Title: Generating Various Numerical Representation Schemes for Protein
Sequences
Description: Comprehensive toolkit for generating various numerical
features of protein sequences described in Xiao et al. (2015)
<DOI:10.1093/bioinformatics/btv042>. For full functionality,
the software 'ncbi-blast+' is needed, see
<https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=BlastDocs&DOC_TYPE=Download>
for more information.
Author: Nan Xiao [aut, cre],
Qing-Song Xu [aut],
Dong-Sheng Cao [aut]
Maintainer: Nan Xiao <me@nanx.me>
Diff between protr versions 1.4-1 dated 2017-07-09 and 1.4-2 dated 2017-09-28
protr-1.4-1/protr/vignettes/header.html |only protr-1.4-2/protr/DESCRIPTION | 10 - protr-1.4-2/protr/MD5 | 171 +++++++++++++--------------- protr-1.4-2/protr/NEWS.md | 7 + protr-1.4-2/protr/R/desc-13-PAAC.R | 8 - protr-1.4-2/protr/R/desc-14-APAAC.R | 10 - protr-1.4-2/protr/README.md | 6 protr-1.4-2/protr/inst/doc/protr.Rmd | 2 protr-1.4-2/protr/inst/doc/protr.html | 7 - protr-1.4-2/protr/man/AA2DACOR.Rd | 1 protr-1.4-2/protr/man/AA3DMoRSE.Rd | 1 protr-1.4-2/protr/man/AAACF.Rd | 1 protr-1.4-2/protr/man/AABLOSUM100.Rd | 1 protr-1.4-2/protr/man/AABLOSUM45.Rd | 1 protr-1.4-2/protr/man/AABLOSUM50.Rd | 1 protr-1.4-2/protr/man/AABLOSUM62.Rd | 1 protr-1.4-2/protr/man/AABLOSUM80.Rd | 1 protr-1.4-2/protr/man/AABurden.Rd | 1 protr-1.4-2/protr/man/AACPSA.Rd | 1 protr-1.4-2/protr/man/AAConn.Rd | 1 protr-1.4-2/protr/man/AAConst.Rd | 1 protr-1.4-2/protr/man/AADescAll.Rd | 1 protr-1.4-2/protr/man/AAEdgeAdj.Rd | 1 protr-1.4-2/protr/man/AAEigIdx.Rd | 1 protr-1.4-2/protr/man/AAFGC.Rd | 1 protr-1.4-2/protr/man/AAGETAWAY.Rd | 1 protr-1.4-2/protr/man/AAGeom.Rd | 1 protr-1.4-2/protr/man/AAInfo.Rd | 1 protr-1.4-2/protr/man/AAMOE2D.Rd | 1 protr-1.4-2/protr/man/AAMOE3D.Rd | 1 protr-1.4-2/protr/man/AAMetaInfo.Rd | 1 protr-1.4-2/protr/man/AAMolProp.Rd | 1 protr-1.4-2/protr/man/AAPAM120.Rd | 1 protr-1.4-2/protr/man/AAPAM250.Rd | 1 protr-1.4-2/protr/man/AAPAM30.Rd | 1 protr-1.4-2/protr/man/AAPAM40.Rd | 1 protr-1.4-2/protr/man/AAPAM70.Rd | 1 protr-1.4-2/protr/man/AARDF.Rd | 1 protr-1.4-2/protr/man/AARandic.Rd | 1 protr-1.4-2/protr/man/AATopo.Rd | 1 protr-1.4-2/protr/man/AATopoChg.Rd | 1 protr-1.4-2/protr/man/AAWHIM.Rd | 1 protr-1.4-2/protr/man/AAWalk.Rd | 1 protr-1.4-2/protr/man/AAindex.Rd | 1 protr-1.4-2/protr/man/OptAA3d.Rd | 1 protr-1.4-2/protr/man/acc.Rd | 7 - protr-1.4-2/protr/man/extractAAC.Rd | 7 - protr-1.4-2/protr/man/extractAPAAC.Rd | 16 +- protr-1.4-2/protr/man/extractBLOSUM.Rd | 7 - protr-1.4-2/protr/man/extractCTDC.Rd | 7 - protr-1.4-2/protr/man/extractCTDCClass.Rd | 7 - protr-1.4-2/protr/man/extractCTDD.Rd | 7 - protr-1.4-2/protr/man/extractCTDDClass.Rd | 7 - protr-1.4-2/protr/man/extractCTDT.Rd | 7 - protr-1.4-2/protr/man/extractCTDTClass.Rd | 7 - protr-1.4-2/protr/man/extractCTriad.Rd | 7 - protr-1.4-2/protr/man/extractCTriadClass.Rd | 7 - protr-1.4-2/protr/man/extractDC.Rd | 7 - protr-1.4-2/protr/man/extractDescScales.Rd | 1 protr-1.4-2/protr/man/extractFAScales.Rd | 7 - protr-1.4-2/protr/man/extractGeary.Rd | 7 - protr-1.4-2/protr/man/extractMDSScales.Rd | 7 - protr-1.4-2/protr/man/extractMoran.Rd | 7 - protr-1.4-2/protr/man/extractMoreauBroto.Rd | 7 - protr-1.4-2/protr/man/extractPAAC.Rd | 14 +- protr-1.4-2/protr/man/extractPSSM.Rd | 7 - protr-1.4-2/protr/man/extractPSSMAcc.Rd | 7 - protr-1.4-2/protr/man/extractPSSMFeature.Rd | 7 - protr-1.4-2/protr/man/extractProtFP.Rd | 1 protr-1.4-2/protr/man/extractProtFPGap.Rd | 1 protr-1.4-2/protr/man/extractQSO.Rd | 7 - protr-1.4-2/protr/man/extractSOCN.Rd | 7 - protr-1.4-2/protr/man/extractScales.Rd | 7 - protr-1.4-2/protr/man/extractScalesGap.Rd | 7 - protr-1.4-2/protr/man/extractTC.Rd | 7 - protr-1.4-2/protr/man/getUniProt.Rd | 7 - protr-1.4-2/protr/man/parGOSim.Rd | 7 - protr-1.4-2/protr/man/parSeqSim.Rd | 7 - protr-1.4-2/protr/man/protcheck.Rd | 1 protr-1.4-2/protr/man/protr-package.Rd | 3 protr-1.4-2/protr/man/protseg.Rd | 1 protr-1.4-2/protr/man/readFASTA.Rd | 7 - protr-1.4-2/protr/man/readPDB.Rd | 7 - protr-1.4-2/protr/man/twoGOSim.Rd | 7 - protr-1.4-2/protr/man/twoSeqSim.Rd | 7 - protr-1.4-2/protr/vignettes/protr.Rmd | 2 protr-1.4-2/protr/vignettes/protr.css | 9 - 87 files changed, 231 insertions(+), 299 deletions(-)
Title: Analysis of Charcoal Records from the Global Charcoal Database
Description: Tools to extract and analyse charcoal sedimentary data stored in
the Global Charcoal Database. Main functionalities includes data extraction
and sites selection, transformation and interpolation of the charcoal
records as well as compositing.
Author: Global Paleofire Working Group <paleofire@univ-fcomte.fr>
Maintainer: Olivier Blarquez <blarquez@gmail.com>
Diff between paleofire versions 1.1.9 dated 2016-10-03 and 1.2.0 dated 2017-09-28
DESCRIPTION | 8 ++--- MD5 | 26 +++++++++-------- NEWS | 7 ++++ R/kdffreq.R | 55 +++++++++++++++++++++++++++++++------- R/pfKruskal.R | 7 +++- R/pfMinMax.R | 3 +- R/pfTransform.R | 4 -- R/pretreatment.R | 19 ++++++++----- build/vignette.rds |binary inst/doc/paleofire-paper.pdf |binary man/kdffreq.Rd | 14 ++++++++- man/plot.CHAR.Rd | 11 ++++++- man/pretreatment.Rd | 4 +- vignettes/paleofire-paper.Rmd |only vignettes/paleofire-paper.nb.html |only 15 files changed, 117 insertions(+), 41 deletions(-)
Title: Benchmarking and Visualization Toolkit for Penalized Cox Models
Description: Creates nomogram visualizations for penalized Cox regression
models, with the support of reproducible survival model building,
validation, calibration, and comparison for high-dimensional data.
Author: Nan Xiao [aut, cre],
Qingsong Xu [aut],
Miaozhu Li [aut]
Maintainer: Nan Xiao <me@nanx.me>
Diff between hdnom versions 4.8 dated 2017-03-25 and 4.9 dated 2017-09-28
hdnom-4.8/hdnom/vignettes/header.html |only hdnom-4.9/hdnom/DESCRIPTION | 9 ++--- hdnom-4.9/hdnom/MD5 | 17 ++++------ hdnom-4.9/hdnom/NEWS.md | 8 ++++ hdnom-4.9/hdnom/README.md | 4 ++ hdnom-4.9/hdnom/build/vignette.rds |binary hdnom-4.9/hdnom/inst/doc/hdnom.Rmd | 2 - hdnom-4.9/hdnom/inst/doc/hdnom.html | 57 ++++++++++++++++------------------ hdnom-4.9/hdnom/vignettes/hdnom.Rmd | 2 - hdnom-4.9/hdnom/vignettes/hdnom.css | 7 ++-- 10 files changed, 57 insertions(+), 49 deletions(-)
Title: Multiple, Unpacking, and Destructuring Assignment
Description: Provides a %<-% operator to perform multiple,
unpacking, and destructuring assignment in R. The
operator unpacks the right-hand side of an assignment
into multiple values and assigns these values to
variables on the left-hand side of the assignment.
Author: Nathan Teetor [aut, cre],
Paul Teetor [ctb]
Maintainer: Nathan Teetor <nathanteetor@gmail.com>
Diff between zeallot versions 0.0.5 dated 2017-08-25 and 0.0.6 dated 2017-09-28
DESCRIPTION | 6 - MD5 | 18 ++--- NEWS.md | 8 ++ R/operator.R | 27 +++++++ R/pair-off.R | 2 R/utils.R | 125 ++++++++++++++++++++++++++++++------- inst/doc/unpacking-assignment.html | 8 +- man/operator.Rd | 8 ++ tests/testthat/test-operator.R | 105 +++++++++++++++++++++++-------- tests/testthat/test-utils.R | 37 +++++++++- 10 files changed, 274 insertions(+), 70 deletions(-)
Title: Econometric Models for Spatial Panel Data
Description: ML and GM estimation and diagnostic testing of econometric models for spatial panel data.
Author: Giovanni Millo [aut, cre],
Gianfranco Piras [aut]
Maintainer: Giovanni Millo <giovanni.millo@generali.com>
Diff between splm versions 1.4-6 dated 2016-11-29 and 1.4-9 dated 2017-09-28
ChangeLog | 3 +++ DESCRIPTION | 12 ++++++------ MD5 | 42 +++++++++++++++++++++--------------------- NAMESPACE | 1 - R/bsjktest.formula.R | 7 +++---- R/bsktest.R | 48 ++++++++++++++++++++++++++++++------------------ R/ivsplm.R | 14 ++++++++++---- R/likelihoodsFE.R | 17 ++++++++++++++--- R/pbsjkARtest.R | 8 ++++---- R/pbsjkJtest.R | 8 ++++---- R/pbsjkREtest.R | 8 ++++---- R/pbsjkSDtest.R | 8 ++++---- R/slag.R | 4 ++-- R/spfeml.R | 14 ++++++++++---- R/spgm.R | 26 +++++++++++++++++++------- R/spreml.R | 6 +++--- data/Insurance.rda |binary data/RiceFarms.rda |binary data/itaww.rda |binary data/riceww.rda |binary data/usaww.rda |binary man/RiceFarms.Rd | 21 +++++++++++++++------ 22 files changed, 152 insertions(+), 95 deletions(-)
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical
measures, which otherwise could only be calculated with additional
effort (like standard errors or root mean squared errors). Second,
these shortcut functions are generic (if appropriate), and can be
applied not only to vectors, but also to other objects as well
(e.g., the Coefficient of Variation can be computed for vectors,
linear models, or linear mixed models; the r2()-function returns
the r-squared value for 'lm', 'glm', 'merMod' or 'lme' objects).
The focus of most functions lies on summary statistics or fit
measures for regression models, including generalized linear
models and mixed effects models. However, some of the functions
also deal with other statistical measures, like Cronbach's Alpha,
Cramer's V, Phi etc.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.11.1 dated 2017-09-16 and 0.11.2 dated 2017-09-28
DESCRIPTION | 21 - MD5 | 112 ++++--- NAMESPACE | 495 +++++++++++++++++------------------ NEWS | 12 NEWS.md | 15 + R/HDI.R | 450 ++++++++++++++++++------------- R/S3-methods.R | 4 R/tidy_stan.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/anova-statistics.R | 66 ++-- inst/doc/anova-statistics.html | 342 ++++++++++++------------ inst/doc/mixedmodels-statistics.R | 130 ++++----- inst/doc/mixedmodels-statistics.html | 494 +++++++++++++++++----------------- man/boot_ci.Rd | 304 ++++++++++----------- man/bootstrap.Rd | 178 ++++++------ man/check_assumptions.Rd | 286 ++++++++++---------- man/chisq_gof.Rd | 118 ++++---- man/cod.Rd | 90 +++--- man/converge_ok.Rd | 132 ++++----- man/cv.Rd | 122 ++++---- man/cv_error.Rd | 104 +++---- man/deff.Rd | 86 +++--- man/efc.Rd | 66 ++-- man/eta_sq.Rd | 108 +++---- man/find_beta.Rd | 212 +++++++------- man/grpmean.Rd | 112 +++---- man/hdi.Rd | 153 +++++----- man/hoslem_gof.Rd | 92 +++--- man/icc.Rd | 254 ++++++++--------- man/inequ_trend.Rd | 140 ++++----- man/mean_n.Rd | 138 ++++----- man/mn.Rd | 72 ++--- man/mwu.Rd | 104 +++---- man/nhanes_sample.Rd | 30 +- man/odds_to_rr.Rd | 154 +++++----- man/overdisp.Rd | 154 +++++----- man/p_value.Rd | 114 ++++---- man/pred_accuracy.Rd | 126 ++++---- man/pred_vars.Rd | 76 ++--- man/prop.Rd | 224 +++++++-------- man/r2.Rd | 242 ++++++++--------- man/re_var.Rd | 136 ++++----- man/reliab_test.Rd | 312 +++++++++++----------- man/rmse.Rd | 152 +++++----- man/robust.Rd | 164 +++++------ man/se.Rd | 276 +++++++++---------- man/se_ybar.Rd | 58 ++-- man/smpsize_lmm.Rd | 136 ++++----- man/std_beta.Rd | 140 ++++----- man/svyglm.nb.Rd | 140 ++++----- man/table_values.Rd | 72 ++--- man/tidy_stan.Rd |only man/typical_value.Rd | 96 +++--- man/var_pop.Rd | 78 ++--- man/weight.Rd | 114 ++++---- man/wtd_sd.Rd | 118 ++++---- man/xtab_statistics.Rd | 220 +++++++-------- 58 files changed, 4229 insertions(+), 4115 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre]
Maintainer: Benjamin Skinner <btskinner@virginia.edu>
Diff between rscorecard versions 0.3.5 dated 2017-01-27 and 0.4.0 dated 2017-09-28
DESCRIPTION | 12 - MD5 | 36 +-- NEWS.md | 10 R/get.R | 2 R/sysdata.rda |binary build/vignette.rds |binary inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 460 +++++++++++++++++++++++++-------------------- man/reexports.Rd | 6 man/rscorecard.Rd | 1 man/sc_dict.Rd | 1 man/sc_filter.Rd | 1 man/sc_get.Rd | 2 man/sc_init.Rd | 1 man/sc_key.Rd | 2 man/sc_select.Rd | 1 man/sc_year.Rd | 2 man/sc_zip.Rd | 1 vignettes/introduction.Rmd | 2 19 files changed, 306 insertions(+), 236 deletions(-)
Title: Potential Impact Fraction and Population Attributable Fraction
for Cross-Sectional Data
Description: Uses a generalized method to estimate the Potential Impact Fraction (PIF) and the Population Attributable Fraction (PAF) from cross-sectional data. It creates point-estimates, confidence intervals, and estimates of variance. In addition it generates plots for conducting sensitivity analysis. The estimation method corresponds to Zepeda-Tello, Camacho-García-Formentí, et al. 2017. 'Nonparametric Methods to Estimate the Potential Impact Fraction from Cross-sectional Data'. Unpublished manuscript. This package was developed under funding by Bloomberg Philanthropies.
Author: Rodrigo Zepeda-Tello [aut, cre],
Dalia Camacho-García-Formentí [aut],
Tonatiuh Barrientos-Gutiérrez [ctb],
Ana Basto-Abreu [ctb],
Ariela Braverman-Bronstein [ctb],
Dèsirée Vidaña-Pérez [ctb],
Frederick Cudhea [ctb],
Instituto Nacional de Salud Pública [cph]
Maintainer: Rodrigo Zepeda-Tello <rzepeda17@gmail.com>
Diff between pifpaf versions 1.0.0 dated 2017-05-31 and 1.0.1 dated 2017-09-28
DESCRIPTION | 10 +++---- MD5 | 32 ++++++++++++------------ R/check_cft.R | 2 - R/counterfactual_plot_discrete.R | 6 ++-- R/paf.R | 4 +-- R/paf_confidence_inverse.R | 8 +++--- R/pif_confidence.R | 2 - R/pif_confidence_loglinear.R | 4 +-- R/pif_variance_approximate_linear.R | 4 +-- R/risk_ratio_confidence.R | 6 ++-- build/vignette.rds |binary man/paf.Rd | 4 +-- man/paf.confidence.inverse.Rd | 8 +++--- man/pif.confidence.Rd | 2 - man/pif.confidence.loglinear.Rd | 4 +-- man/risk.ratio.confidence.Rd | 4 +-- tests/testthat/test_paf_confidence_one_to_one.R | 3 -- 17 files changed, 51 insertions(+), 52 deletions(-)
Title: Generalized Structured Component Analysis (GSCA)
Description: Fit a variety of component-based structural equation models.
Author: Heungsun Hwang, Sunmee Kim, Sungyoung Lee, Taesung Park
Maintainer: Sunmee Kim <sunmee.kim@mail.mcgill.ca>
Diff between gesca versions 1.0.3 dated 2016-07-25 and 1.0.4 dated 2017-09-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/als.mg.ho2.imp.r | 2 +- R/als.mg.ho2.r | 2 +- R/als.mg.imp.r | 2 +- R/als.mg.r | 2 +- 6 files changed, 13 insertions(+), 13 deletions(-)
Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame like objects,
both in memory and out of memory.
Author: Hadley Wickham [aut, cre],
Romain Francois [aut],
Lionel Henry [aut],
Kirill Müller [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dplyr versions 0.7.3 dated 2017-09-09 and 0.7.4 dated 2017-09-28
DESCRIPTION | 6 - MD5 | 20 +++--- NEWS.md | 6 + README.md | 81 ++++++++++++------------- inst/doc/dplyr.html | 20 +++--- inst/doc/programming.html | 4 - inst/doc/two-table.html | 10 +-- inst/include/dplyr/Result/Rank.h | 18 ++--- inst/include/dplyr/Result/VectorSliceVisitor.h | 4 - src/hybrid_nth.cpp | 2 src/join_exports.cpp | 2 11 files changed, 88 insertions(+), 85 deletions(-)
Title: Foreach Parallel Adaptor for the 'parallel' Package
Description: Provides a parallel backend for the %dopar% function using
the parallel package.
Author: Rich Calaway [cre],
Microsoft Corporation [aut, cph],
Steve Weston [aut],
Dan Tenenbaum [ctb]
Maintainer: Rich Calaway <richcala@microsoft.com>
Diff between doParallel versions 1.0.10 dated 2015-10-14 and 1.0.11 dated 2017-09-28
DESCRIPTION | 14 +++++++------- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/gettingstartedParallel.pdf |binary inst/unitTests/options.R | 1 + 5 files changed, 12 insertions(+), 11 deletions(-)
Title: Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for
Phase I Clinical Trials
Description: Statistical methods involving PK measures are provided, in the dose allocation
process during a Phase I clinical trials. These methods enter pharmacokinetics
(PK) in the dose finding designs in different ways, including covariates models,
dependent variable or hierarchical models.
This package provides functions to generate data from several scenarios and functions
to run simulations which their objective is to determine the maximum tolerated dose (MTD).
Author: Artemis Toumazi <artemis.toumazi@inserm.fr>, Moreno Ursino <moreno.ursino@inserm.fr>
and Sarah Zohar <sarah.zohar@inserm.fr>
Maintainer: Artemis Toumazi <artemis.toumazi@inserm.fr>
Diff between dfpk versions 3.3.1 dated 2017-06-30 and 3.3.2 dated 2017-09-28
DESCRIPTION | 13 ++++-- MD5 | 44 +++++++++++------------ R/S4_classes.R | 63 +++++++++++++++++++++++---------- R/dtox.R | 15 +++++-- R/nextDose.R | 23 +++++++----- R/nsim.R | 22 ++++++++--- R/pkcov.R | 14 ++++--- R/pkcrm.R | 17 +++++--- R/pklogit.R | 22 ++++++----- R/pkpop.R | 18 +++++---- R/pktox.R | 21 ++++++----- man/dosefinding-class.Rd | 2 + man/dtox.Rd | 9 +++- man/nextDose.Rd | 8 ++-- man/nsim.Rd | 26 +++++++------ man/pkcov.Rd | 9 +++- man/pkcrm.Rd | 9 +++- man/pklogit.Rd | 7 ++- man/pkpop.Rd | 9 +++- man/pktox.Rd | 9 +++- man/plot-dose-missing-method.Rd | 6 ++- man/plot-dosefinding-missing-method.Rd | 9 +++- man/sim.data.Rd | 2 - 23 files changed, 240 insertions(+), 137 deletions(-)
Title: Retrieval Functions for USGS and EPA Hydrologic and Water
Quality Data
Description: Collection of functions to help retrieve U.S. Geological Survey
(USGS) and U.S. Environmental Protection Agency (EPA) water quality and
hydrology data from web services. USGS web services are discovered from
National Water Information System (NWIS) <https://waterservices.usgs.gov/> and <https://waterdata.usgs.gov/nwis>.
Both EPA and USGS water quality data are obtained from the Water Quality Portal <https://www.waterqualitydata.us/>.
Author: Robert Hirsch [aut],
Laura DeCicco [aut, cre],
David Lorenz [aut],
Jordan Read [ctb],
Jordan Walker [ctb],
Lindsay Carr [ctb],
David Watkins [aut]
Maintainer: Laura DeCicco <ldecicco@usgs.gov>
Diff between dataRetrieval versions 2.7.2 dated 2017-05-23 and 2.7.3 dated 2017-09-28
dataRetrieval-2.7.2/dataRetrieval/tests/testthat/rds |only dataRetrieval-2.7.3/dataRetrieval/DESCRIPTION | 8 dataRetrieval-2.7.3/dataRetrieval/MD5 | 46 ++--- dataRetrieval-2.7.3/dataRetrieval/NAMESPACE | 1 dataRetrieval-2.7.3/dataRetrieval/NEWS | 5 dataRetrieval-2.7.3/dataRetrieval/R/constructNWISURL.r | 2 dataRetrieval-2.7.3/dataRetrieval/R/getWebServiceData.R | 23 ++ dataRetrieval-2.7.3/dataRetrieval/R/importNGWMN_wml2.R | 14 + dataRetrieval-2.7.3/dataRetrieval/R/readNGWMNdata.R | 19 +- dataRetrieval-2.7.3/dataRetrieval/R/readNWISdata.r | 45 ++++- dataRetrieval-2.7.3/dataRetrieval/R/readNWISunit.r | 10 + dataRetrieval-2.7.3/dataRetrieval/R/setAccess.R | 1 dataRetrieval-2.7.3/dataRetrieval/R/whatNWISData.r | 84 ++++------ dataRetrieval-2.7.3/dataRetrieval/R/whatNWISsites.R | 2 dataRetrieval-2.7.3/dataRetrieval/build/vignette.rds |binary dataRetrieval-2.7.3/dataRetrieval/inst/doc/dataRetrieval.html | 16 - dataRetrieval-2.7.3/dataRetrieval/man/readNWISdata.Rd | 18 +- dataRetrieval-2.7.3/dataRetrieval/man/readNWISuv.Rd | 2 dataRetrieval-2.7.3/dataRetrieval/man/whatNWISdata.Rd | 26 --- dataRetrieval-2.7.3/dataRetrieval/tests/testthat/tests_general.R | 66 +++++++ dataRetrieval-2.7.3/dataRetrieval/tests/testthat/tests_userFriendly_fxns.R | 20 +- 21 files changed, 270 insertions(+), 138 deletions(-)
Title: Swarm Intelligence for Self-Organized Clustering
Description: Algorithms implementing populations of agents which interact with one another and sense their environment may exhibit emergent behavior such as self-organization and swarm intelligence. Here a swarm system, called databionic swarm (DBS), is introduced which is able to adapt itself to structures of high-dimensional data such as natural clusters characterized by distance and/or density based structures in the data space. The first module is the parameter-free projection method Pswarm, which exploits the concepts of self-organization and emergence, game theory, swarm intelligence and symmetry considerations. The second module is a parameter-free high-dimensional data visualization technique, which generates projected points on a topographic map with hypsometric colors based on the generalized U-matrix. The third module is the clustering method itself with non-critical parameters. The clustering can be verified by the visualization and vice versa. The term DBS refers to the method as a whole. DBS enables even a non-professional in the field of data mining to apply its algorithms for visualization and/or clustering to data sets with completely different structures drawn from diverse research fields.
Author: Michael Thrun
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DatabionicSwarm versions 0.9.7 dated 2017-08-20 and 0.9.8 dated 2017-09-28
DatabionicSwarm-0.9.7/DatabionicSwarm/R/getUmatrix4Projection.R |only DatabionicSwarm-0.9.7/DatabionicSwarm/R/pswarmCpp.R |only DatabionicSwarm-0.9.7/DatabionicSwarm/man/getUmatrix4Projection.Rd |only DatabionicSwarm-0.9.7/DatabionicSwarm/man/pswarmCpp.Rd |only DatabionicSwarm-0.9.7/DatabionicSwarm/man/setdiffMatrix.Rd |only DatabionicSwarm-0.9.8/DatabionicSwarm/DESCRIPTION | 8 DatabionicSwarm-0.9.8/DatabionicSwarm/MD5 | 73 + DatabionicSwarm-0.9.8/DatabionicSwarm/NAMESPACE | 4 DatabionicSwarm-0.9.8/DatabionicSwarm/R/GeneratePswarmVisualization.R | 3 DatabionicSwarm-0.9.8/DatabionicSwarm/R/Pswarm.R |only DatabionicSwarm-0.9.8/DatabionicSwarm/R/RcppExports.R | 54 - DatabionicSwarm-0.9.8/DatabionicSwarm/R/plotSwarm.R | 109 -- DatabionicSwarm-0.9.8/DatabionicSwarm/R/sESOM4BMUs.R | 209 ++--- DatabionicSwarm-0.9.8/DatabionicSwarm/data/DefaultColorSequence.rda |only DatabionicSwarm-0.9.8/DatabionicSwarm/man/DBSclustering.Rd | 16 DatabionicSwarm-0.9.8/DatabionicSwarm/man/DatabionicSwarm-package.Rd | 29 DatabionicSwarm-0.9.8/DatabionicSwarm/man/DefaultColorSequence.Rd |only DatabionicSwarm-0.9.8/DatabionicSwarm/man/Delaunay4Points.Rd | 16 DatabionicSwarm-0.9.8/DatabionicSwarm/man/Delta3DWeightsC.Rd | 10 DatabionicSwarm-0.9.8/DatabionicSwarm/man/DijkstraSSSP.Rd | 3 DatabionicSwarm-0.9.8/DatabionicSwarm/man/GeneratePswarmVisualization.Rd | 22 DatabionicSwarm-0.9.8/DatabionicSwarm/man/ProjectedPoints2Grid.Rd | 4 DatabionicSwarm-0.9.8/DatabionicSwarm/man/Pswarm.Rd |only DatabionicSwarm-0.9.8/DatabionicSwarm/man/PswarmCurrentRadiusC2botsPositive.Rd | 2 DatabionicSwarm-0.9.8/DatabionicSwarm/man/findPossiblePositionsCsingle.Rd | 4 DatabionicSwarm-0.9.8/DatabionicSwarm/man/getCartesianCoordinates.Rd | 17 DatabionicSwarm-0.9.8/DatabionicSwarm/man/plotSwarm.rd | 9 DatabionicSwarm-0.9.8/DatabionicSwarm/man/rDistanceToroidCsingle.Rd | 4 DatabionicSwarm-0.9.8/DatabionicSwarm/man/sESOM4BMUs.Rd | 8 DatabionicSwarm-0.9.8/DatabionicSwarm/man/setGridSize.Rd | 8 DatabionicSwarm-0.9.8/DatabionicSwarm/man/setPolarGrid.Rd | 6 DatabionicSwarm-0.9.8/DatabionicSwarm/man/setRmin.Rd | 9 DatabionicSwarm-0.9.8/DatabionicSwarm/man/trainstepC.Rd | 6 DatabionicSwarm-0.9.8/DatabionicSwarm/src/DataBionicSwarm.h |only DatabionicSwarm-0.9.8/DatabionicSwarm/src/DatabionicSwarm_init.c |only DatabionicSwarm-0.9.8/DatabionicSwarm/src/Delta3DWeightsC.cpp | 30 DatabionicSwarm-0.9.8/DatabionicSwarm/src/PswarmCurrentRadiusC2botsPositive.cpp | 384 ++++------ DatabionicSwarm-0.9.8/DatabionicSwarm/src/RcppExports.cpp | 19 DatabionicSwarm-0.9.8/DatabionicSwarm/src/calcPolarPositionsC.cpp |only DatabionicSwarm-0.9.8/DatabionicSwarm/src/calcStressC.cpp |only DatabionicSwarm-0.9.8/DatabionicSwarm/src/findPossiblePositionsCsingle.cpp | 1 DatabionicSwarm-0.9.8/DatabionicSwarm/src/lmC.cpp |only DatabionicSwarm-0.9.8/DatabionicSwarm/src/makePolarPositionToroidC.cpp |only DatabionicSwarm-0.9.8/DatabionicSwarm/src/rDistanceToroidCsingle.cpp | 3 DatabionicSwarm-0.9.8/DatabionicSwarm/src/trainstepC.cpp | 126 +-- 45 files changed, 535 insertions(+), 661 deletions(-)
More information about DatabionicSwarm at CRAN
Permanent link
Title: Tools for Ecological Network Analysis
Description: Provides algorithms for the analysis of ecological networks.
Author: M.K. Lau, S.R. Borrett, D.E. Hines, P. Singh
Maintainer: Matthew K. Lau <enaR.maintainer@gmail.com>
Diff between enaR versions 2.10.0 dated 2017-03-12 and 3.0.0 dated 2017-09-28
CHANGELOG | 36 +++----- DESCRIPTION | 11 +- MD5 | 188 ++++++++++++++++++++++---------------------- NAMESPACE | 3 R/EcoNetWeb.R | 2 R/ShannonDiversity.R | 35 -------- R/TES.R | 35 -------- R/TET.R | 29 ------ R/as.bipartite.R | 38 +------- R/as.extended.R | 39 --------- R/bal.R | 22 ----- R/cycliv.R | 65 ++++++--------- R/eigenCentrality.R | 4 R/enaAll.R | 23 ----- R/enaAscendency.R | 38 +------- R/enaControl.R | 21 ---- R/enaCycle.R | 62 +++++--------- R/enaEnviron.R | 25 ----- R/enaFlow.R | 26 +----- R/enaMTI.R | 111 +++++++++---------------- R/enaStorage.R | 24 ----- R/enaStructure.R | 27 ------ R/enaTroAgg.R | 26 ++++-- R/enaUncertainty.R |only R/enaUtility.R | 182 +++++++++++++++--------------------------- R/environCentrality.R | 22 ----- R/findPathLength.R | 22 ----- R/force.balance.R | 22 ----- R/get.ns.R | 35 +------- R/get.orient.R | 33 +------ R/mExp.R | 30 ------- R/meanTrophicLevel.r |only R/netOrder.R | 44 +++------- R/pack.R | 34 +++---- R/read.EcoNet.R | 3 R/read.enam.R | 42 +++------ R/read.nea.R | 31 ------- R/read.scor.R | 62 +++++--------- R/read.wand.R | 31 +------ R/scc.R | 25 ----- R/scifix.R | 23 ----- R/set.orient.R | 57 +++---------- R/ssCheck.R | 39 --------- R/structure.statistics.R | 30 ------- R/unpack.R | 34 +------ R/write.EcoNet.R | 10 -- R/write.nea.R | 30 ------- build/vignette.rds |binary data/bgcModels.rda |binary data/enaModelInfo.rda |binary data/enaModels.rda |binary data/oyster.rda |binary data/troModels.rda |binary inst/doc/enaR-vignette.pdf |binary man/EcoNetWeb.Rd | 3 man/ShannonDiversity.Rd | 29 ------ man/TES.Rd | 28 ------ man/TET.Rd | 23 ----- man/as.bipartite.Rd | 36 ++------ man/as.extended.Rd | 33 ------- man/bal.Rd | 17 --- man/cycliv.Rd | 66 +++++++-------- man/eigenCentrality.Rd | 4 man/enaAll.Rd | 17 --- man/enaAscendency.Rd | 30 +------ man/enaControl.Rd | 16 --- man/enaCycle.Rd | 48 ++++------- man/enaEnviron.Rd | 19 ---- man/enaFlow.Rd | 26 +----- man/enaMTI.Rd | 32 ------- man/enaStorage.Rd | 17 --- man/enaStructure.Rd | 21 ---- man/enaTroAgg.Rd | 20 ++-- man/enaUncertainty.Rd |only man/enaUtility.Rd | 57 ++----------- man/environCentrality.Rd | 18 ---- man/findPathLength.Rd | 19 ---- man/force.balance.Rd | 14 --- man/get.ns.Rd | 25 +---- man/get.orient.Rd | 27 +----- man/mExp.Rd | 24 ----- man/meanTrophicLevel.Rd |only man/netOrder.Rd | 46 ++++------ man/pack.Rd | 4 man/read.EcoNet.Rd | 3 man/read.enam.Rd | 37 +++----- man/read.nea.Rd | 25 ----- man/read.scor.Rd | 52 +++++------- man/read.wand.Rd | 23 +---- man/scc.Rd | 17 --- man/scifix.Rd | 15 --- man/set.orient.Rd | 53 ++++-------- man/ssCheck.Rd | 31 ------- man/structure.statistics.Rd | 22 ----- man/unpack.Rd | 26 +----- man/write.EcoNet.Rd | 8 - man/write.nea.Rd | 23 ----- 97 files changed, 702 insertions(+), 2083 deletions(-)
Title: Multiple Change-Point Detection and Segmentation
Description: The breakfast package performs multiple change-point detection in data
sequences, or sequence segmentation, using computationally efficient multiscale
methods. This version of the package implements the "Tail-Greedy Unbalanced Haar",
"Wild Binary Segmentation" and "Adaptive Wild Binary Segmentation" change-point
detection and segmentation methodologies. To start with, see the function
segment.mean.
Author: Piotr Fryzlewicz [aut, cre]
Maintainer: Piotr Fryzlewicz <p.fryzlewicz@lse.ac.uk>
Diff between breakfast versions 0.1.0 dated 2017-05-26 and 1.0.0 dated 2017-09-28
DESCRIPTION | 15 +-- MD5 | 28 ++++-- NAMESPACE | 7 + R/breakfast.R | 8 + R/hybrid_cpt.R |only R/segment_mean.R | 54 +++++-------- R/tguh_cpt.R | 4 R/utils.R | 205 +++++++++++++++++++++++++++++++++++++++++++------- R/wbs_K_cpt.R |only R/wbs_bic_cpt.R |only R/wbs_cpt.R |only R/wbs_thresh_cpt.R |only man/breakfast.Rd | 8 + man/hybrid.cpt.Rd |only man/segment.mean.Rd | 60 ++++++-------- man/tguh.cpt.Rd | 2 man/wbs.K.cpt.Rd |only man/wbs.bic.cpt.Rd |only man/wbs.cpt.Rd |only man/wbs.thresh.cpt.Rd |only 20 files changed, 274 insertions(+), 117 deletions(-)
Title: Post-Processing of the Markov Chain Simulated by 'ChronoModel',
'Oxcal' or 'BCal'
Description: Provides a list of functions for the statistical analysis of archaeological dates and groups of dates. It is based on the post-processing of the Markov Chains whose stationary distribution is the posterior distribution of a series of dates. Such output can be simulated by different applications as for instance 'ChronoModel' (see <http://www.chronomodel.fr>), 'Oxcal' (see <https://c14.arch.ox.ac.uk/oxcal.html>) or 'BCal' (see <http://bcal.shef.ac.uk/>). The only requirement is to have a csv file containing a sample from the posterior distribution.
Author: Anne Philippe [aut, cre],
Marie-Anne Vibet [aut],
Thomas S. Dye [ctb]
Maintainer: Anne Philippe <anne.philippe@univ-nantes.fr>
Diff between ArchaeoPhases versions 1.2 dated 2017-06-13 and 1.3 dated 2017-09-28
ArchaeoPhases-1.2/ArchaeoPhases/R/prog.R |only ArchaeoPhases-1.2/ArchaeoPhases/inst/doc/ArchaeoPhases.R |only ArchaeoPhases-1.2/ArchaeoPhases/inst/doc/ArchaeoPhases.Rmd |only ArchaeoPhases-1.2/ArchaeoPhases/inst/doc/ArchaeoPhases.html |only ArchaeoPhases-1.2/ArchaeoPhases/vignettes/ArchaeoPhases.Rmd |only ArchaeoPhases-1.3/ArchaeoPhases/DESCRIPTION | 19 +-- ArchaeoPhases-1.3/ArchaeoPhases/MD5 | 72 +++++++++--- ArchaeoPhases-1.3/ArchaeoPhases/NAMESPACE | 7 - ArchaeoPhases-1.3/ArchaeoPhases/NEWS | 18 +++ ArchaeoPhases-1.3/ArchaeoPhases/R/CreateMinMaxGroup.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/CredibleInterval.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/DatesHiatus.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/ImportCSV.BCal.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/ImportCSV.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MarginalPlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MarginalProba.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MarginalStatistics.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MultiCredibleInterval.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MultiDatesPlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MultiHPD.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MultiPhasePlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MultiPhaseTimeRange.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MultiPhasesGap.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MultiPhasesTransition.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/MultiSuccessionPlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/OccurrencePlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/PhaseDurationPlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/PhasePlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/PhaseStatistics.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/PhaseTimeRange.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/PhasesGap.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/PhasesTransition.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/SuccessionPlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/TempoActivityPlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/TempoPlot.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/app_ArchaeoPhases.R |only ArchaeoPhases-1.3/ArchaeoPhases/R/coda.mcmc.R |only ArchaeoPhases-1.3/ArchaeoPhases/README |only ArchaeoPhases-1.3/ArchaeoPhases/build/vignette.rds |binary ArchaeoPhases-1.3/ArchaeoPhases/inst/doc/GroupsOfDates.R |only ArchaeoPhases-1.3/ArchaeoPhases/inst/doc/GroupsOfDates.Rmd |only ArchaeoPhases-1.3/ArchaeoPhases/inst/doc/GroupsOfDates.html |only ArchaeoPhases-1.3/ArchaeoPhases/inst/doc/Introduction.R |only ArchaeoPhases-1.3/ArchaeoPhases/inst/doc/Introduction.Rmd |only ArchaeoPhases-1.3/ArchaeoPhases/inst/doc/Introduction.html |only ArchaeoPhases-1.3/ArchaeoPhases/inst/doc/SeriesOfDates.R |only ArchaeoPhases-1.3/ArchaeoPhases/inst/doc/SeriesOfDates.Rmd |only ArchaeoPhases-1.3/ArchaeoPhases/inst/doc/SeriesOfDates.html |only ArchaeoPhases-1.3/ArchaeoPhases/inst/shiny/server.R | 57 +++++++-- ArchaeoPhases-1.3/ArchaeoPhases/inst/shiny/ui.R | 39 ++++-- ArchaeoPhases-1.3/ArchaeoPhases/man/ImportCSV.BCal.Rd |only ArchaeoPhases-1.3/ArchaeoPhases/man/ImportCSV.Rd | 13 +- ArchaeoPhases-1.3/ArchaeoPhases/man/MultiDatesPlot.Rd | 43 +++++-- ArchaeoPhases-1.3/ArchaeoPhases/man/MultiHPD.Rd | 7 - ArchaeoPhases-1.3/ArchaeoPhases/man/OccurrencePlot.Rd |only ArchaeoPhases-1.3/ArchaeoPhases/man/PhaseStatistics.Rd | 2 ArchaeoPhases-1.3/ArchaeoPhases/man/TempoActivityPlot.Rd | 45 +++++-- ArchaeoPhases-1.3/ArchaeoPhases/man/TempoPlot.Rd | 50 ++++++-- ArchaeoPhases-1.3/ArchaeoPhases/vignettes/GroupsOfDates.Rmd |only ArchaeoPhases-1.3/ArchaeoPhases/vignettes/Introduction.Rmd |only ArchaeoPhases-1.3/ArchaeoPhases/vignettes/SeriesOfDates.Rmd |only 61 files changed, 271 insertions(+), 101 deletions(-)
Title: Spatial and Spatiotemporal Relative Risk
Description: Provides functions to estimate kernel-smoothed spatial and spatio-temporal densities and relative risk functions, and perform subsequent inference.
Author: T.M. Davies and J.C. Marshall
Maintainer: Tilman M. Davies <tdavies@maths.otago.ac.nz>
Diff between sparr versions 2.1-12 dated 2017-08-27 and 2.1-13 dated 2017-09-28
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 8 ++++++++ R/package.R | 4 ++-- R/zzz.R | 2 +- man/sparr-package.Rd | 8 ++++---- 6 files changed, 24 insertions(+), 16 deletions(-)
Title: Retrieve Data from MacLeish Field Station
Description: Download data from the Ada and Archibald MacLeish Field
Station in Whately, MA. The Ada
and Archibald MacLeish Field Station is a 260-acre patchwork of
forest and farmland located in West Whately, MA that provides opportunities
for faculty and students to pursue environmental research, outdoor
education, and low-impact recreation
(see <http://www.smith.edu/ceeds/macleish.php> for more information).
This package contains
weather data over several years, and spatial data on various man-made and
natural structures.
Author: Benjamin S. Baumer [aut, cre],
Rose Goueth [aut],
Wencong Li [aut],
Weijia Zhang [aut],
Nicholas Horton [aut]
Maintainer: Benjamin S. Baumer <ben.baumer@gmail.com>
Diff between macleish versions 0.3.0 dated 2016-06-13 and 0.3.1 dated 2017-09-28
macleish-0.3.0/macleish/inst/CITATION |only macleish-0.3.1/macleish/DESCRIPTION | 29 +-- macleish-0.3.1/macleish/MD5 | 32 ++- macleish-0.3.1/macleish/NAMESPACE | 11 - macleish-0.3.1/macleish/NEWS.md | 11 + macleish-0.3.1/macleish/R/data.R | 17 +- macleish-0.3.1/macleish/R/etl_extract.R | 29 --- macleish-0.3.1/macleish/R/mass_gis.R |only macleish-0.3.1/macleish/README.md | 39 ++-- macleish-0.3.1/macleish/build/vignette.rds |binary macleish-0.3.1/macleish/data/maple_sap.rda |only macleish-0.3.1/macleish/inst/doc/macleish.Rmd | 4 macleish-0.3.1/macleish/inst/doc/macleish.html | 130 +++++++--------- macleish-0.3.1/macleish/inst/sql |only macleish-0.3.1/macleish/man/etl_extract.etl_macleish.Rd | 4 macleish-0.3.1/macleish/man/macleish_layers.Rd | 1 macleish-0.3.1/macleish/man/maple_sap.Rd |only macleish-0.3.1/macleish/man/mass_gis.Rd |only macleish-0.3.1/macleish/man/whately_2015.Rd | 7 macleish-0.3.1/macleish/vignettes/macleish.Rmd | 4 20 files changed, 155 insertions(+), 163 deletions(-)
Title: Client for 'jq', a 'JSON' Processor
Description: Client for 'jq', a 'JSON' processor (<https://stedolan.github.io/jq/>),
written in C. 'jq' allows the following with 'JSON' data: index into, parse,
do calculations, cut up and filter, change key names and values, perform
conditionals and comparisons, and more.
Author: Rich FitzJohn [aut],
Jeroen Ooms [aut],
Scott Chamberlain [aut, cre],
Stefan Milton Bache [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between jqr versions 0.2.4 dated 2016-07-29 and 1.0.0 dated 2017-09-28
jqr-0.2.4/jqr/R/RcppExports.R |only jqr-0.2.4/jqr/data/githubcommits.rda |only jqr-0.2.4/jqr/man/githubcommits.Rd |only jqr-0.2.4/jqr/src/Makevars |only jqr-0.2.4/jqr/src/RcppExports.cpp |only jqr-0.2.4/jqr/src/endianfix.h |only jqr-0.2.4/jqr/src/jq |only jqr-0.2.4/jqr/src/jqr.cpp |only jqr-1.0.0/jqr/DESCRIPTION | 46 ++----- jqr-1.0.0/jqr/LICENSE | 2 jqr-1.0.0/jqr/MD5 | 146 +++++++++--------------- jqr-1.0.0/jqr/NAMESPACE | 3 jqr-1.0.0/jqr/NEWS.md | 12 ++ jqr-1.0.0/jqr/R/at.R | 2 jqr-1.0.0/jqr/R/combine.R | 2 jqr-1.0.0/jqr/R/dot.R | 2 jqr-1.0.0/jqr/R/index.R | 29 ++-- jqr-1.0.0/jqr/R/jqr-package.R | 24 +++- jqr-1.0.0/jqr/R/jqr.R | 33 ++++- jqr-1.0.0/jqr/R/keys.R | 14 +- jqr-1.0.0/jqr/R/logicaltests.R | 4 jqr-1.0.0/jqr/R/manip.R | 6 + jqr-1.0.0/jqr/R/maths.R | 22 +++ jqr-1.0.0/jqr/R/range.R | 5 jqr-1.0.0/jqr/R/select.R | 8 + jqr-1.0.0/jqr/R/sort.R | 14 +- jqr-1.0.0/jqr/R/zzz.R | 4 jqr-1.0.0/jqr/README.md | 185 ++++++++++++++++++++++++++++--- jqr-1.0.0/jqr/build/vignette.rds |binary jqr-1.0.0/jqr/cleanup |only jqr-1.0.0/jqr/configure |only jqr-1.0.0/jqr/data/commits.rda |only jqr-1.0.0/jqr/inst/doc/jqr_vignette.R | 2 jqr-1.0.0/jqr/inst/doc/jqr_vignette.Rmd | 4 jqr-1.0.0/jqr/inst/doc/jqr_vignette.html | 4 jqr-1.0.0/jqr/man/at.Rd | 3 jqr-1.0.0/jqr/man/combine.Rd | 3 jqr-1.0.0/jqr/man/commits.Rd |only jqr-1.0.0/jqr/man/dot.Rd | 1 jqr-1.0.0/jqr/man/funs.Rd | 1 jqr-1.0.0/jqr/man/index.Rd | 27 ++-- jqr-1.0.0/jqr/man/jq.Rd | 21 ++- jqr-1.0.0/jqr/man/jq_flags.Rd | 3 jqr-1.0.0/jqr/man/jqr.Rd | 25 +++- jqr-1.0.0/jqr/man/keys.Rd | 12 +- jqr-1.0.0/jqr/man/logicaltests.Rd | 7 - jqr-1.0.0/jqr/man/manip.Rd | 41 +++--- jqr-1.0.0/jqr/man/maths.Rd | 35 ++++- jqr-1.0.0/jqr/man/paths.Rd | 1 jqr-1.0.0/jqr/man/peek.Rd | 1 jqr-1.0.0/jqr/man/pipe.Rd | 1 jqr-1.0.0/jqr/man/rangej.Rd | 6 - jqr-1.0.0/jqr/man/recurse.Rd | 1 jqr-1.0.0/jqr/man/select.Rd | 9 + jqr-1.0.0/jqr/man/sortj.Rd | 13 +- jqr-1.0.0/jqr/man/string.Rd | 1 jqr-1.0.0/jqr/man/types.Rd | 3 jqr-1.0.0/jqr/man/vars.Rd | 1 jqr-1.0.0/jqr/src/Makevars.in |only jqr-1.0.0/jqr/src/Makevars.win |only jqr-1.0.0/jqr/src/jqr.c |only jqr-1.0.0/jqr/src/register.c |only jqr-1.0.0/jqr/tests/testthat/test-dsl.R | 5 jqr-1.0.0/jqr/tools |only jqr-1.0.0/jqr/vignettes/jqr_vignette.Rmd | 4 65 files changed, 526 insertions(+), 272 deletions(-)
Title: Check if an 'externalptr' is a Null Pointer
Description: Check if an 'externalptr' is a null pointer.
R does currently not have a native function for that purpose.
This package contains a C function that returns TRUE in case of a null pointer.
Author: Jonas Förster [aut, cre]
Maintainer: Jonas Förster <jonasfoerster@gmail.com>
Diff between isnullptr versions 1.0.0 dated 2017-09-25 and 1.0.1 dated 2017-09-28
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NAMESPACE | 8 ++++---- man/isnullptr.Rd | 42 +++++++++++++++++++++--------------------- src/isnullptr.c | 1 + 5 files changed, 33 insertions(+), 32 deletions(-)
Title: Calculate Cluster-Robust p-Values and Confidence Intervals
Description: Calculate p-values and confidence intervals using cluster-adjusted
t-statistics (based on Ibragimov and Muller (2010) <DOI:10.1198/jbes.2009.08046>, pairs cluster bootstrapped t-statistics, and wild cluster bootstrapped t-statistics (the latter two techniques based on Cameron, Gelbach, and Miller (2008) <DOI:10.1162/rest.90.3.414>. Procedures are included for use with GLM, ivreg, plm (pooling or fixed effects), and mlogit models.
Author: Justin Esarey [aut, cre]
Maintainer: Justin Esarey <justin@justinesarey.com>
Diff between clusterSEs versions 2.4 dated 2017-05-20 and 2.4.1 dated 2017-09-28
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/clusterIM.glm.R | 2 +- R/clusterIM.ivreg.R | 2 +- R/clusterIM.mlogit.R | 2 +- man/cluster.im.glm.Rd | 2 +- man/cluster.im.ivreg.Rd | 2 +- man/cluster.im.mlogit.Rd | 2 +- 8 files changed, 16 insertions(+), 16 deletions(-)
Title: The q-Gaussian Distribution
Description: Density, distribution function, quantile function and
random generation for the q-gaussian distribution with parameters mu and sig.
Author: Emerson Luis de Santa Helena <elsh@ufs.br>
Wagner Santos de Lima <wagnersantos.ufs@hotmail.com>
Maintainer: Wagner Santos de Lima <wagnersantos.ufs@hotmail.com>
Diff between qGaussian versions 0.1.4 dated 2017-03-08 and 0.1.6 dated 2017-09-28
qGaussian-0.1.4/qGaussian/R/cqgauss_0.1.4.R |only qGaussian-0.1.4/qGaussian/R/dqgauss_0.1.4.R |only qGaussian-0.1.4/qGaussian/R/pqgauss_0.1.4.R |only qGaussian-0.1.4/qGaussian/R/qbymc_0.1.4.R |only qGaussian-0.1.4/qGaussian/R/rqgauss_0.1.4.R |only qGaussian-0.1.6/qGaussian/DESCRIPTION | 18 ++++++++++-------- qGaussian-0.1.6/qGaussian/MD5 | 21 +++++++++++++-------- qGaussian-0.1.6/qGaussian/NAMESPACE | 5 +++-- qGaussian-0.1.6/qGaussian/R/RcppExports.R |only qGaussian-0.1.6/qGaussian/R/cqgauss_0.1.5.R |only qGaussian-0.1.6/qGaussian/R/dqgauss_0.1.5.R |only qGaussian-0.1.6/qGaussian/R/pqgauss_0.1.5.R |only qGaussian-0.1.6/qGaussian/R/qbymc_0.1.5.R |only qGaussian-0.1.6/qGaussian/R/rqgauss_0.1.5.R |only qGaussian-0.1.6/qGaussian/man/chaotic.Rd |only qGaussian-0.1.6/qGaussian/man/rqgauss.Rd | 11 ++++++++--- qGaussian-0.1.6/qGaussian/src |only 17 files changed, 34 insertions(+), 21 deletions(-)
Title: Replicability Analysis for Multiple Studies of High Dimension
Description: Estimation of Bayes and local Bayes false discovery rates for
replicability analysis (Heller & Yekutieli, 2014 <doi:10.1214/13-AOAS697> ;
Heller at al., 2015 <doi: 10.1093/bioinformatics/btu434>).
Author: Ruth Heller [cre, aut],
Shachar Kaufman [aut],
Shay Yaacoby [aut],
David Israeli [aut],
Barak Brill [aut],
Daniel Yekutieli [aut],
Stephen Turner [cph]
Maintainer: Ruth Heller <ruheller@gmail.com>
Diff between repfdr versions 1.1-3 dated 2015-04-06 and 1.2.3 dated 2017-09-28
repfdr-1.1-3/repfdr/data/binned_zmat.RData |only repfdr-1.2.3/repfdr/DESCRIPTION | 28 - repfdr-1.2.3/repfdr/MD5 | 44 + repfdr-1.2.3/repfdr/NAMESPACE | 10 repfdr-1.2.3/repfdr/R/RcppExports.R |only repfdr-1.2.3/repfdr/R/repfdr.R | 123 ++++- repfdr-1.2.3/repfdr/R/repfdr_clusters.R |only repfdr-1.2.3/repfdr/R/ztobins.R | 536 ++++++++++++++++++----- repfdr-1.2.3/repfdr/README.md | 18 repfdr-1.2.3/repfdr/build |only repfdr-1.2.3/repfdr/data/datalist | 1 repfdr-1.2.3/repfdr/inst |only repfdr-1.2.3/repfdr/man/binned_zmat.Rd | 58 +- repfdr-1.2.3/repfdr/man/em.control.Rd | 96 ++-- repfdr-1.2.3/repfdr/man/ldr.Rd | 119 ++--- repfdr-1.2.3/repfdr/man/piem.Rd | 130 ++--- repfdr-1.2.3/repfdr/man/repfdr.Rd | 383 ++++++++++------ repfdr-1.2.3/repfdr/man/twosidedPValuestobins.Rd |only repfdr-1.2.3/repfdr/man/zmat_sim.Rd | 2 repfdr-1.2.3/repfdr/man/ztobins.Rd | 223 ++++++--- repfdr-1.2.3/repfdr/src/REM.c | 5 repfdr-1.2.3/repfdr/src/RcppExports.cpp |only repfdr-1.2.3/repfdr/src/init.c |only repfdr-1.2.3/repfdr/src/rcpp_main.cpp |only repfdr-1.2.3/repfdr/vignettes |only 25 files changed, 1225 insertions(+), 551 deletions(-)
Title: Bi-Directional Interface Between 'R' and 'Scala' with Callbacks
Description: The 'Scala' <http://www.scala-lang.org/> interpreter is embedded in 'R' and callbacks to 'R' from the embedded interpreter are supported. Conversely, the 'R' interpreter is embedded in 'Scala'. 'Scala' versions in the 2.10.x, 2.11.x, and 2.12.x series are supported.
Author: David B. Dahl [aut, cre]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between rscala versions 2.3.5 dated 2017-08-30 and 2.4.0 dated 2017-09-28
rscala-2.3.5/rscala/inst/java/scala-2.10/rscala_2.10-2.3.5.jar |only rscala-2.3.5/rscala/inst/java/scala-2.11/rscala_2.11-2.3.5.jar |only rscala-2.3.5/rscala/inst/java/scala-2.12/rscala_2.12-2.3.5.jar |only rscala-2.4.0/rscala/DESCRIPTION | 8 rscala-2.4.0/rscala/MD5 | 47 - rscala-2.4.0/rscala/NAMESPACE | 8 rscala-2.4.0/rscala/NEWS | 11 rscala-2.4.0/rscala/R/common.R | 6 rscala-2.4.0/rscala/R/protocol.R | 3 rscala-2.4.0/rscala/R/rServer.R | 22 rscala-2.4.0/rscala/R/scala.R | 392 +++------- rscala-2.4.0/rscala/R/scalaInstall.R |only rscala-2.4.0/rscala/README | 18 rscala-2.4.0/rscala/inst/README | 18 rscala-2.4.0/rscala/inst/doc/article.R | 8 rscala-2.4.0/rscala/inst/doc/article.Rnw | 72 + rscala-2.4.0/rscala/inst/doc/article.pdf |binary rscala-2.4.0/rscala/inst/java/scala-2.10/rscala_2.10-2.4.0.jar |only rscala-2.4.0/rscala/inst/java/scala-2.11/rscala_2.11-2.4.0.jar |only rscala-2.4.0/rscala/inst/java/scala-2.12/rscala_2.12-2.4.0.jar |only rscala-2.4.0/rscala/java/rscala-sources.jar |binary rscala-2.4.0/rscala/man/constructor.Rd | 13 rscala-2.4.0/rscala/man/eval.Rd | 11 rscala-2.4.0/rscala/man/print.Rd | 1 rscala-2.4.0/rscala/man/settings.Rd | 3 rscala-2.4.0/rscala/vignettes/article.Rnw | 72 + rscala-2.4.0/rscala/vignettes/refs.bib | 16 rscala-2.4.0/rscala/vignettes/screenshot.png |binary 28 files changed, 330 insertions(+), 399 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, JSS), the book by Eddelbuettel (2013, Springer) and the paper
by Eddelbuettel and Balamuta (2017, PeerJ); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 0.12.12 dated 2017-07-15 and 0.12.13 dated 2017-09-28
Rcpp-0.12.12/Rcpp/inst/doc/Rcpp-FAQ.Rnw |only Rcpp-0.12.12/Rcpp/inst/doc/Rcpp-attributes.Rnw |only Rcpp-0.12.12/Rcpp/inst/doc/Rcpp-extending.Rnw |only Rcpp-0.12.12/Rcpp/inst/doc/Rcpp-introduction.Rnw |only Rcpp-0.12.12/Rcpp/inst/doc/Rcpp-modules.Rnw |only Rcpp-0.12.12/Rcpp/inst/doc/Rcpp-package.R |only Rcpp-0.12.12/Rcpp/inst/doc/Rcpp-package.Rnw |only Rcpp-0.12.12/Rcpp/inst/doc/Rcpp-quickref.Rnw |only Rcpp-0.12.12/Rcpp/inst/doc/Rcpp-sugar.Rnw |only Rcpp-0.12.12/Rcpp/vignettes/Rcpp-FAQ.Rnw |only Rcpp-0.12.12/Rcpp/vignettes/Rcpp-attributes.Rnw |only Rcpp-0.12.12/Rcpp/vignettes/Rcpp-extending.Rnw |only Rcpp-0.12.12/Rcpp/vignettes/Rcpp-introduction.Rnw |only Rcpp-0.12.12/Rcpp/vignettes/Rcpp-modules.Rnw |only Rcpp-0.12.12/Rcpp/vignettes/Rcpp-package.Rnw |only Rcpp-0.12.12/Rcpp/vignettes/Rcpp-quickref.Rnw |only Rcpp-0.12.12/Rcpp/vignettes/Rcpp-sugar.Rnw |only Rcpp-0.12.13/Rcpp/ChangeLog | 118 +++ Rcpp-0.12.13/Rcpp/DESCRIPTION | 19 Rcpp-0.12.13/Rcpp/MD5 | 106 +- Rcpp-0.12.13/Rcpp/R/Attributes.R | 2 Rcpp-0.12.13/Rcpp/build/Rcpp.pdf |binary Rcpp-0.12.13/Rcpp/build/vignette.rds |binary Rcpp-0.12.13/Rcpp/cleanup | 2 Rcpp-0.12.13/Rcpp/inst/NEWS.Rd | 29 Rcpp-0.12.13/Rcpp/inst/bib/Rcpp.bib | 494 ++++++++---- Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-FAQ.R | 534 ++++++-------- Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-FAQ.Rmd |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-FAQ.pdf |binary Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-attributes.R | 112 +- Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-attributes.Rmd |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-attributes.pdf |binary Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-extending.R | 59 - Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-extending.Rmd |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-extending.pdf |binary Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-introduction.R | 120 ++- Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-introduction.Rmd |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-introduction.pdf |binary Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-jss-2011.R |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-jss-2011.Rnw |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-jss-2011.pdf |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-modules.R | 404 ++++------ Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-modules.Rmd |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-modules.pdf |binary Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-package.Rmd |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-package.pdf |binary Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-quickref.R | 59 + Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-quickref.Rmd |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-quickref.pdf |binary Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-sugar.R | 20 Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-sugar.Rmd |only Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-sugar.pdf |binary Rcpp-0.12.13/Rcpp/inst/doc/Rcpp-unitTests.pdf |binary Rcpp-0.12.13/Rcpp/inst/doc/Rcpp.bib |only Rcpp-0.12.13/Rcpp/inst/include/Rcpp/Module.h | 4 Rcpp-0.12.13/Rcpp/inst/include/Rcpp/XPtr.h | 83 +- Rcpp-0.12.13/Rcpp/inst/include/Rcpp/vector/Matrix.h | 2 Rcpp-0.12.13/Rcpp/inst/include/Rcpp/vector/MatrixColumn.h | 30 Rcpp-0.12.13/Rcpp/inst/include/Rcpp/vector/Vector.h | 2 Rcpp-0.12.13/Rcpp/inst/include/Rcpp/vector/VectorBase.h | 78 +- Rcpp-0.12.13/Rcpp/inst/include/Rcpp/vector/traits.h | 30 Rcpp-0.12.13/Rcpp/man/cppFunction.Rd | 2 Rcpp-0.12.13/Rcpp/vignettes/Rcpp-FAQ.Rmd |only Rcpp-0.12.13/Rcpp/vignettes/Rcpp-attributes.Rmd |only Rcpp-0.12.13/Rcpp/vignettes/Rcpp-extending.Rmd |only Rcpp-0.12.13/Rcpp/vignettes/Rcpp-introduction.Rmd |only Rcpp-0.12.13/Rcpp/vignettes/Rcpp-jss-2011.Rnw |only Rcpp-0.12.13/Rcpp/vignettes/Rcpp-modules.Rmd |only Rcpp-0.12.13/Rcpp/vignettes/Rcpp-package.Rmd |only Rcpp-0.12.13/Rcpp/vignettes/Rcpp-quickref.Rmd |only Rcpp-0.12.13/Rcpp/vignettes/Rcpp-sugar.Rmd |only Rcpp-0.12.13/Rcpp/vignettes/Rcpp.bib |only Rcpp-0.12.13/Rcpp/vignettes/figures |only 73 files changed, 1320 insertions(+), 989 deletions(-)
Title: Morphometrics using R
Description: A complete toolkit for morphometrics, from
data extraction to multivariate analyses. Most
common 2D morphometrics approaches are included:
outlines, open outlines, configurations of
landmarks, traditional morphometrics, and
facilities for data preparation, manipulation and
visualization with a consistent grammar throughout.
Momocs allows reproducible, complex morphometric
analyses, paves the way for a pure open-source
workflow in R, and other morphometrics approaches
should be easy to plug in, or develop from, on top
of this canvas.
Author: Vincent Bonhomme [aut, cre],
Julien Claude [aut]
Maintainer: Vincent Bonhomme <bonhomme.vincent@gmail.com>
Diff between Momocs versions 1.1.6 dated 2017-04-17 and 1.2.2 dated 2017-09-28
Momocs-1.1.6/Momocs/R/mult-Manova.R |only Momocs-1.1.6/Momocs/man/Momocs_lastversion.Rd |only Momocs-1.1.6/Momocs/man/transmute.Rd |only Momocs-1.1.6/Momocs/tests/testthat/test-babel.R |only Momocs-1.2.2/Momocs/DESCRIPTION | 37 - Momocs-1.2.2/Momocs/MD5 | 589 ++++++++-------- Momocs-1.2.2/Momocs/NAMESPACE | 60 + Momocs-1.2.2/Momocs/R/Momocs-package.R | 7 Momocs-1.2.2/Momocs/R/babel-bridges.R | 100 ++ Momocs-1.2.2/Momocs/R/babel-export.R | 1 Momocs-1.2.2/Momocs/R/babel-import.R | 49 - Momocs-1.2.2/Momocs/R/cl-def-Opn.R | 1 Momocs-1.2.2/Momocs/R/cl-def-Out.R | 1 Momocs-1.2.2/Momocs/R/cl-handling.R | 72 - Momocs-1.2.2/Momocs/R/cl-utilities.R | 131 ++- Momocs-1.2.2/Momocs/R/coo-shapedescriptors.R | 56 + Momocs-1.2.2/Momocs/R/coo-utilities.R | 2 Momocs-1.2.2/Momocs/R/core-out-sfourier.R | 2 Momocs-1.2.2/Momocs/R/gr-PCA.R | 23 Momocs-1.2.2/Momocs/R/gr-domesticplotters.R | 18 Momocs-1.2.2/Momocs/R/gr-layers.R | 26 Momocs-1.2.2/Momocs/R/mult-LDA.R | 106 ++ Momocs-1.2.2/Momocs/R/mult-MANOVA.R |only Momocs-1.2.2/Momocs/R/mult-PCA.R | 28 Momocs-1.2.2/Momocs/R/mult-clust.R | 22 Momocs-1.2.2/Momocs/R/pkg-datasets.R | 11 Momocs-1.2.2/Momocs/R/pkg-misc.R | 96 ++ Momocs-1.2.2/Momocs/build/vignette.rds |binary Momocs-1.2.2/Momocs/data/bot.rda |binary Momocs-1.2.2/Momocs/data/datalist |only Momocs-1.2.2/Momocs/data/flower.rda |binary Momocs-1.2.2/Momocs/data/nsfishes.rda |only Momocs-1.2.2/Momocs/inst/NEWS.Rd | 15 Momocs-1.2.2/Momocs/inst/doc/Momocs_speed_dating.R | 18 Momocs-1.2.2/Momocs/inst/doc/Momocs_speed_dating.Rmd | 31 Momocs-1.2.2/Momocs/inst/doc/Momocs_speed_dating.html | 338 ++++----- Momocs-1.2.2/Momocs/inst/extdata |only Momocs-1.2.2/Momocs/man/CLUST.Rd | 4 Momocs-1.2.2/Momocs/man/Coe.Rd | 1 Momocs-1.2.2/Momocs/man/Coo.Rd | 1 Momocs-1.2.2/Momocs/man/KMEANS.Rd | 3 Momocs-1.2.2/Momocs/man/LDA.Rd | 6 Momocs-1.2.2/Momocs/man/Ldk.Rd | 1 Momocs-1.2.2/Momocs/man/MANOVA.Rd | 6 Momocs-1.2.2/Momocs/man/MANOVA_PW.Rd | 6 Momocs-1.2.2/Momocs/man/Momocs.Rd | 4 Momocs-1.2.2/Momocs/man/Momocs_help.Rd | 1 Momocs-1.2.2/Momocs/man/Momocs_version.Rd | 26 Momocs-1.2.2/Momocs/man/Ntable.Rd | 1 Momocs-1.2.2/Momocs/man/Opn.Rd | 1 Momocs-1.2.2/Momocs/man/OpnCoe.Rd | 1 Momocs-1.2.2/Momocs/man/Out.Rd | 1 Momocs-1.2.2/Momocs/man/OutCoe.Rd | 1 Momocs-1.2.2/Momocs/man/PCA.Rd | 26 Momocs-1.2.2/Momocs/man/PCcontrib.Rd | 1 Momocs-1.2.2/Momocs/man/Ptolemy.Rd | 1 Momocs-1.2.2/Momocs/man/TraCoe.Rd | 1 Momocs-1.2.2/Momocs/man/a2l.Rd | 8 Momocs-1.2.2/Momocs/man/a2m.Rd | 8 Momocs-1.2.2/Momocs/man/add_ldk.Rd | 4 Momocs-1.2.2/Momocs/man/arrange.Rd | 3 Momocs-1.2.2/Momocs/man/as.Out.Rd | 1 Momocs-1.2.2/Momocs/man/as_df.Rd | 8 Momocs-1.2.2/Momocs/man/at_least.Rd | 3 Momocs-1.2.2/Momocs/man/bezier.Rd | 1 Momocs-1.2.2/Momocs/man/bezier_i.Rd | 1 Momocs-1.2.2/Momocs/man/bind_db.Rd | 1 Momocs-1.2.2/Momocs/man/boxplot.OutCoe.Rd | 3 Momocs-1.2.2/Momocs/man/boxplot.PCA.Rd | 1 Momocs-1.2.2/Momocs/man/breed.Rd | 3 Momocs-1.2.2/Momocs/man/calibrate_deviations.Rd | 1 Momocs-1.2.2/Momocs/man/calibrate_harmonicpower.Rd | 1 Momocs-1.2.2/Momocs/man/calibrate_r2.Rd | 1 Momocs-1.2.2/Momocs/man/calibrate_reconstructions.Rd | 1 Momocs-1.2.2/Momocs/man/chc2Out.Rd | 1 Momocs-1.2.2/Momocs/man/chc2pix.Rd | 1 Momocs-1.2.2/Momocs/man/chop.Rd | 3 Momocs-1.2.2/Momocs/man/classification_metrics.Rd |only Momocs-1.2.2/Momocs/man/classify.Rd | 1 Momocs-1.2.2/Momocs/man/coeff_rearrange.Rd | 1 Momocs-1.2.2/Momocs/man/coeff_sel.Rd | 1 Momocs-1.2.2/Momocs/man/coeff_split.Rd | 1 Momocs-1.2.2/Momocs/man/color_palettes.Rd | 19 Momocs-1.2.2/Momocs/man/colors_transp.Rd | 3 Momocs-1.2.2/Momocs/man/combine.Rd | 3 Momocs-1.2.2/Momocs/man/conf_ell.Rd | 1 Momocs-1.2.2/Momocs/man/coo2cpx.Rd |only Momocs-1.2.2/Momocs/man/coo_align.Rd | 8 Momocs-1.2.2/Momocs/man/coo_aligncalliper.Rd | 8 Momocs-1.2.2/Momocs/man/coo_alignminradius.Rd | 8 Momocs-1.2.2/Momocs/man/coo_alignxax.Rd | 8 Momocs-1.2.2/Momocs/man/coo_area.Rd | 1 Momocs-1.2.2/Momocs/man/coo_arrows.Rd | 1 Momocs-1.2.2/Momocs/man/coo_baseline.Rd | 8 Momocs-1.2.2/Momocs/man/coo_bookstein.Rd | 8 Momocs-1.2.2/Momocs/man/coo_boundingbox.Rd | 38 - Momocs-1.2.2/Momocs/man/coo_calliper.Rd | 9 Momocs-1.2.2/Momocs/man/coo_centdist.Rd | 9 Momocs-1.2.2/Momocs/man/coo_center.Rd | 10 Momocs-1.2.2/Momocs/man/coo_centpos.Rd | 9 Momocs-1.2.2/Momocs/man/coo_centsize.Rd | 1 Momocs-1.2.2/Momocs/man/coo_check.Rd | 1 Momocs-1.2.2/Momocs/man/coo_chull.Rd | 1 Momocs-1.2.2/Momocs/man/coo_chull_onion.Rd |only Momocs-1.2.2/Momocs/man/coo_circularity.Rd | 1 Momocs-1.2.2/Momocs/man/coo_circularityharalick.Rd | 1 Momocs-1.2.2/Momocs/man/coo_circularitynorm.Rd | 1 Momocs-1.2.2/Momocs/man/coo_close.Rd | 13 Momocs-1.2.2/Momocs/man/coo_convexity.Rd | 1 Momocs-1.2.2/Momocs/man/coo_down.Rd | 13 Momocs-1.2.2/Momocs/man/coo_draw.Rd | 1 Momocs-1.2.2/Momocs/man/coo_draw_rads.Rd |only Momocs-1.2.2/Momocs/man/coo_dxy.Rd | 7 Momocs-1.2.2/Momocs/man/coo_eccentricityboundingbox.Rd | 1 Momocs-1.2.2/Momocs/man/coo_eccentricityeigen.Rd | 1 Momocs-1.2.2/Momocs/man/coo_elongation.Rd | 1 Momocs-1.2.2/Momocs/man/coo_extract.Rd | 17 Momocs-1.2.2/Momocs/man/coo_flip.Rd | 11 Momocs-1.2.2/Momocs/man/coo_force2close.Rd | 24 Momocs-1.2.2/Momocs/man/coo_interpolate.Rd | 30 Momocs-1.2.2/Momocs/man/coo_jitter.Rd | 8 Momocs-1.2.2/Momocs/man/coo_ldk.Rd | 1 Momocs-1.2.2/Momocs/man/coo_left.Rd | 14 Momocs-1.2.2/Momocs/man/coo_length.Rd | 1 Momocs-1.2.2/Momocs/man/coo_listpanel.Rd | 1 Momocs-1.2.2/Momocs/man/coo_lolli.Rd | 1 Momocs-1.2.2/Momocs/man/coo_lw.Rd | 1 Momocs-1.2.2/Momocs/man/coo_nb.Rd | 8 Momocs-1.2.2/Momocs/man/coo_oscillo.Rd | 1 Momocs-1.2.2/Momocs/man/coo_perim.Rd | 14 Momocs-1.2.2/Momocs/man/coo_perimcum.Rd | 14 Momocs-1.2.2/Momocs/man/coo_perimpts.Rd | 14 Momocs-1.2.2/Momocs/man/coo_plot.Rd | 1 Momocs-1.2.2/Momocs/man/coo_rectangularity.Rd | 1 Momocs-1.2.2/Momocs/man/coo_rectilinearity.Rd | 1 Momocs-1.2.2/Momocs/man/coo_rev.Rd | 8 Momocs-1.2.2/Momocs/man/coo_right.Rd | 14 Momocs-1.2.2/Momocs/man/coo_rotate.Rd | 8 Momocs-1.2.2/Momocs/man/coo_rotatecenter.Rd | 12 Momocs-1.2.2/Momocs/man/coo_ruban.Rd | 1 Momocs-1.2.2/Momocs/man/coo_sample.Rd | 14 Momocs-1.2.2/Momocs/man/coo_samplerr.Rd | 14 Momocs-1.2.2/Momocs/man/coo_scale.Rd | 8 Momocs-1.2.2/Momocs/man/coo_scalexy.Rd | 8 Momocs-1.2.2/Momocs/man/coo_shear.Rd | 12 Momocs-1.2.2/Momocs/man/coo_slice.Rd | 8 Momocs-1.2.2/Momocs/man/coo_slide.Rd | 14 Momocs-1.2.2/Momocs/man/coo_slidedirection.Rd | 14 Momocs-1.2.2/Momocs/man/coo_slidegap.Rd | 14 Momocs-1.2.2/Momocs/man/coo_smooth.Rd | 12 Momocs-1.2.2/Momocs/man/coo_smoothcurve.Rd | 12 Momocs-1.2.2/Momocs/man/coo_solidity.Rd | 1 Momocs-1.2.2/Momocs/man/coo_tangle.Rd | 1 Momocs-1.2.2/Momocs/man/coo_template.Rd | 8 Momocs-1.2.2/Momocs/man/coo_theta3.Rd | 1 Momocs-1.2.2/Momocs/man/coo_thetapts.Rd | 1 Momocs-1.2.2/Momocs/man/coo_trans.Rd | 8 Momocs-1.2.2/Momocs/man/coo_trim.Rd | 8 Momocs-1.2.2/Momocs/man/coo_trimbottom.Rd | 8 Momocs-1.2.2/Momocs/man/coo_trimtop.Rd | 8 Momocs-1.2.2/Momocs/man/coo_up.Rd | 14 Momocs-1.2.2/Momocs/man/coo_width.Rd | 1 Momocs-1.2.2/Momocs/man/cpx2coo.Rd |only Momocs-1.2.2/Momocs/man/d.Rd | 1 Momocs-1.2.2/Momocs/man/d2m.Rd |only Momocs-1.2.2/Momocs/man/data_apodemus.Rd | 7 Momocs-1.2.2/Momocs/man/data_bot.Rd | 8 Momocs-1.2.2/Momocs/man/data_chaff.Rd | 7 Momocs-1.2.2/Momocs/man/data_charring.Rd | 7 Momocs-1.2.2/Momocs/man/data_flower.Rd | 7 Momocs-1.2.2/Momocs/man/data_hearts.Rd | 7 Momocs-1.2.2/Momocs/man/data_molars.Rd | 7 Momocs-1.2.2/Momocs/man/data_mosquito.Rd | 7 Momocs-1.2.2/Momocs/man/data_mouse.Rd | 7 Momocs-1.2.2/Momocs/man/data_nsfishes.Rd |only Momocs-1.2.2/Momocs/man/data_oak.Rd | 7 Momocs-1.2.2/Momocs/man/data_olea.Rd | 7 Momocs-1.2.2/Momocs/man/data_shapes.Rd | 7 Momocs-1.2.2/Momocs/man/data_trilo.Rd | 7 Momocs-1.2.2/Momocs/man/data_wings.Rd | 7 Momocs-1.2.2/Momocs/man/def_ldk.Rd | 4 Momocs-1.2.2/Momocs/man/def_links.Rd | 1 Momocs-1.2.2/Momocs/man/def_slidings.Rd | 4 Momocs-1.2.2/Momocs/man/dfourier.Rd | 5 Momocs-1.2.2/Momocs/man/dfourier_i.Rd | 1 Momocs-1.2.2/Momocs/man/dfourier_shape.Rd | 1 Momocs-1.2.2/Momocs/man/dissolve.Rd | 3 Momocs-1.2.2/Momocs/man/ed.Rd | 1 Momocs-1.2.2/Momocs/man/edi.Rd | 1 Momocs-1.2.2/Momocs/man/edm.Rd | 1 Momocs-1.2.2/Momocs/man/edm_nearest.Rd | 1 Momocs-1.2.2/Momocs/man/efourier.Rd | 3 Momocs-1.2.2/Momocs/man/efourier_i.Rd | 1 Momocs-1.2.2/Momocs/man/efourier_norm.Rd | 1 Momocs-1.2.2/Momocs/man/efourier_shape.Rd | 1 Momocs-1.2.2/Momocs/man/export.Rd | 1 Momocs-1.2.2/Momocs/man/fProcrustes.Rd | 1 Momocs-1.2.2/Momocs/man/fgProcrustes.Rd | 1 Momocs-1.2.2/Momocs/man/fgsProcrustes.Rd | 1 Momocs-1.2.2/Momocs/man/filter.Rd | 3 Momocs-1.2.2/Momocs/man/flip_PCaxes.Rd | 1 Momocs-1.2.2/Momocs/man/get_chull_area.Rd | 1 Momocs-1.2.2/Momocs/man/get_ldk.Rd | 4 Momocs-1.2.2/Momocs/man/get_pairs.Rd | 1 Momocs-1.2.2/Momocs/man/get_slidings.Rd | 4 Momocs-1.2.2/Momocs/man/harm.contrib.Rd | 1 Momocs-1.2.2/Momocs/man/harm_pow.Rd | 1 Momocs-1.2.2/Momocs/man/hist.OutCoe.Rd | 3 Momocs-1.2.2/Momocs/man/img_plot.Rd | 1 Momocs-1.2.2/Momocs/man/import_Conte.Rd | 1 Momocs-1.2.2/Momocs/man/import_StereoMorph.Rd | 5 Momocs-1.2.2/Momocs/man/import_jpg.Rd | 3 Momocs-1.2.2/Momocs/man/import_jpg1.Rd | 1 Momocs-1.2.2/Momocs/man/import_tps.Rd | 5 Momocs-1.2.2/Momocs/man/import_txt.Rd | 9 Momocs-1.2.2/Momocs/man/is.Rd | 76 +- Momocs-1.2.2/Momocs/man/is_clockwise.Rd | 10 Momocs-1.2.2/Momocs/man/is_closed.Rd | 8 Momocs-1.2.2/Momocs/man/is_equallyspacedradii.Rd | 8 Momocs-1.2.2/Momocs/man/l2a.Rd | 11 Momocs-1.2.2/Momocs/man/l2m.Rd | 12 Momocs-1.2.2/Momocs/man/ldk_check.Rd | 1 Momocs-1.2.2/Momocs/man/ldk_chull.Rd | 9 Momocs-1.2.2/Momocs/man/ldk_confell.Rd | 9 Momocs-1.2.2/Momocs/man/ldk_contour.Rd | 9 Momocs-1.2.2/Momocs/man/ldk_labels.Rd | 9 Momocs-1.2.2/Momocs/man/ldk_links.Rd | 9 Momocs-1.2.2/Momocs/man/lf_structure.Rd | 1 Momocs-1.2.2/Momocs/man/links_all.Rd | 1 Momocs-1.2.2/Momocs/man/links_delaunay.Rd | 1 Momocs-1.2.2/Momocs/man/list_classes.Rd |only Momocs-1.2.2/Momocs/man/m2a.Rd | 6 Momocs-1.2.2/Momocs/man/m2d.Rd | 22 Momocs-1.2.2/Momocs/man/m2l.Rd | 6 Momocs-1.2.2/Momocs/man/m2ll.Rd | 6 Momocs-1.2.2/Momocs/man/measure.Rd | 1 Momocs-1.2.2/Momocs/man/mshapes.Rd | 11 Momocs-1.2.2/Momocs/man/mutate.Rd | 3 Momocs-1.2.2/Momocs/man/nef2Coe.Rd | 1 Momocs-1.2.2/Momocs/man/npoly.Rd | 3 Momocs-1.2.2/Momocs/man/ntsrow2Coo.Rd | 3 Momocs-1.2.2/Momocs/man/opoly.Rd | 3 Momocs-1.2.2/Momocs/man/pProcrustes.Rd | 1 Momocs-1.2.2/Momocs/man/panel.Coo.Rd | 5 Momocs-1.2.2/Momocs/man/panel2.Rd | 1 Momocs-1.2.2/Momocs/man/perm.Rd | 3 Momocs-1.2.2/Momocs/man/pix2chc.Rd | 1 Momocs-1.2.2/Momocs/man/plot.Coo.Rd | 1 Momocs-1.2.2/Momocs/man/plot.LDA.Rd | 1 Momocs-1.2.2/Momocs/man/plot.PCA.Rd | 15 Momocs-1.2.2/Momocs/man/plot2.PCA.Rd | 1 Momocs-1.2.2/Momocs/man/plot3.PCA.Rd | 1 Momocs-1.2.2/Momocs/man/plot_CV.Rd | 3 Momocs-1.2.2/Momocs/man/plot_CV2.Rd | 1 Momocs-1.2.2/Momocs/man/plot_devsegments.Rd | 1 Momocs-1.2.2/Momocs/man/plot_mshapes.Rd | 1 Momocs-1.2.2/Momocs/man/poly_i.Rd | 3 Momocs-1.2.2/Momocs/man/pos.shapes.Rd | 1 Momocs-1.2.2/Momocs/man/reLDA.Rd | 5 Momocs-1.2.2/Momocs/man/rePCA.Rd | 1 Momocs-1.2.2/Momocs/man/rearrange_ldk.Rd |only Momocs-1.2.2/Momocs/man/reexports.Rd | 11 Momocs-1.2.2/Momocs/man/rename.Rd | 3 Momocs-1.2.2/Momocs/man/rescale.Rd | 1 Momocs-1.2.2/Momocs/man/rfourier.Rd | 3 Momocs-1.2.2/Momocs/man/rfourier_i.Rd | 1 Momocs-1.2.2/Momocs/man/rfourier_shape.Rd | 1 Momocs-1.2.2/Momocs/man/rm_asym.Rd | 6 Momocs-1.2.2/Momocs/man/rm_harm.Rd | 1 Momocs-1.2.2/Momocs/man/rm_uncomplete.Rd | 3 Momocs-1.2.2/Momocs/man/rw_fac.Rd | 3 Momocs-1.2.2/Momocs/man/sample_frac.Rd | 3 Momocs-1.2.2/Momocs/man/sample_n.Rd | 3 Momocs-1.2.2/Momocs/man/scree.Rd | 3 Momocs-1.2.2/Momocs/man/select.Rd | 12 Momocs-1.2.2/Momocs/man/sfourier.Rd | 5 Momocs-1.2.2/Momocs/man/sfourier_i.Rd | 1 Momocs-1.2.2/Momocs/man/sfourier_shape.Rd | 1 Momocs-1.2.2/Momocs/man/slice.Rd | 3 Momocs-1.2.2/Momocs/man/slidings_scheme.Rd | 4 Momocs-1.2.2/Momocs/man/stack.Coo.Rd | 1 Momocs-1.2.2/Momocs/man/stack2.Rd | 1 Momocs-1.2.2/Momocs/man/subset.Rd | 5 Momocs-1.2.2/Momocs/man/symmetry.Rd | 1 Momocs-1.2.2/Momocs/man/table.Rd | 7 Momocs-1.2.2/Momocs/man/tfourier.Rd | 3 Momocs-1.2.2/Momocs/man/tfourier_i.Rd | 1 Momocs-1.2.2/Momocs/man/tfourier_shape.Rd | 1 Momocs-1.2.2/Momocs/man/tie_jpg_txt.Rd | 1 Momocs-1.2.2/Momocs/man/tps2coo.Rd | 1 Momocs-1.2.2/Momocs/man/tps2d.Rd | 1 Momocs-1.2.2/Momocs/man/tps_arr.Rd | 1 Momocs-1.2.2/Momocs/man/tps_grid.Rd | 1 Momocs-1.2.2/Momocs/man/tps_iso.Rd | 1 Momocs-1.2.2/Momocs/man/tps_raw.Rd | 1 Momocs-1.2.2/Momocs/man/truss.Rd | 1 Momocs-1.2.2/Momocs/man/validate.Rd | 1 Momocs-1.2.2/Momocs/man/vecs_param.Rd | 1 Momocs-1.2.2/Momocs/man/which_out.Rd | 1 Momocs-1.2.2/Momocs/tests/testthat/borders.jpg |only Momocs-1.2.2/Momocs/tests/testthat/lm.tps |only Momocs-1.2.2/Momocs/tests/testthat/outlines.tps |only Momocs-1.2.2/Momocs/tests/testthat/rvb.jpg |only Momocs-1.2.2/Momocs/tests/testthat/test-babel-bridges.R |only Momocs-1.2.2/Momocs/tests/testthat/test-babel-export.R |only Momocs-1.2.2/Momocs/tests/testthat/test-babel-import.R |only Momocs-1.2.2/Momocs/vignettes/Momocs_speed_dating.Rmd | 31 307 files changed, 1839 insertions(+), 1334 deletions(-)
Title: EXIF Image Data in R
Description: Reads EXIF data using ExifTool <http://www.sno.phy.queensu.ca/~phil/exiftool/>
and returns results as a data frame.
ExifTool is a platform-independent Perl library plus a command-line
application for reading, writing and editing meta information in a wide variety
of files. ExifTool supports many different metadata formats including EXIF,
GPS, IPTC, XMP, JFIF, GeoTIFF, ICC Profile, Photoshop IRB, FlashPix, AFCP and
ID3, as well as the maker notes of many digital cameras by Canon, Casio, FLIR,
FujiFilm, GE, HP, JVC/Victor, Kodak, Leaf, Minolta/Konica-Minolta, Motorola, Nikon,
Nintendo, Olympus/Epson, Panasonic/Leica, Pentax/Asahi, Phase One, Reconyx, Ricoh,
Samsung, Sanyo, Sigma/Foveon and Sony.
Author: Dewey Dunnington [aut, cre],
Phil Harvey [aut]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between exifr versions 0.1.1 dated 2016-02-05 and 0.2 dated 2017-09-28
exifr-0.1.1/exifr/R/getexif.R |only exifr-0.1.1/exifr/R/loadhook.R |only exifr-0.1.1/exifr/inst/Canon.jpg |only exifr-0.2/exifr/DESCRIPTION | 12 +- exifr-0.2/exifr/MD5 | 26 ++++- exifr-0.2/exifr/NAMESPACE | 7 + exifr-0.2/exifr/R/load_hook.R |only exifr-0.2/exifr/R/read_exif.R |only exifr-0.2/exifr/R/read_exif_old.R |only exifr-0.2/exifr/R/utils.R |only exifr-0.2/exifr/README.md | 132 +++++++++++++++++++++++++++--- exifr-0.2/exifr/inst/images |only exifr-0.2/exifr/man/configure_exiftool.Rd |only exifr-0.2/exifr/man/exifr.Rd | 35 ------- exifr-0.2/exifr/man/exiftool.call.Rd | 14 --- exifr-0.2/exifr/man/exiftool_call.Rd |only exifr-0.2/exifr/man/read_exif.Rd |only exifr-0.2/exifr/tests |only 18 files changed, 159 insertions(+), 67 deletions(-)
Title: The Chopthin Resampler
Description: Resampling is a standard step in particle filtering and in
sequential Monte Carlo. This package implements the chopthin resampler, which
keeps a bound on the ratio between the largest and the smallest weights after
resampling.
Author: Axel Gandy and F. Din-Houn Lau
Maintainer: Axel Gandy <a.gandy@imperial.ac.uk>
Diff between chopthin versions 0.2.1 dated 2016-01-05 and 0.2.2 dated 2017-09-28
DESCRIPTION | 10 +++++----- MD5 | 22 ++++++++++++---------- NAMESPACE | 2 +- R/RcppExports.R | 6 +++--- R/chopthin.R | 2 +- inst/CITATION | 9 ++++++--- inst/NEWS.Rd | 7 +++++++ man/chopthin.Rd | 3 +-- src/RcppExports.cpp | 12 ++++++------ src/chopthin.cpp | 2 +- src/chopthin_internal.h | 30 ++++++++++++++++++++++++++---- src/init.c |only tests/testthat/test-numericalproblems.R |only 13 files changed, 69 insertions(+), 36 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.6.3) and access to projection/transformation operations from the 'PROJ.4' library. The 'GDAL' and 'PROJ.4' libraries are external to the package, and, when installing the package from source, must be correctly installed first. Both 'GDAL' raster and 'OGR' vector map data can be imported into R, and 'GDAL' raster data and 'OGR' vector data exported. Use is made of classes defined in the 'sp' package. Windows and Mac Intel OS X binaries (including 'GDAL', 'PROJ.4' and 'Expat') are provided on 'CRAN'.
Author: Roger Bivand [cre, aut],
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Even Rouault [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.2-11 dated 2017-09-19 and 1.2-12 dated 2017-09-28
ChangeLog | 16 DESCRIPTION | 12 MD5 | 14 configure | 1855 ++-------------------------------------- configure.ac | 38 inst/ChangeLog | 16 inst/SVN_VERSION | 2 inst/doc/OGR_shape_encoding.pdf |binary 8 files changed, 180 insertions(+), 1773 deletions(-)
Title: Build Regression Models Quickly and Display the Results Using
'ggplot2'
Description: A set of functions to extract results from regression models and
plot the effect size using 'ggplot2' seamlessly. While 'broom' is useful to
convert statistical analysis objects into tidy data frames, 'coefplot' is adept at showing
multivariate regression results. With specific outcome, this package could build regression models
automatically, extract results into a data frame and provide a quicker way to summarize
models' statistical findings using 'ggplot2'.
Author: Xikun Han [aut, cre]
Maintainer: Xikun Han <hanxikun2014@163.com>
Diff between quickReg versions 1.0.0 dated 2016-08-27 and 1.5.0 dated 2017-09-28
quickReg-1.0.0/quickReg/R/dataframe.R |only quickReg-1.0.0/quickReg/R/dataframe.reg.R |only quickReg-1.0.0/quickReg/R/detail.R |only quickReg-1.0.0/quickReg/R/detail.reg.R |only quickReg-1.0.0/quickReg/R/display.R |only quickReg-1.0.0/quickReg/R/display.data.frame.R |only quickReg-1.0.0/quickReg/R/display.reg.R |only quickReg-1.0.0/quickReg/man/dataframe.Rd |only quickReg-1.0.0/quickReg/man/dataframe.reg.Rd |only quickReg-1.0.0/quickReg/man/detail.Rd |only quickReg-1.0.0/quickReg/man/detail.reg.Rd |only quickReg-1.0.0/quickReg/man/display.Rd |only quickReg-1.0.0/quickReg/man/display.data.frame.Rd |only quickReg-1.0.0/quickReg/man/display.reg.Rd |only quickReg-1.5.0/quickReg/DESCRIPTION | 14 quickReg-1.5.0/quickReg/MD5 | 51 - quickReg-1.5.0/quickReg/NAMESPACE | 49 - quickReg-1.5.0/quickReg/NEWS | 57 - quickReg-1.5.0/quickReg/R/data.R | 40 - quickReg-1.5.0/quickReg/R/display_table.R |only quickReg-1.5.0/quickReg/R/plot.reg.R | 259 +++++-- quickReg-1.5.0/quickReg/R/reg.R | 209 ++---- quickReg-1.5.0/quickReg/R/reg_x.R |only quickReg-1.5.0/quickReg/R/reg_y.R |only quickReg-1.5.0/quickReg/README.md |only quickReg-1.5.0/quickReg/build/vignette.rds |binary quickReg-1.5.0/quickReg/inst/doc/quickReg.R | 214 +++--- quickReg-1.5.0/quickReg/inst/doc/quickReg.Rmd | 316 ++++----- quickReg-1.5.0/quickReg/inst/doc/quickReg.html | 752 +++++++++++----------- quickReg-1.5.0/quickReg/man/diabetes.Rd | 59 - quickReg-1.5.0/quickReg/man/display_table.Rd |only quickReg-1.5.0/quickReg/man/plot.reg.Rd | 78 +- quickReg-1.5.0/quickReg/man/reg.Rd | 83 +- quickReg-1.5.0/quickReg/man/reg_x.Rd |only quickReg-1.5.0/quickReg/man/reg_y.Rd |only quickReg-1.5.0/quickReg/tests |only quickReg-1.5.0/quickReg/vignettes/quickReg.Rmd | 316 ++++----- 37 files changed, 1351 insertions(+), 1146 deletions(-)
Title: Taxonomic Information from Around the Web
Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
such as getting database specific taxonomic identifiers, verifying
species names, getting taxonomic hierarchies, fetching downstream and
upstream taxonomic names, getting taxonomic synonyms, converting
scientific to common names and vice versa, and more.
Author: Scott Chamberlain [aut, cre],
Eduard Szoecs [aut],
Zachary Foster [aut],
Carl Boettiger [ctb],
Karthik Ram [ctb],
Ignasi Bartomeus [ctb],
John Baumgartner [ctb],
James O'Donnell [ctb],
Jari Oksanen [ctb]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between taxize versions 0.8.9 dated 2017-07-11 and 0.9.0 dated 2017-09-28
DESCRIPTION | 14 +- MD5 | 163 +++++++++++++------------ NAMESPACE | 9 + NEWS.md | 221 ++++++++++++++++++++++------------- R/children.R | 2 R/classification.R | 2 R/col_downstream.R | 39 +++--- R/comm2sci.R | 227 +++++++++++++++++++++--------------- R/downstream-utils.R | 7 + R/downstream.R | 2 R/eol_search.R | 31 +++- R/get-id-details.R |only R/get_boldid.R | 84 +++++++------ R/get_colid.R | 63 ++++++--- R/get_eolid.R | 17 ++ R/get_gbifid.R | 72 +++++++---- R/get_iucn.R | 3 R/get_natservid.R | 43 ++++-- R/get_nbnid.R | 21 ++- R/get_tolid.R | 48 ++++--- R/get_tpsid.R | 63 ++++++--- R/get_tsn.R | 46 +++++-- R/get_uid.R | 177 +++++++++++++++------------- R/get_wiki.R | 38 ++++-- R/get_wormsid.R | 32 +++-- R/iucn_getname.R | 3 R/iucn_id.R | 31 +--- R/iucn_summary.R | 182 +++++++++++++++++++++------- R/ping.R | 13 +- R/sci2comm.R | 17 ++ R/synonyms.R | 2 R/tax_name.R | 11 + R/taxize-package.R | 14 +- R/tpl_get.r | 1 R/upstream.R | 2 R/zzz.R | 15 +- README.md | 85 ++++++++++--- data/rank_ref.RData |binary man/children.Rd | 2 man/classification.Rd | 2 man/comm2sci.Rd | 43 +++--- man/downstream.Rd | 2 man/eol_search.Rd | 12 + man/get_boldid.Rd | 36 ----- man/get_colid.Rd | 18 -- man/get_eolid.Rd | 18 -- man/get_gbifid.Rd | 18 -- man/get_id_details.Rd |only man/get_iucn.Rd | 2 man/get_natservid.Rd | 22 --- man/get_nbnid.Rd | 18 -- man/get_tolid.Rd | 18 -- man/get_tpsid.Rd | 18 -- man/get_tsn.Rd | 18 -- man/get_uid.Rd | 111 +++++++---------- man/get_wiki.Rd | 18 -- man/get_wormsid.Rd | 20 --- man/iucn_getname.Rd | 3 man/iucn_id.Rd | 8 - man/iucn_summary.Rd | 28 ++-- man/rank_ref.Rd | 15 +- man/sci2comm.Rd | 3 man/synonyms.Rd | 2 man/tax_name.Rd | 7 - man/tpl_get.Rd | 1 man/upstream.Rd | 2 tests/testthat/Rplots.pdf |binary tests/testthat/helper-taxize.R |only tests/testthat/test-bold_search.R | 14 +- tests/testthat/test-comm2sci.R | 15 ++ tests/testthat/test-downstream.R | 14 ++ tests/testthat/test-get_boldid.R | 32 +++++ tests/testthat/test-get_colid.R | 33 +++++ tests/testthat/test-get_eolid.R | 15 ++ tests/testthat/test-get_gbifid.R | 33 +++++ tests/testthat/test-get_natservid.R | 6 tests/testthat/test-get_tpsid.R | 23 +++ tests/testthat/test-get_tsn.R | 35 +++++ tests/testthat/test-get_uid.R | 33 +++++ tests/testthat/test-get_wormsid.R | 13 -- tests/testthat/test-iucn_summary.R | 18 +- tests/testthat/test-sci2comm.R | 6 tests/testthat/test-synonyms.R | 4 tests/testthat/test-tax_name.R | 22 ++- 84 files changed, 1572 insertions(+), 1009 deletions(-)
Title: Panel Generalized Linear Models
Description: Estimation of panel models for glm-like models: this includes binomial models (logit and probit) count models (poisson and negbin) and ordered models (logit and probit).
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between pglm versions 0.1-2 dated 2013-12-28 and 0.2-0 dated 2017-09-28
pglm-0.1-2/pglm/data/PatsRD.rda |only pglm-0.1-2/pglm/data/Unions.rda |only pglm-0.1-2/pglm/man/PatsRD.Rd |only pglm-0.1-2/pglm/man/Unions.Rd |only pglm-0.2-0/pglm/DESCRIPTION | 18 - pglm-0.2-0/pglm/MD5 | 30 +-- pglm-0.2-0/pglm/NAMESPACE | 3 pglm-0.2-0/pglm/R/lnl.tobit.R | 330 +++++++++++++++++------------------ pglm-0.2-0/pglm/R/pglm.R | 9 pglm-0.2-0/pglm/R/start.R | 1 pglm-0.2-0/pglm/data/Fairness.rda |binary pglm-0.2-0/pglm/data/HealthIns.rda |binary pglm-0.2-0/pglm/data/PatentsRD.rda |only pglm-0.2-0/pglm/data/PatentsRDUS.rda |only pglm-0.2-0/pglm/data/UnionWage.rda |only pglm-0.2-0/pglm/man/Fairness.Rd | 35 +-- pglm-0.2-0/pglm/man/HealthIns.Rd | 55 ++--- pglm-0.2-0/pglm/man/PatentsRD.Rd |only pglm-0.2-0/pglm/man/PatentsRDUS.Rd |only pglm-0.2-0/pglm/man/UnionWage.Rd |only pglm-0.2-0/pglm/man/pglm.Rd | 14 - 21 files changed, 249 insertions(+), 246 deletions(-)