data.Rd | 1 sensiPhy-0.7.0/sensiPhy/man/primates.phy.Rd | 1 sensiPhy-0.7.0/sensiPhy/man/samp_phyglm.Rd | 33 sensiPhy-0.7.0/sensiPhy/man/samp_phylm.Rd | 35 sensiPhy-0.7.0/sensiPhy/man/samp_physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensiPhy.Rd | 2 sensiPhy-0.7.0/sensiPhy/man/sensi_plot.Rd | 36 sensiPhy-0.7.0/sensiPhy/man/sensi_plot.clade.physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.influ.physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.intra.physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.samp.physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiClade.Rd | 17 sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiInflu.Rd | 21 sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiIntra.Rd | 13 sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiIntra_Clade.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiIntra_Influ.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiIntra_Samp.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiSamp.Rd | 19 sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiTree.Rd | 13 sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiTree_Clade.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiTree_Influ.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiTree_Intra.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.sensiTree_Samp.Rd |only sensiPhy-0.7.0/sensiPhy/man/sensi_plot.tree.physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/tree_clade_phyglm.Rd |only sensiPhy-0.7.0/sensiPhy/man/tree_clade_phylm.Rd |only sensiPhy-0.7.0/sensiPhy/man/tree_influ_phyglm.Rd |only sensiPhy-0.7.0/sensiPhy/man/tree_influ_phylm.Rd |only sensiPhy-0.7.0/sensiPhy/man/tree_intra_phyglm.Rd |only sensiPhy-0.7.0/sensiPhy/man/tree_intra_phylm.Rd |only sensiPhy-0.7.0/sensiPhy/man/tree_phyglm.Rd | 21 sensiPhy-0.7.0/sensiPhy/man/tree_phylm.Rd | 19 sensiPhy-0.7.0/sensiPhy/man/tree_physig.Rd |only sensiPhy-0.7.0/sensiPhy/man/tree_samp_phyglm.Rd |only sensiPhy-0.7.0/sensiPhy/man/tree_samp_phylm.Rd |only 115 files changed, 2021 insertions(+), 1010 deletions(-)
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