Title: Efficient Sampling for Gaussian Linear Regression with Arbitrary
Priors
Description: Efficient sampling for Gaussian linear regression with arbitrary priors.
Author: P. Richard Hahn, Jingyu He and Hedibert Lopes
Maintainer: Jingyu He <jingyu.he@chicagobooth.edu>
Diff between bayeslm versions 0.2.0 dated 2017-08-23 and 0.3.0 dated 2017-09-26
DESCRIPTION | 10 +- MD5 | 17 ++- NAMESPACE | 15 +++ R/RcppExports.R | 20 ++++ R/bayeslm.R | 208 --------------------------------------------- R/bayeslm.default.R |only R/bayeslm.formula.R |only R/plot.mcmc.R |only R/summary.bayesm.fit.R |only R/summary.mcmc.R |only man/bayeslm.Rd | 63 +++++++++++-- man/summary.bayeslm.fit.Rd |only man/summary.mcmc.Rd |only 13 files changed, 106 insertions(+), 227 deletions(-)
Title: Optimized Kernel Regularized Least Squares
Description: Functions for Kernel-Regularized Least Squares optimized for speed and memory usage are provided along with visualization tools. For working papers, sample code, and recent presentations visit <https://sites.google.com/site/petemohanty/software/>. bigKRLS, as well its dependencies, require current versions of R and its compilers (and RStudio if used). For details, see <https://github.com/rdrr1990/bigKRLS/blob/master/INSTALL.md>.
Author: Pete Mohanty [aut, cre], Robert Shaffer [aut]
Maintainer: Pete Mohanty <pete.mohanty@gmail.com>
Diff between bigKRLS versions 2.0.1 dated 2017-09-17 and 2.0.2 dated 2017-09-26
DESCRIPTION | 6 +-- MD5 | 18 +++++------ R/bigKRLS.R | 68 ++++++++++++++++++++----------------------- inst/doc/bigKRLS_basics.html | 2 - man/bigKRLS.Rd | 9 ++--- man/crossvalidate.bigKRLS.Rd | 14 +++----- man/shiny.bigKRLS.Rd | 12 +++---- man/summary.bigKRLS_CV.Rd | 23 ++++++-------- src/Makevars | 2 - src/Makevars.win | 2 - 10 files changed, 73 insertions(+), 83 deletions(-)
Title: Bayesian Nonparametric Model for Clustering with Mixed Scale
Variables
Description: Bayesian nonparametric approach for clustering that is capable to combine different types of variables (continuous, ordinal and nominal) and also accommodates for different sampling probabilities in a complex survey design. The model is based on a location mixture model with a Poisson-Dirichlet process prior on the location parameters of the associated latent variables. The package performs the clustering model described in Carmona, C., Nieto-Barajas, L. E., Canale, A. (2016) <arXiv:1612.00083>.
Author: Christian Carmona [aut, cre],
Luis Nieto-Barajas [aut],
Antonio Canale [ctb]
Maintainer: Christian Carmona <carmona@stats.ox.ac.uk>
Diff between BNPMIXcluster versions 1.2.2 dated 2017-09-19 and 1.2.4 dated 2017-09-26
DESCRIPTION | 11 ++++----- MD5 | 24 ++++++++++--------- NAMESPACE | 5 +++- R/MIXclustering.R | 56 +++++++++++++++++++++++++++++++--------------- R/plot.MIXcluster.R | 37 ++++++++++++++++++++---------- R/sampling_Lambda_jj.R | 13 ++++++++++ R/sampling_Omega_ij.R | 12 ++++++--- R/sampling_a.R | 10 ++++---- R/sampling_b.R | 11 +++++++++ man/MIXclustering.Rd | 4 ++- man/sampling_Lambda_jj.Rd |only man/sampling_Omega_ij.Rd | 6 ++-- man/sampling_a.Rd | 6 ++-- man/sampling_b.Rd |only 14 files changed, 133 insertions(+), 62 deletions(-)
Title: A Basic Set of Functions for Compositional Data Analysis
Description: A minimum set of functions to perform compositional data analysis
using the log-ratio approach introduced by John Aitchison (1982) <http:www.jstor.org/stable/2345821>. Main functions
have been implemented in c++ for better performance.
Author: Marc Comas-Cufí [aut, cre]
Maintainer: Marc Comas-Cufí <mcomas@imae.udg.edu>
Diff between coda.base versions 0.1.6 dated 2017-08-16 and 0.1.7 dated 2017-09-26
coda.base-0.1.6/coda.base/src/coda.h |only coda.base-0.1.7/coda.base/DESCRIPTION | 10 coda.base-0.1.7/coda.base/MD5 | 43 - coda.base-0.1.7/coda.base/NAMESPACE | 1 coda.base-0.1.7/coda.base/NEWS |only coda.base-0.1.7/coda.base/R/RcppExports.R | 28 + coda.base-0.1.7/coda.base/R/coda.base.R | 6 coda.base-0.1.7/coda.base/R/coordinates.R | 104 +++- coda.base-0.1.7/coda.base/R/onLoad.R |only coda.base-0.1.7/coda.base/R/other.R |only coda.base-0.1.7/coda.base/README.md |only coda.base-0.1.7/coda.base/inst |only coda.base-0.1.7/coda.base/man/alr_basis.Rd | 21 coda.base-0.1.7/coda.base/man/clr_basis.Rd | 18 coda.base-0.1.7/coda.base/man/coordinates.Rd | 5 coda.base-0.1.7/coda.base/man/ilr_basis.Rd | 12 coda.base-0.1.7/coda.base/man/pb_basis.Rd | 32 - coda.base-0.1.7/coda.base/man/print.coda.Rd |only coda.base-0.1.7/coda.base/man/sbp_basis.Rd | 8 coda.base-0.1.7/coda.base/src/Makevars | 3 coda.base-0.1.7/coda.base/src/Makevars.win | 3 coda.base-0.1.7/coda.base/src/RcppExports.cpp | 89 +++ coda.base-0.1.7/coda.base/src/coda.cpp | 4 coda.base-0.1.7/coda.base/src/principal_balances.cpp | 422 ++++++++++++++++ coda.base-0.1.7/coda.base/src/sbp.cpp | 472 ++++++++++++++++++- coda.base-0.1.7/coda.base/src/sbp.h | 6 26 files changed, 1195 insertions(+), 92 deletions(-)
Title: Clusters of Effect Curves in Quantile Regression Models
Description: Clustering method to cluster both curves effects, through quantile regression coefficient modeling, and curves in functional data analysis. Sottile G. and Adelfio G. (2017) <https://iwsm2017.webhosting.rug.nl/IWSM_2017_V2.pdf>.
Author: Gianluca Sottile [aut, cre],
Giada Adelfio [aut]
Maintainer: Gianluca Sottile <gianluca.sottile@unipa.it>
Diff between clustEff versions 0.1.0 dated 2017-09-26 and 0.1.1 dated 2017-09-26
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/clustEff.R | 8 +++++--- man/clustEff-package.Rd | 2 +- man/plot.clustEff.Rd | 7 ++++--- 5 files changed, 19 insertions(+), 16 deletions(-)
Title: Stochastic Gradient Markov Chain Monte Carlo
Description: Provides functions that performs popular stochastic gradient Markov chain Monte Carlo (SGMCMC) methods on user specified models. The required gradients are automatically calculated using 'TensorFlow' <https://www.tensorflow.org/>, an efficient library for numerical computation. This means only the log likelihood and log prior functions need to be specified. The methods implemented include stochastic gradient Langevin dynamics (SGLD), stochastic gradient Hamiltonian Monte Carlo (SGHMC), stochastic gradient Nose-Hoover thermostat (SGNHT) and their respective control variate versions for increased efficiency. References: M. Welling, Y. W. Teh (2011) <http://www.icml-2011.org/papers/398_icmlpaper.pdf>; T. Chen, E. B. Fox, C. E. Guestrin (2014) <arXiv:1402.4102>; N. Ding, Y. Fang, R. Babbush, C. Chen, R. D. Skeel, H. Neven (2014) <https://papers.nips.cc/paper/5592-bayesian-sampling-using-stochastic-gradient-thermostats>; J. Baker, P. Fearnhead, E. B. Fox, C. Nemeth (2017) <arXiv:1706.05439>.
Author: Jack Baker [aut, cre, cph],
Christopher Nemeth [aut, cph],
Paul Fearnhead [aut, cph],
Emily B. Fox [aut, cph],
STOR-i [cph]
Maintainer: Jack Baker <j.baker1@lancaster.ac.uk>
Diff between sgmcmc versions 0.1.0 dated 2017-07-18 and 0.2.0 dated 2017-09-26
sgmcmc-0.1.0/sgmcmc/data |only sgmcmc-0.1.0/sgmcmc/man/covertype.Rd |only sgmcmc-0.2.0/sgmcmc/DESCRIPTION | 15 - sgmcmc-0.2.0/sgmcmc/MD5 | 100 ++++--- sgmcmc-0.2.0/sgmcmc/NAMESPACE | 15 + sgmcmc-0.2.0/sgmcmc/NEWS.md |only sgmcmc-0.2.0/sgmcmc/R/controlVariates.R | 28 +- sgmcmc-0.2.0/sgmcmc/R/data.R | 65 ++++ sgmcmc-0.2.0/sgmcmc/R/dynamics.R |only sgmcmc-0.2.0/sgmcmc/R/setup.R | 11 sgmcmc-0.2.0/sgmcmc/R/sghmc.R | 188 +++----------- sgmcmc-0.2.0/sgmcmc/R/sghmccv.R |only sgmcmc-0.2.0/sgmcmc/R/sgld.R | 145 +++------- sgmcmc-0.2.0/sgmcmc/R/sgldcv.R |only sgmcmc-0.2.0/sgmcmc/R/sgnht.R | 193 +++----------- sgmcmc-0.2.0/sgmcmc/R/sgnhtcv.R |only sgmcmc-0.2.0/sgmcmc/R/storage.R | 46 +++ sgmcmc-0.2.0/sgmcmc/R/update.R | 192 +++++++++----- sgmcmc-0.2.0/sgmcmc/README.md | 3 sgmcmc-0.2.0/sgmcmc/build/vignette.rds |binary sgmcmc-0.2.0/sgmcmc/inst/doc/gaussMixture.R | 9 sgmcmc-0.2.0/sgmcmc/inst/doc/gaussMixture.Rmd | 13 sgmcmc-0.2.0/sgmcmc/inst/doc/gaussMixture.html | 120 --------- sgmcmc-0.2.0/sgmcmc/inst/doc/logisticRegression.R | 45 +-- sgmcmc-0.2.0/sgmcmc/inst/doc/logisticRegression.Rmd | 57 ++-- sgmcmc-0.2.0/sgmcmc/inst/doc/logisticRegression.html | 252 +------------------ sgmcmc-0.2.0/sgmcmc/inst/doc/mvGauss.R | 7 sgmcmc-0.2.0/sgmcmc/inst/doc/mvGauss.Rmd | 11 sgmcmc-0.2.0/sgmcmc/inst/doc/mvGauss.html | 108 -------- sgmcmc-0.2.0/sgmcmc/inst/doc/nn.R |only sgmcmc-0.2.0/sgmcmc/inst/doc/nn.Rmd |only sgmcmc-0.2.0/sgmcmc/inst/doc/nn.html |only sgmcmc-0.2.0/sgmcmc/inst/doc/sgmcmc.Rmd | 4 sgmcmc-0.2.0/sgmcmc/inst/doc/sgmcmc.html | 1 sgmcmc-0.2.0/sgmcmc/man/getDataset.Rd |only sgmcmc-0.2.0/sgmcmc/man/getParams.Rd |only sgmcmc-0.2.0/sgmcmc/man/initSess.Rd |only sgmcmc-0.2.0/sgmcmc/man/sghmc.Rd | 12 sgmcmc-0.2.0/sgmcmc/man/sghmcSetup.Rd |only sgmcmc-0.2.0/sgmcmc/man/sghmccv.Rd | 15 - sgmcmc-0.2.0/sgmcmc/man/sghmccvSetup.Rd |only sgmcmc-0.2.0/sgmcmc/man/sgld.Rd | 8 sgmcmc-0.2.0/sgmcmc/man/sgldSetup.Rd |only sgmcmc-0.2.0/sgmcmc/man/sgldcv.Rd | 11 sgmcmc-0.2.0/sgmcmc/man/sgldcvSetup.Rd |only sgmcmc-0.2.0/sgmcmc/man/sgmcmcStep.Rd |only sgmcmc-0.2.0/sgmcmc/man/sgnht.Rd | 10 sgmcmc-0.2.0/sgmcmc/man/sgnhtSetup.Rd |only sgmcmc-0.2.0/sgmcmc/man/sgnhtcv.Rd | 14 - sgmcmc-0.2.0/sgmcmc/man/sgnhtcvSetup.Rd |only sgmcmc-0.2.0/sgmcmc/tests/testthat/test1dGauss.R | 62 ++-- sgmcmc-0.2.0/sgmcmc/tests/testthat/test3dGauss.R | 62 ++-- sgmcmc-0.2.0/sgmcmc/tests/testthat/testFloat64.R | 14 - sgmcmc-0.2.0/sgmcmc/tests/testthat/testMatrixParam.R | 14 - sgmcmc-0.2.0/sgmcmc/tests/testthat/testOptional.R | 14 - sgmcmc-0.2.0/sgmcmc/tests/testthat/testSeeds.R |only sgmcmc-0.2.0/sgmcmc/tests/testthat/testStepByStep.R |only sgmcmc-0.2.0/sgmcmc/vignettes/gaussMixture.Rmd | 13 sgmcmc-0.2.0/sgmcmc/vignettes/logisticRegression.Rmd | 57 ++-- sgmcmc-0.2.0/sgmcmc/vignettes/mvGauss.Rmd | 11 sgmcmc-0.2.0/sgmcmc/vignettes/nn.Rmd |only sgmcmc-0.2.0/sgmcmc/vignettes/sgmcmc.Rmd | 4 62 files changed, 784 insertions(+), 1165 deletions(-)
Title: Tables with Labels and Some Useful Functions from Spreadsheets
and 'SPSS' Statistics
Description: Package provides tabulation functions with support for 'SPSS'-style
labels, multiple / nested banners, weights, multiple-response variables
and significance testing. There are facilities for nice output of tables
in 'knitr', R notebooks, 'Shiny' and 'Jupyter' notebooks. Proper methods
for labelled variables add value labels support to base R functions and to
some functions from other packages. Additionally, the package offers
useful functions for data processing in marketing research / social
surveys - popular data transformation functions from 'SPSS' Statistics
('RECODE', 'COUNT', 'COMPUTE', 'DO IF', etc.) and 'Excel' ('COUNTIF',
'VLOOKUP', etc.). Package is intended to help people to move data
processing from 'Excel'/'SPSS' to R.
Author: Gregory Demin
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between expss versions 0.8.1 dated 2017-08-10 and 0.8.2 dated 2017-09-26
expss-0.8.1/expss/man/dtfrm.Rd |only expss-0.8.2/expss/DESCRIPTION | 10 expss-0.8.2/expss/MD5 | 798 +++++++++++++++++++- expss-0.8.2/expss/NAMESPACE | 9 expss-0.8.2/expss/NEWS | 9 expss-0.8.2/expss/R/aaa_utils.R | 8 expss-0.8.2/expss/R/common_table_utils.R | 18 expss-0.8.2/expss/R/cro.R | 716 ++++++++++++----- expss-0.8.2/expss/R/cro_fun.R | 22 expss-0.8.2/expss/R/dtfrm.R | 34 expss-0.8.2/expss/R/from_text.R |only expss-0.8.2/expss/R/if_val.R | 11 expss-0.8.2/expss/R/keep.R | 5 expss-0.8.2/expss/R/labels.R | 14 expss-0.8.2/expss/R/selectors.R | 19 expss-0.8.2/expss/R/significance_cpct.R | 57 - expss-0.8.2/expss/R/significance_means.R | 11 expss-0.8.2/expss/R/zzz_experimental.R | 67 - expss-0.8.2/expss/inst/doc/TablesWithLabelsInR.R | 35 expss-0.8.2/expss/inst/doc/TablesWithLabelsInR.Rmd | 35 expss-0.8.2/expss/inst/doc/TablesWithLabelsInR.html | 39 expss-0.8.2/expss/man/cro.Rd | 45 - expss-0.8.2/expss/man/experimental.Rd | 10 expss-0.8.2/expss/man/from_text.Rd |only expss-0.8.2/expss/man/sheet.Rd |only expss-0.8.2/expss/man/vars.Rd | 19 expss-0.8.2/expss/tests |only expss-0.8.2/expss/vignettes/TablesWithLabelsInR.Rmd | 35 28 files changed, 1524 insertions(+), 502 deletions(-)
Title: Error Propagation for R Vectors
Description: Support for painless automatic error propagation in numerical operations.
Author: Iñaki Ucar [aut, cph, cre]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between errors versions 0.0.2 dated 2017-06-07 and 0.1.0 dated 2017-09-26
DESCRIPTION | 9 - MD5 | 38 +++---- NAMESPACE | 49 +-------- NEWS.md | 13 ++ R/errors.R | 11 -- R/math.R | 223 +++++++++--------------------------------- R/misc.R | 22 ++++ R/ops.R | 78 +++++++------- R/plot.R | 7 - R/print.R | 30 +++-- R/summary.R | 55 +++++----- R/utils.R | 5 README.md | 17 ++- man/errors.Rd | 3 man/matmult.Rd |only man/type_sum.errors.Rd |only tests/testthat/test-errors.R | 19 +++ tests/testthat/test-misc.R | 15 ++ tests/testthat/test-ops.R | 40 +++++-- tests/testthat/test-print.R | 9 + tests/testthat/test-summary.R | 3 21 files changed, 308 insertions(+), 338 deletions(-)
Title: Kaplan-Meier Multiple Imputation for the Analysis of Cumulative
Incidence Functions in the Competing Risks Setting
Description: Performs a Kaplan-Meier multiple imputation to recover the missing potential censoring information from competing risks events, so that standard right-censored methods could be applied to the imputed data sets to perform analyses of the cumulative incidence functions (Allignol and Beyersmann, 2010 <doi:10.1093/biostatistics/kxq018>).
Author: Arthur Allignol <arthur.allignol@gmail.com>
Maintainer: Arthur Allignol <arthur.allignol@gmail.com>
Diff between kmi versions 0.5.2 dated 2017-01-13 and 0.5.3 dated 2017-09-26
ChangeLog | 9 +++++++-- DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- man/cox.kmi.Rd | 2 +- man/kmi-package.Rd | 4 ++-- man/kmi.Rd | 2 +- man/print.cox.kmi.Rd | 2 +- man/print.summary.cox.kmi.Rd | 2 +- man/summary.cox.kmi.Rd | 2 +- 9 files changed, 28 insertions(+), 23 deletions(-)
More information about coinmarketcapr at CRAN
Permanent link
Title: Perform Spatial Error Estimation and Variable Importance in
Parallel
Description: Implements spatial error estimation and
permutation-based variable importance measures for predictive models using
spatial cross-validation and spatial block bootstrap.
Author: Alexander Brenning [aut, cre],
Patrick Schratz [aut],
Tobias Herrmann [aut]
Maintainer: Alexander Brenning <alexander.brenning@uni-jena.de>
Diff between sperrorest versions 2.0.1 dated 2017-07-21 and 2.1.0 dated 2017-09-26
sperrorest-2.0.1/sperrorest/inst/testfiles |only sperrorest-2.1.0/sperrorest/DESCRIPTION | 12 sperrorest-2.1.0/sperrorest/MD5 | 45 -- sperrorest-2.1.0/sperrorest/NAMESPACE | 5 sperrorest-2.1.0/sperrorest/NEWS | 9 sperrorest-2.1.0/sperrorest/NEWS.md | 24 - sperrorest-2.1.0/sperrorest/R/helper_funs.R | 7 sperrorest-2.1.0/sperrorest/R/processing.R | 173 +++++++--- sperrorest-2.1.0/sperrorest/R/sperrorest.R | 47 ++ sperrorest-2.1.0/sperrorest/R/sperrorest_error.R | 14 sperrorest-2.1.0/sperrorest/R/sperrorest_resampling.R | 6 sperrorest-2.1.0/sperrorest/README.md | 7 sperrorest-2.1.0/sperrorest/data/ecuador.rda |binary sperrorest-2.1.0/sperrorest/inst/doc/spatial-modeling-use-case.R | 2 sperrorest-2.1.0/sperrorest/inst/doc/spatial-modeling-use-case.Rmd | 2 sperrorest-2.1.0/sperrorest/man/partition_kmeans.Rd | 6 sperrorest-2.1.0/sperrorest/tests/testthat/test-processing.R | 10 sperrorest-2.1.0/sperrorest/tests/testthat/test-sperrorest.R | 55 +++ sperrorest-2.1.0/sperrorest/vignettes/spatial-modeling-use-case.Rmd | 2 19 files changed, 314 insertions(+), 112 deletions(-)
Title: Sensory and Consumer Data Mapping
Description: External preference mapping technique is commonly used in sensory analysis
field to explain consumer preferences in function of sensory attributes of products
Danzart(1998) (<doi:10.1006/fstl.1998.0373>). The package provides map visualization
with options in dimension reduction methods and prediction models from linear and
non linear regressions. A smoothed version of the map performed using LOESS algorithm
is available. A comparison approach of maps stability from different features before
and after smoothing is provided. A 'shiny' application is included. It presents an
easy GUI for the implemented functions as well as a comparative tool of fit models
using several criteria. Basic analysis such as characterization of products,
panelists and sessions likewise consumer segmentation are available.
Author: Ibtihel Rebhi [aut, cre], Rihab Boubakri [ctb], Dhafer Malouche [ctb]
Maintainer: Ibtihel Rebhi <ibtihel.rebhi@enit.utm.tn>
Diff between SensMap versions 0.2 dated 2017-09-25 and 0.3 dated 2017-09-26
DESCRIPTION | 23 +++++++++++------------ MD5 | 10 +++++----- NAMESPACE | 1 + man/PrefMap.Rd | 9 ++++++++- man/SmoothMap.Rd | 9 ++++++++- man/StabMap.Rd | 12 ++++++------ 6 files changed, 39 insertions(+), 25 deletions(-)
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms.
Author: Marc Girondot <marc.girondot@u-psud.fr>
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between embryogrowth versions 6.5 dated 2017-03-12 and 7.0 dated 2017-09-26
embryogrowth-6.5/embryogrowth/R/resultNest_mcmc_3p_Weibull.R |only embryogrowth-6.5/embryogrowth/R/resultNest_mcmc_4p_epsilon.R |only embryogrowth-6.5/embryogrowth/R/resultNest_mcmc_4p_normal.R |only embryogrowth-6.5/embryogrowth/R/resultNest_mcmc_4p_trigo.R |only embryogrowth-6.5/embryogrowth/R/resultNest_mcmc_6p_SSM6p.R |only embryogrowth-6.5/embryogrowth/R/result_mcmc_4p_weight.R |only embryogrowth-6.5/embryogrowth/R/result_mcmc_newp.R |only embryogrowth-6.5/embryogrowth/data/datalist |only embryogrowth-6.5/embryogrowth/data/resultNest_mcmc_3p_Weibull.rda |only embryogrowth-6.5/embryogrowth/data/resultNest_mcmc_4p_epsilon.rda |only embryogrowth-6.5/embryogrowth/data/resultNest_mcmc_4p_normal.rda |only embryogrowth-6.5/embryogrowth/data/resultNest_mcmc_4p_trigo.rda |only embryogrowth-6.5/embryogrowth/data/resultNest_mcmc_6p_SSM6p.rda |only embryogrowth-6.5/embryogrowth/data/resultNest_newp.rda |only embryogrowth-6.5/embryogrowth/data/result_mcmc_4p_weight.rda |only embryogrowth-6.5/embryogrowth/data/result_mcmc_newp.rda |only embryogrowth-6.5/embryogrowth/man/resultNest_mcmc_3p_Weibull.Rd |only embryogrowth-6.5/embryogrowth/man/resultNest_mcmc_4p_epsilon.Rd |only embryogrowth-6.5/embryogrowth/man/resultNest_mcmc_4p_normal.Rd |only embryogrowth-6.5/embryogrowth/man/resultNest_mcmc_4p_trigo.Rd |only embryogrowth-6.5/embryogrowth/man/resultNest_mcmc_6p_SSM6p.Rd |only embryogrowth-6.5/embryogrowth/man/result_mcmc_4p_weight.Rd |only embryogrowth-6.5/embryogrowth/man/result_mcmc_newp.Rd |only embryogrowth-7.0/embryogrowth/DESCRIPTION | 12 embryogrowth-7.0/embryogrowth/MD5 | 133 ++--- embryogrowth-7.0/embryogrowth/NAMESPACE | 1 embryogrowth-7.0/embryogrowth/NEWS | 34 + embryogrowth-7.0/embryogrowth/R/ChangeSSM.R | 2 embryogrowth-7.0/embryogrowth/R/DatabaseTSD.R | 10 embryogrowth-7.0/embryogrowth/R/MovingIncubation.R | 42 + embryogrowth-7.0/embryogrowth/R/P_TRT.R | 180 ++++-- embryogrowth-7.0/embryogrowth/R/SSM.R | 18 embryogrowth-7.0/embryogrowth/R/STRN.R | 165 ++++-- embryogrowth-7.0/embryogrowth/R/STRN_MHmcmc.R | 79 ++- embryogrowth-7.0/embryogrowth/R/STRN_fit.R | 40 - embryogrowth-7.0/embryogrowth/R/TSP.list.R | 21 embryogrowth-7.0/embryogrowth/R/embryogrowth-package.R | 6 embryogrowth-7.0/embryogrowth/R/fonctionSTRNMCMC.R | 7 embryogrowth-7.0/embryogrowth/R/info.nests.R | 258 ++++++---- embryogrowth-7.0/embryogrowth/R/logLik.STRN.R |only embryogrowth-7.0/embryogrowth/R/logLik.tsd.R | 3 embryogrowth-7.0/embryogrowth/R/plot.NestsResult.R | 53 +- embryogrowth-7.0/embryogrowth/R/plot.tsd.R | 4 embryogrowth-7.0/embryogrowth/R/plotR.R | 89 ++- embryogrowth-7.0/embryogrowth/R/predict.tsd.R | 15 embryogrowth-7.0/embryogrowth/R/searchR.R | 36 - embryogrowth-7.0/embryogrowth/R/stages.R | 187 +++++++ embryogrowth-7.0/embryogrowth/R/tsd.R | 39 - embryogrowth-7.0/embryogrowth/R/tsd_MHmcmc.R | 2 embryogrowth-7.0/embryogrowth/R/tsd_MHmcmc_p.R | 2 embryogrowth-7.0/embryogrowth/R/web.tsd.R | 1 embryogrowth-7.0/embryogrowth/data/DatabaseNestingArea.rda |binary embryogrowth-7.0/embryogrowth/data/DatabaseTSD.rda |binary embryogrowth-7.0/embryogrowth/data/TSP.list.rda |binary embryogrowth-7.0/embryogrowth/data/resultNest_3p_Weibull.rda |binary embryogrowth-7.0/embryogrowth/data/resultNest_4p_SSM4p.rda |binary embryogrowth-7.0/embryogrowth/data/resultNest_4p_normal.rda |binary embryogrowth-7.0/embryogrowth/data/resultNest_6p_SSM6p.rda |binary embryogrowth-7.0/embryogrowth/data/stages.rda |binary embryogrowth-7.0/embryogrowth/inst/shiny/ui.R | 2 embryogrowth-7.0/embryogrowth/man/DatabaseTSD.Rd | 10 embryogrowth-7.0/embryogrowth/man/MovingIncubation.Rd | 16 embryogrowth-7.0/embryogrowth/man/P_TRT.Rd | 11 embryogrowth-7.0/embryogrowth/man/STRN.Rd | 107 ++-- embryogrowth-7.0/embryogrowth/man/STRN_MHmcmc.Rd | 67 ++ embryogrowth-7.0/embryogrowth/man/TSP.list.Rd | 21 embryogrowth-7.0/embryogrowth/man/embryogrowth-package.Rd | 6 embryogrowth-7.0/embryogrowth/man/info.nests.Rd | 59 +- embryogrowth-7.0/embryogrowth/man/logLik.STRN.Rd |only embryogrowth-7.0/embryogrowth/man/logLik.tsd.Rd | 3 embryogrowth-7.0/embryogrowth/man/plot.NestsResult.Rd | 29 - embryogrowth-7.0/embryogrowth/man/plot.tsd.Rd | 2 embryogrowth-7.0/embryogrowth/man/plotR.Rd | 17 embryogrowth-7.0/embryogrowth/man/predict.tsd.Rd | 24 embryogrowth-7.0/embryogrowth/man/searchR.Rd | 5 embryogrowth-7.0/embryogrowth/man/stages.Rd | 185 +++++++ embryogrowth-7.0/embryogrowth/man/tsd.Rd | 11 embryogrowth-7.0/embryogrowth/man/tsd_MHmcmc.Rd | 2 embryogrowth-7.0/embryogrowth/man/tsd_MHmcmc_p.Rd | 2 embryogrowth-7.0/embryogrowth/man/web.tsd.Rd | 1 80 files changed, 1466 insertions(+), 553 deletions(-)