Title: Calculate and Analyze Blau Status for (Covert) Organizations
Description: An integrated set of tools to calculate and analyze Blau statuses quantifying social distance between individuals belonging to (covert) organizations. Relational (network) data can be incorporated for additional analyses. This project is supported by Defense Threat Reduction Agency (DTRA) Grant HDTRA-10-1-0043.
Author: Cheng Wang*, Michael Genkin*, George Berry, Liyuan Chen, Matthew Brashears *Both authors contributed equally to this work and their names are randomly ordered
Maintainer: Cheng Wang <cwang3@nd.edu>
Diff between Blaunet versions 2.0.5 dated 2017-09-14 and 2.0.6 dated 2017-09-22
Blaunet-2.0.5/Blaunet/man/blaunet-package.Rd |only Blaunet-2.0.6/Blaunet/DESCRIPTION | 8 Blaunet-2.0.6/Blaunet/MD5 | 58 Blaunet-2.0.6/Blaunet/R/calc.niches.R | 4 Blaunet-2.0.6/Blaunet/R/dyadic.R | 68 - Blaunet-2.0.6/Blaunet/R/niches.R | 36 Blaunet-2.0.6/Blaunet/R/nodal.global.R | 54 Blaunet-2.0.6/Blaunet/R/nodal.local.R | 70 - Blaunet-2.0.6/Blaunet/R/nodal.network.R | 56 Blaunet-2.0.6/Blaunet/R/zzz.R | 2 Blaunet-2.0.6/Blaunet/inst/scripts/analysis.R | 1017 ++++++++-------- Blaunet-2.0.6/Blaunet/inst/scripts/blaububbles.R | 9 Blaunet-2.0.6/Blaunet/inst/scripts/blaunetgui.R | 20 Blaunet-2.0.6/Blaunet/inst/scripts/command.pdf |binary Blaunet-2.0.6/Blaunet/inst/scripts/dynamics.R | 1394 +++++++++++----------- Blaunet-2.0.6/Blaunet/inst/scripts/graphic.pdf |binary Blaunet-2.0.6/Blaunet/inst/scripts/nicheplot.R | 1415 ++++++++++++----------- Blaunet-2.0.6/Blaunet/man/BSANet.Rd | 4 Blaunet-2.0.6/Blaunet/man/Blaunet-package.Rd |only Blaunet-2.0.6/Blaunet/man/active.Rd | 2 Blaunet-2.0.6/Blaunet/man/blau.Rd | 8 Blaunet-2.0.6/Blaunet/man/blaunetgui.Rd | 4 Blaunet-2.0.6/Blaunet/man/dyadic.Rd | 8 Blaunet-2.0.6/Blaunet/man/ecology.summary.Rd | 2 Blaunet-2.0.6/Blaunet/man/export.dyadic.Rd | 4 Blaunet-2.0.6/Blaunet/man/export.nodal.Rd | 7 Blaunet-2.0.6/Blaunet/man/niche.summary.Rd | 2 Blaunet-2.0.6/Blaunet/man/niches.Rd | 12 Blaunet-2.0.6/Blaunet/man/nodal.global.Rd | 9 Blaunet-2.0.6/Blaunet/man/nodal.local.Rd | 7 Blaunet-2.0.6/Blaunet/man/nodal.network.Rd | 6 31 files changed, 2232 insertions(+), 2054 deletions(-)
Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Markdown or LaTeX format,
possibly including R code for dynamic generation of exercise elements.
Exercise types include single-choice and multiple-choice questions, arithmetic problems,
string questions, and combinations thereof (cloze). Output formats include standalone
files (PDF, HTML, Docx, ODT, ...), Moodle XML, QTI 1.2 (for OLAT/OpenOLAT), QTI 2.1,
Blackboard, ARSnova, and TCExam. In addition to fully customizable PDF exams, a
standardized PDF format (NOPS) is provided that can be printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre],
Bettina Gruen [aut],
Friedrich Leisch [aut],
Nikolaus Umlauf [aut],
Niels Smits [ctb],
Mirko Birbaumer [ctb],
Dominik Ernst [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams versions 2.2-1 dated 2017-03-16 and 2.3-0 dated 2017-09-22
DESCRIPTION | 17 +++--- MD5 | 88 ++++++++++++++++---------------- NEWS | 49 ++++++++++++++++++ R/exams2pdf.R | 48 ++++++++++++----- R/exams2qti21.R | 2 R/formatters.R | 6 +- R/nops_eval.R | 2 R/nops_scan.R | 39 +++++++++----- R/pandoc.R | 108 +++++++++++++++++++++++----------------- R/tex2image.R | 89 ++++++++++++++++++-------------- R/transformers.R | 2 R/xexams.R | 6 +- build/vignette.rds |binary inst/doc/exams.pdf |binary inst/doc/exams2.pdf |binary inst/exercises/Rlogo.Rmd | 6 +- inst/exercises/Rlogo.Rnw | 6 +- inst/exercises/boxhist.Rmd | 2 inst/exercises/boxhist.Rnw | 2 inst/exercises/boxhist2.Rmd | 2 inst/exercises/boxhist2.Rnw | 2 inst/exercises/countrycodes.Rmd | 2 inst/exercises/countrycodes.Rnw | 2 inst/exercises/gaussmarkov.Rmd | 6 +- inst/exercises/gaussmarkov.Rnw | 6 +- inst/exercises/lm.Rmd | 12 ++++ inst/exercises/lm.Rnw | 13 ++++ inst/exercises/regression.Rmd | 12 ++-- inst/exercises/regression.Rnw | 12 ++-- inst/exercises/swisscapital.Rmd | 8 ++ inst/exercises/swisscapital.Rnw | 10 ++- inst/nops/nops_scan1.png |binary inst/nops/nops_scan2.png |binary inst/pandoc/plain.md |only inst/tex/exam.tex | 11 ++++ inst/tex/plain-highlight.tex |only inst/tex/plain8.tex | 2 inst/tex/solution.tex | 11 ++++ inst/xml/plain.html | 2 inst/xml/plain8.html | 2 inst/xml/plain9.html | 2 man/exams2pdf.Rd | 22 +++++++- man/fmt.Rd | 5 + man/nops_scan.Rd | 2 man/tex2image.Rd | 47 ++++++++--------- man/xweave.Rd | 14 ++--- 46 files changed, 442 insertions(+), 237 deletions(-)
Title: Java GUI for R
Description: Java GUI for R - cross-platform, universal and unified Graphical User Interface for R. For full functionality on Windows and Mac OS X JGR requires a start application which depends on your OS.
Author: Markus Helbig <info@markushelbig.de>, Simon Urbanek, Ian Fellows
Maintainer: Markus Helbig <info@markushelbig.de>
Diff between JGR versions 1.7-16 dated 2013-12-21 and 1.8-3 dated 2017-09-22
DESCRIPTION | 15 + MD5 | 124 ++++++++++++++- NAMESPACE | 4 NEWS | 45 ++++- R/JGR.R | 344 +++++++++++++++++++------------------------- inst/java/JGR.jar |binary java |only man/jgr.addMenuSeperator.Rd | 62 +++---- man/supplements.Rd | 3 9 files changed, 345 insertions(+), 252 deletions(-)
Title: Estimating Disease Prevalence from Registry Data
Description: Estimates disease prevalence for a given index date, using existing
registry data extended with Monte Carlo simulations.
Author: Simon Crouch [aut],
Stephanie Lax [aut],
Stuart Lacy [cre, aut]
Maintainer: Stuart Lacy <stuart.lacy@york.ac.uk>
Diff between rprev versions 0.2.3 dated 2017-02-13 and 0.2.4 dated 2017-09-22
DESCRIPTION | 8 ++--- MD5 | 12 +++---- NAMESPACE | 2 - NEWS.md | 3 + R/survfit.prev.R | 8 +---- build/vignette.rds |binary inst/doc/user_guide.html | 73 ++++++++++++++++++++++++++--------------------- 7 files changed, 58 insertions(+), 48 deletions(-)
Title: Deprecated 'classic' Rcpp API
Description: The RcppClassic package provides a deprecated C++ library which
facilitates the integration of R and C++. New projects should use the new Rcpp
API in the Rcpp package.
Author: Dirk Eddelbuettel and Romain Francois, with contributions by David Reiss,
and based on code written during 2005 and 2006 by Dominick Samperi
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppClassic versions 0.9.7 dated 2017-09-17 and 0.9.8 dated 2017-09-22
RcppClassic-0.9.7/RcppClassic/vignettes/pinp.cls |only RcppClassic-0.9.8/RcppClassic/ChangeLog | 11 + RcppClassic-0.9.8/RcppClassic/DESCRIPTION | 8 - RcppClassic-0.9.8/RcppClassic/MD5 | 17 +- RcppClassic-0.9.8/RcppClassic/cleanup | 6 - RcppClassic-0.9.8/RcppClassic/inst/doc/RcppClassic-intro.Rmd | 58 ++++++---- RcppClassic-0.9.8/RcppClassic/inst/doc/RcppClassic-intro.pdf |binary RcppClassic-0.9.8/RcppClassic/inst/doc/RcppClassic-unitTests.pdf |binary RcppClassic-0.9.8/RcppClassic/src/Makevars | 4 RcppClassic-0.9.8/RcppClassic/vignettes/RcppClassic-intro.Rmd | 58 ++++++---- 10 files changed, 101 insertions(+), 61 deletions(-)
Title: Port of Dparser Package
Description: A Scannerless GLR parser/parser generator. Note that GLR standing for "generalized LR", where L stands for "left-to-right" and
R stands for "rightmost (derivation)". For more information see <https://en.wikipedia.org/wiki/GLR_parser>. This parser is based on the Tomita
(1987) algorithm. (Paper can be found at <http://acl-arc.comp.nus.edu.sg/archives/acl-arc-090501d3/data/pdf/anthology-PDF/J/J87/J87-1004.pdf>).
The original dparser package documentation can be found at <http://dparser.sourceforge.net/>. This allows you to add mini-languages to R (like
RxODE's ODE mini-language Wang, Hallow, and James 2015 <DOI:10.1002/psp4.12052>) or to parse other languages like NONMEM to automatically translate
them to R code. To use this in your code, add a LinkingTo 'dparser' in your DESCRIPTION file and instead of using '#include <dparse.h>' use
'#include <dparser.h>'. This also provides a R-based port of the make_dparser <http://dparser.sourceforge.net/d/make_dparser.cat> command called
'mkdparser'. Additionally you can parse an arbitrary grammar within R using the 'dparse' function.
Author: Matthew Fidler [aut, cre],
John Plevyak [aut]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between dparser versions 0.1.3 dated 2017-04-29 and 0.1.4 dated 2017-09-22
DESCRIPTION | 6 MD5 | 510 ++++---- R/dparser.R | 4 man/dparse.Rd | 4 src/dparser.h | 90 - tests/testthat/ansic.test.g.1 | 6 tests/testthat/ansic.test.g.1.check | 6 tests/testthat/ansic.test.g.2.check | 4 tests/testthat/bnf.g | 98 - tests/testthat/g1.test.g | 12 tests/testthat/g1.test.g.1 | 2 tests/testthat/g1.test.g.1.check | 12 tests/testthat/g10.test.g | 4 tests/testthat/g10.test.g.1 | 2 tests/testthat/g10.test.g.1.check | 4 tests/testthat/g11.test.g | 8 tests/testthat/g11.test.g.1 | 2 tests/testthat/g11.test.g.1.check | 4 tests/testthat/g11.test.g.2 | 2 tests/testthat/g11.test.g.2.check | 4 tests/testthat/g11.test.g.3 | 2 tests/testthat/g11.test.g.3.check | 4 tests/testthat/g12.test.g | 2 tests/testthat/g12.test.g.1 | 2 tests/testthat/g12.test.g.1.check | 4 tests/testthat/g13.test.g | 2 tests/testthat/g13.test.g.1 | 2 tests/testthat/g13.test.g.1.check | 4 tests/testthat/g14.test.g | 2 tests/testthat/g14.test.g.1 | 2 tests/testthat/g14.test.g.1.check | 4 tests/testthat/g15.test.g | 6 tests/testthat/g15.test.g.1 | 2 tests/testthat/g15.test.g.1.check | 4 tests/testthat/g16.test.g | 8 tests/testthat/g16.test.g.1 | 2 tests/testthat/g16.test.g.1.check | 10 tests/testthat/g17.test.g | 12 tests/testthat/g17.test.g.1 | 2 tests/testthat/g17.test.g.1.check | 14 tests/testthat/g18.test.g | 10 tests/testthat/g18.test.g.1 | 2 tests/testthat/g18.test.g.1.check | 14 tests/testthat/g19.test.g | 14 tests/testthat/g19.test.g.1 | 2 tests/testthat/g19.test.g.1.check | 14 tests/testthat/g2.test.g | 4 tests/testthat/g2.test.g.1 | 2 tests/testthat/g2.test.g.1.check | 4 tests/testthat/g20.test.g | 12 tests/testthat/g20.test.g.1 | 2 tests/testthat/g20.test.g.1.check | 14 tests/testthat/g21.test.g | 8 tests/testthat/g21.test.g.1 | 2 tests/testthat/g21.test.g.1.check | 4 tests/testthat/g22.test.g | 8 tests/testthat/g22.test.g.1 | 2 tests/testthat/g22.test.g.1.check | 4 tests/testthat/g23.test.g | 4 tests/testthat/g23.test.g.1 | 2 tests/testthat/g23.test.g.1.check | 4 tests/testthat/g24.test.g | 38 tests/testthat/g24.test.g.1 | 10 tests/testthat/g24.test.g.1.check | 4 tests/testthat/g25.test.g | 22 tests/testthat/g25.test.g.1 | 4 tests/testthat/g25.test.g.1.check | 8 tests/testthat/g26.test.g | 12 tests/testthat/g26.test.g.1 | 2 tests/testthat/g26.test.g.1.check | 8 tests/testthat/g27.test.g | 24 tests/testthat/g27.test.g.1 | 6 tests/testthat/g27.test.g.1.check | 10 tests/testthat/g28.test.g | 104 - tests/testthat/g28.test.g.1 | 14 tests/testthat/g28.test.g.1.check | 14 tests/testthat/g28.test.g.2 | 38 tests/testthat/g28.test.g.2.check | 30 tests/testthat/g29.test.g | 108 - tests/testthat/g29.test.g.1 | 40 tests/testthat/g29.test.g.1.check | 36 tests/testthat/g3.test.g | 2 tests/testthat/g3.test.g.1 | 2 tests/testthat/g3.test.g.1.check | 4 tests/testthat/g30.test.g | 14 tests/testthat/g30.test.g.1 | 2 tests/testthat/g30.test.g.1.check | 4 tests/testthat/g31.test.g | 62 - tests/testthat/g31.test.g.1 | 6 tests/testthat/g31.test.g.1.check | 38 tests/testthat/g32.test.g | 94 - tests/testthat/g32.test.g.1 | 6 tests/testthat/g32.test.g.1.check | 12 tests/testthat/g33.test.g | 114 - tests/testthat/g33.test.g.1 | 6 tests/testthat/g33.test.g.1.check | 78 - tests/testthat/g34.test.g | 36 tests/testthat/g34.test.g.1 | 6 tests/testthat/g34.test.g.1.check | 10 tests/testthat/g35.test.g | 18 tests/testthat/g35.test.g.1 | 2 tests/testthat/g35.test.g.1.check | 6 tests/testthat/g36.test.g | 40 tests/testthat/g36.test.g.1 | 8 tests/testthat/g36.test.g.1.check | 12 tests/testthat/g37.test.g | 2 tests/testthat/g37.test.g.1 | 2 tests/testthat/g37.test.g.1.check | 4 tests/testthat/g38.test.g | 6 tests/testthat/g38.test.g.1 | 2 tests/testthat/g38.test.g.1.check | 4 tests/testthat/g38.test.g.1.flags | 2 tests/testthat/g38.test.g.flags | 2 tests/testthat/g39.test.g | 2 tests/testthat/g39.test.g.1 | 2 tests/testthat/g39.test.g.1.check | 4 tests/testthat/g4.test.g | 20 tests/testthat/g4.test.g.1 | 2 tests/testthat/g4.test.g.1.check | 4 tests/testthat/g40.test.g | 102 - tests/testthat/g40.test.g.1 | 2 tests/testthat/g40.test.g.1.check | 4 tests/testthat/g41.test.g | 6 tests/testthat/g41.test.g.1 | 2 tests/testthat/g41.test.g.1.check | 4 tests/testthat/g42.include.g | 2 tests/testthat/g42.test.g | 12 tests/testthat/g42.test.g.1 | 2 tests/testthat/g42.test.g.1.check | 4 tests/testthat/g43.test.g | 10 tests/testthat/g43.test.g.1 | 2 tests/testthat/g43.test.g.1.check | 4 tests/testthat/g43.test.g.2 | 2 tests/testthat/g43.test.g.2.check | 4 tests/testthat/g43.test.g.2.flags | 2 tests/testthat/g43.test.g.3 | 2 tests/testthat/g43.test.g.3.check | 4 tests/testthat/g43.test.g.3.flags | 2 tests/testthat/g44.test.g | 6 tests/testthat/g44.test.g.1 | 2 tests/testthat/g44.test.g.1.check | 4 tests/testthat/g45.test.g | 54 tests/testthat/g45.test.g.1 | 2 tests/testthat/g45.test.g.1.check | 8 tests/testthat/g46.test.g | 4 tests/testthat/g46.test.g.1 | 2 tests/testthat/g46.test.g.1.check | 4 tests/testthat/g47.test.g | 40 tests/testthat/g47.test.g.1 | 2 tests/testthat/g47.test.g.1.check | 36 tests/testthat/g48.test.g | 34 tests/testthat/g48.test.g.1.check | 6 tests/testthat/g49.test.g | 22 tests/testthat/g49.test.g.1 | 10 tests/testthat/g49.test.g.1.check | 6 tests/testthat/g5.test.g | 2 tests/testthat/g5.test.g.1 | 2 tests/testthat/g5.test.g.1.check | 4 tests/testthat/g50.test.g | 296 ++--- tests/testthat/g50.test.g.1 | 380 +++--- tests/testthat/g50.test.g.1.check | 82 - tests/testthat/g51.test.g | 10 tests/testthat/g51.test.g.1 | 2 tests/testthat/g51.test.g.1.check | 4 tests/testthat/g6.test.g | 6 tests/testthat/g6.test.g.1 | 2 tests/testthat/g6.test.g.1.check | 4 tests/testthat/g7.test.g | 64 - tests/testthat/g7.test.g.1 | 2 tests/testthat/g7.test.g.1.check | 4 tests/testthat/g7.test.g.2 | 2 tests/testthat/g7.test.g.2.check | 4 tests/testthat/g8.test.g | 4 tests/testthat/g8.test.g.1 | 2 tests/testthat/g8.test.g.1.check | 4 tests/testthat/g9.test.g | 2 tests/testthat/g9.test.g.1 | 2 tests/testthat/g9.test.g.1.check | 4 tests/testthat/python.test.g | 440 +++---- tests/testthat/python.test.g.1 | 124 +- tests/testthat/python.test.g.1.check | 100 - tests/testthat/sample.test.g | 334 ++--- tests/testthat/sample.test.g.0 | 2 tests/testthat/sample.test.g.0.check | 8 tests/testthat/sample.test.g.1 | 2 tests/testthat/sample.test.g.1.check | 4 tests/testthat/sample.test.g.10 | 2 tests/testthat/sample.test.g.10.check | 4 tests/testthat/sample.test.g.11 | 2 tests/testthat/sample.test.g.11.check | 4 tests/testthat/sample.test.g.12 | 2 tests/testthat/sample.test.g.12.check | 4 tests/testthat/sample.test.g.13 | 2 tests/testthat/sample.test.g.13.check | 12 tests/testthat/sample.test.g.14 | 2 tests/testthat/sample.test.g.14.check | 4 tests/testthat/sample.test.g.15 | 2 tests/testthat/sample.test.g.15.check | 4 tests/testthat/sample.test.g.16 | 2 tests/testthat/sample.test.g.16.check | 4 tests/testthat/sample.test.g.17 | 2 tests/testthat/sample.test.g.17.check | 4 tests/testthat/sample.test.g.18 | 2 tests/testthat/sample.test.g.18.check | 8 tests/testthat/sample.test.g.19 | 2 tests/testthat/sample.test.g.19.check | 14 tests/testthat/sample.test.g.2 | 2 tests/testthat/sample.test.g.2.check | 4 tests/testthat/sample.test.g.20 | 2 tests/testthat/sample.test.g.20.check | 14 tests/testthat/sample.test.g.21 | 2 tests/testthat/sample.test.g.21.check | 6 tests/testthat/sample.test.g.22 | 222 +-- tests/testthat/sample.test.g.22.check | 2008 +++++++++++++++++----------------- tests/testthat/sample.test.g.23 | 2 tests/testthat/sample.test.g.23.check | 6 tests/testthat/sample.test.g.24 | 2 tests/testthat/sample.test.g.24.check | 18 tests/testthat/sample.test.g.25 | 2 tests/testthat/sample.test.g.25.check | 10 tests/testthat/sample.test.g.26 | 2 tests/testthat/sample.test.g.26.check | 18 tests/testthat/sample.test.g.27 | 2 tests/testthat/sample.test.g.27.check | 12 tests/testthat/sample.test.g.28 | 2 tests/testthat/sample.test.g.28.check | 12 tests/testthat/sample.test.g.29 | 2 tests/testthat/sample.test.g.29.check | 10 tests/testthat/sample.test.g.3 | 2 tests/testthat/sample.test.g.3.check | 4 tests/testthat/sample.test.g.30 | 2 tests/testthat/sample.test.g.30.check | 8 tests/testthat/sample.test.g.31 | 2 tests/testthat/sample.test.g.31.check | 4 tests/testthat/sample.test.g.32 | 2 tests/testthat/sample.test.g.32.check | 4 tests/testthat/sample.test.g.33 | 2 tests/testthat/sample.test.g.33.check | 8 tests/testthat/sample.test.g.4 | 2 tests/testthat/sample.test.g.4.check | 4 tests/testthat/sample.test.g.5 | 2 tests/testthat/sample.test.g.5.check | 4 tests/testthat/sample.test.g.6 | 2 tests/testthat/sample.test.g.6.check | 4 tests/testthat/sample.test.g.7 | 2 tests/testthat/sample.test.g.7.check | 4 tests/testthat/sample.test.g.8 | 2 tests/testthat/sample.test.g.8.check | 4 tests/testthat/sample.test.g.9 | 2 tests/testthat/sample.test.g.9.check | 4 tests/testthat/test-arbitrary.R | 97 - tests/testthat/test-envir.R | 11 tests/testthat/utf8.test.g | 16 tests/testthat/utf8.test.g.1 | 2 tests/testthat/utf8.test.g.1.check | 4 tests/testthat/utf8.test.g.out | 10 256 files changed, 3581 insertions(+), 3569 deletions(-)
Title: Species Trait Data from Around the Web
Description: Species trait data from many different sources, including
sequence data from 'NCBI', plant trait data from 'BETYdb', plant data
from the USDA plants database, data from 'EOL' 'Traitbank',
Coral traits data (<https://coraltraits.org>), 'Birdlife' International,
and more.
Author: Scott Chamberlain [aut, cre],
Zachary Foster [aut],
Ignasi Bartomeus [aut],
David LeBauer [aut],
David Harris [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between traits versions 0.2.0 dated 2016-03-18 and 0.3.0 dated 2017-09-22
traits-0.2.0/traits/R/deprecated.R |only traits-0.2.0/traits/man/eol_invasive_.Rd |only traits-0.2.0/traits/man/fe_native.Rd |only traits-0.2.0/traits/man/g_invasive.Rd |only traits-0.2.0/traits/man/is_native.Rd |only traits-0.2.0/traits/man/traits-deprecated.Rd |only traits-0.3.0/traits/DESCRIPTION | 26 - traits-0.3.0/traits/LICENSE | 2 traits-0.3.0/traits/MD5 | 108 ++-- traits-0.3.0/traits/NAMESPACE | 14 traits-0.3.0/traits/NEWS.md |only traits-0.3.0/traits/R/betydb.R | 256 +++++++--- traits-0.3.0/traits/R/birdlife.R | 70 +- traits-0.3.0/traits/R/caching.R |only traits-0.3.0/traits/R/coral.R | 6 traits-0.3.0/traits/R/defunct.R |only traits-0.3.0/traits/R/eol_invasive.R | 151 ------ traits-0.3.0/traits/R/fe_native.R | 129 ----- traits-0.3.0/traits/R/g_invasive.R | 73 -- traits-0.3.0/traits/R/is_native.R | 101 ---- traits-0.3.0/traits/R/leda.R | 4 traits-0.3.0/traits/R/ncbi_byid.R | 39 - traits-0.3.0/traits/R/ncbi_byname.R | 33 - traits-0.3.0/traits/R/ncbi_searcher.R | 8 traits-0.3.0/traits/R/on_load.R |only traits-0.3.0/traits/R/tr_ernest.R |only traits-0.3.0/traits/R/tr_usda.R |only traits-0.3.0/traits/R/tr_zanne.R |only traits-0.3.0/traits/R/traitbank.R | 30 - traits-0.3.0/traits/R/traits-package.r | 27 - traits-0.3.0/traits/R/zzz.R | 10 traits-0.3.0/traits/README.md | 204 +++----- traits-0.3.0/traits/build/vignette.rds |binary traits-0.3.0/traits/inst/doc/betydb.Rmd | 56 -- traits-0.3.0/traits/inst/doc/betydb.html | 58 -- traits-0.3.0/traits/inst/doc/traits_intro.Rmd | 491 +++++--------------- traits-0.3.0/traits/inst/doc/traits_intro.html | 475 +++++-------------- traits-0.3.0/traits/inst/vign/betydb.md | 56 -- traits-0.3.0/traits/inst/vign/traits_intro.Rmd | 75 --- traits-0.3.0/traits/inst/vign/traits_intro.md | 491 +++++--------------- traits-0.3.0/traits/man/betydb.Rd | 71 ++ traits-0.3.0/traits/man/betydb_query.Rd |only traits-0.3.0/traits/man/birdlife_habitat.Rd | 17 traits-0.3.0/traits/man/birdlife_threats.Rd | 15 traits-0.3.0/traits/man/coral.Rd | 11 traits-0.3.0/traits/man/eol_invasive_-defunct.Rd |only traits-0.3.0/traits/man/fe_native-defunct.Rd |only traits-0.3.0/traits/man/g_invasive-defunct.Rd |only traits-0.3.0/traits/man/is_native-defunct.Rd |only traits-0.3.0/traits/man/leda.Rd | 1 traits-0.3.0/traits/man/ncbi_byid.Rd | 7 traits-0.3.0/traits/man/ncbi_byname.Rd | 13 traits-0.3.0/traits/man/ncbi_searcher.Rd | 9 traits-0.3.0/traits/man/plantatt.Rd | 1 traits-0.3.0/traits/man/taxa_search.Rd | 1 traits-0.3.0/traits/man/tr_ernest.Rd |only traits-0.3.0/traits/man/tr_usda.Rd |only traits-0.3.0/traits/man/tr_zanne.Rd |only traits-0.3.0/traits/man/traitbank.Rd | 7 traits-0.3.0/traits/man/traits-defunct.Rd |only traits-0.3.0/traits/man/traits-package.Rd | 22 traits-0.3.0/traits/man/traits_cache.Rd |only traits-0.3.0/traits/tests/testthat/helper-traits.R | 24 traits-0.3.0/traits/tests/testthat/test-betydb.R | 118 ++++ traits-0.3.0/traits/tests/testthat/test-traitbank.R |only traits-0.3.0/traits/vignettes/betydb.Rmd | 56 -- traits-0.3.0/traits/vignettes/traits_intro.Rmd | 491 +++++--------------- 67 files changed, 1365 insertions(+), 2492 deletions(-)
Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts ('TrueType',
'OpenType', Type 1, web fonts, etc.) in R graphs, and supporting most output
formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted
into polygons or raster images, hence after the plot has been created, it no
longer relies on the font files. No external software such as 'Ghostscript' is
needed to use this package.
Author: Yixuan Qiu and authors/contributors of the
included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between showtext versions 0.4-6 dated 2017-01-05 and 0.5 dated 2017-09-22
showtext-0.4-6/showtext/R/font.R |only showtext-0.4-6/showtext/man/showtext.auto.Rd |only showtext-0.4-6/showtext/man/showtext.begin.Rd |only showtext-0.4-6/showtext/man/showtext.end.Rd |only showtext-0.4-6/showtext/man/showtext.opts.Rd |only showtext-0.5/showtext/DESCRIPTION | 14 +- showtext-0.5/showtext/MD5 | 65 ++++----- showtext-0.5/showtext/NAMESPACE | 3 showtext-0.5/showtext/R/deprecate.R |only showtext-0.5/showtext/R/showtext.R | 126 ++++++++++++------ showtext-0.5/showtext/R/zzz.R | 14 +- showtext-0.5/showtext/README.md | 46 +++--- showtext-0.5/showtext/build/vignette.rds |binary showtext-0.5/showtext/inst/AUTHORS | 2 showtext-0.5/showtext/inst/NEWS.Rd | 11 + showtext-0.5/showtext/inst/doc/introduction.R | 14 +- showtext-0.5/showtext/inst/doc/introduction.Rmd | 44 +++--- showtext-0.5/showtext/inst/doc/introduction.html | 42 +++--- showtext-0.5/showtext/man/showtext_auto.Rd |only showtext-0.5/showtext/man/showtext_begin.Rd |only showtext-0.5/showtext/man/showtext_end.Rd |only showtext-0.5/showtext/man/showtext_opts.Rd |only showtext-0.5/showtext/src/Makevars.win | 2 showtext-0.5/showtext/src/array.c | 61 +++++++-- showtext-0.5/showtext/src/array.h | 26 ++- showtext-0.5/showtext/src/devfuns.c | 115 ++++++++--------- showtext-0.5/showtext/src/devfuns.h | 8 - showtext-0.5/showtext/src/fonts.c | 37 ++--- showtext-0.5/showtext/src/fonts.h | 24 ++- showtext-0.5/showtext/src/outline.c | 154 +++++++++++------------ showtext-0.5/showtext/src/outline.h | 42 +++--- showtext-0.5/showtext/src/raster.c | 41 +++--- showtext-0.5/showtext/src/raster.h | 14 +- showtext-0.5/showtext/src/register_routines.c |only showtext-0.5/showtext/src/showtext-win.def | 14 +- showtext-0.5/showtext/src/showtext.c | 75 +++++------ showtext-0.5/showtext/src/util.c | 69 ++++------ showtext-0.5/showtext/src/util.h | 20 +- showtext-0.5/showtext/vignettes/introduction.Rmd | 44 +++--- 39 files changed, 633 insertions(+), 494 deletions(-)
Title: Range Ancestral State Estimation for Phylogeography and
Comparative Analyses
Description: Implements the Range Ancestral State Estimation for phylogeography described in Quintero, I., Keil, P., Jetz, W., & Crawford, F. W. (2015) <DOI:10.1093/sysbio/syv057>. It also includes Bayesian inference of ancestral states under a Brownian Motion model of character evolution and Maximum Likelihood estimation of rase for n-dimensional data. Visualizing functions in 3D are implemented using the rgl package.
Author: Ignacio Quintero [aut, cre],
Forrest W. Crawford [aut],
Petr Keil [aut]
Maintainer: Ignacio Quintero <ignacio.quintero@yale.edu>
Diff between rase versions 0.3-2 dated 2017-03-22 and 0.3-3 dated 2017-09-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NAMESPACE | 1 + R/rase_source.r | 38 ++++++++++++++++++++++++++------------ README.md | 6 +++--- 5 files changed, 37 insertions(+), 22 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and ngrams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [aut, cre, cph],
Kohei Watanabe [ctb],
Paul Nulty [ctb],
Adam Obeng [ctb],
Haiyan Wang [ctb],
Benjamin Lauderdale [ctb],
Will Lowe [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.99 dated 2017-08-15 and 0.99.9 dated 2017-09-22
quanteda-0.99.9/quanteda/DESCRIPTION | 16 quanteda-0.99.9/quanteda/MD5 | 187 ++-- quanteda-0.99.9/quanteda/NAMESPACE | 13 quanteda-0.99.9/quanteda/NEWS.md | 31 quanteda-0.99.9/quanteda/R/RcppExports.R | 12 quanteda-0.99.9/quanteda/R/character-methods.R | 15 quanteda-0.99.9/quanteda/R/corpus-methods-base.R | 90 +- quanteda-0.99.9/quanteda/R/corpus_reshape.R | 59 + quanteda-0.99.9/quanteda/R/corpus_segment.R | 418 ++++----- quanteda-0.99.9/quanteda/R/corpus_trim.R | 2 quanteda-0.99.9/quanteda/R/data-documentation.R | 50 + quanteda-0.99.9/quanteda/R/dfm-classes.R | 141 +-- quanteda-0.99.9/quanteda/R/dfm-methods.R | 10 quanteda-0.99.9/quanteda/R/dfm-print.R | 70 + quanteda-0.99.9/quanteda/R/dfm.R | 100 +- quanteda-0.99.9/quanteda/R/dfm_lookup.R | 33 quanteda-0.99.9/quanteda/R/dfm_select.R | 12 quanteda-0.99.9/quanteda/R/dictionaries.R | 404 ++++++--- quanteda-0.99.9/quanteda/R/docvars.R | 5 quanteda-0.99.9/quanteda/R/fcm-methods.R | 11 quanteda-0.99.9/quanteda/R/kwic.R | 4 quanteda-0.99.9/quanteda/R/quanteda-documentation.R | 2 quanteda-0.99.9/quanteda/R/quanteda_options.R | 151 +-- quanteda-0.99.9/quanteda/R/regex2fixed.R | 419 ++++++---- quanteda-0.99.9/quanteda/R/textmodel_ca.R | 2 quanteda-0.99.9/quanteda/R/textstat_collocations.R | 14 quanteda-0.99.9/quanteda/R/textstat_frequency.R | 35 quanteda-0.99.9/quanteda/R/tokens.R | 31 quanteda-0.99.9/quanteda/R/tokens_compound.R | 2 quanteda-0.99.9/quanteda/R/tokens_lookup.R | 11 quanteda-0.99.9/quanteda/R/tokens_segment.R |only quanteda-0.99.9/quanteda/R/tokens_select.R | 2 quanteda-0.99.9/quanteda/R/utils.R | 121 ++ quanteda-0.99.9/quanteda/README.md | 10 quanteda-0.99.9/quanteda/data/data_dictionary_LSD2015.rda |only quanteda-0.99.9/quanteda/inst/doc/quickstart.html | 215 +---- quanteda-0.99.9/quanteda/man/attributes-set.Rd | 7 quanteda-0.99.9/quanteda/man/corpus-class.Rd | 3 quanteda-0.99.9/quanteda/man/corpus_reshape.Rd | 31 quanteda-0.99.9/quanteda/man/corpus_segment.Rd | 214 ++--- quanteda-0.99.9/quanteda/man/corpus_trim.Rd | 1 quanteda-0.99.9/quanteda/man/create.Rd | 9 quanteda-0.99.9/quanteda/man/data_dictionary_LSD2015.Rd |only quanteda-0.99.9/quanteda/man/dfm.Rd | 2 quanteda-0.99.9/quanteda/man/dfm_lookup.Rd | 2 quanteda-0.99.9/quanteda/man/dfm_select.Rd | 2 quanteda-0.99.9/quanteda/man/dictionary-class.Rd | 5 quanteda-0.99.9/quanteda/man/dictionary.Rd | 74 + quanteda-0.99.9/quanteda/man/escape_regex.Rd |only quanteda-0.99.9/quanteda/man/head.corpus.Rd |only quanteda-0.99.9/quanteda/man/head.dfm.Rd | 13 quanteda-0.99.9/quanteda/man/is_regex.Rd |only quanteda-0.99.9/quanteda/man/kwic.Rd | 2 quanteda-0.99.9/quanteda/man/list2dictionary.Rd |only quanteda-0.99.9/quanteda/man/merge_dictionary_values.Rd |only quanteda-0.99.9/quanteda/man/nest_dicitonary.Rd |only quanteda-0.99.9/quanteda/man/pattern2id.Rd |only quanteda-0.99.9/quanteda/man/quanteda_options.Rd | 6 quanteda-0.99.9/quanteda/man/read_dict_liwc.Rd |only quanteda-0.99.9/quanteda/man/reexports.Rd |only quanteda-0.99.9/quanteda/man/regex2id.Rd |only quanteda-0.99.9/quanteda/man/remove_empty_keys.Rd |only quanteda-0.99.9/quanteda/man/replace_dictionary_values.Rd |only quanteda-0.99.9/quanteda/man/selectFeatures.Rd | 2 quanteda-0.99.9/quanteda/man/selectFeaturesOLD.Rd | 2 quanteda-0.99.9/quanteda/man/slots-set.Rd |only quanteda-0.99.9/quanteda/man/summary.corpus.Rd | 11 quanteda-0.99.9/quanteda/man/textstat_collocations.Rd | 2 quanteda-0.99.9/quanteda/man/textstat_frequency.Rd | 35 quanteda-0.99.9/quanteda/man/tokens_compound.Rd | 2 quanteda-0.99.9/quanteda/man/tokens_lookup.Rd | 2 quanteda-0.99.9/quanteda/man/tokens_segment.Rd |only quanteda-0.99.9/quanteda/man/tokens_select.Rd | 2 quanteda-0.99.9/quanteda/man/valuetype.Rd | 2 quanteda-0.99.9/quanteda/src/RcppExports.cpp | 46 - quanteda-0.99.9/quanteda/src/ca_mt.cpp |only quanteda-0.99.9/quanteda/src/recompile.h | 12 quanteda-0.99.9/quanteda/src/sequences_mt_.cpp | 261 ++---- quanteda-0.99.9/quanteda/src/tokens_lookup_mt.cpp | 93 +- quanteda-0.99.9/quanteda/src/tokens_segment_mt.cpp |only quanteda-0.99.9/quanteda/tests/data/dictionaries/liwc_hierarchical.dic |only quanteda-0.99.9/quanteda/tests/data_creation |only quanteda-0.99.9/quanteda/tests/testthat.R | 4 quanteda-0.99.9/quanteda/tests/testthat/test-convert.R | 9 quanteda-0.99.9/quanteda/tests/testthat/test-corpus-compress.R | 5 quanteda-0.99.9/quanteda/tests/testthat/test-corpus.R | 62 - quanteda-0.99.9/quanteda/tests/testthat/test-corpus_reshape.R | 2 quanteda-0.99.9/quanteda/tests/testthat/test-corpus_segment.R | 321 +++---- quanteda-0.99.9/quanteda/tests/testthat/test-dfm.R | 172 +++- quanteda-0.99.9/quanteda/tests/testthat/test-dfm_compress.R | 20 quanteda-0.99.9/quanteda/tests/testthat/test-dfm_lookup.R | 62 + quanteda-0.99.9/quanteda/tests/testthat/test-dfm_weight.R | 24 quanteda-0.99.9/quanteda/tests/testthat/test-dictionaries.R | 111 ++ quanteda-0.99.9/quanteda/tests/testthat/test-docvars.R | 2 quanteda-0.99.9/quanteda/tests/testthat/test-fcm.R | 29 quanteda-0.99.9/quanteda/tests/testthat/test-kwic.R | 8 quanteda-0.99.9/quanteda/tests/testthat/test-quanteda_options.R | 30 quanteda-0.99.9/quanteda/tests/testthat/test-regex2fixed.R | 71 + quanteda-0.99.9/quanteda/tests/testthat/test-textstat_collocations.R | 77 + quanteda-0.99.9/quanteda/tests/testthat/test-textstat_simil.R | 35 quanteda-0.99.9/quanteda/tests/testthat/test-tokens.R | 25 quanteda-0.99.9/quanteda/tests/testthat/test-tokens_lookup.R | 54 + quanteda-0.99.9/quanteda/tests/testthat/test-tokens_segment.R |only quanteda-0.99.9/quanteda/tests/testthat/test-utils.R | 7 quanteda-0.99/quanteda/src/ca.cpp |only quanteda-0.99/quanteda/src/tokens_match_mt.cpp |only quanteda-0.99/quanteda/tests/testthat/Rplots.pdf |only 107 files changed, 2827 insertions(+), 1844 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete gamma, discrete Laplace,
discrete normal, discrete uniform, discrete Weibull, Frechet,
gamma-Poisson, generalized extreme value, Gompertz,
generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t,
Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy,
Laplace, logarithmic, Lomax, multivariate hypergeometric,
multinomial, negative hypergeometric, non-standard t,
non-standard beta, normal mixture, Poisson mixture, Pareto,
power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam,
slash, triangular, truncated binomial, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zero-inflated negative binomial, zero-inflated Poisson.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+extraDistr@gmail.com>
Diff between extraDistr versions 1.8.6 dated 2017-06-28 and 1.8.7 dated 2017-09-22
extraDistr-1.8.6/extraDistr/R/non-standard-t-distribution.R |only extraDistr-1.8.6/extraDistr/R/onUnload.R |only extraDistr-1.8.6/extraDistr/man/NonStandardT.Rd |only extraDistr-1.8.6/extraDistr/src/non-standard-t-distribution.cpp |only extraDistr-1.8.7/extraDistr/DESCRIPTION | 8 extraDistr-1.8.7/extraDistr/MD5 | 59 extraDistr-1.8.7/extraDistr/NAMESPACE | 4 extraDistr-1.8.7/extraDistr/NEWS.md | 11 extraDistr-1.8.7/extraDistr/R/RcppExports.R | 392 ++-- extraDistr-1.8.7/extraDistr/R/bivariate-poisson-distribution.R | 2 extraDistr-1.8.7/extraDistr/R/discrete-gamma-distribution.R | 2 extraDistr-1.8.7/extraDistr/R/extraDistr-deprecated.R |only extraDistr-1.8.7/extraDistr/R/location-scale-t-distribution.R |only extraDistr-1.8.7/extraDistr/R/negative-hypergeometric-distribution.R | 2 extraDistr-1.8.7/extraDistr/R/zzz.R |only extraDistr-1.8.7/extraDistr/man/BivPoiss.Rd | 2 extraDistr-1.8.7/extraDistr/man/DiscreteGamma.Rd | 2 extraDistr-1.8.7/extraDistr/man/LocationScaleT.Rd |only extraDistr-1.8.7/extraDistr/man/NegHyper.Rd | 2 extraDistr-1.8.7/extraDistr/man/extraDistr-deprecated.Rd |only extraDistr-1.8.7/extraDistr/src/RcppExports.cpp | 850 +++++----- extraDistr-1.8.7/extraDistr/src/dirichlet-multinomial-distribution.cpp | 12 extraDistr-1.8.7/extraDistr/src/inverse-gamma-distribution.cpp | 13 extraDistr-1.8.7/extraDistr/src/location-scale-t-distribution.cpp |only extraDistr-1.8.7/extraDistr/src/multinomial-distribution.cpp | 12 extraDistr-1.8.7/extraDistr/tests/testthat/test-NAs.R | 45 extraDistr-1.8.7/extraDistr/tests/testthat/test-discrete.R | 3 extraDistr-1.8.7/extraDistr/tests/testthat/test-inappropriate-parameters.R | 16 extraDistr-1.8.7/extraDistr/tests/testthat/test-infinity.R | 8 extraDistr-1.8.7/extraDistr/tests/testthat/test-misc.R |only extraDistr-1.8.7/extraDistr/tests/testthat/test-multivariate-distributions.R | 9 extraDistr-1.8.7/extraDistr/tests/testthat/test-p-r-random-tests.R | 8 extraDistr-1.8.7/extraDistr/tests/testthat/test-probabilities.R | 4 extraDistr-1.8.7/extraDistr/tests/testthat/test-quantile-functions.R | 6 extraDistr-1.8.7/extraDistr/tests/testthat/test-rng-coverge.R | 2 extraDistr-1.8.7/extraDistr/tests/testthat/test-zero-length.R | 30 36 files changed, 779 insertions(+), 725 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-22 0.1.0
Title: Rank Preserving Structural Failure Time Models
Description: Implements methods described by the paper Robins and Tsiatis (1991) <DOI:10.1080/03610929108830654>. These use g-estimation to estimate the causal effect of a treatment in a two-armed randomised control trial where non-compliance exists and is measured, under an assumption of an accelerated failure time model and no unmeasured confounders.
Author: Simon Bond [aut, cre] (primary author of code, secondary author of
vignette),
Annabel Allison [aut] (primary author of vignette, secondary author of
code)
Maintainer: Simon Bond <simon.bond@addenbrookes.nhs.uk>
Diff between rpsftm versions 1.1.0 dated 2017-04-07 and 1.2.0 dated 2017-09-22
DESCRIPTION | 12 MD5 | 98 - NAMESPACE | 39 NEWS.md | 90 - R/data.R | 42 R/est_eqn.R | 80 - R/extract_z.R | 118 - R/plot.rpsftm.R | 62 R/print.rpsftm.R | 295 ++- R/rand.R | 59 R/residuals.rpsftm.R |only R/rpsftm-package.R | 36 R/rpsftm.R | 645 ++++---- R/summary.rpsftm.R | 299 ++-- R/survfit.rpsftm.R |only R/terms.inner.R | 56 R/untreated.R | 96 - README.md | 79 - build/vignette.rds |binary inst/doc/rpsftm_vignette.R | 138 - inst/doc/rpsftm_vignette.Rmd | 581 +++---- inst/doc/rpsftm_vignette.html | 715 ++++----- man/est_eqn.Rd | 81 - man/extract_z.Rd | 90 - man/immdef.Rd | 61 man/plot.rpsftm.Rd | 62 man/print.coxph.Rd | 39 man/print.rand.Rd |only man/print.rpsftm.Rd | 45 man/print.summary.coxph.Rd | 45 man/print.summary.survreg.Rd | 39 man/print.survreg.Rd | 35 man/rand.Rd | 58 man/residuals.rpsftm.Rd |only man/rpsftm-package.Rd | 51 man/rpsftm.Rd | 189 +- man/summary.rpsftm.Rd | 45 man/survfit.rpsftm.Rd |only man/terms.inner.Rd | 41 man/untreated.Rd | 71 tests/testthat.R | 8 tests/testthat/multi_root.Rdata |only tests/testthat/test_errors.R | 462 +++--- tests/testthat/test_rpsftm.R | 707 ++++----- tools/README-unnamed-chunk-2-1.png |binary vignettes/dev/adjustedHR.Rmd | 216 +- vignettes/dev/rpsftm_vignette_v1.Rmd | 574 +++---- vignettes/dev/rpsftm_vignette_v2.Rmd | 744 +++++----- vignettes/rpsftm_vignette.Rmd | 581 +++---- vignettes/rpsftm_vignette_files/figure-html/unnamed-chunk-12-1.png |binary vignettes/rpsftm_vignette_files/figure-html/unnamed-chunk-5-1.png |binary vignettes/rpsftm_vignette_files/figure-html/unnamed-chunk-7-1.png |binary vignettes/rpsftm_vignette_files/figure-html/unnamed-chunk-9-1.png |binary 53 files changed, 4030 insertions(+), 3754 deletions(-)
Title: Floating-Point Genetic Algorithms with Statistical Forecast
Based Inheritance Operator
Description: The implemented algorithm performs a floating-point genetic algorithm search with a statistical forecasting operator that generates offspring which probably will be generated in future generations. Use of this operator enhances the search capabilities of floating-point genetic algorithms because offspring generated by usual genetic operators rapidly forecasted before performing more generations.
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>
Diff between forega versions 1.0 dated 2016-01-02 and 1.0.2 dated 2017-09-22
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- R/forecasting_ga.R | 2 +- man/forega-package.Rd | 4 ++-- src/registerDynamicSymbol.c |only 5 files changed, 11 insertions(+), 10 deletions(-)
Title: Implementation of Augmented Network Log Anomaly Detection
Procedures
Description: Implements procedures to aid in detecting network log anomalies. By
combining various multivariate analytic approaches relevant to network anomaly
detection, it provides cyber analysts efficient means to detect suspected
anomalies requiring further evaluation.
Author: Andrew McCarthy [aut, cre],
Brandon Greenwell [aut],
Bradley Boehmke [aut],
Robert Gutierrez [aut],
Kenneth Bauer [ctb],
Trevor Bihl [ctb],
Cade Saie [ctb]
Maintainer: Andrew McCarthy <andrew.mccarthy@theperducogroup.com>
Diff between anomalyDetection versions 0.2.3 dated 2017-09-14 and 0.2.4 dated 2017-09-22
DESCRIPTION | 12 +- MD5 | 20 +-- R/hmat.R | 11 + R/mc_adjust.R | 130 +++++---------------- R/tabulate_state_vector.R | 32 +++-- inst/doc/Introduction.Rmd | 2 inst/doc/Introduction.html | 166 ++++++++++++++-------------- man/hmat.Rd | 5 tests/testthat/test_mc_adjust.R | 4 tests/testthat/test_tabulate_state_vector.R | 2 vignettes/Introduction.Rmd | 2 11 files changed, 172 insertions(+), 214 deletions(-)
More information about anomalyDetection at CRAN
Permanent link
Title: Read-Write Support for 'NumPy' Files via 'Rcpp'
Description: The 'cnpy' library written by Carl Rogers provides read and write
facilities for files created with (or for) the 'NumPy' extension for 'Python'.
Vectors and matrices of numeric types can be read or written to and from
files as well as compressed files. Support for integer files is available if
the package has been built with -std=c++11 which is the default starting
with release 0.2.3 following the release of R 3.1.0, and available on all
platforms following the release of R 3.3.0 with the updated 'Rtools'.
Author: Dirk Eddelbuettel and Wush Wu
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppCNPy versions 0.2.6 dated 2016-09-26 and 0.2.7 dated 2017-09-22
RcppCNPy-0.2.6/RcppCNPy/inst/doc/RcppCNPy-intro.Rnw |only RcppCNPy-0.2.6/RcppCNPy/vignettes/RcppCNPy-intro.Rnw |only RcppCNPy-0.2.7/RcppCNPy/ChangeLog | 23 ++++++++ RcppCNPy-0.2.7/RcppCNPy/DESCRIPTION | 12 ++-- RcppCNPy-0.2.7/RcppCNPy/MD5 | 23 ++++---- RcppCNPy-0.2.7/RcppCNPy/NAMESPACE | 4 - RcppCNPy-0.2.7/RcppCNPy/README.md | 2 RcppCNPy-0.2.7/RcppCNPy/build/vignette.rds |binary RcppCNPy-0.2.7/RcppCNPy/cleanup | 6 +- RcppCNPy-0.2.7/RcppCNPy/inst/NEWS.Rd | 7 ++ RcppCNPy-0.2.7/RcppCNPy/inst/doc/RcppCNPy-intro.R | 53 +++++-------------- RcppCNPy-0.2.7/RcppCNPy/inst/doc/RcppCNPy-intro.Rmd |only RcppCNPy-0.2.7/RcppCNPy/inst/doc/RcppCNPy-intro.pdf |binary RcppCNPy-0.2.7/RcppCNPy/src/init.c |only RcppCNPy-0.2.7/RcppCNPy/vignettes/RcppCNPy-intro.Rmd |only 15 files changed, 69 insertions(+), 61 deletions(-)
Title: BMRB Data Access and Visualization
Description: The Biological Magnetic Resonance Data Bank (BMRB,<http://
www.bmrb.wisc.edu/>) collects, annotates, archives, and disseminates (worldwide
in the public domain) the important spectral and quantitative data derived
from NMR(Nuclear Magnetic Resonance) spectroscopic investigations of biological
macromolecules and metabolites. This package provides an interface to BMRB
database for easy data access and includes a minimal set of data visualization
functions. Users are encouraged to make their own data visualizations using BMRB
data.
Author: Kumaran Baskaran
Maintainer: Kumaran Baskaran<kbaskaran@bmrb.wisc.edu>
Diff between RBMRB versions 2.0.4 dated 2017-03-03 and 2.1.0 dated 2017-09-22
RBMRB-2.0.4/RBMRB/man/chemical_shift_corr.Rd |only RBMRB-2.1.0/RBMRB/DESCRIPTION | 25 RBMRB-2.1.0/RBMRB/MD5 | 39 - RBMRB-2.1.0/RBMRB/NAMESPACE | 6 RBMRB-2.1.0/RBMRB/R/RBMRB.R | 679 +++++++++++++------ RBMRB-2.1.0/RBMRB/man/HSQC_13C.Rd | 1 RBMRB-2.1.0/RBMRB/man/HSQC_15N.Rd | 1 RBMRB-2.1.0/RBMRB/man/TOCSY.Rd | 1 RBMRB-2.1.0/RBMRB/man/atom_chem_shift_corr.Rd |only RBMRB-2.1.0/RBMRB/man/chem_shift_corr.Rd |only RBMRB-2.1.0/RBMRB/man/chemical_shift_hist.Rd | 11 RBMRB-2.1.0/RBMRB/man/chemical_shift_hist_res.Rd |only RBMRB-2.1.0/RBMRB/man/chemical_shift_hists.Rd | 3 RBMRB-2.1.0/RBMRB/man/convert_cs_to_c13hsqc.Rd | 1 RBMRB-2.1.0/RBMRB/man/convert_cs_to_n15hsqc.Rd | 1 RBMRB-2.1.0/RBMRB/man/convert_cs_to_tocsy.Rd | 1 RBMRB-2.1.0/RBMRB/man/export_star_data.Rd | 3 RBMRB-2.1.0/RBMRB/man/fetch_atom_chemical_shifts.Rd | 15 RBMRB-2.1.0/RBMRB/man/fetch_entry_chemical_shifts.Rd | 11 RBMRB-2.1.0/RBMRB/man/fetch_entry_cs.Rd |only RBMRB-2.1.0/RBMRB/man/fetch_res_chemical_shifts.Rd | 9 RBMRB-2.1.0/RBMRB/man/filter_residue.Rd | 3 RBMRB-2.1.0/RBMRB/man/makeRandomString.Rd | 1 23 files changed, 533 insertions(+), 278 deletions(-)
Title: The MBESS R Package
Description: Implements methods that useful in designing research studies and analyzing data, with
particular emphasis on methods that are developed for or used within the behavioral,
educational, and social sciences (broadly defined). That being said, many of the methods
implemented within MBESS are applicable to a wide variety of disciplines. MBESS has a
suite of functions for a variety of related topics, such as effect sizes, confidence intervals
for effect sizes (including standardized effect sizes and noncentral effect sizes), sample size
planning (from the accuracy in parameter estimation [AIPE], power analytic, equivalence, and
minimum-risk point estimation perspectives), mediation analysis, various properties of
distributions, and a variety of utility functions. MBESS (pronounced 'em-bes') was originally
an acronym for 'Methods for the Behavioral, Educational, and Social Sciences,' but at this
point MBESS contains methods applicable and used in a wide variety of fields and is an
orphan acronym, in the sense that what was an acronym is now literally its name. MBESS has
greatly benefited from others, see <http://nd.edu/~kkelley/site/MBESS.html> for a detailed
list of those that have contributed and other details.
Author: Ken Kelley [aut, cre]
Maintainer: Ken Kelley <kkelley@nd.edu>
Diff between MBESS versions 4.3.0 dated 2017-06-06 and 4.4.0 dated 2017-09-22
DESCRIPTION | 9 MD5 | 8 R/upsilon.R | 706 ++------------------------------------------------- man/MBESS-package.Rd | 4 man/upsilon.Rd | 204 +------------- 5 files changed, 60 insertions(+), 871 deletions(-)
Title: Variable Selection for Model-Based Clustering of Continuous,
Count, Categorical or Mixed-Type Data Set with Missing Values
Description: Variable Selection for model-based clustering managed by the Latent
Class Model. This model analyses mixed-type data (data with continuous and/
or count and/or categorical variables) with missing values (missing at random)
by assuming independence between classes. The one-dimensional marginals of
the components follow standard distributions for facilitating both the model
interpretation and the model selection. The variable selection is led by an
alternated optimization procedure for maximizing the Maximum Integrated
Complete-data Likelihood criterion. The maximum likelihood inference is done
by an EM algorithm for the selected model. This package also performs the
imputation of missing values by taking the expectation of the missing values
conditionally on the model, its parameters and on the observed variables.
Author: Matthieu Marbac and Mohammed Sedki
Maintainer: Mohammed Sedki <mohammed.sedki@u-psud.fr>
Diff between VarSelLCM versions 1.2 dated 2015-06-10 and 2.0 dated 2017-09-22
VarSelLCM-1.2/VarSelLCM/data/banknote.rda |only VarSelLCM-1.2/VarSelLCM/man/VSLCMdataContinuous-class.Rd |only VarSelLCM-1.2/VarSelLCM/man/VSLCMparametersContinuous-class.Rd |only VarSelLCM-1.2/VarSelLCM/man/VarSeLCluster.Rd |only VarSelLCM-1.2/VarSelLCM/man/VarSelImputation.Rd |only VarSelLCM-1.2/VarSelLCM/man/banknote.Rd |only VarSelLCM-1.2/VarSelLCM/man/print-methods.Rd |only VarSelLCM-2.0/VarSelLCM/DESCRIPTION | 30 VarSelLCM-2.0/VarSelLCM/MD5 | 109 +- VarSelLCM-2.0/VarSelLCM/NAMESPACE | 38 VarSelLCM-2.0/VarSelLCM/R/CheckInputs.R | 11 VarSelLCM-2.0/VarSelLCM/R/DataCstr.R | 308 ++++++- VarSelLCM-2.0/VarSelLCM/R/DesignOutput.R | 213 +++++ VarSelLCM-2.0/VarSelLCM/R/ICLexact.R | 106 ++ VarSelLCM-2.0/VarSelLCM/R/Imputation.R | 54 + VarSelLCM-2.0/VarSelLCM/R/Plot.R |only VarSelLCM-2.0/VarSelLCM/R/Print.R | 196 ++++ VarSelLCM-2.0/VarSelLCM/R/RcppExports.R | 12 VarSelLCM-2.0/VarSelLCM/R/Summary.R | 190 ++++ VarSelLCM-2.0/VarSelLCM/R/VSLCMGrlClasses.R | 324 +++++++ VarSelLCM-2.0/VarSelLCM/R/VarSelLCM.R | 412 +++++++--- VarSelLCM-2.0/VarSelLCM/R/withoutmixture.R | 143 +++ VarSelLCM-2.0/VarSelLCM/data/heart.rda |only VarSelLCM-2.0/VarSelLCM/inst/include/Algorithm.h | 3 VarSelLCM-2.0/VarSelLCM/inst/include/AlgorithmCategorical.h |only VarSelLCM-2.0/VarSelLCM/inst/include/AlgorithmInteger.h |only VarSelLCM-2.0/VarSelLCM/inst/include/AlgorithmMixed.h |only VarSelLCM-2.0/VarSelLCM/inst/include/DataCategorical.h |only VarSelLCM-2.0/VarSelLCM/inst/include/DataInteger.h |only VarSelLCM-2.0/VarSelLCM/inst/include/DataMixed.h |only VarSelLCM-2.0/VarSelLCM/inst/include/ParamCategorical.h |only VarSelLCM-2.0/VarSelLCM/inst/include/ParamContinuous.h | 3 VarSelLCM-2.0/VarSelLCM/inst/include/ParamInteger.h |only VarSelLCM-2.0/VarSelLCM/inst/include/ParamMixed.h |only VarSelLCM-2.0/VarSelLCM/inst/include/XEM.h | 6 VarSelLCM-2.0/VarSelLCM/inst/include/XEMCategorical.h |only VarSelLCM-2.0/VarSelLCM/inst/include/XEMContinuous.h | 2 VarSelLCM-2.0/VarSelLCM/inst/include/XEMInteger.h |only VarSelLCM-2.0/VarSelLCM/inst/include/XEMMixed.h |only VarSelLCM-2.0/VarSelLCM/inst/include/XEMPen.h |only VarSelLCM-2.0/VarSelLCM/man/VSLCMcriteria-class.Rd | 35 VarSelLCM-2.0/VarSelLCM/man/VSLCMdataCategorical-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMdataContinous-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMdataInteger-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMdataMixed-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMmodel-class.Rd | 28 VarSelLCM-2.0/VarSelLCM/man/VSLCMparamCategorical-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMparamContinuous-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMparamInteger-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMparamMixed-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMpartitions-class.Rd | 28 VarSelLCM-2.0/VarSelLCM/man/VSLCMresultsCategorical-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMresultsContinuous-class.Rd | 35 VarSelLCM-2.0/VarSelLCM/man/VSLCMresultsInteger-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMresultsMixed-class.Rd |only VarSelLCM-2.0/VarSelLCM/man/VSLCMstrategy-class.Rd | 40 VarSelLCM-2.0/VarSelLCM/man/VarSelCluster.Rd |only VarSelLCM-2.0/VarSelLCM/man/VarSelLCM-package.Rd | 84 +- VarSelLCM-2.0/VarSelLCM/man/heart.Rd |only VarSelLCM-2.0/VarSelLCM/man/summary-methods.Rd | 38 VarSelLCM-2.0/VarSelLCM/src/Algorithm.cpp | 37 VarSelLCM-2.0/VarSelLCM/src/AlgorithmCategorical.cpp |only VarSelLCM-2.0/VarSelLCM/src/AlgorithmInteger.cpp |only VarSelLCM-2.0/VarSelLCM/src/AlgorithmMixed.cpp |only VarSelLCM-2.0/VarSelLCM/src/DataCategorical.cpp |only VarSelLCM-2.0/VarSelLCM/src/DataInteger.cpp |only VarSelLCM-2.0/VarSelLCM/src/DataMixed.cpp |only VarSelLCM-2.0/VarSelLCM/src/ParamCategorical.cpp |only VarSelLCM-2.0/VarSelLCM/src/ParamContinuous.cpp | 61 + VarSelLCM-2.0/VarSelLCM/src/ParamInteger.cpp |only VarSelLCM-2.0/VarSelLCM/src/ParamMixed.cpp |only VarSelLCM-2.0/VarSelLCM/src/RcppExports.cpp | 36 VarSelLCM-2.0/VarSelLCM/src/VarSelLCM-init.c |only VarSelLCM-2.0/VarSelLCM/src/VarSelLCMmixte.cpp | 72 + VarSelLCM-2.0/VarSelLCM/src/XEM.cpp | 56 - VarSelLCM-2.0/VarSelLCM/src/XEMCategorical.cpp |only VarSelLCM-2.0/VarSelLCM/src/XEMContinuous.cpp | 13 VarSelLCM-2.0/VarSelLCM/src/XEMInteger.cpp |only VarSelLCM-2.0/VarSelLCM/src/XEMMixed.cpp |only VarSelLCM-2.0/VarSelLCM/src/XEMPen.cpp |only 80 files changed, 2254 insertions(+), 469 deletions(-)
Title: Statistical Shape Analysis
Description: Routines for the statistical analysis of landmark
shapes, including Procrustes analysis, graphical displays, principal
components analysis, permutation and bootstrap tests, thin-plate
spline transformation grids and comparing covariance matrices.
See Dryden, I.L. and Mardia, K.V. (2016). Statistical shape analysis,
with Applications in R (2nd Edition), John Wiley and Sons.
Author: Ian L. Dryden
Maintainer: Ian Dryden <ian.dryden@nottingham.ac.uk>
Diff between shapes versions 1.2.0 dated 2017-02-02 and 1.2.1 dated 2017-09-22
DESCRIPTION | 12 ++++---- MD5 | 64 ++++++++++++++++++++++----------------------- R/shapes.R | 5 ++- data/apes.rda |binary data/brains.rda |binary data/cortical.rda |binary data/digit3.dat.rda |binary data/dna.dat.rda |binary data/gels.rda |binary data/gorf.dat.rda |binary data/gorm.dat.rda |binary data/humanmove.rda |binary data/macaques.rda |binary data/macf.dat.rda |binary data/macm.dat.rda |binary data/mice.rda |binary data/nsa.rda |binary data/panf.dat.rda |binary data/panm.dat.rda |binary data/pongof.dat.rda |binary data/pongom.dat.rda |binary data/protein.rda |binary data/qcet2.dat.rda |binary data/qlet2.dat.rda |binary data/qset2.dat.rda |binary data/rats.rda |binary data/sand.rda |binary data/schizophrenia.dat.rda |binary data/schizophrenia.rda |binary data/shells.rda |binary data/sooty.dat.rda |binary data/sooty.rda |binary data/steroids.rda |binary 33 files changed, 41 insertions(+), 40 deletions(-)
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.3.
Author: Jean-Romain Roussel [aut, cre, cph],
Martin Isenburg [cph] (Is the author of the LASlib and LASzip
libraries),
David Auty [ctb] (Reviewed the documentation),
Pierrick Marie [ctb] (Helped to compile LASlib code in R),
Florian De Boissieu [ctb] (Enable support of .lax file)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between rlas versions 1.1.4 dated 2017-06-27 and 1.1.5 dated 2017-09-22
rlas-1.1.4/rlas/src/include |only rlas-1.1.5/rlas/DESCRIPTION | 9 rlas-1.1.5/rlas/MD5 | 169 +++++---- rlas-1.1.5/rlas/NAMESPACE | 1 rlas-1.1.5/rlas/NEWS.md | 15 rlas-1.1.5/rlas/R/RcppExports.R | 22 - rlas-1.1.5/rlas/R/readLAS.r | 104 ++++-- rlas-1.1.5/rlas/R/writeLAX.r |only rlas-1.1.5/rlas/README.md | 2 rlas-1.1.5/rlas/inst/include |only rlas-1.1.5/rlas/man/readlasdata.Rd | 31 - rlas-1.1.5/rlas/man/writelax.Rd |only rlas-1.1.5/rlas/src/Makevars | 5 rlas-1.1.5/rlas/src/Makevars.win | 5 rlas-1.1.5/rlas/src/RcppExports.cpp | 88 ++++- rlas-1.1.5/rlas/src/init.c | 24 - rlas-1.1.5/rlas/src/point_in_polygon.cpp |only rlas-1.1.5/rlas/src/readLAS.cpp | 529 ++++++++++++++----------------- rlas-1.1.5/rlas/src/readheader.cpp |only rlas-1.1.5/rlas/src/writeLAS.cpp | 4 rlas-1.1.5/rlas/src/writeLAX.cpp |only 21 files changed, 544 insertions(+), 464 deletions(-)
Title: Multiple Mediation Analysis
Description: Used for general multiple mediation analysis.
The analysis method is described in Yu et al. (2014) <doi:10.4172/2155-6180.1000189> "General Multiple Mediation Analysis With an Application to Explore Racial Disparity in Breast Cancer Survival", published on Journal of Biometrics & Biostatistics, 5(2):189; and Yu et al.(2017) <DOI:10.1016/j.sste.2017.02.001> "Exploring racial disparity in obesity: a mediation analysis considering geo-coded environmental factors", published on Spatial and Spatio-temporal Epidemiology, 21, 13-23.
Author: Qingzhao Yu and Bin Li
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between mma versions 5.0-0 dated 2017-03-29 and 5.0-1 dated 2017-09-22
DESCRIPTION | 13 - MD5 | 24 +- NAMESPACE | 1 R/mma.r | 553 ++++++++++++++++++++++++++++++++-------------------- man/boot.med.Rd | 5 man/boot.med.par.Rd | 7 man/data.org.Rd | 4 man/med.Rd | 8 man/med.par.Rd | 2 man/mma.Rd | 8 man/mma.par.Rd | 7 man/print.mma.Rd | 5 man/summary.mma.Rd | 5 13 files changed, 401 insertions(+), 241 deletions(-)
Title: Event History Analysis
Description: Sampling of risk sets in Cox regression, selections in
the Lexis diagram, bootstrapping. Parametric proportional
hazards fitting with left truncation and right censoring for
common families of distributions, piecewise constant hazards,
and discrete models. AFT regression for left truncated and
right censored data. Binary and Poisson regression for
clustered data, fixed and random effects with bootstrapping.
Author: Göran Broström [aut, cre]
Maintainer: Göran Broström <goran.brostrom@umu.se>
Diff between eha versions 2.4-5 dated 2017-05-03 and 2.4-6 dated 2017-09-22
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/addMeans.R | 13 ++++++++----- R/aftp1.R | 7 ++++--- R/aftreg.R | 1 + R/aftreg.fit.R | 13 +++++++++---- R/phreg.R | 5 +++-- build/vignette.rds |binary inst/doc/glmmML.pdf |binary inst/doc/parametric.pdf |binary 11 files changed, 44 insertions(+), 28 deletions(-)
Title: Descriptive Statistics OpenBudgets.eu
Description: Estimate and return the needed parameters for visualizations designed for OpenBudgets.eu <http://openbudgets.eu/> datasets. Calculate descriptive statistical measures in Budget data of municipalities across Europe, according to the OpenBudgets.eu data model. There are functions for measuring central tendency and dispersion of amount variables along with their distributions and correlations and the frequencies of categorical variables for a given dataset of the input OpenBudgets.eu fiscal datasets. Also, can be used generally to extract visualization parameters convert them to JSON format and use them as input in a different graphical interface.
Author: Kleanthis Koupidis <koupidis@okfn.gr>, Aikaterini Chatzopoulou <kchatzopoul@okfn.gr>, Charalampos Bratsas <charalampos.bratsas@okfn.org>
Maintainer: Kleanthis Koupidis <koupidis@okfn.gr>
Diff between DescriptiveStats.OBeu versions 1.2.0 dated 2017-09-17 and 1.2.1 dated 2017-09-22
DescriptiveStats.OBeu-1.2.0/DescriptiveStats.OBeu/R/sample_json_link_rudolf.r |only DescriptiveStats.OBeu-1.2.0/DescriptiveStats.OBeu/README.md |only DescriptiveStats.OBeu-1.2.0/DescriptiveStats.OBeu/man/sample_json_link_rudolf.Rd |only DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/DESCRIPTION | 6 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/MD5 | 45 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/R/Wuppertal_df.R | 2 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/R/Wuppertal_openspending.R | 2 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/R/ds.correlation.R | 3 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/R/ds.hist.R | 9 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/R/open_spending.ds.R | 2 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/build/vignette.rds |binary DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/data/Wuppertal_df.RData |binary DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/inst/doc/DescriptiveStats.R | 60 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/inst/doc/DescriptiveStats.Rmd | 196 - DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/inst/doc/DescriptiveStats.html | 1192 +++++----- DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/inst/doc/DescriptiveStatsOPENCPU.R |only DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/inst/doc/DescriptiveStatsOPENCPU.Rmd |only DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/inst/doc/DescriptiveStatsOPENCPU.html |only DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/inst/doc/DescriptiveStatsObeu.R |only DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/inst/doc/DescriptiveStatsObeu.Rmd |only DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/inst/doc/DescriptiveStatsObeu.html |only DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/man/Wuppertal_df.Rd | 2 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/man/Wuppertal_openspending.Rd | 2 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/man/ds.correlation.Rd | 3 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/man/ds.hist.Rd | 9 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/man/open_spending.ds.Rd | 2 DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/vignettes/DescriptiveStats.Rmd | 196 - DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/vignettes/DescriptiveStatsOPENCPU.Rmd |only DescriptiveStats.OBeu-1.2.1/DescriptiveStats.OBeu/vignettes/DescriptiveStatsObeu.Rmd |only 29 files changed, 895 insertions(+), 836 deletions(-)
More information about DescriptiveStats.OBeu at CRAN
Permanent link
Title: Discriminating Well Surveyed Spatial Units from Exhaustive
Biodiversity Databases
Description: It uses species accumulation curves and diverse estimators to assess, at the same time, the levels of survey coverage in multiple geographic cells of a size defined by the user or polygons. It also enables the geographical depiction of observed species richness, survey effort and completeness values including a background with administrative areas.
Author: Cástor Guisande González and Jorge M. Lobo
Maintainer: Cástor Guisande González <castor@uvigo.es>
Diff between KnowBR versions 1.2 dated 2017-03-22 and 1.3 dated 2017-09-22
KnowBR-1.2/KnowBR/man/figures/F6.jpg |only KnowBR-1.2/KnowBR/man/figures/F7.jpg |only KnowBR-1.3/KnowBR/DESCRIPTION | 12 KnowBR-1.3/KnowBR/MD5 | 42 + KnowBR-1.3/KnowBR/NAMESPACE | 21 KnowBR-1.3/KnowBR/R/KnowB.R | 832 +++++++++++++++++--------------- KnowBR-1.3/KnowBR/R/KnowBPolygon.R |only KnowBR-1.3/KnowBR/R/MapCell.R |only KnowBR-1.3/KnowBR/R/MapPolygon.R |only KnowBR-1.3/KnowBR/data/Beetles.RData |binary KnowBR-1.3/KnowBR/data/Estimators.RData |only KnowBR-1.3/KnowBR/data/RFishes.RData |only KnowBR-1.3/KnowBR/data/States.RData |only KnowBR-1.3/KnowBR/data/adworld.RData |binary KnowBR-1.3/KnowBR/data/datalist | 3 KnowBR-1.3/KnowBR/man/Beetles.Rd | 4 KnowBR-1.3/KnowBR/man/Estimators.Rd |only KnowBR-1.3/KnowBR/man/KnowB.Rd | 273 ++++------ KnowBR-1.3/KnowBR/man/KnowBPolygon.Rd |only KnowBR-1.3/KnowBR/man/MapCell.Rd |only KnowBR-1.3/KnowBR/man/MapPolygon.Rd |only KnowBR-1.3/KnowBR/man/RFishes.Rd |only KnowBR-1.3/KnowBR/man/States.Rd |only KnowBR-1.3/KnowBR/man/adworld.Rd | 4 KnowBR-1.3/KnowBR/man/figures/F1.jpg |binary KnowBR-1.3/KnowBR/man/figures/F2.jpg |binary KnowBR-1.3/KnowBR/man/figures/F3.jpg |binary KnowBR-1.3/KnowBR/man/figures/F4.jpg |binary KnowBR-1.3/KnowBR/man/figures/F5.jpg |binary 29 files changed, 620 insertions(+), 571 deletions(-)
Title: Query 'HaploReg' and 'RegulomeDB'
Description: A set of utilities for querying
'HaploReg' <http://archive.broadinstitute.org/mammals/haploreg/haploreg.php>
and 'RegulomeDB' <http://www.regulomedb.org> web-based tools. The package connects to
'HaploReg' or 'RegulomeDB', searches and downloads results, without
opening web pages, directly from R environment.
Results are stored in a data frame that can be directly used in various
kinds of downstream analyses.
Author: Ilya Y. Zhbannikov [aut, cre],
Anatoliy I Yashin [ctb] (Anatoliy supervised the technical/software
development and is a Principal Invesigator of this project)
Maintainer: Ilya Y. Zhbannikov <ilya.zhbannikov@duke.edu>
Diff between haploR versions 1.6.0 dated 2017-08-22 and 1.6.1 dated 2017-09-22
DESCRIPTION | 11 +-- MD5 | 10 +-- inst/NEWS | 4 - inst/doc/haplor-vignette.Rmd | 132 ++++++++++++++++++++++++++++++++++++++++++ inst/doc/haplor-vignette.html | 73 ++++++++++++++++++++++- vignettes/haplor-vignette.Rmd | 132 ++++++++++++++++++++++++++++++++++++++++++ 6 files changed, 346 insertions(+), 16 deletions(-)
Title: Generalised Joint Regression Modelling
Description: Routines for fitting various joint regression models, with several types of covariate effects, in the presence of associated error equations, endogeneity, non-random sample selection or partial observability.
Author: Giampiero Marra <giampiero.marra@ucl.ac.uk> and Rosalba Radice <r.radice@bbk.ac.uk>
Maintainer: Giampiero Marra <giampiero.marra@ucl.ac.uk>
Diff between GJRM versions 0.1-1 dated 2017-07-14 and 0.1-2 dated 2017-09-22
GJRM-0.1-1/GJRM/R/copulaReg.r |only GJRM-0.1-1/GJRM/R/print.copulaReg.r |only GJRM-0.1-1/GJRM/R/print.summary.copulaReg.r |only GJRM-0.1-1/GJRM/R/summary.copulaReg.r |only GJRM-0.1-1/GJRM/man/SemiParBIVObject.Rd |only GJRM-0.1-1/GJRM/man/SemiParTRIVObject.Rd |only GJRM-0.1-1/GJRM/man/copulaReg.Rd |only GJRM-0.1-1/GJRM/man/copulaRegObject.Rd |only GJRM-0.1-1/GJRM/man/copulaSampleSelObject.Rd |only GJRM-0.1-1/GJRM/man/print.copulaReg.Rd |only GJRM-0.1-1/GJRM/man/summary.copulaReg.Rd |only GJRM-0.1-1/GJRM/man/vis.SemiParBIVProbit.Rd |only GJRM-0.1-2/GJRM/ChangeLog | 4 GJRM-0.1-2/GJRM/DESCRIPTION | 6 GJRM-0.1-2/GJRM/MD5 | 203 ++++---- GJRM-0.1-2/GJRM/NAMESPACE | 16 GJRM-0.1-2/GJRM/R/AT.r | 62 +- GJRM-0.1-2/GJRM/R/AT2.r | 16 GJRM-0.1-2/GJRM/R/LM.bpm.r | 6 GJRM-0.1-2/GJRM/R/OR.r | 32 - GJRM-0.1-2/GJRM/R/RR.r | 32 - GJRM-0.1-2/GJRM/R/Reg2Copost.r | 3 GJRM-0.1-2/GJRM/R/SemiParBIV.fit.R | 12 GJRM-0.1-2/GJRM/R/SemiParBIV.fit.post.r | 2 GJRM-0.1-2/GJRM/R/SemiParBIV.r | 44 - GJRM-0.1-2/GJRM/R/SemiParTRIV.fit.post.r | 4 GJRM-0.1-2/GJRM/R/SemiParTRIV.r | 20 GJRM-0.1-2/GJRM/R/Xdpred.r | 4 GJRM-0.1-2/GJRM/R/aCov.r | 2 GJRM-0.1-2/GJRM/R/ass.ms.r | 25 - GJRM-0.1-2/GJRM/R/bcont23twoParC.R | 25 + GJRM-0.1-2/GJRM/R/bcont32twoParC.R | 31 + GJRM-0.1-2/GJRM/R/bcontSurvG.R | 72 ++- GJRM-0.1-2/GJRM/R/bcontSurvGcont2Surv.R |only GJRM-0.1-2/GJRM/R/bcontSurvGuniv.R | 58 +- GJRM-0.1-2/GJRM/R/bconttwoParC.R | 38 + GJRM-0.1-2/GJRM/R/copgHsCond.r |only GJRM-0.1-2/GJRM/R/copulaReg.fit.post.r | 2 GJRM-0.1-2/GJRM/R/copulaSampleSel.r | 28 - GJRM-0.1-2/GJRM/R/distrHsDiscr.r | 6 GJRM-0.1-2/GJRM/R/form.gaml.r | 15 GJRM-0.1-2/GJRM/R/func.OPT.r | 7 GJRM-0.1-2/GJRM/R/gamls.upsv.r | 74 +++ GJRM-0.1-2/GJRM/R/gamlss.fit.post.r | 2 GJRM-0.1-2/GJRM/R/gamlss.r | 109 +++- GJRM-0.1-2/GJRM/R/gjrm.r |only GJRM-0.1-2/GJRM/R/gt.bpm.R | 2 GJRM-0.1-2/GJRM/R/hazsurv.plot.r | 55 +- GJRM-0.1-2/GJRM/R/imputeSS.r | 12 GJRM-0.1-2/GJRM/R/int.postcheck.R | 2 GJRM-0.1-2/GJRM/R/jc.probs.r | 95 +++- GJRM-0.1-2/GJRM/R/jc.probs1.r | 442 +++++++++++++++---- GJRM-0.1-2/GJRM/R/jc.probs2.r | 163 ++++--- GJRM-0.1-2/GJRM/R/jc.probs3.r | 14 GJRM-0.1-2/GJRM/R/jc.probs4.r | 141 +++++- GJRM-0.1-2/GJRM/R/jc.probs5.r |only GJRM-0.1-2/GJRM/R/jc.probs6.r |only GJRM-0.1-2/GJRM/R/overall.sv.r | 38 - GJRM-0.1-2/GJRM/R/overall.svG.R | 440 +++++++++++++------ GJRM-0.1-2/GJRM/R/pen.r | 8 GJRM-0.1-2/GJRM/R/post.check.R | 31 + GJRM-0.1-2/GJRM/R/pream.wm.r | 24 - GJRM-0.1-2/GJRM/R/predict.SemiParBIV.r | 3 GJRM-0.1-2/GJRM/R/prev.r | 18 GJRM-0.1-2/GJRM/R/print.gjrm.r |only GJRM-0.1-2/GJRM/R/print.summary.gjrm.r |only GJRM-0.1-2/GJRM/R/pscr.r | 98 ++++ GJRM-0.1-2/GJRM/R/summary.gjrm.r |only GJRM-0.1-2/GJRM/R/susu.r | 6 GJRM-0.1-2/GJRM/R/susutsn.r | 48 ++ GJRM-0.1-2/GJRM/R/triprobgHs.R | 3 GJRM-0.1-2/GJRM/R/triprobgHsESS.R | 3 GJRM-0.1-2/GJRM/R/triprobgHsSS.R | 3 GJRM-0.1-2/GJRM/R/vis.SemiParBIV.r | 1 GJRM-0.1-2/GJRM/man/AT.Rd | 18 GJRM-0.1-2/GJRM/man/AT2.Rd | 17 GJRM-0.1-2/GJRM/man/GJRM-package.Rd | 35 - GJRM-0.1-2/GJRM/man/LM.bpm.Rd | 6 GJRM-0.1-2/GJRM/man/OR.Rd | 12 GJRM-0.1-2/GJRM/man/RR.Rd | 16 GJRM-0.1-2/GJRM/man/SemiParBIV.Rd | 573 ------------------------- GJRM-0.1-2/GJRM/man/SemiParTRIV.Rd | 291 ------------ GJRM-0.1-2/GJRM/man/VuongClarke.Rd | 2 GJRM-0.1-2/GJRM/man/adjCov.Rd | 11 GJRM-0.1-2/GJRM/man/adjCovSD.Rd | 16 GJRM-0.1-2/GJRM/man/conv.check.Rd | 4 GJRM-0.1-2/GJRM/man/copgHs.Rd | 1 GJRM-0.1-2/GJRM/man/copulaSampleSel.Rd | 363 --------------- GJRM-0.1-2/GJRM/man/gamlss.Rd | 8 GJRM-0.1-2/GJRM/man/gjrm.Rd |only GJRM-0.1-2/GJRM/man/gjrmObject.Rd |only GJRM-0.1-2/GJRM/man/gt.bpm.Rd | 12 GJRM-0.1-2/GJRM/man/hazsurv.plot.Rd | 10 GJRM-0.1-2/GJRM/man/hiv.Rd | 5 GJRM-0.1-2/GJRM/man/imputeSS.Rd | 8 GJRM-0.1-2/GJRM/man/jc.probs.Rd | 32 - GJRM-0.1-2/GJRM/man/logLik.SemiParBIV.Rd | 10 GJRM-0.1-2/GJRM/man/mb.Rd | 6 GJRM-0.1-2/GJRM/man/meps.Rd | 28 - GJRM-0.1-2/GJRM/man/plot.SemiParBIV.Rd | 12 GJRM-0.1-2/GJRM/man/post.check.Rd | 4 GJRM-0.1-2/GJRM/man/predict.SemiParBIV.Rd | 9 GJRM-0.1-2/GJRM/man/prev.Rd | 15 GJRM-0.1-2/GJRM/man/print.SemiParBIV.Rd | 8 GJRM-0.1-2/GJRM/man/print.SemiParTRIV.Rd | 8 GJRM-0.1-2/GJRM/man/print.copulaSampleSel.Rd | 8 GJRM-0.1-2/GJRM/man/print.gjrm.Rd |only GJRM-0.1-2/GJRM/man/resp.check.Rd | 7 GJRM-0.1-2/GJRM/man/summary.SemiParBIV.Rd | 12 GJRM-0.1-2/GJRM/man/summary.SemiParTRIV.Rd | 19 GJRM-0.1-2/GJRM/man/summary.copulaSampleSel.Rd | 15 GJRM-0.1-2/GJRM/man/summary.gamlss.Rd | 6 GJRM-0.1-2/GJRM/man/summary.gjrm.Rd |only GJRM-0.1-2/GJRM/man/vis.SemiParBIV.Rd |only GJRM-0.1-2/GJRM/man/war.Rd | 6 115 files changed, 2059 insertions(+), 2164 deletions(-)
Title: Adaptive Semiparametric Regression with Simultaneous Confidence
Bands
Description: Fits semiparametric regression models with spatially adaptive penalized splines and computes simultaneous confidence bands.
Author: Manuel Wiesenfarth and Tatyana Krivobokova
Maintainer: Manuel Wiesenfarth <m.wiesenfarth@dkfz.de>
Diff between AdaptFitOS versions 0.62 dated 2015-06-16 and 0.65 dated 2017-09-22
DESCRIPTION | 8 +- MD5 | 26 ++++----- NAMESPACE | 14 ++++- R/firstlib.r | 4 + R/predict.asp.r | 2 inst/CITATION | 4 + man/AdaptFitOS-package.Rd | 5 + man/asp2.Rd | 7 ++ man/fitted.asp.Rd | 5 - man/predict.asp.Rd | 123 ++++++++++++++++++++++------------------------ man/residuals.asp.Rd | 75 +++++++++++++--------------- man/summary.asp.Rd | 16 ++++- src/local.h | 2 src/smisc.c | 60 ++++++++++++++++++++++ 14 files changed, 220 insertions(+), 131 deletions(-)
Title: API Client Library for 'Wikidata'
Description: An API client for the Wikidata <http://wikidata.org/> store of
semantic data.
Author: Oliver Keyes [aut, cre], Serena Signorelli [aut, cre],
Christian Graul [ctb], Mikhail Popov [ctb]
Maintainer: Oliver Keyes <ironholds@gmail.com>
Diff between WikidataR versions 1.3.0 dated 2017-05-17 and 1.4.0 dated 2017-09-22
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS | 29 +++++++++++++++++++---------- R/geo.R | 3 --- README.md | 2 +- 5 files changed, 29 insertions(+), 23 deletions(-)
Title: Trust, but Verify
Description: Declarative template-based framework for verifying that objects
meet structural requirements, and auto-composing error messages when they do
not.
Author: Brodie Gaslam [aut, cre],
Paxdiablo [cph] (Hash table implementation in src/pfhash.h),
R Core Team [cph] (Used/adapted several code snippets from R sources,
see src/misc-alike.c and src/valname.c)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between vetr versions 0.2.0 dated 2017-09-17 and 0.2.1 dated 2017-09-22
DESCRIPTION | 8 +- MD5 | 20 ++--- NEWS.md | 20 +++-- inst/doc/alike.html | 18 ++-- inst/doc/vetr.html | 10 +- src/alike.c | 10 +- src/cstringr.c | 1 src/eval.c | 12 +-- src/strsub.c | 6 + tests/unitizer/all-bw.R | 116 +++++++++++++++++--------------- tests/unitizer/all-bw.unitizer/data.rds |binary 11 files changed, 121 insertions(+), 100 deletions(-)
More information about RcmdrPlugin.sutteForecastR at CRAN
Permanent link
More information about googleLanguageR at CRAN
Permanent link
Title: Lasso and Elastic-Net Regularized Generalized Linear Models
Description: Extremely efficient procedures for fitting the entire lasso or elastic-net regularization path for linear regression, logistic and multinomial regression models, Poisson regression and the Cox model. Two recent additions are the multiple-response Gaussian, and the grouped multinomial regression. The algorithm uses cyclical coordinate descent in a path-wise fashion, as described in the paper linked to via the URL below.
Author: Jerome Friedman [aut, cre],
Trevor Hastie [aut, cre],
Noah Simon [aut, ctb],
Junyang Qian [ctb],
Rob Tibshirani [aut, cre]
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between glmnet versions 2.0-12 dated 2017-09-13 and 2.0-13 dated 2017-09-22
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- R/cv.fishnet.R | 20 ++++++++++---------- R/cv.lognet.R | 30 +++++++++++++++--------------- R/cv.multnet.R | 26 +++++++++++++------------- R/elnet.R | 15 ++++++++------- R/mrelnet.R | 26 ++++++++++++++------------ R/predict.coxnet.R | 11 ++++++----- R/predict.elnet.R | 4 ++-- R/predict.fishnet.R | 4 ++-- R/predict.glmnet.R | 1 - R/predict.lognet.R | 8 ++++---- R/predict.mrelnet.R | 6 +++--- R/predict.multnet.R | 30 +++++++++++++++--------------- inst/doc/Coxnet.pdf |binary inst/doc/glmnet_beta.pdf |binary man/glmnet.Rd | 5 +++-- 18 files changed, 119 insertions(+), 112 deletions(-)
Title: Fire-History Analysis in R
Description: Basic tools to analyze forest fire history data (e.g. FHX) in R.
Author: Steven Malevich [aut, cre],
Christopher Guiterman [ctb],
Ellis Margolis [ctb]
Maintainer: Steven Malevich <malevich@email.arizona.edu>
Diff between burnr versions 0.2.0 dated 2017-05-30 and 0.2.1 dated 2017-09-22
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS.md | 11 ++++++++++- R/intervals.R | 13 +++++++++---- README.md | 2 +- build/vignette.rds |binary 6 files changed, 30 insertions(+), 16 deletions(-)