Title: Stagewise Generalized Estimating Equations
Description: Stagewise techniques implemented with Generalized Estimating Equations to handle individual, group, bi-level, and interaction selection.
Author: Gregory Vaughan [aut, cre],
Kun Chen [ctb], Jun Yan [ctb]
Maintainer: Gregory Vaughan <gregory.vaughan@uconn.edu>
Diff between sgee versions 0.2-0 dated 2016-10-17 and 0.5-0 dated 2017-09-16
ChangeLog | 86 ++++++++++++++++++++ DESCRIPTION | 14 +-- MD5 | 68 ++++++++-------- NAMESPACE | 5 + R/bisee.R | 195 ++++++++++++++++++++++++++++++++--------------- R/deltaFinder.R | 3 R/deltaValue.R | 3 R/evaluateGEE.R | 143 ++++++++++++++++++++++++++-------- R/genCorMat.R | 3 R/genData.R | 91 +++++++++++++++++---- R/gsee.R | 142 ++++++++++++++++++++++++---------- R/hisee.R | 169 +++++++++++++++++++++++++++++----------- R/isee.R |only R/miniSim.R | 3 R/plot.sgee.R | 67 +++++++++++----- R/print.sgee.R | 3 R/print.sgeeSummary.R | 3 R/see.R | 133 +++++++++++++++++++++++--------- R/sgee-package.R | 10 +- R/sgee.control.R | 49 +++++++++++ R/summary.sgee.R | 94 +++++++++++++++++----- inst/COPYRIGHT | 5 - man/bisee.Rd | 50 ++++++------ man/deltaFinder.Rd | 1 man/deltaValue.Rd | 1 man/genCorMat.Rd | 1 man/genData.Rd | 32 +++++-- man/hisee.Rd | 22 +++-- man/isee.Rd |only man/miniSim.Rd | 1 man/plot.sgee.Rd | 11 +- man/print.sgee.Rd | 1 man/print.sgeeSummary.Rd | 1 man/sgee-package.Rd | 20 ++-- man/sgee.control.Rd | 22 ++++- man/summary.sgee.Rd | 22 ++++- 36 files changed, 1075 insertions(+), 399 deletions(-)
Title: Airborne LiDAR Data Manipulation and Visualization for Forestry
Applications
Description: Airborne LiDAR (Light Detection and Ranging) interface for data
manipulation and visualization. Read/write 'las' and 'laz' files, computation
of metrics in area based approach, point filtering, artificial point reduction,
classification from geographic data, normalization, individual tree segmentation
and other manipulations.
Author: Jean-Romain Roussel [aut, cre, cph],
David Auty [aut, ctb] (Reviews the documentation),
Florian De Boissieu [ctb] (Fixed bugs and improved catalog features),
Andrew Sánchez Meador [ctb] (Helped to review the documentation)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between lidR versions 1.2.1 dated 2017-06-13 and 1.3.0 dated 2017-09-16
lidR-1.2.1/lidR/R/catalog.r |only lidR-1.2.1/lidR/R/las-class.r |only lidR-1.2.1/lidR/R/lasarea.r |only lidR-1.2.1/lidR/R/lasextent.r |only lidR-1.2.1/lidR/R/lasheader-class.r |only lidR-1.2.1/lidR/R/lassummary.r |only lidR-1.2.1/lidR/R/metrics_canopy_roughtness.r |only lidR-1.2.1/lidR/R/option.r |only lidR-1.2.1/lidR/man/as.SpatialPixelsDataFrame.Rd |only lidR-1.2.1/lidR/man/as.SpatialPointsDataFrame.Rd |only lidR-1.2.1/lidR/man/cash-LAS-method.Rd |only lidR-1.2.1/lidR/man/catalog_index.Rd |only lidR-1.2.1/lidR/man/extent-LAS-method.Rd |only lidR-1.2.1/lidR/man/lasarea.Rd |only lidR-1.2.1/lidR/man/plot.Catalog.Rd |only lidR-1.3.0/lidR/DESCRIPTION | 44 +- lidR-1.3.0/lidR/MD5 | 203 +++++----- lidR-1.3.0/lidR/NAMESPACE | 34 + lidR-1.3.0/lidR/NEWS.md | 57 ++- lidR-1.3.0/lidR/R/RcppExports.R | 42 +- lidR-1.3.0/lidR/R/catalog_apply.r | 314 +++++++++++------ lidR-1.3.0/lidR/R/catalog_index.r | 96 +++-- lidR-1.3.0/lidR/R/catalog_makecluster.r |only lidR-1.3.0/lidR/R/catalog_query.r | 214 +++++++---- lidR-1.3.0/lidR/R/catalog_reshape.r |only lidR-1.3.0/lidR/R/catalog_select.r | 56 ++- lidR-1.3.0/lidR/R/class-las.r |only lidR-1.3.0/lidR/R/class-lascatalog.r |only lidR-1.3.0/lidR/R/class-lasheader.r |only lidR-1.3.0/lidR/R/constant.R | 21 + lidR-1.3.0/lidR/R/deprecated.r | 13 lidR-1.3.0/lidR/R/grid_canopy.r | 97 +++-- lidR-1.3.0/lidR/R/grid_catalog.r |only lidR-1.3.0/lidR/R/grid_density.r | 60 ++- lidR-1.3.0/lidR/R/grid_metrics.r | 89 +++- lidR-1.3.0/lidR/R/grid_terrain.r | 95 +++-- lidR-1.3.0/lidR/R/grid_tincanopy.r | 72 ++- lidR-1.3.0/lidR/R/lasaggreagte.r | 4 lidR-1.3.0/lidR/R/lascheck.r | 4 lidR-1.3.0/lidR/R/lasclassify.r | 24 - lidR-1.3.0/lidR/R/lasclip.r | 2 lidR-1.3.0/lidR/R/lasdecimate.r | 6 lidR-1.3.0/lidR/R/lasnormalize.r | 92 +++- lidR-1.3.0/lidR/R/lidRError.r | 4 lidR-1.3.0/lidR/R/metrics.r | 22 - lidR-1.3.0/lidR/R/metrics_canopy_roughness.r |only lidR-1.3.0/lidR/R/options.r |only lidR-1.3.0/lidR/R/plot.catalog.r | 75 +++- lidR-1.3.0/lidR/R/plot.lasmetrics.r | 14 lidR-1.3.0/lidR/R/readLAS.r | 258 +++++++++---- lidR-1.3.0/lidR/R/tree_metrics.r | 6 lidR-1.3.0/lidR/R/utils_geometry.r | 10 lidR-1.3.0/lidR/R/utils_interpolations.r | 40 +- lidR-1.3.0/lidR/R/utils_misc.r | 8 lidR-1.3.0/lidR/R/utils_progress.r |only lidR-1.3.0/lidR/R/utils_projection.r |only lidR-1.3.0/lidR/R/utils_spatial.r |only lidR-1.3.0/lidR/R/utils_typecast.r | 227 +++++------- lidR-1.3.0/lidR/R/writeLAS.r | 6 lidR-1.3.0/lidR/R/zzz.r | 44 ++ lidR-1.3.0/lidR/README.md | 4 lidR-1.3.0/lidR/inst/extdata/Megaplot.lax |only lidR-1.3.0/lidR/inst/extdata/Topography.lax |only lidR-1.3.0/lidR/inst/extdata/Tree.lax |only lidR-1.3.0/lidR/man/LAS-class.Rd | 20 - lidR-1.3.0/lidR/man/LAS.Rd | 2 lidR-1.3.0/lidR/man/LAScatalog-class.Rd |only lidR-1.3.0/lidR/man/LASheader-class.Rd | 12 lidR-1.3.0/lidR/man/LASheader.Rd | 2 lidR-1.3.0/lidR/man/area.Rd |only lidR-1.3.0/lidR/man/as.lasmetrics.Rd | 5 lidR-1.3.0/lidR/man/as.raster.lasmetrics.Rd | 16 lidR-1.3.0/lidR/man/as.spatial.Rd |only lidR-1.3.0/lidR/man/catalog.Rd | 13 lidR-1.3.0/lidR/man/catalog_apply.Rd | 206 ++++++----- lidR-1.3.0/lidR/man/catalog_options.Rd |only lidR-1.3.0/lidR/man/catalog_queries.Rd | 72 ++- lidR-1.3.0/lidR/man/catalog_reshape.Rd |only lidR-1.3.0/lidR/man/catalog_select.Rd | 10 lidR-1.3.0/lidR/man/extent.Rd |only lidR-1.3.0/lidR/man/grid_canopy.Rd | 54 +- lidR-1.3.0/lidR/man/grid_density.Rd | 33 + lidR-1.3.0/lidR/man/grid_metrics.Rd | 69 ++- lidR-1.3.0/lidR/man/grid_terrain.Rd | 45 +- lidR-1.3.0/lidR/man/grid_tincanopy.Rd | 36 + lidR-1.3.0/lidR/man/lasclip.Rd | 2 lidR-1.3.0/lidR/man/lasdecimate.Rd | 4 lidR-1.3.0/lidR/man/lasnormalize.Rd | 52 ++ lidR-1.3.0/lidR/man/lidR-deprecated.Rd | 5 lidR-1.3.0/lidR/man/lidr_options.Rd | 11 lidR-1.3.0/lidR/man/plot.LAScatalog.Rd |only lidR-1.3.0/lidR/man/plot.lasmetrics.Rd | 8 lidR-1.3.0/lidR/man/readLAS.Rd | 82 ++-- lidR-1.3.0/lidR/man/rumple_index.Rd | 16 lidR-1.3.0/lidR/man/stdmetrics.Rd | 8 lidR-1.3.0/lidR/man/summary.LAS.Rd | 21 - lidR-1.3.0/lidR/src/QuadTree.cpp | 170 ++++++++- lidR-1.3.0/lidR/src/QuadTree.h | 31 + lidR-1.3.0/lidR/src/RcppExports.cpp | 85 +++- lidR-1.3.0/lidR/src/algo_li2012.cpp | 2 lidR-1.3.0/lidR/src/cxx_utils.cpp | 62 +++ lidR-1.3.0/lidR/src/init.c | 60 +-- lidR-1.3.0/lidR/src/knn.cpp |only lidR-1.3.0/lidR/src/tsearch.cpp | 92 +--- lidR-1.3.0/lidR/src/update_list_by_ref.cpp |only lidR-1.3.0/lidR/tests/testthat/test-canopy.R |only lidR-1.3.0/lidR/tests/testthat/test-casting.R | 19 + lidR-1.3.0/lidR/tests/testthat/test-catalog.R | 129 ++++++ lidR-1.3.0/lidR/tests/testthat/test-colors.R |only lidR-1.3.0/lidR/tests/testthat/test-fasttools.R |only lidR-1.3.0/lidR/tests/testthat/test-grid_catalog.R |only lidR-1.3.0/lidR/tests/testthat/test-grid_hexametrics.R | 4 lidR-1.3.0/lidR/tests/testthat/test-lasclassify.R |only lidR-1.3.0/lidR/tests/testthat/test-lasdecimate.R | 2 lidR-1.3.0/lidR/tests/testthat/test-lasgrid.R | 12 lidR-1.3.0/lidR/tests/testthat/test-lasground.R |only lidR-1.3.0/lidR/tests/testthat/test-lasnormalize.R | 20 - lidR-1.3.0/lidR/tests/testthat/test-lastrees.R | 3 lidR-1.3.0/lidR/tests/testthat/test-metrics.R |only lidR-1.3.0/lidR/tests/testthat/test-readLAS.R | 31 + lidR-1.3.0/lidR/tests/testthat/test-roughness.R | 57 --- lidR-1.3.0/lidR/tests/testthat/test-stdmetric.R | 2 lidR-1.3.0/lidR/tests/testthat/test-terrain.R | 8 lidR-1.3.0/lidR/tests/testthat/test-utils_geometry.R | 75 +++- lidR-1.3.0/lidR/tests/testthat/test-writeLAS.R | 4 125 files changed, 2726 insertions(+), 1303 deletions(-)
Title: Multivariate Meshes and Histograms in Arbitrary Dimensions
Description: Define, manipulate and plot meshes on simplices, spheres, balls, rectangles and tubes.
Directional and other multivariate histograms are provided.
Author: John P. Nolan
Maintainer: John P. Nolan <jpnolan@american.edu>
Diff between mvmesh versions 1.4 dated 2016-10-21 and 1.5 dated 2017-09-16
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/mvhist.R | 29 +++++++++++++++++------------ R/mvmesh.R | 20 +++++++++++++------- man/UnitSphere.Rd | 6 +++--- man/mvhist.Rd | 15 +++++++-------- man/mvmesh-package.Rd | 7 +++++-- 7 files changed, 55 insertions(+), 42 deletions(-)
Title: Generalized Spherical Distributions
Description: Define and compute with generalized spherical distributions - multivariate probability
laws that are specified by a star shaped contour (directional behavior) and a radial component.
Author: John P Nolan
Maintainer: John P Nolan <jpnolan@american.edu>
Diff between gensphere versions 1.0 dated 2016-05-18 and 1.1 dated 2017-09-16
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NAMESPACE | 1 + R/gensphere.R | 44 ++++++++++++++++++++++++++++++-------------- man/cfunc.new.Rd | 13 ++++++++++--- man/gensphere-package.Rd | 3 +++ 6 files changed, 54 insertions(+), 26 deletions(-)
Title: Numerical Integration over Spheres and Balls in n-Dimensions;
Multivariate Polar Coordinates
Description: Provides several methods to integrate functions over the unit
sphere and ball in n-dimensional Euclidean space. Routines for converting to/from
multivariate polar/spherical coordinates are also provided.
Author: John P. Nolan, American University
Maintainer: John P. Nolan <jpnolan@american.edu>
Diff between SphericalCubature versions 1.3 dated 2016-10-21 and 1.4 dated 2017-09-16
DESCRIPTION | 8 ++--- MD5 | 14 ++++---- NAMESPACE | 2 - R/SphericalCubature.R | 61 ++++++++++++++++++++++----------------- demo/SphericalCubature.R | 12 +++---- man/SphericalCubature-package.Rd | 8 +++-- man/SphericalMisc.Rd | 12 +++---- man/adaptIntegrateSphereTri.Rd | 14 ++++---- 8 files changed, 71 insertions(+), 60 deletions(-)
More information about SphericalCubature at CRAN
Permanent link
Title: Simulation of Diffusion Processes
Description: A package for symbolic and numerical computations on scalar and multivariate systems of stochastic differential equations. It provides users with a wide range of tools to simulate, estimate, analyze, and visualize the dynamics of these systems in both forms Itô and Stratonovich. Statistical analysis with Parallel Monte-Carlo and moment equations methods of SDE's. Enabled many searchers in different domains to use these equations to modeling practical problems in financial and actuarial modeling and other areas of application, e.g., modeling and simulate of first passage time problem in shallow water using the attractive center (Boukhetala K, 1996).
Author: Arsalane Chouaib Guidoum [cre, aut],
Kamal Boukhetala [aut]
Maintainer: Arsalane Chouaib Guidoum <acguidoum@usthb.dz>
Diff between Sim.DiffProc versions 3.7 dated 2017-03-25 and 3.8 dated 2017-09-16
Sim.DiffProc-3.7/Sim.DiffProc/NEWS |only Sim.DiffProc-3.7/Sim.DiffProc/R/rftpsde.R |only Sim.DiffProc-3.7/Sim.DiffProc/inst/doc/sde.R |only Sim.DiffProc-3.7/Sim.DiffProc/inst/doc/sde.Rmd |only Sim.DiffProc-3.7/Sim.DiffProc/inst/doc/sde.html |only Sim.DiffProc-3.7/Sim.DiffProc/man/bconfint.Rd |only Sim.DiffProc-3.7/Sim.DiffProc/man/rfptsde1d.Rd |only Sim.DiffProc-3.7/Sim.DiffProc/man/rfptsde2d.Rd |only Sim.DiffProc-3.7/Sim.DiffProc/man/rfptsde3d.Rd |only Sim.DiffProc-3.7/Sim.DiffProc/tests/sde.R |only Sim.DiffProc-3.7/Sim.DiffProc/vignettes/sde.Rmd |only Sim.DiffProc-3.8/Sim.DiffProc/DESCRIPTION | 21 Sim.DiffProc-3.8/Sim.DiffProc/MD5 | 174 + Sim.DiffProc-3.8/Sim.DiffProc/NAMESPACE | 168 + Sim.DiffProc-3.8/Sim.DiffProc/R/ABM.R | 32 Sim.DiffProc-3.8/Sim.DiffProc/R/BB.R | 12 Sim.DiffProc-3.8/Sim.DiffProc/R/BM.R | 6 Sim.DiffProc-3.8/Sim.DiffProc/R/Euler.R | 93 Sim.DiffProc-3.8/Sim.DiffProc/R/GBM.R | 14 Sim.DiffProc-3.8/Sim.DiffProc/R/Heun.R | 109 - Sim.DiffProc-3.8/Sim.DiffProc/R/MCM.sde.R |only Sim.DiffProc-3.8/Sim.DiffProc/R/MEM.sde.r |only Sim.DiffProc-3.8/Sim.DiffProc/R/Milstein.R | 108 - Sim.DiffProc-3.8/Sim.DiffProc/R/PredCorr.R | 132 + Sim.DiffProc-3.8/Sim.DiffProc/R/RK.R | 163 + Sim.DiffProc-3.8/Sim.DiffProc/R/SMilstein.R | 198 +- Sim.DiffProc-3.8/Sim.DiffProc/R/STS.R | 222 +- Sim.DiffProc-3.8/Sim.DiffProc/R/bridgesde.R | 1343 ++++++++++---- Sim.DiffProc-3.8/Sim.DiffProc/R/dsde.r | 154 + Sim.DiffProc-3.8/Sim.DiffProc/R/fitsde.R | 2 Sim.DiffProc-3.8/Sim.DiffProc/R/ftpsde.R |only Sim.DiffProc-3.8/Sim.DiffProc/R/rsde.R | 68 Sim.DiffProc-3.8/Sim.DiffProc/R/snssde.R | 1268 +++++++++---- Sim.DiffProc-3.8/Sim.DiffProc/R/st.int.R | 246 +- Sim.DiffProc-3.8/Sim.DiffProc/R/utils.R | 627 ++---- Sim.DiffProc-3.8/Sim.DiffProc/R/zzz.r | 4 Sim.DiffProc-3.8/Sim.DiffProc/build/vignette.rds |binary Sim.DiffProc-3.8/Sim.DiffProc/demo/Sim.DiffProc.R | 155 + Sim.DiffProc-3.8/Sim.DiffProc/inst/NEWS.Rd |only Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/Sim.DiffProc.R | 16 Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/Sim.DiffProc.Rmd | 38 Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/Sim.DiffProc.html | 77 Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/bridgesde.R |only Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/bridgesde.Rmd |only Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/bridgesde.html |only Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/fitsde.R | 79 Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/fitsde.Rmd | 101 - Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/fitsde.html | 515 ++--- Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/fptsde.R | 242 ++ Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/fptsde.Rmd | 370 +++ Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/fptsde.html | 742 +++++-- Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/mcmsde.R |only Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/mcmsde.Rmd |only Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/mcmsde.html |only Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/snssde.R |only Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/snssde.Rmd |only Sim.DiffProc-3.8/Sim.DiffProc/inst/doc/snssde.html |only Sim.DiffProc-3.8/Sim.DiffProc/man/ABM.Rd | 20 Sim.DiffProc-3.8/Sim.DiffProc/man/HWV.Rd | 6 Sim.DiffProc-3.8/Sim.DiffProc/man/Irates.Rd | 22 Sim.DiffProc-3.8/Sim.DiffProc/man/MCM.sde.Rd |only Sim.DiffProc-3.8/Sim.DiffProc/man/MEM.sde.Rd |only Sim.DiffProc-3.8/Sim.DiffProc/man/Sim.DiffProc-package.Rd | 259 +- Sim.DiffProc-3.8/Sim.DiffProc/man/bridgesde1d.Rd | 94 Sim.DiffProc-3.8/Sim.DiffProc/man/bridgesde2d.Rd | 91 Sim.DiffProc-3.8/Sim.DiffProc/man/bridgesde3d.Rd | 80 Sim.DiffProc-3.8/Sim.DiffProc/man/figures |only Sim.DiffProc-3.8/Sim.DiffProc/man/fitsde.Rd | 6 Sim.DiffProc-3.8/Sim.DiffProc/man/fptsde1d.Rd |only Sim.DiffProc-3.8/Sim.DiffProc/man/fptsde2d.Rd |only Sim.DiffProc-3.8/Sim.DiffProc/man/fptsde3d.Rd |only Sim.DiffProc-3.8/Sim.DiffProc/man/moment.Rd |only Sim.DiffProc-3.8/Sim.DiffProc/man/plot2d.Rd | 4 Sim.DiffProc-3.8/Sim.DiffProc/man/rsde1d.Rd | 77 Sim.DiffProc-3.8/Sim.DiffProc/man/rsde2d.Rd | 114 - Sim.DiffProc-3.8/Sim.DiffProc/man/rsde3d.Rd | 109 - Sim.DiffProc-3.8/Sim.DiffProc/man/snssde1d.Rd | 96 - Sim.DiffProc-3.8/Sim.DiffProc/man/snssde2d.Rd | 95 Sim.DiffProc-3.8/Sim.DiffProc/man/snssde3d.Rd | 97 - Sim.DiffProc-3.8/Sim.DiffProc/man/st.int.Rd | 94 Sim.DiffProc-3.8/Sim.DiffProc/src/Sim.DiffProc.c | 2 Sim.DiffProc-3.8/Sim.DiffProc/src/Sim.DiffProc.h | 2 Sim.DiffProc-3.8/Sim.DiffProc/src/init.c | 2 Sim.DiffProc-3.8/Sim.DiffProc/src/locale.h | 2 Sim.DiffProc-3.8/Sim.DiffProc/tests/bridgesde.R | 20 Sim.DiffProc-3.8/Sim.DiffProc/tests/fptsde.R | 50 Sim.DiffProc-3.8/Sim.DiffProc/tests/rsde.R | 38 Sim.DiffProc-3.8/Sim.DiffProc/tests/snssde.R |only Sim.DiffProc-3.8/Sim.DiffProc/vignettes/Figures |only Sim.DiffProc-3.8/Sim.DiffProc/vignettes/Sim.DiffProc.Rmd | 38 Sim.DiffProc-3.8/Sim.DiffProc/vignettes/bridgesde.Rmd |only Sim.DiffProc-3.8/Sim.DiffProc/vignettes/fitsde.Rmd | 101 - Sim.DiffProc-3.8/Sim.DiffProc/vignettes/fptsde.Rmd | 370 +++ Sim.DiffProc-3.8/Sim.DiffProc/vignettes/mcmsde.Rmd |only Sim.DiffProc-3.8/Sim.DiffProc/vignettes/snssde.Rmd |only 95 files changed, 6246 insertions(+), 3142 deletions(-)
Title: Colored Terminal Output
Description: Colored terminal output on terminals that support 'ANSI'
color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI'
color support is automatically detected. Colors and highlighting can
be combined and nested. New styles can also be created easily.
This package was inspired by the 'chalk' 'JavaScript' project.
Author: Gábor Csárdi [aut, cre],
Brodie Gaslam [ctb]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between crayon versions 1.3.2 dated 2016-06-28 and 1.3.4 dated 2017-09-16
DESCRIPTION | 14 ++--- MD5 | 75 ++++++++++++++------------- NAMESPACE | 5 + R/ansi-256.r | 2 R/combine.r | 11 ++-- R/disposable.r | 4 + R/has_ansi.r | 4 - R/has_color.r | 104 +++++++++++++++++++++++++++---------- R/machinery.r | 55 +++++++++----------- R/show.r | 21 +++++-- R/string.r | 24 ++++++++ R/string_operations.r | 101 +++++++++++++++++++++++++++++------- R/style-var.r | 6 +- R/utils.r | 59 ++++++++++++--------- inst/NEWS.md | 9 +++ inst/README.markdown | 10 +-- man/chr.Rd | 5 - man/col_align.Rd |only man/col_nchar.Rd | 12 ++-- man/col_strsplit.Rd | 14 ++--- man/col_substr.Rd | 10 +-- man/col_substring.Rd | 10 +-- man/combine_styles.Rd | 5 - man/concat.Rd | 3 - man/crayon.Rd | 107 +++++++++++++++++++-------------------- man/drop_style.Rd | 1 man/has_color.Rd | 48 ++++++++++------- man/has_style.Rd | 7 +- man/make_style.Rd | 31 +++++------ man/num_colors.Rd | 8 +- man/show_ansi_colors.Rd | 1 man/start.crayon.Rd | 3 - man/strip_style.Rd | 1 man/style.Rd | 5 - man/styles.Rd | 5 - tests/testthat.R | 8 +- tests/testthat/test-ansi256.R |only tests/testthat/test-combine.R |only tests/testthat/test-has-color.r | 99 ++++++++++++++++++++---------------- tests/testthat/test-operations.R | 45 ++++++++++++++++ 40 files changed, 578 insertions(+), 354 deletions(-)
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical
measures, which otherwise could only be calculated with additional
effort (like standard errors or root mean squared errors). Second,
these shortcut functions are generic (if appropriate), and can be
applied not only to vectors, but also to other objects as well
(e.g., the Coefficient of Variation can be computed for vectors,
linear models, or linear mixed models; the r2()-function returns
the r-squared value for 'lm', 'glm', 'merMod' or 'lme' objects).
The focus of most functions lies on summary statistics or fit
measures for regression models, including generalized linear
models and mixed effects models. However, some of the functions
also deal with other statistical measures, like Cronbach's Alpha,
Cramer's V, Phi etc.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.11.0 dated 2017-08-21 and 0.11.1 dated 2017-09-16
sjstats-0.11.0/sjstats/man/get_model_pval.Rd |only sjstats-0.11.1/sjstats/DESCRIPTION | 10 sjstats-0.11.1/sjstats/MD5 | 54 sjstats-0.11.1/sjstats/NAMESPACE | 12 sjstats-0.11.1/sjstats/NEWS | 373 ++- sjstats-0.11.1/sjstats/NEWS.md | 351 +-- sjstats-0.11.1/sjstats/R/HDI.R | 117 + sjstats-0.11.1/sjstats/R/S3-methods.R | 1156 ++++++------ sjstats-0.11.1/sjstats/R/converge_ok.R | 48 sjstats-0.11.1/sjstats/R/cv_error.R | 9 sjstats-0.11.1/sjstats/R/grpmean.R | 530 ++--- sjstats-0.11.1/sjstats/R/helpfunctions.R | 9 sjstats-0.11.1/sjstats/R/icc.R | 686 +++---- sjstats-0.11.1/sjstats/R/inequ_trends.R | 9 sjstats-0.11.1/sjstats/R/merMod_p.R | 18 sjstats-0.11.1/sjstats/R/se.R | 638 +++--- sjstats-0.11.1/sjstats/R/std_b.R | 22 sjstats-0.11.1/sjstats/R/typical.R | 141 - sjstats-0.11.1/sjstats/build/partial.rdb |binary sjstats-0.11.1/sjstats/build/vignette.rds |binary sjstats-0.11.1/sjstats/inst/doc/anova-statistics.html | 4 sjstats-0.11.1/sjstats/inst/doc/mixedmodels-statistics.R |only sjstats-0.11.1/sjstats/inst/doc/mixedmodels-statistics.Rmd |only sjstats-0.11.1/sjstats/inst/doc/mixedmodels-statistics.html |only sjstats-0.11.1/sjstats/man/converge_ok.Rd | 4 sjstats-0.11.1/sjstats/man/hdi.Rd | 35 sjstats-0.11.1/sjstats/man/p_value.Rd |only sjstats-0.11.1/sjstats/man/re_var.Rd | 7 sjstats-0.11.1/sjstats/man/std_beta.Rd | 4 sjstats-0.11.1/sjstats/man/typical_value.Rd | 6 sjstats-0.11.1/sjstats/vignettes/mixedmodels-statistics.Rmd |only 31 files changed, 2284 insertions(+), 1959 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focus on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
When working with 'PowerPoint' presentations, slides can be added or removed; shapes inside
slides can also be added or removed. When working with 'Word' documents, a cursor can be
used to help insert or delete content at a specific location in the document. The package
does not require any installation of Microsoft product to be able to write Microsoft files.
Author: David Gohel [aut, cre]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.1.6 dated 2017-08-30 and 0.1.7 dated 2017-09-16
officer-0.1.6/officer/inst/template/chart.xml |only officer-0.1.7/officer/DESCRIPTION | 6 +-- officer-0.1.7/officer/MD5 | 49 +++++++++++++------------ officer-0.1.7/officer/NAMESPACE | 4 ++ officer-0.1.7/officer/NEWS | 13 ++++++ officer-0.1.7/officer/R/RcppExports.R | 8 ++-- officer-0.1.7/officer/R/docx_add.R | 29 +++++++++++++- officer-0.1.7/officer/R/docx_cursor.R | 2 - officer-0.1.7/officer/R/docx_document.R | 27 +++++++++++++ officer-0.1.7/officer/R/ppt_classes.R | 6 ++- officer-0.1.7/officer/R/ppt_ph_with.R | 4 +- officer-0.1.7/officer/R/ppt_ph_with_at.R | 3 + officer-0.1.7/officer/R/ppt_table_shape.R | 4 +- officer-0.1.7/officer/R/read_docx.R | 26 +++++++++++++ officer-0.1.7/officer/R/read_pptx.R | 2 - officer-0.1.7/officer/R/utils.R | 3 + officer-0.1.7/officer/README.md | 5 ++ officer-0.1.7/officer/inst/doc/powerpoint.html | 22 +++++------ officer-0.1.7/officer/inst/officerlogo.svg |only officer-0.1.7/officer/inst/template/sheet.xml |only officer-0.1.7/officer/man/body_add_table.Rd | 8 ++-- officer-0.1.7/officer/man/body_replace_at.Rd |only officer-0.1.7/officer/man/cursor.Rd | 2 - officer-0.1.7/officer/man/docx_bookmarks.Rd |only officer-0.1.7/officer/man/ph_with_table.Rd | 14 ++++--- officer-0.1.7/officer/man/shortcuts.Rd | 1 officer-0.1.7/officer/src/RcppExports.cpp | 18 +++++---- officer-0.1.7/officer/src/ml_data_frame.cpp | 36 ++++++++++-------- 28 files changed, 206 insertions(+), 86 deletions(-)
Title: Modeling Data with Functional Programming
Description: A language extension to efficiently write functional programs in R. Syntax extensions include multi-part function definitions, pattern matching, guard statements, built-in (optional) type safety.
Author: Brian Lee Yung Rowe
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between lambda.r versions 1.1.9 dated 2016-07-10 and 1.2 dated 2017-09-16
DESCRIPTION | 8 ++-- MD5 | 13 +++---- NAMESPACE | 1 R/framework.R | 61 +++++++++++++++++++++++++-------- inst/unitTests/runit.function_args.1.R | 14 +++++++ inst/unitTests/runit.infix.1.R |only man/framework.Rd | 1 man/lambda.r-package.Rd | 22 +++++++++-- 8 files changed, 91 insertions(+), 29 deletions(-)
Title: Furniture for Quantitative Scientists
Description: Contains three main functions (i.e., three pieces of furniture):
table1() which produces a well-formatted table of descriptives common as Table 1
in research articles, tableC() which produces a well-formatted table of correlations,
and washer() which is helpful in cleaning up the data. In addition,
long() and wide(), built on the stats::reshape(), can help reformat the data.
These furniture functions are designed to simplify common tasks in
quantitative analysis. Other data summary and cleaning tools are also available.
Author: Tyson Barrett [aut, cre],
Emily Brignone [aut]
Maintainer: Tyson Barrett <t.barrett@aggiemail.usu.edu>
Diff between furniture versions 1.5.4 dated 2017-07-08 and 1.6.0 dated 2017-09-16
furniture-1.5.4/furniture/man/table1_.Rd |only furniture-1.6.0/furniture/DESCRIPTION | 13 +- furniture-1.6.0/furniture/MD5 | 23 ++-- furniture-1.6.0/furniture/NAMESPACE | 4 furniture-1.6.0/furniture/NEWS.md | 9 + furniture-1.6.0/furniture/R/Table1.R | 78 +++++++------- furniture-1.6.0/furniture/R/long_wide.R | 8 - furniture-1.6.0/furniture/R/table_cor.R |only furniture-1.6.0/furniture/R/zzz.R | 2 furniture-1.6.0/furniture/inst/doc/Furniture.html | 56 +++++----- furniture-1.6.0/furniture/inst/doc/Table1.html | 6 - furniture-1.6.0/furniture/man/selecting.Rd |only furniture-1.6.0/furniture/man/table1.Rd | 9 - furniture-1.6.0/furniture/man/tableC.Rd |only furniture-1.6.0/furniture/tests/testthat/test_table_cor.R |only 15 files changed, 118 insertions(+), 90 deletions(-)
Title: Advanced Forest Plot Using 'grid' Graphics
Description: A forest plot that allows for
multiple confidence intervals per row,
custom fonts for each text element,
custom confidence intervals,
text mixed with expressions, and more.
The aim is to extend the use of forest plots beyond meta-analyses.
This is a more general version of the original 'rmeta' package's forestplot()
function and relies heavily on the 'grid' package.
Author: Max Gordon [aut, cre],
Thomas Lumley [aut, ctb]
Maintainer: Max Gordon <max@gforge.se>
Diff between forestplot versions 1.7 dated 2017-01-07 and 1.7.2 dated 2017-09-16
DESCRIPTION | 10 +-- MD5 | 80 ++++++++++++------------- NAMESPACE | 1 NEWS | 8 ++ R/forestplot.R | 1 R/private.R | 27 ++++---- build/vignette.rds |binary inst/doc/forestplot.html | 8 +- man/HRQoL.Rd | 1 man/forestplot.Rd | 11 +-- man/fpColors.Rd | 9 +- man/fpDrawCI.Rd | 15 ++-- man/fpLegend.Rd | 3 man/fpTxtGp.Rd | 2 man/getTicks.Rd | 1 man/heightDetails.xaxis.Rd | 1 man/prFpConvertMultidimArray.Rd | 1 man/prFpDrawLegend.Rd | 1 man/prFpDrawLine.Rd | 1 man/prFpDrawLines.Rd | 1 man/prFpFetchRowLabel.Rd | 1 man/prFpFindWidestGrob.Rd | 1 man/prFpGetConfintFnList.Rd | 1 man/prFpGetGraphTicksAndClips.Rd | 1 man/prFpGetLabels.Rd | 1 man/prFpGetLayoutVP.Rd | 1 man/prFpGetLegendBoxPosition.Rd | 1 man/prFpGetLegendGrobs.Rd | 1 man/prFpGetLines.Rd | 1 man/prFpPrepareLegendMarker.Rd | 5 - man/prFpPrintLabels.Rd | 1 man/prFpPrintXaxis.Rd | 1 man/prFpValidateLabelList.Rd | 1 man/prFpXrange.Rd | 1 man/prGetTextGrobCex.Rd | 1 man/prGparMerge.Rd | 1 man/prGridPlotTitle.Rd | 1 man/prListRep.Rd | 1 man/prPopulateList.Rd | 1 man/prPushMarginViewport.Rd | 1 tests/testthat/Rplots.pdf |only tests/testthat/test-prFpConvertMultidimArray.R |only 42 files changed, 97 insertions(+), 109 deletions(-)
Title: Dynamic Hazard Models using State Space Models
Description: Contains functions that lets you fit dynamic hazard models using
state space models. The first implemented model is described in Fahrmeir
(1992) <doi:10.1080/01621459.1992.10475232> and Fahrmeir (1994)
<doi:10.1093/biomet/81.2.317>. Extensions hereof are available where the
Extended Kalman filter is replaced by an unscented Kalman filter and other
options including particle filters.
Author: Benjamin Christoffersen [cre, aut],
Alan Miller [cph],
Anthony Williams [cph],
Boost developers [cph],
R-core [cph]
Maintainer: Benjamin Christoffersen <boennecd@gmail.com>
Diff between dynamichazard versions 0.3.5 dated 2017-07-15 and 0.4.0 dated 2017-09-16
dynamichazard-0.3.5/dynamichazard/src/LAPACK_BLAS_wrapper.cpp |only dynamichazard-0.3.5/dynamichazard/src/LAPACK_BLAS_wrapper.h |only dynamichazard-0.3.5/dynamichazard/src/arma_utils.cpp |only dynamichazard-0.3.5/dynamichazard/src/arma_utils.h |only dynamichazard-0.3.5/dynamichazard/src/dchur.f |only dynamichazard-0.3.5/dynamichazard/src/ddhazard_EKF_solver.cpp |only dynamichazard-0.3.5/dynamichazard/src/ddhazard_GMA_solver.cpp |only dynamichazard-0.3.5/dynamichazard/src/ddhazard_SMA_solver.cpp |only dynamichazard-0.3.5/dynamichazard/src/ddhazard_UKF_solver.cpp |only dynamichazard-0.3.5/dynamichazard/src/ddhazard_problem_data.h |only dynamichazard-0.3.5/dynamichazard/tests/testthat/test_LAPACK_BLAS_wrapper.R |only dynamichazard-0.3.5/dynamichazard/tests/testthat/testfixed_effects_like_recursive_least_squares.R |only dynamichazard-0.3.5/dynamichazard/tests/testthat/testfixed_terms_est_in_M_step.R |only dynamichazard-0.4.0/dynamichazard/DESCRIPTION | 18 dynamichazard-0.4.0/dynamichazard/MD5 | 262 +++--- dynamichazard-0.4.0/dynamichazard/NAMESPACE | 6 dynamichazard-0.4.0/dynamichazard/NEWS.md | 5 dynamichazard-0.4.0/dynamichazard/R/PF.R |only dynamichazard-0.4.0/dynamichazard/R/RcppExports.R | 94 +- dynamichazard-0.4.0/dynamichazard/R/boot_est.R | 2 dynamichazard-0.4.0/dynamichazard/R/ddhazard.R | 389 +++++----- dynamichazard-0.4.0/dynamichazard/R/loglike.R | 41 - dynamichazard-0.4.0/dynamichazard/R/options.R | 12 dynamichazard-0.4.0/dynamichazard/R/plot.R | 94 ++ dynamichazard-0.4.0/dynamichazard/R/static_glm.R | 63 + dynamichazard-0.4.0/dynamichazard/R/test_utils.R | 66 - dynamichazard-0.4.0/dynamichazard/build/vignette.rds |binary dynamichazard-0.4.0/dynamichazard/inst/doc/Bootstrap_illustration.pdf |binary dynamichazard-0.4.0/dynamichazard/inst/doc/Comparing_methods_for_logistic_models.R | 108 +- dynamichazard-0.4.0/dynamichazard/inst/doc/Comparing_methods_for_logistic_models.Rmd | 111 +- dynamichazard-0.4.0/dynamichazard/inst/doc/Comparing_methods_for_logistic_models.pdf |binary dynamichazard-0.4.0/dynamichazard/inst/doc/Diagnostics.R | 33 dynamichazard-0.4.0/dynamichazard/inst/doc/Diagnostics.Rmd | 39 - dynamichazard-0.4.0/dynamichazard/inst/doc/Diagnostics.pdf |binary dynamichazard-0.4.0/dynamichazard/inst/doc/Particle_filtering.pdf |only dynamichazard-0.4.0/dynamichazard/inst/doc/Particle_filtering.pdf.asis |only dynamichazard-0.4.0/dynamichazard/inst/doc/Sim_study_with_logit.pdf |binary dynamichazard-0.4.0/dynamichazard/inst/doc/ddhazard.Rmd | 20 dynamichazard-0.4.0/dynamichazard/inst/doc/ddhazard.pdf |binary dynamichazard-0.4.0/dynamichazard/inst/shiny/app.R | 14 dynamichazard-0.4.0/dynamichazard/man/PF_EM.Rd |only dynamichazard-0.4.0/dynamichazard/man/ddhazard.Rd | 3 dynamichazard-0.4.0/dynamichazard/man/logLik.PF_clouds.Rd |only dynamichazard-0.4.0/dynamichazard/man/logLik.fahrmeier_94.Rd |only dynamichazard-0.4.0/dynamichazard/man/plot.PF_EM.Rd |only dynamichazard-0.4.0/dynamichazard/man/plot.PF_clouds.Rd |only dynamichazard-0.4.0/dynamichazard/man/static_glm.Rd | 14 dynamichazard-0.4.0/dynamichazard/src/BLAS_LAPACK |only dynamichazard-0.4.0/dynamichazard/src/Makevars | 32 dynamichazard-0.4.0/dynamichazard/src/Makevars.win | 50 - dynamichazard-0.4.0/dynamichazard/src/PF |only dynamichazard-0.4.0/dynamichazard/src/PF.cpp |only dynamichazard-0.4.0/dynamichazard/src/R_BLAS_LAPACK.h |only dynamichazard-0.4.0/dynamichazard/src/RcppExports.cpp | 347 ++++++-- dynamichazard-0.4.0/dynamichazard/src/arma_BLAS_LAPACK.h |only dynamichazard-0.4.0/dynamichazard/src/arma_n_rcpp.h | 29 dynamichazard-0.4.0/dynamichazard/src/ddhazard |only dynamichazard-0.4.0/dynamichazard/src/ddhazard.h | 125 +-- dynamichazard-0.4.0/dynamichazard/src/ddhazard_fit.cpp | 63 - dynamichazard-0.4.0/dynamichazard/src/estimate_fixed_effects_M_step.h | 7 dynamichazard-0.4.0/dynamichazard/src/exp_model_funcs.h | 122 --- dynamichazard-0.4.0/dynamichazard/src/for_tests.cpp |only dynamichazard-0.4.0/dynamichazard/src/parallel_glm.cpp |only dynamichazard-0.4.0/dynamichazard/src/problem_data.h |only dynamichazard-0.4.0/dynamichazard/src/sample_funcs.cpp |only dynamichazard-0.4.0/dynamichazard/src/sample_funcs.h |only dynamichazard-0.4.0/dynamichazard/src/thread_pool.cpp |only dynamichazard-0.4.0/dynamichazard/src/thread_pool.h | 18 dynamichazard-0.4.0/dynamichazard/src/utils.cpp |only dynamichazard-0.4.0/dynamichazard/src/utils.h |only dynamichazard-0.4.0/dynamichazard/tests/testthat/helper.R | 109 ++ dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/AUX_normal_approx_w_cloud_mean_cloud_means.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/AUX_normal_approx_w_particles_cloud_means.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/Brier_AUX_normal_w_particles_cloud_means.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/E_step_fixed_exp_head_neck.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/E_step_fixed_head_neck.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/E_step_fixed_pbc.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/E_step_sim_EKF_order_two.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/E_step_sim_UKF.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/E_step_sim_exp_UKF.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/E_step_sim_exp_UKF_order_two.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/GMA_head_neck_cancer_o1.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/GMA_pbc_fixed_E_step.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/GMA_pbc_fixed_M_step.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/GMA_pbc_o1_exp.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/GMA_pbc_o2_logit.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/PF_head_neck_cloud_means.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/PF_head_neck_w_Brier_method_cloud_means.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/PF_normal_approx_w_cloud_mean_cloud_means.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/PF_normal_approx_w_particles_cloud_means.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/Rossi_pearson.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/Rossi_state.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/UKF1.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/UKF2.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/UKF4.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/UKF5.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/UKF6.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/boot1.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/boot2.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/boot3.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/boot4.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/boot_posterior_approx.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/boot_print.RDS.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/boot_print_two.RDS.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/bootstrap_filter_cloud_means.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/ddhazard_changed_by.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/ddhazard_exp_bin.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/ddhazard_exp_clip.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/ddhazard_exp_clip_w_jump.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/ddhazard_head_neck.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/fixed_terms1.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/fixed_terms_UKF.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/fixed_terms_UKF_exp.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/fixed_terms_pbc.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/hats_dym_Rossi.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/hats_dym_n_fixed_Rossi.RDS |binary 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dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/survival_lung_example_cloud_means.RDS |only dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/whas_pearson.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/previous_results/whas_state.RDS |binary dynamichazard-0.4.0/dynamichazard/tests/testthat/testUKF.R | 5 dynamichazard-0.4.0/dynamichazard/tests/testthat/test_GMA.R | 46 - dynamichazard-0.4.0/dynamichazard/tests/testthat/test_LAPACK_BLAS.R |only dynamichazard-0.4.0/dynamichazard/tests/testthat/test_PF.R |only dynamichazard-0.4.0/dynamichazard/tests/testthat/test_SMA.R | 10 dynamichazard-0.4.0/dynamichazard/tests/testthat/test_cpp_sample_funcs.R |only dynamichazard-0.4.0/dynamichazard/tests/testthat/test_cpp_utils.R |only dynamichazard-0.4.0/dynamichazard/tests/testthat/test_fixed_effects_in_E_step.R |only dynamichazard-0.4.0/dynamichazard/tests/testthat/test_fixed_effects_in_M_step.R |only dynamichazard-0.4.0/dynamichazard/tests/testthat/test_hatvalues.R | 8 dynamichazard-0.4.0/dynamichazard/tests/testthat/test_parallelglm.R |only dynamichazard-0.4.0/dynamichazard/tests/testthat/test_shiny_app.R | 50 - dynamichazard-0.4.0/dynamichazard/tests/testthat/testboot_est.R | 13 dynamichazard-0.4.0/dynamichazard/tests/testthat/testddhazard.R | 107 -- dynamichazard-0.4.0/dynamichazard/tests/testthat/testloglike.R | 136 +-- dynamichazard-0.4.0/dynamichazard/tests/testthat/testpredict.R | 55 - dynamichazard-0.4.0/dynamichazard/tests/testthat/testprint.R | 74 + dynamichazard-0.4.0/dynamichazard/tests/testthat/testresiduals.R | 4 dynamichazard-0.4.0/dynamichazard/tests/testthat/teststatic_glm.R | 88 +- dynamichazard-0.4.0/dynamichazard/tests/testthat/testweights.R | 2 dynamichazard-0.4.0/dynamichazard/vignettes/Comparing_methods_for_logistic_models.Rmd | 111 +- dynamichazard-0.4.0/dynamichazard/vignettes/Diagnostics.Rmd | 39 - dynamichazard-0.4.0/dynamichazard/vignettes/Particle_filtering.pdf.asis |only dynamichazard-0.4.0/dynamichazard/vignettes/ddhazard.Rmd | 20 152 files changed, 1663 insertions(+), 1401 deletions(-)
Title: Create 'roxygen2' Skeleton with Information from Function Script
Description: Create 'roxygen2' skeleton populated with information scraped from the within the function script.
Also creates field entries for imports in the 'DESCRIPTION' and import in the 'NAMESPACE' files.
Can be run from the R console or through the 'RStudio' 'addin' menu.
Author: c(person("Jonathan", "Sidi", email = "yonis@metrumrg.com", role = c("aut", "cre")),
person("Anton","Grishin",role = "ctb"),
person("Lorenzo","Busetto",role = "ctb"))
Maintainer: Jonathan Sidi <yonis@metrumrg.com>
Diff between sinew versions 0.3.1 dated 2017-08-30 and 0.3.2 dated 2017-09-16
sinew-0.3.1/sinew/R/zzz.R |only sinew-0.3.2/sinew/DESCRIPTION | 8 - sinew-0.3.2/sinew/MD5 | 28 ++-- sinew-0.3.2/sinew/NAMESPACE | 2 sinew-0.3.2/sinew/R/check_attach.R |only sinew-0.3.2/sinew/R/interOxyAddIn.R | 186 ++++++++++++++++++++++++-------- sinew-0.3.2/sinew/R/makeDictionary.R | 4 sinew-0.3.2/sinew/R/makeImport.R | 70 ++++++------ sinew-0.3.2/sinew/R/makeOxygen.R | 9 + sinew-0.3.2/sinew/R/moga.R | 41 +++++-- sinew-0.3.2/sinew/R/rm_oxylines.R |only sinew-0.3.2/sinew/R/untangle.R |only sinew-0.3.2/sinew/R/zzz.r |only sinew-0.3.2/sinew/build/sinew.pdf |binary sinew-0.3.2/sinew/man/makeDictionary.Rd | 2 sinew-0.3.2/sinew/man/makeImport.Rd | 6 - sinew-0.3.2/sinew/man/moga.Rd | 4 sinew-0.3.2/sinew/man/untangle.Rd |only 18 files changed, 249 insertions(+), 111 deletions(-)
Title: R Interface with Google Compute Engine
Description: Interact with the 'Google Compute Engine' API in R. Lets you create,
start and stop instances in the 'Google Cloud'. Support for preconfigured instances,
with templates for common R needs.
Author: Mark Edmondson [aut, cre],
Scott Chamberlain [ctb],
Winston Chang [ctb],
Henrik Bengtsson [ctb],
Jacki Novik [ctb]
Maintainer: Mark Edmondson <r@sunholo.com>
Diff between googleComputeEngineR versions 0.1.0 dated 2016-11-19 and 0.2.0 dated 2017-09-16
googleComputeEngineR-0.1.0/googleComputeEngineR/inst/cloudconfig/rstudio-hadleyverse.yaml |only googleComputeEngineR-0.1.0/googleComputeEngineR/man/gce_check_zone_op.Rd |only googleComputeEngineR-0.1.0/googleComputeEngineR/tests/testthat/auth.json |only googleComputeEngineR-0.1.0/googleComputeEngineR/tests/testthat/travis-ssh-key |only googleComputeEngineR-0.1.0/googleComputeEngineR/tests/testthat/travis-ssh-key.pub |only googleComputeEngineR-0.2.0/googleComputeEngineR/DESCRIPTION | 24 googleComputeEngineR-0.2.0/googleComputeEngineR/MD5 | 376 +++-- googleComputeEngineR-0.2.0/googleComputeEngineR/NAMESPACE | 26 googleComputeEngineR-0.2.0/googleComputeEngineR/NEWS.md | 20 googleComputeEngineR-0.2.0/googleComputeEngineR/R/build.R |only googleComputeEngineR-0.2.0/googleComputeEngineR/R/container.R | 338 ---- googleComputeEngineR-0.2.0/googleComputeEngineR/R/container_builder.R |only googleComputeEngineR-0.2.0/googleComputeEngineR/R/firewalls.R |only googleComputeEngineR-0.2.0/googleComputeEngineR/R/future.R | 2 googleComputeEngineR-0.2.0/googleComputeEngineR/R/gpus.R |only googleComputeEngineR-0.2.0/googleComputeEngineR/R/harbor_gce.R | 6 googleComputeEngineR-0.2.0/googleComputeEngineR/R/instances_admin.R | 14 googleComputeEngineR-0.2.0/googleComputeEngineR/R/machineType.R | 32 googleComputeEngineR-0.2.0/googleComputeEngineR/R/metadata.R | 38 googleComputeEngineR-0.2.0/googleComputeEngineR/R/networks.R | 2 googleComputeEngineR-0.2.0/googleComputeEngineR/R/operations.R | 244 +++ googleComputeEngineR-0.2.0/googleComputeEngineR/R/options.R | 32 googleComputeEngineR-0.2.0/googleComputeEngineR/R/print-methods.R | 81 + googleComputeEngineR-0.2.0/googleComputeEngineR/R/projects.R | 6 googleComputeEngineR-0.2.0/googleComputeEngineR/R/rstudio.R | 12 googleComputeEngineR-0.2.0/googleComputeEngineR/R/scheduler.R |only googleComputeEngineR-0.2.0/googleComputeEngineR/R/shiny.R | 134 + googleComputeEngineR-0.2.0/googleComputeEngineR/R/ssh.R | 203 +- googleComputeEngineR-0.2.0/googleComputeEngineR/R/ssh_admin.R | 107 + googleComputeEngineR-0.2.0/googleComputeEngineR/R/template.R |only googleComputeEngineR-0.2.0/googleComputeEngineR/R/utilities.R | 37 googleComputeEngineR-0.2.0/googleComputeEngineR/R/vms.R | 180 ++ googleComputeEngineR-0.2.0/googleComputeEngineR/build/vignette.rds |binary googleComputeEngineR-0.2.0/googleComputeEngineR/inst/cloudconfig/opencpu.yaml | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/cloudconfig/r-base.yaml | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/cloudconfig/rstudio.yaml | 5 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/cloudconfig/shiny.yaml | 3 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/creating-vms.Rmd | 9 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/creating-vms.html | 13 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/docker-ssh-futures.Rmd | 105 - googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/docker-ssh-futures.html | 88 - googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/docker.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/docker.html |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/example-workflows.Rmd | 697 ---------- googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/example-workflows.html | 588 -------- googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/installation-and-authentication.R |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/installation-and-authentication.Rmd | 69 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/installation-and-authentication.html | 75 - googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/massive-parallel.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/massive-parallel.html |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/opencpu-api-server.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/opencpu-api-server.html |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/persistent-rstudio.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/persistent-rstudio.html |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/remote-cluster.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/remote-cluster.html |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/rstudio-team.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/rstudio-team.html |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/scheduled-rscripts.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/scheduled-rscripts.html |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/shiny-app.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/shiny-app.html |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/single-scheduler.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/doc/single-scheduler.html |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/cloudDataLabR |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/demoDockerAppEngine |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/demoDockerScheduler |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/gceScheduler |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/googleAuthR-verse/Dockerfile | 13 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/googleComputeEngineR-worker |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/hadleyverse-crontab/Dockerfile | 11 googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/persistentRStudio |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/publicDocker.sh |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/dockerfiles/rstudio-gcloud |only googleComputeEngineR-0.2.0/googleComputeEngineR/inst/startupscripts |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/AttachedDisk.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/Disk.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/Instance.Rd | 5 googleComputeEngineR-0.2.0/googleComputeEngineR/man/Metadata.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/as.cluster.gce_instance.Rd | 3 googleComputeEngineR-0.2.0/googleComputeEngineR/man/as.container.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/as.gce_instance.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/as.gce_instance_name.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/as.gce_instance_name_one.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/auth_email.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/cat0.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/cli_tools.Rd | 3 googleComputeEngineR-0.2.0/googleComputeEngineR/man/container_logs.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/container_rm.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/container_running.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/container_update_info.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/containers.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/docker_build.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/docker_cmd.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/docker_cmd.gce_instance.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/docker_inspect.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/docker_pull.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/docker_run.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/error.message.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_attach_disk.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_auth.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_check_container.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_check_gpu.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_check_ssh.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_delete_disk.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_delete_firewall_rule.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_delete_op.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_delete_op.gce_global_operation.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_delete_op.gce_zone_operation.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_delete_zone_op.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_extract_projectzone.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_future_install_packages.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_disk.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_external_ip.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_firewall_rule.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_global_project.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_global_zone.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_image.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_image_family.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_instance.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_machinetype.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_metadata.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_network.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_op.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_op.gce_global_operation.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_op.gce_zone_operation.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_project.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_zone.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_get_zone_op.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_global_project.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_global_zone.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_disks.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_disks_all.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_firewall_rules.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_gpus.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_images.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_instances.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_machinetype.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_machinetype_all.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_networks.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_registry.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_zone_op.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_list_zones.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_make_boot_disk.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_make_disk.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_make_firewall_rule.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_make_firewall_webports.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_make_image_source_url.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_make_machinetype_url.Rd | 5 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_make_network.Rd | 3 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_metadata_env.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_pull_registry.Rd | 8 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_push_registry.Rd | 10 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_rstudio_adduser.Rd | 6 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_rstudio_password.Rd | 3 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_schedule_docker.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_set_machinetype.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_set_metadata.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_shiny_addapp.Rd | 59 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_shiny_listapps.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_shiny_logs.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_ssh.Rd | 55 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_ssh_addkeys.Rd | 38 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_ssh_browser.Rd | 5 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_ssh_setup.Rd | 50 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_tag_container.Rd | 10 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm.Rd | 72 - googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_container.Rd | 21 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_create.Rd | 22 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_delete.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_gpu.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_logs.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_reset.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_scheduler.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_start.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_stop.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_vm_template.Rd | 25 googleComputeEngineR-0.2.0/googleComputeEngineR/man/gce_wait.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/get_cloud_init_file.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/get_dockerfolder.Rd | 3 googleComputeEngineR-0.2.0/googleComputeEngineR/man/get_template_file.Rd | 6 googleComputeEngineR-0.2.0/googleComputeEngineR/man/idempotency.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.NullOb.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.error.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.gce_global_operation.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.gce_instance.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.gce_region_operation.Rd |only googleComputeEngineR-0.2.0/googleComputeEngineR/man/is.gce_zone_operation.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/localhost.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/myMessage.Rd | 5 googleComputeEngineR-0.2.0/googleComputeEngineR/man/rmNullObs.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/man/timestamp_to_r.Rd | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat.R | 5 googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_aa_auth.R | 14 googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_bb_create_vm.R | 71 - googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_cc_disks.R | 13 googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_firewalls.R |only googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_images.R | 11 googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_instances.R | 4 googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_machinetype.R | 5 googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_ssh.R | 1 googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_yyy_containers.R | 15 googleComputeEngineR-0.2.0/googleComputeEngineR/tests/testthat/test_zzz_cleanup.R | 5 googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/creating-vms.Rmd | 9 googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/docker-ssh-futures.Rmd | 105 - googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/docker.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/example-workflows.Rmd | 697 ---------- googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/installation-and-authentication.Rmd | 69 googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/massive-parallel.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/opencpu-api-server.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/persistent-rstudio.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/remote-cluster.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/rstudio-team.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/scheduled-rscripts.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/shiny-app.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/single-scheduler.Rmd |only googleComputeEngineR-0.2.0/googleComputeEngineR/vignettes/ssh-login.gif |only 217 files changed, 2004 insertions(+), 3101 deletions(-)
More information about googleComputeEngineR at CRAN
Permanent link
Title: 'Drat' R Archive Template
Description: Creation and use of R Repositories via helper functions
to insert packages into a repository, and to add repository information
to the current R session. Two primary types of repositories are support:
gh-pages at GitHub, as well as local repositories on either the same machine
or a local network. Drat is a recursive acronym: Drat R Archive Template.
Author: Dirk Eddelbuettel with contributions by Carl Boettiger, Sebastian
Gibb, Colin Gillespie, Jan Górecki, Matt Jones, Thomas Leeper, Steven Pav
and Jan Schulz.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between drat versions 0.1.2 dated 2016-10-28 and 0.1.3 dated 2017-09-16
ChangeLog | 16 +++++++++-- DESCRIPTION | 10 +++---- MD5 | 20 +++++++------- R/insertPackage.R | 50 ++++++++++++++++++----------------- README.md | 4 -- build/vignette.rds |binary inst/doc/CombiningDratAndTravis.html | 4 +- inst/doc/DratFAQ.html | 48 ++++++++++++++++++++++++++++++--- inst/doc/DratForPackageAuthors.html | 4 +- inst/doc/DratForPackageUsers.html | 4 +- inst/doc/WhyDrat.html | 4 +- 11 files changed, 108 insertions(+), 56 deletions(-)
Title: Templates for Data Frames
Description: Generate data frames from templates.
Author: William Michael Landau [aut, cre]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between wildcard versions 1.0.3 dated 2017-08-22 and 1.1.0 dated 2017-09-16
DESCRIPTION | 8 MD5 | 25 + R/package.R | 23 + R/ui.R | 75 ++++- R/utils.R | 40 ++- inst/doc/wildcard.R | 27 +- inst/doc/wildcard.Rmd | 30 +- inst/doc/wildcard.html | 434 ++++++++++++++++++++++++---------- man/expandrows.Rd | 7 man/wildcard-package.Rd | 23 + man/wildcard.Rd | 45 ++- tests/testthat/test-edge-cases.R | 27 ++ tests/testthat/test-include-exclude.R |only vignettes/wildcard.Rmd | 30 +- 14 files changed, 571 insertions(+), 223 deletions(-)
Title: Public Key Infrastucture for R Based on the X.509 Standard
Description: PKI functions such as verifying certificates, RSA encription and signing which can be used to build PKI infrastructure and perform cryptographic tasks.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between PKI versions 0.1-3 dated 2015-07-28 and 0.1-5.1 dated 2017-09-16
PKI-0.1-3/PKI/src/Makevars |only PKI-0.1-5.1/PKI/DESCRIPTION | 8 +-- PKI-0.1-5.1/PKI/MD5 | 23 +++++---- PKI-0.1-5.1/PKI/NAMESPACE | 4 - PKI-0.1-5.1/PKI/NEWS | 20 +++++++ PKI-0.1-5.1/PKI/R/crypt.R | 4 - PKI-0.1-5.1/PKI/R/tools.R | 2 PKI-0.1-5.1/PKI/configure |only PKI-0.1-5.1/PKI/configure.ac |only PKI-0.1-5.1/PKI/man/PKI.crypt.Rd | 8 ++- PKI-0.1-5.1/PKI/man/PKI.random.Rd |only PKI-0.1-5.1/PKI/src/Makevars.in |only PKI-0.1-5.1/PKI/src/config.h.in |only PKI-0.1-5.1/PKI/src/pki-x509.c | 97 ++++++++++++++++++++++++++++++-------- PKI-0.1-5.1/PKI/src/pki.h | 1 PKI-0.1-5.1/PKI/src/register.c |only 16 files changed, 127 insertions(+), 40 deletions(-)
Title: Ethnicity Annotation from Whole Exome Sequencing Data
Description: Reliable and rapid ethnicity annotation from whole exome sequencing data.
Author: Alessandro Romanel
Maintainer: Alessandro Romanel <alessandro.romanel@unitn.it>
Diff between EthSEQ versions 2.1.0 dated 2017-07-23 and 2.1.1 dated 2017-09-16
EthSEQ-2.1.0/EthSEQ/README.md |only EthSEQ-2.1.1/EthSEQ/DESCRIPTION | 6 ++-- EthSEQ-2.1.1/EthSEQ/MD5 | 25 +++++++++---------- EthSEQ-2.1.1/EthSEQ/NEWS | 6 ++++ EthSEQ-2.1.1/EthSEQ/R/aseq_Run.R | 4 ++- EthSEQ-2.1.1/EthSEQ/R/create_Target_Model.R | 10 ++++++- EthSEQ-2.1.1/EthSEQ/R/ethseq_Analysis.R | 8 +++--- EthSEQ-2.1.1/EthSEQ/R/ethseq_RM.R | 2 + EthSEQ-2.1.1/EthSEQ/build/vignette.rds |binary EthSEQ-2.1.1/EthSEQ/inst/doc/EthSEQ.R | 3 +- EthSEQ-2.1.1/EthSEQ/inst/doc/EthSEQ.Rmd | 3 +- EthSEQ-2.1.1/EthSEQ/inst/doc/EthSEQ.html | 36 ++++++++++++++-------------- EthSEQ-2.1.1/EthSEQ/man/ethseq.Analysis.Rd | 6 +++- EthSEQ-2.1.1/EthSEQ/vignettes/EthSEQ.Rmd | 3 +- 14 files changed, 68 insertions(+), 44 deletions(-)
Title: Estimating Hidden Population Size using Respondent Driven
Sampling Data
Description: An integrated set of tools to estimate the size of a networked
population based on respondent-driven sampling data. The package is part of the
"RDS Analyst" suite of packages for the analysis of respondent-driven sampling
data.
Author: Mark S. Handcock [aut, cre, cph],
Krista J. Gile [aut, cph]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between sspse versions 0.5-1 dated 2015-04-22 and 0.5-2 dated 2017-09-16
DESCRIPTION | 16 +++--- MD5 | 72 ++++++++++++++-------------- NAMESPACE | 5 + R/ak.core.R | 2 R/beginendparallel.R | 8 +-- R/bgk_kde.R | 9 +-- R/cmp.natural.R | 2 R/cmputilities.R | 2 R/dsizeprior.R | 26 +++++----- R/kjgsizefunctions.R | 4 - R/likelihoodsize.R | 6 +- R/plot.sspse.R | 113 +++++++++++++++++++++++---------------------- R/posnbinom.R | 4 - R/pospln.R | 4 - R/posteriornbinom.R | 4 - R/posteriorsize.R | 37 ++++++++++---- R/print.summary.sspse.R | 2 R/priorsize.R | 8 +-- R/sspse-package.R | 5 - R/sspse.utilities.R | 12 ++-- R/summary.size.R | 2 inst/CITATION | 4 - man/beginparallel.Rd | 15 +++-- man/dsizeprior.Rd | 12 ++-- man/plot.sspse.Rd | 21 ++++---- man/posize_warning.Rd |only man/posteriorsize.Rd | 19 +++---- man/print.summary.sspse.Rd | 21 ++++---- man/sspse-package.Rd | 23 ++++----- man/summary.sspse.Rd | 11 ++-- src/dis.c | 4 - src/mcmc.c | 6 +- src/posteriornbinom.c | 2 src/posteriorpln.c | 2 src/posteriorplndisease.c | 2 src/size.c | 2 src/size.older.c | 6 +- src/sspse_init.c |only 38 files changed, 264 insertions(+), 229 deletions(-)
Title: An Individual-Based Population Genetic Simulation Environment
Description: An interface between R and the metasim simulation engine.
The simulation environment is documented in: "Strand, A.(2002) <DOI:10.1046/j.1471-8286.2002.00208.x> Metasim 1.0: an individual-based environment for simulating population genetics of
complex population dynamics. Mol. Ecol. Notes.
Please see the vignettes CreatingLandscapes and Simulating to get some ideas on how to use the packages.
See the rmetasim vignette to get an overview and to see important changes to the
code in the most recent version.
Author: Allan Strand <stranda@cofc.edu>,
James Niehaus
Maintainer: Allan Strand <stranda@cofc.edu>
Diff between rmetasim versions 3.0.5 dated 2016-04-09 and 3.1.2 dated 2017-09-16
rmetasim-3.0.5/rmetasim/src/Eigen.cc |only rmetasim-3.0.5/rmetasim/src/Eigen.h |only rmetasim-3.1.2/rmetasim/CHANGELOG | 16 rmetasim-3.1.2/rmetasim/DESCRIPTION | 8 rmetasim-3.1.2/rmetasim/MD5 | 62 - rmetasim-3.1.2/rmetasim/R/create_landscape.R | 27 rmetasim-3.1.2/rmetasim/R/is_landscape.R | 31 rmetasim-3.1.2/rmetasim/R/lambda.R | 9 rmetasim-3.1.2/rmetasim/R/landscape.ind.freq.R | 6 rmetasim-3.1.2/rmetasim/R/landscape.mig.matrix.R | 2 rmetasim-3.1.2/rmetasim/build/vignette.rds |binary rmetasim-3.1.2/rmetasim/inst/doc/ApplyCarryToStage.R |only rmetasim-3.1.2/rmetasim/inst/doc/ApplyCarryToStage.Rmd |only rmetasim-3.1.2/rmetasim/inst/doc/ApplyCarryToStage.html |only rmetasim-3.1.2/rmetasim/inst/doc/CreatingLandscapes.html | 696 ++++++++----- rmetasim-3.1.2/rmetasim/inst/doc/Sexuality-and-mating.R |only rmetasim-3.1.2/rmetasim/inst/doc/Sexuality-and-mating.Rmd |only rmetasim-3.1.2/rmetasim/inst/doc/Sexuality-and-mating.html |only rmetasim-3.1.2/rmetasim/inst/doc/Simulating.html | 510 ++++++--- rmetasim-3.1.2/rmetasim/inst/doc/rmetasim.html | 242 +++- rmetasim-3.1.2/rmetasim/man/landscape.new.intparam.Rd | 10 rmetasim-3.1.2/rmetasim/src/AlleleObj.cc | 13 rmetasim-3.1.2/rmetasim/src/AlleleObj.h | 1 rmetasim-3.1.2/rmetasim/src/Democlass.cc | 6 rmetasim-3.1.2/rmetasim/src/Landscape.cc | 14 rmetasim-3.1.2/rmetasim/src/Landscape.h | 13 rmetasim-3.1.2/rmetasim/src/Makevars | 8 rmetasim-3.1.2/rmetasim/src/PackedIndividual.h | 4 rmetasim-3.1.2/rmetasim/src/RandLib.cc | 6 rmetasim-3.1.2/rmetasim/src/const.h | 2 rmetasim-3.1.2/rmetasim/src/metasim.h | 2 rmetasim-3.1.2/rmetasim/src/rmetasim.cc | 24 rmetasim-3.1.2/rmetasim/src/rmetasim.h | 35 rmetasim-3.1.2/rmetasim/vignettes/ApplyCarryToStage.Rmd |only rmetasim-3.1.2/rmetasim/vignettes/Sexuality-and-mating.Rmd |only rmetasim-3.1.2/rmetasim/vignettes/dioecious-lifecycle.fig |only rmetasim-3.1.2/rmetasim/vignettes/dioecious-lifecycle.png |only rmetasim-3.1.2/rmetasim/vignettes/simple-lifecycle.fig |only rmetasim-3.1.2/rmetasim/vignettes/simple-lifecycle.png |only 39 files changed, 1239 insertions(+), 508 deletions(-)
Title: Tables so Beautifully Fine-Tuned You Will Believe It's Magic
Description: The introduction of the 'broom' package has made converting model
objects into data frames as simple as a single function. While the 'broom'
package focuses on providing tidy data frames that can be used in advanced
analysis, it deliberately stops short of providing functionality for reporting
models in publication-ready tables. 'pixiedust' provides this functionality with
a programming interface intended to be similar to 'ggplot2's system of layers
with fine tuned control over each cell of the table. Options for output include
printing to the console and to the common markdown formats (markdown, HTML, and
LaTeX). With a little 'pixiedust' (and happy thoughts) tables can really fly.
Author: Benjamin Nutter [aut, cre],
David Kretch [ctb]
Maintainer: Benjamin Nutter <nutter@battelle.org>
Diff between pixiedust versions 0.8.0 dated 2017-08-26 and 0.8.1 dated 2017-09-16
pixiedust-0.8.0/pixiedust/R/assert_match_arg.R |only pixiedust-0.8.0/pixiedust/man/assert_match_arg.Rd |only pixiedust-0.8.1/pixiedust/DESCRIPTION | 14 pixiedust-0.8.1/pixiedust/MD5 | 162 +++---- pixiedust-0.8.1/pixiedust/NAMESPACE | 14 pixiedust-0.8.1/pixiedust/R/dust.R | 4 pixiedust-0.8.1/pixiedust/R/get_dust_part.R | 8 pixiedust-0.8.1/pixiedust/R/pval_string.R | 41 +- pixiedust-0.8.1/pixiedust/R/redust.R | 2 pixiedust-0.8.1/pixiedust/R/sprinkle.R | 11 pixiedust-0.8.1/pixiedust/R/sprinkle_align.R | 34 - pixiedust-0.8.1/pixiedust/R/sprinkle_bg.R | 23 - pixiedust-0.8.1/pixiedust/R/sprinkle_bg_pattern.R | 59 -- pixiedust-0.8.1/pixiedust/R/sprinkle_bookdown.R | 10 pixiedust-0.8.1/pixiedust/R/sprinkle_border.R | 59 -- pixiedust-0.8.1/pixiedust/R/sprinkle_border_collapse.R | 11 pixiedust-0.8.1/pixiedust/R/sprinkle_caption.R | 12 pixiedust-0.8.1/pixiedust/R/sprinkle_discrete.R | 103 ----- pixiedust-0.8.1/pixiedust/R/sprinkle_float.R | 12 pixiedust-0.8.1/pixiedust/R/sprinkle_fn.R | 16 pixiedust-0.8.1/pixiedust/R/sprinkle_font.R | 108 ----- pixiedust-0.8.1/pixiedust/R/sprinkle_gradient.R | 205 +--------- pixiedust-0.8.1/pixiedust/R/sprinkle_height.R | 40 - pixiedust-0.8.1/pixiedust/R/sprinkle_hhline.R | 12 pixiedust-0.8.1/pixiedust/R/sprinkle_justify.R | 15 pixiedust-0.8.1/pixiedust/R/sprinkle_label.R | 14 pixiedust-0.8.1/pixiedust/R/sprinkle_longtable.R | 37 - pixiedust-0.8.1/pixiedust/R/sprinkle_na_string.R | 16 pixiedust-0.8.1/pixiedust/R/sprinkle_new.R |only pixiedust-0.8.1/pixiedust/R/sprinkle_pad.R | 16 pixiedust-0.8.1/pixiedust/R/sprinkle_replace.R | 43 +- pixiedust-0.8.1/pixiedust/R/sprinkle_rotate_degree.R | 15 pixiedust-0.8.1/pixiedust/R/sprinkle_round.R | 27 - pixiedust-0.8.1/pixiedust/R/sprinkle_sanitize.R | 45 -- pixiedust-0.8.1/pixiedust/R/sprinkle_tabcolsep.R | 10 pixiedust-0.8.1/pixiedust/R/sprinkle_table.R | 4 pixiedust-0.8.1/pixiedust/R/sprinkle_width.R | 48 -- pixiedust-0.8.1/pixiedust/R/sysdata.rda |binary pixiedust-0.8.1/pixiedust/R/tidy_levels_labels.R | 6 pixiedust-0.8.1/pixiedust/README.md | 38 - pixiedust-0.8.1/pixiedust/inst/doc/advancedMagic.html | 4 pixiedust-0.8.1/pixiedust/inst/doc/pixiedust.html | 4 pixiedust-0.8.1/pixiedust/inst/doc/sprinkles.R | 2 pixiedust-0.8.1/pixiedust/inst/doc/sprinkles.Rmd | 4 pixiedust-0.8.1/pixiedust/inst/doc/sprinkles.html | 4 pixiedust-0.8.1/pixiedust/inst/sprinkle_reference.csv | 26 - pixiedust-0.8.1/pixiedust/man/get_dust_part.Rd | 9 pixiedust-0.8.1/pixiedust/man/pval_string.Rd | 29 + pixiedust-0.8.1/pixiedust/man/sprinkle_align.Rd | 2 pixiedust-0.8.1/pixiedust/man/sprinkle_bg_pattern.Rd | 4 pixiedust-0.8.1/pixiedust/man/sprinkle_discrete.Rd | 4 pixiedust-0.8.1/pixiedust/man/sprinkle_font.Rd | 4 pixiedust-0.8.1/pixiedust/man/sprinkle_gradient.Rd | 4 pixiedust-0.8.1/pixiedust/man/sprinkle_height.Rd | 9 pixiedust-0.8.1/pixiedust/man/sprinkle_sanitize.Rd | 4 pixiedust-0.8.1/pixiedust/man/sprinkle_width.Rd | 9 pixiedust-0.8.1/pixiedust/tests/testthat/test-get_dust_part.R |only pixiedust-0.8.1/pixiedust/tests/testthat/test-pvalString.R | 88 +++- pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_align.R | 21 + pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_bg.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_bg_pattern.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_bookdown.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_border.R | 15 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_border_collapse.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_caption.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_discrete.R | 22 + pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_float.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_fn.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_font.R | 21 - pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_gradient.R | 182 ++++++++ pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_height.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_hhline.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_justify.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_label.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_longtable.R | 12 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_na_string.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_pad.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_replace.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_rotate_degree.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_round.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_sanitize.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_tabcolsep.R | 11 pixiedust-0.8.1/pixiedust/tests/testthat/test-sprinkle_width.R | 14 pixiedust-0.8.1/pixiedust/vignettes/sprinkles.Rmd | 4 84 files changed, 1071 insertions(+), 922 deletions(-)