Title: Empirical Bayes Variable Selection via ICM/M Algorithm
Description: Carries out empirical Bayes variable selection via ICM/M algorithm. The basic problem is to fit high-dimensional regression which most coefficients are assumed to be zero. This package allows incorporating the Ising prior to capture structure of predictors in the modeling process. The current version of this package can handle the normal, binary logistic, and Cox's regression (Pungpapong et. al. (2015) <doi:10.1214/15-EJS1034>, Pungpapong et. al. (2017) <arXiv:1707.08298>).
Author: Vitara Pungpapong [aut, cre],
Min Zhang [aut],
Dabao Zhang [aut]
Maintainer: Vitara Pungpapong <vitara@cbs.chula.ac.th>
Diff between icmm versions 1.0 dated 2017-07-27 and 1.1 dated 2017-10-11
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/get.ab.R | 2 +- R/icmm.R | 4 ++-- man/get.pseudodata.binomial.Rd | 8 ++++---- man/get.pseudodata.cox.Rd | 10 +++++----- man/get.sigma.Rd | 4 ++-- man/icmm-package.Rd | 4 ++-- man/icmm.Rd | 8 ++++---- man/linearrelation.Rd | 2 +- 10 files changed, 33 insertions(+), 33 deletions(-)
Title: Probabilistic Population Projection
Description: Generating population projections for all countries of the world using several probabilistic components, such as total fertility rate and life expectancy.
Author: Hana Sevcikova, Adrian Raftery, Thomas Buettner
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesPop versions 6.2-1 dated 2017-09-30 and 6.2-2 dated 2017-10-11
ChangeLog | 5 +++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/adjustments.R | 2 +- man/bayesPop-package.Rd | 4 ++-- tests/run_tests.R | 1 + tests/test_functions.R | 14 ++++++++++++++ 7 files changed, 33 insertions(+), 13 deletions(-)
Title: The Official SolveBio API Client
Description: R language bindings for SolveBio's API.
SolveBio is a biomedical knowledge hub that enables life science
organizations to collect and harmonize the complex, disparate
"multi-omic" data essential for today's R&D and BI needs.
For more information, visit <https://www.solvebio.com>.
Author: David Caplan
Maintainer: David Caplan <dcaplan@solvebio.com>
Diff between solvebio versions 2.0.2 dated 2017-08-25 and 2.1.0 dated 2017-10-11
solvebio-2.0.2/solvebio/R/upload.R |only solvebio-2.0.2/solvebio/man/Upload.all.Rd |only solvebio-2.0.2/solvebio/man/Upload.create.Rd |only solvebio-2.0.2/solvebio/man/Upload.retrieve.Rd |only solvebio-2.1.0/solvebio/DESCRIPTION | 18 - solvebio-2.1.0/solvebio/MD5 | 166 +++++----- solvebio-2.1.0/solvebio/NAMESPACE | 21 + solvebio-2.1.0/solvebio/NEWS.md | 10 solvebio-2.1.0/solvebio/R/annotation.R | 10 solvebio-2.1.0/solvebio/R/beacon.R |only solvebio-2.1.0/solvebio/R/beacon_set.R |only solvebio-2.1.0/solvebio/R/dataset.R | 123 +++++-- solvebio-2.1.0/solvebio/R/dataset_commit.R | 15 solvebio-2.1.0/solvebio/R/dataset_export.R | 23 - solvebio-2.1.0/solvebio/R/dataset_field.R | 53 ++- solvebio-2.1.0/solvebio/R/dataset_import.R | 45 -- solvebio-2.1.0/solvebio/R/dataset_migration.R | 19 - solvebio-2.1.0/solvebio/R/object.R | 85 +++-- solvebio-2.1.0/solvebio/R/solvebio.R | 65 ++- solvebio-2.1.0/solvebio/R/user.R |only solvebio-2.1.0/solvebio/R/vault.R | 127 +++++-- solvebio-2.1.0/solvebio/R/zzz.R | 7 solvebio-2.1.0/solvebio/README.md | 19 + solvebio-2.1.0/solvebio/man/Annotator.annotate.Rd | 5 solvebio-2.1.0/solvebio/man/Beacon.all.Rd |only solvebio-2.1.0/solvebio/man/Beacon.create.Rd |only solvebio-2.1.0/solvebio/man/Beacon.delete.Rd |only solvebio-2.1.0/solvebio/man/Beacon.query.Rd |only solvebio-2.1.0/solvebio/man/Beacon.retrieve.Rd |only solvebio-2.1.0/solvebio/man/Beacon.update.Rd |only solvebio-2.1.0/solvebio/man/BeaconSet.all.Rd |only solvebio-2.1.0/solvebio/man/BeaconSet.create.Rd |only solvebio-2.1.0/solvebio/man/BeaconSet.delete.Rd |only solvebio-2.1.0/solvebio/man/BeaconSet.query.Rd |only solvebio-2.1.0/solvebio/man/BeaconSet.retrieve.Rd |only solvebio-2.1.0/solvebio/man/BeaconSet.update.Rd |only solvebio-2.1.0/solvebio/man/Dataset.all.Rd | 4 solvebio-2.1.0/solvebio/man/Dataset.count.Rd | 4 solvebio-2.1.0/solvebio/man/Dataset.create.Rd | 5 solvebio-2.1.0/solvebio/man/Dataset.data.Rd | 4 solvebio-2.1.0/solvebio/man/Dataset.delete.Rd | 4 solvebio-2.1.0/solvebio/man/Dataset.facets.Rd | 4 solvebio-2.1.0/solvebio/man/Dataset.get_by_full_path.Rd | 4 solvebio-2.1.0/solvebio/man/Dataset.get_or_create_by_full_path.Rd | 4 solvebio-2.1.0/solvebio/man/Dataset.query.Rd | 4 solvebio-2.1.0/solvebio/man/Dataset.retrieve.Rd | 4 solvebio-2.1.0/solvebio/man/Dataset.update.Rd |only solvebio-2.1.0/solvebio/man/DatasetCommit.all.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetCommit.delete.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetCommit.retrieve.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetExport.all.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetExport.create.Rd | 5 solvebio-2.1.0/solvebio/man/DatasetExport.delete.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetExport.retrieve.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetField.all.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetField.create.Rd | 5 solvebio-2.1.0/solvebio/man/DatasetField.facets.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetField.retrieve.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetField.update.Rd |only solvebio-2.1.0/solvebio/man/DatasetImport.all.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetImport.create.Rd | 5 solvebio-2.1.0/solvebio/man/DatasetImport.delete.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetImport.retrieve.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetMigration.all.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetMigration.create.Rd | 5 solvebio-2.1.0/solvebio/man/DatasetMigration.delete.Rd | 4 solvebio-2.1.0/solvebio/man/DatasetMigration.retrieve.Rd | 4 solvebio-2.1.0/solvebio/man/Expression.evaluate.Rd | 4 solvebio-2.1.0/solvebio/man/Object.all.Rd | 4 solvebio-2.1.0/solvebio/man/Object.create.Rd | 5 solvebio-2.1.0/solvebio/man/Object.delete.Rd | 4 solvebio-2.1.0/solvebio/man/Object.get_by_full_path.Rd | 4 solvebio-2.1.0/solvebio/man/Object.get_by_path.Rd | 4 solvebio-2.1.0/solvebio/man/Object.get_download_url.Rd | 4 solvebio-2.1.0/solvebio/man/Object.retrieve.Rd | 4 solvebio-2.1.0/solvebio/man/Object.update.Rd |only solvebio-2.1.0/solvebio/man/Object.upload_file.Rd | 5 solvebio-2.1.0/solvebio/man/User.retrieve.Rd |only solvebio-2.1.0/solvebio/man/Vault.all.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.create.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.create_dataset.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.create_folder.Rd | 5 solvebio-2.1.0/solvebio/man/Vault.datasets.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.delete.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.files.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.folders.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.get_by_full_path.Rd | 5 solvebio-2.1.0/solvebio/man/Vault.get_or_create_by_full_path.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.get_personal_vault.Rd | 5 solvebio-2.1.0/solvebio/man/Vault.objects.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.retrieve.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.search.Rd | 4 solvebio-2.1.0/solvebio/man/Vault.update.Rd |only solvebio-2.1.0/solvebio/man/createEnv.Rd |only solvebio-2.1.0/solvebio/man/login.Rd | 4 solvebio-2.1.0/solvebio/tests |only 96 files changed, 708 insertions(+), 325 deletions(-)
Title: A Class of Mixture Models for Ordinal Data
Description: For ordinal rating data, estimate and test models within the family of
CUB models and their extensions (where CUB stands for Combination of a
discrete Uniform and a shifted Binomial distributions). Simulation routines, plotting facilities
and fitting measures are also provided.
Author: Maria Iannario <maria.iannario@unina.it>, Domenico Piccolo
<domenico.piccolo@unina.it>, Rosaria Simone <rosaria.simone@unina.it>
Maintainer: Rosaria Simone <rosaria.simone@unina.it>
Diff between CUB versions 1.1 dated 2017-10-11 and 1.1.1 dated 2017-10-11
CUB-1.1.1/CUB/DESCRIPTION | 6 - CUB-1.1.1/CUB/MD5 | 18 +--- CUB-1.1.1/CUB/R/CUB_package.R | 102 +++++++++++++------------- CUB-1.1.1/CUB/build/vignette.rds |binary CUB-1.1.1/CUB/inst/doc/CUBvignette-knitr.Rnw | 2 CUB-1.1.1/CUB/inst/doc/CUBvignette-knitr.pdf |binary CUB-1.1.1/CUB/man/CUB_package.Rd | 4 - CUB-1.1.1/CUB/vignettes/CUBvignette-knitr.Rnw | 2 CUB-1.1/CUB/inst/doc/CUBvignette.R |only CUB-1.1/CUB/inst/doc/CUBvignette.Rnw |only CUB-1.1/CUB/inst/doc/CUBvignette.pdf |only CUB-1.1/CUB/vignettes/CUBvignette.Rnw |only 12 files changed, 65 insertions(+), 69 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-22 2.4-6
2017-05-03 2.4-5
2016-09-21 2.4-4
2015-05-05 2.4-3
2014-12-17 2.4-2
2014-02-17 2.4-1
2014-02-10 2.4-0
2013-10-03 2.3-1
2013-06-24 2.2-6
2013-05-13 2.2-5
2013-04-18 2.2-3
2013-03-23 2.2-2
2013-01-06 2.2-1
2012-10-30 2.2-0
2012-08-30 2.1-2
2012-01-05 2.0-7
2011-12-10 2.0-6
2011-10-14 2.0-5
2011-08-28 2.0-4
2011-08-13 2.0-3
2011-08-08 2.0-1
2011-08-08 2.0-2
2011-06-26 1.4
2011-06-20 1.3-7
2011-06-19 1.3-6
2011-05-21 1.3-5
2011-05-11 1.3-4
2011-05-04 1.3-3
2011-03-01 1.3-2
2011-02-15 1.3-1
2011-02-08 1.3-0
2010-02-28 1.2-18
2010-02-24 1.2-17
2010-02-19 1.2-16
2009-10-26 1.2-13
2009-10-16 1.2-12
2009-01-13 1.2-4
2008-09-28 1.2-3
2008-08-26 1.2-2
2008-07-20 1.2-0
2007-10-07 1.0
2007-06-11 0.99-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-15 0.4.6
2016-11-15 0.3.1
2015-11-04 0.1.2
Title: Randomization Tests
Description: A collection of randomization tests, data sets and examples. The current version focuses on the description and implementation of a permutation test for testing the continuity assumption of the baseline covariates in the sharp regression discontinuity design (RDD) as in Canay and Kamat (2017) <https://goo.gl/UZFqt7>. More specifically, it allows the user to select a set of covariates and test the aforementioned hypothesis using a permutation test based on the Cramer-von Miss test statistic. Graphical inspection of the empirical CDF and histograms for the variables of interest is also supported in the package.
Author: Mauricio Olivares-Gonzalez [aut, cre],
Ignacio Sarmiento-Barbieri [aut]
Maintainer: Mauricio Olivares-Gonzalez <maurice.olivares@gmail.com>
Diff between RATest versions 0.1.0 dated 2017-08-14 and 0.1.1 dated 2017-10-11
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/RDperm.R | 45 +++++++++++++++++++++++++++++++++++---------- build/vignette.rds |binary inst/doc/RDperm.Rnw | 18 +++++++++++------- inst/doc/RDperm.pdf |binary man/RDperm.Rd | 2 +- vignettes/RDperm.Rnw | 18 +++++++++++------- 8 files changed, 68 insertions(+), 35 deletions(-)
Title: Interface Between GRASS 7 Geographical Information System and R
Description: Interpreted interface between GRASS 7 geographical
information system and R, based on starting R from within the GRASS GIS
environment, or running free-standing R in a temporary GRASS location;
the package provides facilities for using all GRASS commands from the
R command line. This package may not be used for GRASS 6, for which
spgrass6 should be used.
Author: Roger Bivand [cre, aut],
Rainer Krug [ctb],
Markus Neteler [ctb],
Sebastian Jeworutzki [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgrass7 versions 0.1-9 dated 2016-10-07 and 0.1-10 dated 2017-10-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/vect_link.R | 10 +++++++++- 3 files changed, 15 insertions(+), 7 deletions(-)
Title: Bayesian Inference for Multivariate Stochastic Differential
Equations
Description: Implements an MCMC sampler for the posterior distribution of arbitrary time-homogeneous multivariate stochastic differential equation (SDE) models with possibly latent components. The package provides a simple entry point to integrate user-defined models directly with the sampler's C++ code, and parallelizes large portions of the calculations when compiled with 'OpenMP'.
Author: Martin Lysy [aut, cre],
JunYong Tong [aut],
Nigel Delaney [ctb]
Maintainer: Martin Lysy <mlysy@uwaterloo.ca>
Diff between msde versions 1.0 dated 2017-07-08 and 1.0.2 dated 2017-10-11
msde-1.0.2/msde/DESCRIPTION | 15 msde-1.0.2/msde/MD5 | 120 +++---- msde-1.0.2/msde/NAMESPACE | 5 msde-1.0.2/msde/R/RcppExports.R |only msde-1.0.2/msde/R/mou.loglik.R |only msde-1.0.2/msde/R/msde-package.R |only msde-1.0.2/msde/R/sde.diff.R | 19 - msde-1.0.2/msde/R/sde.drift.R | 19 - msde-1.0.2/msde/R/sde.examples.R |only msde-1.0.2/msde/R/sde.init.R | 10 msde-1.0.2/msde/R/sde.is.valid.R | 35 -- msde-1.0.2/msde/R/sde.loglik.R | 24 - msde-1.0.2/msde/R/sde.make.model.R | 332 ++++++++++---------- msde-1.0.2/msde/R/sde.post.R | 70 ++-- msde-1.0.2/msde/R/sde.prior.R | 18 - msde-1.0.2/msde/R/sde.sim.R | 34 -- msde-1.0.2/msde/R/zzz.R | 14 msde-1.0.2/msde/build/vignette.rds |binary msde-1.0.2/msde/inst/doc/msde-exmodels.Rmd | 18 - msde-1.0.2/msde/inst/doc/msde-exmodels.html | 20 - msde-1.0.2/msde/inst/doc/msde-quicktut.Rmd | 2 msde-1.0.2/msde/inst/doc/msde-quicktut.html | 32 - msde-1.0.2/msde/inst/include/LinAlgUtils.h | 32 - msde-1.0.2/msde/inst/include/MissGibbsUpdate.h | 88 ++--- msde-1.0.2/msde/inst/include/ParamVanillaUpdate.h | 44 +- msde-1.0.2/msde/inst/include/biouModel.h |only msde-1.0.2/msde/inst/include/hestModel.h |only msde-1.0.2/msde/inst/include/lotvolModel.h |only msde-1.0.2/msde/inst/include/mcmcUtils.h | 61 --- msde-1.0.2/msde/inst/include/mvnPrior.h |only msde-1.0.2/msde/inst/include/mvnUtils.h | 38 -- msde-1.0.2/msde/inst/include/pgnetModel.h |only msde-1.0.2/msde/inst/include/rngUtils.h |only msde-1.0.2/msde/inst/include/sdeInterface.h |only msde-1.0.2/msde/inst/include/sdeLogLik.h | 35 +- msde-1.0.2/msde/inst/include/sdeMCMC.h | 87 +++-- msde-1.0.2/msde/inst/include/sdePost.h |only msde-1.0.2/msde/inst/include/sdeRUtils.h |only msde-1.0.2/msde/inst/include/sdeSim.h |only msde-1.0.2/msde/inst/include/sdeUtils.h | 41 +- msde-1.0.2/msde/inst/tools |only msde-1.0.2/msde/man/mou.loglik.Rd |only msde-1.0.2/msde/man/msde.Rd | 16 msde-1.0.2/msde/man/sde.diff.Rd | 9 msde-1.0.2/msde/man/sde.drift.Rd | 9 msde-1.0.2/msde/man/sde.examples.Rd |only msde-1.0.2/msde/man/sde.init.Rd | 9 msde-1.0.2/msde/man/sde.loglik.Rd | 9 msde-1.0.2/msde/man/sde.make.model.Rd | 31 - msde-1.0.2/msde/man/sde.post.Rd | 16 msde-1.0.2/msde/man/sde.prior.Rd | 7 msde-1.0.2/msde/man/sde.sim.Rd | 9 msde-1.0.2/msde/man/sde.valid.Rd | 7 msde-1.0.2/msde/src |only msde-1.0.2/msde/tests/testthat/msde-test_debug.R | 9 msde-1.0.2/msde/tests/testthat/msde-testfunctions.R | 4 msde-1.0.2/msde/tests/testthat/test-hest_diag.R | 7 msde-1.0.2/msde/tests/testthat/test-hest_sd.R | 16 msde-1.0.2/msde/tests/testthat/test-hest_var.R | 7 msde-1.0.2/msde/tests/testthat/test-lv_precomp.R |only msde-1.0.2/msde/tests/testthat/test-lv_prior.R | 2 msde-1.0.2/msde/vignettes/msde-exmodels.Rmd | 18 - msde-1.0.2/msde/vignettes/msde-quicktut.Rmd | 2 msde-1.0/msde/R/example.models.R |only msde-1.0/msde/R/msde.R |only msde-1.0/msde/inst/msde |only msde-1.0/msde/man/example.models.Rd |only 67 files changed, 648 insertions(+), 752 deletions(-)
Title: A Hybrid Filter-Wrapper Feature Selection Method
Description: A hybrid method of feature selection which combines both filter and wrapper methods. The first level involves feature reduction based on some of the important filter methods while the second level involves feature subset selection as in a wrapper method. Comparative analysis with the existing feature selection packages shows this package results in higher classification accuracy, reduced processing time and improved data handling capacity.
Author: Yamini Pandari [aut, cre],
Prashanth Thangavel [aut],
Hemanth Senthamaraikannan [aut],
Sivaranjani Jagadeeswaran [aut],
Thirumaalavan Elumalai [aut]
Maintainer: Yamini Pandari <yamini.pandari@latentview.com>
Diff between HybridFS versions 0.1.0 dated 2017-09-25 and 0.1.2 dated 2017-10-11
DESCRIPTION | 23 ++++++++++++++++------- MD5 | 6 +++--- R/HybridFS.R | 10 ++++++---- man/HybridFS.Rd | 8 +++++--- 4 files changed, 30 insertions(+), 17 deletions(-)
Title: Copula Based Bivariate Beta-Binomial Model for Diagnostic Test
Accuracy Studies
Description: Modelling of sensitivity and specificity on their natural scale
using copula based bivariate beta-binomial distribution to yield marginal
mean sensitivity and specificity. The intrinsic negative correlation between
sensitivity and specificity is modelled using a copula function. A forest plot
can be obtained for categorical covariates or for the model with intercept only.
Author: Victoria N Nyaga [aut, cre]
Maintainer: Victoria N Nyaga <victoria.nyaga@outlook.com>
Diff between CopulaDTA versions 0.0.6 dated 2017-10-11 and 0.0.7 dated 2017-10-11
DESCRIPTION | 6 ++--- MD5 | 14 ++++++------- R/traceplot.R | 24 +++++++++++++++++++---- inst/doc/CopulaDTA_Vignette.R | 12 +++++------ inst/doc/CopulaDTA_Vignette.Rmd | 12 +++++------ inst/doc/CopulaDTA_Vignette.html | 40 ++++++++++++++++++++------------------- man/traceplot.cdtafit.Rd | 17 +++++++++++++++- vignettes/CopulaDTA_Vignette.Rmd | 12 +++++------ 8 files changed, 85 insertions(+), 52 deletions(-)
Title: Inference and Prediction in an Illness-Death Model
Description: Newly developed methods for the estimation of several probabilities
in an illness-death model. The package can be used to obtain nonparametric and
semiparametric estimates for: transition probabilities, occupation probabilities,
cumulative incidence function and the sojourn time distributions.
Additionally, it is possible to fit proportional hazards regression models
in each transition of the Illness-Death Model. Several auxiliary
functions are also provided which can be used for marginal
estimation of the survival functions.
Author: Luis Meira-Machado and Marta Sestelo
Maintainer: Marta Sestelo <sestelo@uvigo.es>
Diff between survidm versions 0.1.0 dated 2017-05-27 and 1.0.0 dated 2017-10-11
survidm-0.1.0/survidm/R/tpLDM.R |only survidm-0.1.0/survidm/R/tpPLDM.R |only survidm-1.0.0/survidm/DESCRIPTION | 15 survidm-1.0.0/survidm/MD5 | 43 + survidm-1.0.0/survidm/NAMESPACE | 6 survidm-1.0.0/survidm/R/CIF.R | 4 survidm-1.0.0/survidm/R/coxidm.R |only survidm-1.0.0/survidm/R/plot.survIDM.R | 11 survidm-1.0.0/survidm/R/print.survIDM.R | 7 survidm-1.0.0/survidm/R/sojourn.R | 14 survidm-1.0.0/survidm/R/sojourn_ini.R | 10 survidm-1.0.0/survidm/R/summary.cmm.R |only survidm-1.0.0/survidm/R/summary.survIDM.R | 3 survidm-1.0.0/survidm/R/tpLM.R |only survidm-1.0.0/survidm/R/tpLMAJ.R |only survidm-1.0.0/survidm/R/tpPAJ.R |only survidm-1.0.0/survidm/R/tpPLM.R |only survidm-1.0.0/survidm/R/tpPLMAJ.R |only survidm-1.0.0/survidm/R/tprob.R | 596 +++++++++++++++++---------- survidm-1.0.0/survidm/README.md | 3 survidm-1.0.0/survidm/build/partial.rdb |binary survidm-1.0.0/survidm/man/CIF.Rd | 4 survidm-1.0.0/survidm/man/coxidm.Rd |only survidm-1.0.0/survidm/man/plot.survIDM.Rd | 4 survidm-1.0.0/survidm/man/sojourn.Rd | 14 survidm-1.0.0/survidm/man/summary.cmm.Rd |only survidm-1.0.0/survidm/man/survidm-package.Rd | 3 survidm-1.0.0/survidm/man/tprob.Rd | 36 + 28 files changed, 500 insertions(+), 273 deletions(-)
Title: A Class of Mixture Models for Ordinal Data
Description: For ordinal rating data, estimate and test models within the family of
CUB models and their extensions (where CUB stands for Combination of a
discrete Uniform and a shifted Binomial distributions). Simulation routines, plotting facilities
and fitting measures are also provided.
Author: Maria Iannario <maria.iannario@unina.it>, Domenico Piccolo
<domenico.piccolo@unina.it>, Rosaria Simone <rosaria.simone@unina.it>
Maintainer: Rosaria Simone <rosaria.simone@unina.it>
Diff between CUB versions 1.0 dated 2016-12-23 and 1.1 dated 2017-10-11
DESCRIPTION | 13 MD5 | 433 ++++++++++++------------- NAMESPACE | 146 ++++---- R/CUB.R | 431 ++++++++++++------------- R/CUBE.R | 29 - R/CUB_package.R | 38 +- R/CUSH.R | 174 +++++----- R/GEM.R | 601 ++++++++++++++++------------------ R/IHG.R | 201 +++++------ R/Q2gecub.R | 2 R/Qdue.R | 2 R/betabinomial.R | 114 +++--- R/betabinomialcsi.R | 103 ++--- R/betar.R | 64 +-- R/bitcsi.R | 65 +-- R/bitgama.R | 90 ++--- R/chi2cub.R | 15 R/chi2cub1cov.R | 7 R/chi2cub2cov.R | 5 R/coef.R | 407 +++++++++++++++++++++-- R/cormat.R | 155 ++++----- R/cub0q.R | 255 +++++++------- R/cubevisual.R | 67 ++- R/cubshevisual.R | 68 ++- R/cubvisual.R | 67 ++- R/deltaprob.R | 41 +- R/dissim.R | 46 +- R/ellecub.R | 82 ++-- R/ellegecub.R | 2 R/expcub00.R | 42 +- R/fitted.R | 42 +- R/gini.R | 38 +- R/inibest.R | 1 R/inibestcube.R | 75 ++-- R/inibestcubecov.R | 150 ++++---- R/inibestcubecsi.R | 114 +++--- R/inibestgama.R | 93 ++--- R/iniihg.R | 4 R/laakso.R | 18 - R/logis.R | 63 ++- R/loglikCUB.R | 52 +-- R/loglikCUSH.R | 121 +++---- R/loglikcub0q.R | 46 +- R/loglikcube_1.R | 179 +++++----- R/loglikcubecov.R | 62 +-- R/loglikcubecsi.R | 53 +-- R/loglikcuben.R | 94 ++--- R/loglikcubp0.R | 53 +-- R/loglikcubpq.R | 70 ++-- R/loglikcush00.R | 46 +- R/loglikcushcov.R | 47 +- R/loglikihg_1.R | 23 - R/loglikihgcov.R | 42 +- R/logscore.R | 86 ++--- R/makeplot.R | 81 +--- R/multicub.R | 103 +++++ R/multicube.R | 264 +++++++++------ R/parnames.R | 231 ++++++++++--- R/plotloglikihg.R | 54 +-- R/print.R | 25 + R/probbit.R | 39 +- R/probcub00.R | 56 +-- R/probcub0q.R | 105 +++--- R/probcube.R | 56 +-- R/probcubp0.R | 101 ++--- R/probcubpq.R | 21 - R/probcubshe2.R | 2 R/probcubshe3.R | 5 R/probcush.R | 9 R/probgecub.R | 13 R/probihg.R | 58 +-- R/probihgcovn.R | 12 R/relgoods.R | 8 R/simcub.R | 2 R/simcube.R | 2 R/simcubshe.R | 2 R/simcush.R | 58 +-- R/simihg.R | 4 R/summary.R | 842 ++++++++++++++++++++++++++++++------------------- R/univer.R | 2 R/varcovcub00.R | 116 +++--- R/varcovcub0q.R | 147 ++++---- R/varcovcubecov.R | 296 ++++++++--------- R/varcovcubp0.R | 130 +++---- R/varcovcubpq.R | 158 ++++----- R/varcovgecub.R | 8 R/varmatCUB.R | 330 +++++++++---------- R/varmatCUBE.R | 192 +++++------ R/vcov.R | 82 ++-- build |only data/relgoods.rda |binary data/univer.rda |binary inst |only man/BIC.GEM.Rd | 48 +- man/CUB.Rd | 210 ++++++------ man/CUBE.Rd | 174 +++++----- man/CUB_package.Rd | 126 +++---- man/CUSH.Rd | 92 ++--- man/GEM.Rd | 407 ++++++++++------------- man/Hadprod.Rd | 58 +-- man/IHG.Rd | 144 ++++---- man/Q2gecub.Rd | 38 +- man/Qdue.Rd | 58 +-- man/Quno.Rd | 52 +-- man/Qunogecub.Rd | 42 +- man/auxmat.Rd | 72 ++-- man/betabinomial.Rd | 118 +++--- man/betabinomialcsi.Rd | 105 +++--- man/betar.Rd | 76 ++-- man/bitcsi.Rd | 76 ++-- man/bitgama.Rd | 80 ++-- man/chi2cub.Rd | 97 ++--- man/chi2cub1cov.Rd | 74 ++-- man/chi2cub2cov.Rd | 74 ++-- man/coef.GEM.Rd | 51 +- man/cormat.Rd | 47 +- man/cub00.Rd | 100 ++--- man/cub0q.Rd | 148 ++++---- man/cube000.Rd | 132 +++---- man/cubecov.Rd | 82 ++-- man/cubecsi.Rd | 150 ++++---- man/cubevisual.Rd | 70 ++-- man/cubp0.Rd | 70 ++-- man/cubpq.Rd | 82 ++-- man/cubshe.Rd | 74 ++-- man/cubshevisual.Rd | 79 ++-- man/cubvisual.Rd | 67 ++- man/cush00.Rd | 46 +- man/cushcov.Rd | 52 +-- man/deltaprob.Rd | 47 +- man/dissim.Rd | 51 +- man/effe01.Rd | 50 +- man/effe10.Rd | 52 +-- man/effecube.Rd | 58 +-- man/effecubecsi.Rd | 48 +- man/effecush.Rd | 56 +-- man/effeihg.Rd | 48 +- man/effeihgcov.Rd | 56 +-- man/ellecub.Rd | 86 ++--- man/ellegecub.Rd | 60 +-- man/expcub00.Rd | 66 +-- man/expcube.Rd | 76 ++-- man/fitted.GEM.Rd | 57 +-- man/gecubpqs.Rd | 88 ++--- man/gini.Rd | 51 +- man/ihg00.Rd | 54 +-- man/ihgcov.Rd | 60 +-- man/inibest.Rd | 78 ++-- man/inibestcube.Rd | 64 +-- man/inibestcubecov.Rd | 109 +++--- man/inibestcubecsi.Rd | 111 +++--- man/inibestgama.Rd | 88 ++--- man/inigrid.Rd | 80 ++-- man/iniihg.Rd | 72 ++-- man/kkk.Rd | 40 +- man/laakso.Rd | 55 +-- man/logLik.GEM.Rd | 50 +- man/logis.Rd | 58 +-- man/loglikCUB.Rd | 217 ++++++------ man/loglikCUSH.Rd | 104 +++--- man/loglikcub00.Rd | 46 +- man/loglikcub0q.Rd | 52 +-- man/loglikcube.Rd | 130 +++---- man/loglikcubecov.Rd | 68 +-- man/loglikcubecsi.Rd | 62 +-- man/loglikcuben.Rd | 96 ++--- man/loglikcubp0.Rd | 52 +-- man/loglikcubpq.Rd | 58 +-- man/loglikcubshe.Rd | 54 +-- man/loglikcush00.Rd | 52 +-- man/loglikcushcov.Rd | 52 +-- man/loglikihg.Rd | 97 ++--- man/loglikihgcov.Rd | 54 +-- man/logscore.Rd | 98 ++--- man/makeplot.Rd | 57 +-- man/multicub.Rd | 81 ++-- man/multicube.Rd | 74 ++-- man/parnames.Rd | 50 +- man/plotloglikihg.Rd | 52 +-- man/print.GEM.Rd | 44 +- man/probbit.Rd | 59 +-- man/probcub00.Rd | 76 ++-- man/probcub0q.Rd | 113 +++--- man/probcube.Rd | 82 ++-- man/probcubp0.Rd | 109 +++--- man/probcubpq.Rd | 115 +++--- man/probcubshe1.Rd | 102 ++--- man/probcubshe2.Rd | 106 +++--- man/probcubshe3.Rd | 113 +++--- man/probcush.Rd | 75 ++-- man/probgecub.Rd | 85 ++-- man/probihg.Rd | 64 +-- man/probihgcovn.Rd | 84 ++-- man/relgoods.Rd | 212 ++++++------ man/simcub.Rd | 66 +-- man/simcube.Rd | 74 ++-- man/simcubshe.Rd | 80 ++-- man/simcush.Rd | 68 +-- man/simihg.Rd | 60 +-- man/summary.GEM.Rd | 64 +-- man/univer.Rd | 102 ++--- man/varcovcub00.Rd | 82 ++-- man/varcovcub0q.Rd | 86 ++--- man/varcovcubecov.Rd | 84 ++-- man/varcovcubeexp.Rd | 72 ++-- man/varcovcubeobs.Rd | 72 ++-- man/varcovcubp0.Rd | 72 ++-- man/varcovcubpq.Rd | 78 ++-- man/varcovcubshe.Rd | 74 ++-- man/varcovgecub.Rd | 80 ++-- man/varcub00.Rd | 66 +-- man/varcube.Rd | 74 ++-- man/varmatCUB.Rd | 194 +++++------ man/varmatCUBE.Rd | 142 ++++---- man/vcov.GEM.Rd | 50 +- vignettes |only 216 files changed, 9986 insertions(+), 9090 deletions(-)
Title: Prediction of Amyloid Proteins
Description: Predicts amyloid proteins using random forests trained on the
n-gram encoded peptides. The implemented algorithm can be accessed from
both the command line and shiny-based GUI.
Author: Michal Burdukiewicz [cre, aut],
Piotr Sobczyk [ctb],
Stefan Roediger [ctb]
Maintainer: Michal Burdukiewicz <michalburdukiewicz@gmail.com>
Diff between AmyloGram versions 1.0 dated 2016-09-24 and 1.1 dated 2017-10-11
CHANGELOG |only DESCRIPTION | 14 MD5 | 56 NAMESPACE | 36 R/AmyloGram-package.R | 66 R/AmyloGram_gui.R | 16 R/datasets.R | 72 R/is_protein.R | 24 R/predict.R | 106 R/print.R | 50 R/read_txt.R | 96 R/utils.R | 4 README.md | 85 inst/AmyloGram/ga.js |only inst/AmyloGram/output_format.md |only inst/AmyloGram/prots.txt | 18 inst/AmyloGram/readme.md | 33 inst/AmyloGram/results2.png |only inst/AmyloGram/server.R | 245 inst/AmyloGram/ui.R | 37 inst/AmyloGram/www/shiny_paper.css |15274 ++++++++++++++++++------------------- inst/CITATION | 36 man/AmyloGram-package.Rd | 65 man/AmyloGram_gui.Rd | 30 man/AmyloGram_model.Rd | 33 man/is_protein.Rd | 35 man/pep424.Rd | 41 man/predict.ag_model.Rd | 49 man/print.ag_model.Rd | 41 man/read_txt.Rd | 47 man/spec_sens.Rd | 41 31 files changed, 8324 insertions(+), 8326 deletions(-)
More information about temperatureresponse at CRAN
Permanent link
Title: One-Way Tests in Independent Groups Designs
Description: Performs one-way tests in independent groups designs, pairwise comparisons, graphical approaches, and assess variance homogeneity and normality of data in each group via tests and plots.
Author: Osman Dag [aut, cre], Anil Dolgun [aut], N. Meric Konar [aut]
Maintainer: Osman Dag <osman.dag@hacettepe.edu.tr>
Diff between onewaytests versions 1.4 dated 2017-04-14 and 1.5 dated 2017-10-11
DESCRIPTION | 12 ++++++------ MD5 | 52 ++++++++++++++++++++++++++-------------------------- R/ag.test.R | 9 ++++++--- R/aov.test.R | 9 ++++++--- R/bf.test.R | 8 ++++++-- R/describe.R | 8 ++++++-- R/gplot.R | 10 +++++++--- R/homog.test.R | 8 ++++++-- R/james.test.R | 9 ++++++--- R/kw.test.R | 8 ++++++-- R/nor.test.R | 20 +++++++++++++------- R/paircomp.R | 8 ++++---- R/paircomp.jt.R | 8 ++++---- R/welch.test.R | 9 ++++++--- man/ag.test.Rd | 8 +++++--- man/aov.test.Rd | 2 ++ man/bf.test.Rd | 4 ++++ man/describe.Rd | 2 ++ man/gplot.Rd | 4 +++- man/homog.test.Rd | 2 ++ man/james.test.Rd | 2 ++ man/kw.test.Rd | 2 ++ man/nor.test.Rd | 2 ++ man/onewaytests.Rd | 4 +--- man/paircomp.Rd | 2 ++ man/paircomp.jt.Rd | 2 ++ man/welch.test.Rd | 2 ++ 27 files changed, 139 insertions(+), 77 deletions(-)
Title: Reads 'SPSS' and 'SAS' Files from ASCII Data Files (.txt) and
Setup Files (.sps or .sas)
Description: Lets you open an 'SPSS' or 'SAS' data file using a .txt file that has the data and a .sps or .sas file with setup instructions. This will only run in a txt-sps or txt-sas pair in which the setup file contains instructions to open that text file. It will NOT open other text files, .sav, .por, or 'SAS' files.
Author: Jacob Kaplan [aut, cre]
Maintainer: Jacob Kaplan <jkkaplan6@gmail.com>
Diff between asciiSetupReader versions 1.0 dated 2017-09-07 and 1.1 dated 2017-10-11
DESCRIPTION | 6 +-- MD5 | 18 ++++----- R/hello.R | 21 ++++------- R/helper.R | 57 +++++++++++++++++++++++++----- build/vignette.rds |binary inst/doc/Introduction_to_asciiReader.R | 12 +++--- inst/doc/Introduction_to_asciiReader.Rmd | 12 +++--- inst/doc/Introduction_to_asciiReader.html | 16 ++++---- man/spss_ascii_reader.Rd | 10 ++--- vignettes/Introduction_to_asciiReader.Rmd | 12 +++--- 10 files changed, 100 insertions(+), 64 deletions(-)
More information about asciiSetupReader at CRAN
Permanent link
Title: Subnetwork Integration for Multi-Modal Signatures
Description: Algorithms to create prognostic biomarkers using biological networks.
Author: Syed Haider [aut, cre], Paul C. Boutros [aut], Michal Grzadkowski [ctb]
Maintainer: Syed Haider <Syed.Haider@oicr.on.ca>
Diff between SIMMS versions 1.1.0 dated 2017-09-06 and 1.1.1 dated 2017-10-11
DESCRIPTION | 14 MD5 | 12 NAMESPACE | 5 NEWS | 10 R/create.classifier.multivariate.R | 73 +++ inst/doc/Using-SIMMS.html | 665 ++++++++++++++-------------------- man/create.classifier.multivariate.Rd | 8 7 files changed, 372 insertions(+), 415 deletions(-)
Title: Species Distribution Modelling Playground
Description: Functions provided by this pedagogic package allow to compute models with two popular machine learning approaches, BRT (Boosted Regression Trees) and MaxEnt (Maximum Entropy) applied on sets of marine biological and environmental data. They include the possibility of managing the main parameters for the construction of the models. Classic tools to evaluate model performance are provided (Area Under the Curve, omission rate and confusion matrix, map standard deviation) and are completed with tools to perform null models. The biological dataset includes original occurrences of two species of the class Echinoidea (sea urchins) present on the Kerguelen Plateau and that show contrasted ecological niches. The environmental dataset includes the corresponding statistics for 15 abiotic and biotic descriptors summarized for the Kerguelen Plateau and for different periods in a raster format. The package can be used for practicals to teach and learn the basics of species distribution modelling. Maps of potential distribution can be produced based on the example data included in the package, which brings prior observations of the influence of spatial and temporal heterogeneities on modelling performances. The user can also provide his own datasets to use the modelling functions.
Author: Guillaumot Charlene [aut, cre],
Martin Alexis [aut],
Eleaume Marc [aut],
Saucede Thomas [aut]
Maintainer: Guillaumot Charlene <charleneguillaumot21@gmail.com>
Diff between SDMPlay versions 1.0 dated 2016-08-04 and 1.2 dated 2017-10-11
SDMPlay-1.0/SDMPlay/inst/extdata/pred2000.grd |only SDMPlay-1.0/SDMPlay/inst/extdata/pred2000.gri |only SDMPlay-1.0/SDMPlay/inst/java |only SDMPlay-1.2/SDMPlay/DESCRIPTION | 23 ++-- SDMPlay-1.2/SDMPlay/MD5 | 50 +++++----- SDMPlay-1.2/SDMPlay/R/Environmental_data_1965_1974_description.R | 2 SDMPlay-1.2/SDMPlay/R/Environmental_data_2005_2012_description.R | 2 SDMPlay-1.2/SDMPlay/R/Environmental_data_2200_A1B_description.R | 2 SDMPlay-1.2/SDMPlay/R/SDMtab.R | 2 SDMPlay-1.2/SDMPlay/R/compute.brt.R | 21 ---- SDMPlay-1.2/SDMPlay/R/compute.maxent.R | 25 +---- SDMPlay-1.2/SDMPlay/R/null.model.R | 2 SDMPlay-1.2/SDMPlay/build |only SDMPlay-1.2/SDMPlay/inst/doc |only SDMPlay-1.2/SDMPlay/inst/vignette_data |only SDMPlay-1.2/SDMPlay/man/SDMdata.quality.Rd | 1 SDMPlay-1.2/SDMPlay/man/SDMeval.Rd | 1 SDMPlay-1.2/SDMPlay/man/SDMtab.Rd | 1 SDMPlay-1.2/SDMPlay/man/brisaster.antarcticus.Rd | 1 SDMPlay-1.2/SDMPlay/man/compute.brt.Rd | 21 ---- SDMPlay-1.2/SDMPlay/man/compute.maxent.Rd | 24 ---- SDMPlay-1.2/SDMPlay/man/ctenocidaris.nutrix.Rd | 1 SDMPlay-1.2/SDMPlay/man/delim.area.Rd | 1 SDMPlay-1.2/SDMPlay/man/null.model.Rd | 3 SDMPlay-1.2/SDMPlay/man/predictors1965_1974.Rd | 3 SDMPlay-1.2/SDMPlay/man/predictors2005_2012.Rd | 3 SDMPlay-1.2/SDMPlay/man/predictors2200AIB.Rd | 3 SDMPlay-1.2/SDMPlay/vignettes |only 28 files changed, 65 insertions(+), 127 deletions(-)
Title: Response Probability Functions
Description: The purpose of this package is to factor out logic and math common
to Item Factor Analysis fitting, diagnostics, and analysis. It is
envisioned as core support code suitable for more specialized IRT packages
to build upon. Complete access to optimized C functions are made available
with R_RegisterCCallable().
Author: Joshua Pritikin [cre, aut],
Jonathan Weeks [ctb],
Li Cai [ctb],
Carrie Houts [ctb],
Phil Chalmers [ctb],
Michael D. Hunter [ctb],
Carl F. Falk [ctb]
Maintainer: Joshua Pritikin <jpritikin@pobox.com>
Diff between rpf versions 0.53 dated 2016-06-28 and 0.55 dated 2017-10-11
DESCRIPTION | 10 +- MD5 | 182 +++++++++++++++++++++---------------------- R/classes.R | 27 +----- R/dataframe.R | 2 R/diagnose.R | 4 R/drm.R | 1 R/flexmirt.R | 5 - R/grm.R | 1 R/lmp.R | 1 R/mcm.R | 1 R/sample.R | 1 R/util.R | 2 build/vignette.rds |binary inst/doc/customitem.html | 2 inst/doc/diagnostics.html | 44 +++++----- inst/doc/flexmirt-plots.html | 6 - inst/include/libifa-rpf.h | 2 man/ChenThissen1997.Rd | 1 man/EAPscores.Rd | 3 man/LSAT6.Rd | 7 - man/LSAT7.Rd | 7 - man/SitemFit.Rd | 1 man/SitemFit1.Rd | 1 man/as.IFAgroup.Rd | 1 man/bestToOmit.Rd | 1 man/compressDataFrame.Rd | 1 man/crosstabTest.Rd | 1 man/expandDataFrame.Rd | 1 man/fromFactorLoading.Rd | 1 man/fromFactorThreshold.Rd | 1 man/itemOutcomeBySumScore.Rd | 1 man/kct.Rd | 1 man/logit.Rd | 1 man/multinomialFit.Rd | 1 man/observedSumScore.Rd | 1 man/omitItems.Rd | 1 man/omitMostMissing.Rd | 1 man/orderCompletely.Rd | 1 man/ordinal.gamma.Rd | 1 man/ptw2011.gof.test.Rd | 1 man/read.flexmirt.Rd | 1 man/rpf.1dim-class.Rd | 1 man/rpf.1dim.drm-class.Rd | 1 man/rpf.1dim.fit.Rd | 1 man/rpf.1dim.graded-class.Rd | 1 man/rpf.1dim.grm-class.Rd | 1 man/rpf.1dim.lmp-class.Rd | 1 man/rpf.1dim.moment.Rd | 1 man/rpf.1dim.residual.Rd | 1 man/rpf.1dim.stdresidual.Rd | 1 man/rpf.base-class.Rd | 5 - man/rpf.dLL.Rd | 3 man/rpf.dTheta.Rd | 5 - man/rpf.drm.Rd | 1 man/rpf.grm.Rd | 1 man/rpf.id_of.Rd | 1 man/rpf.info.Rd | 1 man/rpf.introduction.Rd | 7 + man/rpf.lmp.Rd | 1 man/rpf.logprob.Rd | 5 - man/rpf.mcm.Rd | 1 man/rpf.mdim-class.Rd | 1 man/rpf.mdim.drm-class.Rd | 1 man/rpf.mdim.graded-class.Rd | 1 man/rpf.mdim.grm-class.Rd | 1 man/rpf.mdim.mcm-class.Rd | 1 man/rpf.mdim.nrm-class.Rd | 1 man/rpf.mean.info.Rd | 1 man/rpf.mean.info1.Rd | 1 man/rpf.modify.Rd | 1 man/rpf.nrm.Rd | 1 man/rpf.numParam.Rd | 1 man/rpf.numSpec.Rd | 1 man/rpf.ogive.Rd | 1 man/rpf.paramInfo.Rd | 1 man/rpf.prob.Rd | 17 +--- man/rpf.rescale.Rd | 3 man/rpf.rparam.Rd | 7 - man/rpf.sample.Rd | 1 man/science.Rd | 1 man/stripData.Rd | 1 man/sumScoreEAP.Rd | 1 man/sumScoreEAPTest.Rd | 1 man/tabulateRows.Rd | 1 man/toFactorLoading.Rd | 1 man/toFactorThreshold.Rd | 1 man/write.flexmirt.Rd | 1 src/ba81quad.h | 7 - src/diagnose.cpp | 4 src/eap.cpp | 2 src/glue.cpp | 1 src/libifa-rpf.cpp | 4 92 files changed, 176 insertions(+), 261 deletions(-)
Title: An Interface for MATLAB using System Calls
Description: Provides users to call MATLAB from using the "system" command.
Allows users to submit lines of code or MATLAB m files.
This is in comparison to 'R.matlab', which creates a MATLAB server.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between matlabr versions 1.1.3 dated 2016-05-25 and 1.4.3 dated 2017-10-11
matlabr-1.1.3/matlabr/inst |only matlabr-1.4.3/matlabr/DESCRIPTION | 19 ++- matlabr-1.4.3/matlabr/MD5 | 26 ++-- matlabr-1.4.3/matlabr/NEWS.md |only matlabr-1.4.3/matlabr/R/matlab_script.R | 134 ++++++++++------------- matlabr-1.4.3/matlabr/R/rvec_to_matlab.R |only matlabr-1.4.3/matlabr/R/rvec_to_matlabcell.R | 13 +- matlabr-1.4.3/matlabr/README.md |only matlabr-1.4.3/matlabr/man/get_matlab.Rd | 15 ++ matlabr-1.4.3/matlabr/man/have_matlab.Rd | 9 - matlabr-1.4.3/matlabr/man/rmat_to_matlab_mat.Rd | 1 matlabr-1.4.3/matlabr/man/run_matlab_code.Rd | 1 matlabr-1.4.3/matlabr/man/run_matlab_script.Rd | 12 +- matlabr-1.4.3/matlabr/man/rvec_to_matlab.Rd | 8 - matlabr-1.4.3/matlabr/man/rvec_to_matlabcell.Rd | 6 - matlabr-1.4.3/matlabr/man/rvec_to_matlabclist.Rd | 3 16 files changed, 133 insertions(+), 114 deletions(-)
Title: Example Data from the Multi-Modal MRI 'Reproducibility' Resource
Description: Multi-modal magnetic resonance imaging ('MRI')
data from the 'Kirby21' 'reproducibility' study
<https://www.nitrc.org/projects/multimodal/>, including functional
and structural imaging.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between kirby21.base versions 1.5.1.1 dated 2017-03-02 and 1.6.0 dated 2017-10-11
DESCRIPTION | 15 +++++++------- MD5 | 15 +++++++------- NEWS.md |only R/download_kirby21_data.R | 45 +++++++++++++++++++++++++++++++++++------- R/get_image_filenames.R | 11 +++++++--- R/subject_id_to_visit_id.R | 2 - man/download_kirby21_data.Rd | 6 ++++- man/get_image_filenames_df.Rd | 5 +++- man/subject_id_to_visit_id.Rd | 2 - 9 files changed, 73 insertions(+), 28 deletions(-)
Title: Copula Based Bivariate Beta-Binomial Model for Diagnostic Test
Accuracy Studies
Description: Modelling of sensitivity and specificity on their natural scale
using copula based bivariate beta-binomial distribution to yield marginal
mean sensitivity and specificity. The intrinsic negative correlation between
sensitivity and specificity is modelled using a copula function. A forest plot
can be obtained for categorical covariates or for the model with intercept only.
Author: Victoria N Nyaga [aut, cre]
Maintainer: Victoria N Nyaga <victoria.nyaga@outlook.com>
Diff between CopulaDTA versions 0.0.5 dated 2017-02-23 and 0.0.6 dated 2017-10-11
DESCRIPTION | 16 +- MD5 | 23 +-- R/model.R | 14 + R/plot.R | 10 - R/print.R | 12 + R/summary.R | 12 + build/vignette.rds |binary inst/doc/CopulaDTA_Vignette.R | 70 +++++---- inst/doc/CopulaDTA_Vignette.Rmd | 78 +++++----- inst/doc/CopulaDTA_Vignette.html | 295 ++++++++++++++++++++++----------------- man/cdtamodel.Rd | 4 vignettes/CopulaDTA_Vignette.Rmd | 78 +++++----- vignettes/CopulaDTA_Vignette.md |only 13 files changed, 354 insertions(+), 258 deletions(-)
Title: IPEA Common Functions
Description: The most used functions on IPEA (Instituto de Pesquisa Economica Aplicada).
Most of functions deal with brazilian names.
It can guess the women single's name, extract prepositions or extract the first name.
Author: Gustavo Coelho [aut, cre],
Lucas Mation [aut],
Daniel Lima [ctb],
Igor Noberto [ctb]
Maintainer: Gustavo Coelho <gustavo.coelho@ipea.gov.br>
Diff between utilsIPEA versions 0.0.2 dated 2017-10-06 and 0.0.3 dated 2017-10-11
DESCRIPTION | 8 +-- MD5 | 22 +++++---- NAMESPACE | 2 NEWS.md |only R/data.R | 2 R/extrai_nome_proprio.R | 2 R/text_functions.R | 72 +++++++++++++++++--------------- README.md | 10 ---- man/abrevia_nome_meio.Rd |only man/base_nomes.Rd | 2 man/extrai_NomeProprio.Rd | 2 man/remove_preposicao_nomes.Rd | 2 tests/testthat/test_abrevia_nome_meio.R | 4 - 13 files changed, 66 insertions(+), 62 deletions(-)
Title: Datasets for 'spatstat'
Description: Contains all the datasets for the 'spatstat' package.
Author: Adrian Baddeley [aut, cre],
Rolf Turner [aut],
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.data versions 1.1-0 dated 2017-09-21 and 1.1-1 dated 2017-10-11
DESCRIPTION | 8 +-- MD5 | 116 +++++++++++++++++++++++----------------------- data/Kovesi.rda |binary data/amacrine.rda |binary data/anemones.rda |binary data/ants.rda |binary data/austates.rda |binary data/bdspots.rda |binary data/bei.rda |binary data/betacells.rda |binary data/bramblecanes.rda |binary data/bronzefilter.rda |binary data/cells.rda |binary data/chicago.rda |binary data/chorley.rda |binary data/clmfires.rda |binary data/copper.rda |binary data/demohyper.rda |binary data/demopat.rda |binary data/dendrite.rda |binary data/finpines.rda |binary data/flu.rda |binary data/ganglia.rda |binary data/gordon.rda |binary data/gorillas.rda |binary data/hamster.rda |binary data/heather.rda |binary data/humberside.rda |binary data/hyytiala.rda |binary data/japanesepines.rda |binary data/lansing.rda |binary data/letterR.rda |binary data/longleaf.rda |binary data/mucosa.rda |binary data/murchison.rda |binary data/nbfires.rda |binary data/nztrees.rda |binary data/osteo.rda |binary data/paracou.rda |binary data/ponderosa.rda |binary data/pyramidal.rda |binary data/redwood.rda |binary data/redwood3.rda |binary data/redwoodfull.rda |binary data/residualspaper.rda |binary data/shapley.rda |binary data/simba.rda |binary data/simdat.rda |binary data/simplenet.rda |binary data/spiders.rda |binary data/sporophores.rda |binary data/spruces.rda |binary data/swedishpines.rda |binary data/urkiola.rda |binary data/vesicles.rda |binary data/waka.rda |binary data/waterstriders.rda |binary inst/doc/packagesizes.txt | 2 man/vesicles.Rd | 7 +- 59 files changed, 68 insertions(+), 65 deletions(-)
Title: Search 'Vertnet', a 'Database' of Vertebrate Specimen Records
Description: Retrieve, map and summarize data from the 'VertNet.org' archives.
Functions allow searching by many parameters, including 'taxonomic' names,
places, and dates. In addition, there is an interface for conducting spatially
delimited searches, and another for requesting large 'datasets' via email.
Author: Scott Chamberlain [aut, cre], Chris Ray [aut], Vijay Barve [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rvertnet versions 0.6.0 dated 2017-08-15 and 0.6.2 dated 2017-10-11
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 12 +++++++++++- R/vert_id.R | 16 +++++++++++----- R/zzz.R | 15 +++++---------- build/vignette.rds |binary inst/extdata |only man/vert_id.Rd | 11 +++++++++-- 8 files changed, 46 insertions(+), 27 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad
Sanderson) that aims towards a good balance between speed and ease of use. Integer,
floating point and complex numbers are supported, as well as a subset of
trigonometric and statistics functions. Various matrix decompositions are
provided through optional integration with LAPACK and ATLAS libraries.
The 'RcppArmadillo' package includes the header files from the templated
'Armadillo' library. Thus users do not need to install 'Armadillo' itself in
order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is
licensed under Apache License 2; previous releases were under licensed as
MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that;
'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under
the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Note that
Armadillo requires a fairly recent compiler; for the g++ family at least
version 4.6.* is required.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates and Binxiang Ni
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 0.7.960.1.2 dated 2017-08-29 and 0.8.100.1.0 dated 2017-10-11
RcppArmadillo-0.7.960.1.2/RcppArmadillo/vignettes/RcppArmadillo-sparseMatrix.Rnw |only RcppArmadillo-0.8.100.1.0/RcppArmadillo/ChangeLog | 42 RcppArmadillo-0.8.100.1.0/RcppArmadillo/DESCRIPTION | 11 RcppArmadillo-0.8.100.1.0/RcppArmadillo/MD5 | 197 +- RcppArmadillo-0.8.100.1.0/RcppArmadillo/build/vignette.rds |binary RcppArmadillo-0.8.100.1.0/RcppArmadillo/cleanup | 4 RcppArmadillo-0.8.100.1.0/RcppArmadillo/configure | 20 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/NEWS.Rd | 31 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/doc/RcppArmadillo-intro.pdf |binary RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.R |only RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.Rmd |only RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/doc/RcppArmadillo-sparseMatrix.pdf |only RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/doc/RcppArmadillo-unitTests.pdf |binary RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/RcppArmadilloAs.h | 203 -- RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/RcppArmadilloConfig.h | 14 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/RcppArmadilloWrap.h | 5 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo | 5 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/Col_bones.hpp | 7 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/Col_meat.hpp | 137 - RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/Cube_bones.hpp | 7 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/Cube_meat.hpp | 158 + RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/MapMat_bones.hpp |only RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/MapMat_meat.hpp |only RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/Mat_bones.hpp | 24 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/Mat_meat.hpp | 399 ++-- RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/Proxy.hpp | 46 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/Row_bones.hpp | 5 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/Row_meat.hpp | 95 - RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpCol_bones.hpp | 3 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpCol_meat.hpp | 96 - RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_bones.hpp | 152 + RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_iterators_meat.hpp | 3 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpMat_meat.hpp | 901 +++++++--- RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpProxy.hpp | 63 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpRow_bones.hpp | 3 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpRow_meat.hpp | 55 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_bones.hpp | 24 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_iterators_meat.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpSubview_meat.hpp | 133 - RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/SpValProxy_bones.hpp | 8 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/arma_forward.hpp | 23 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/arma_version.hpp | 6 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/auxlib_meat.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp | 26 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/config.hpp.cmake | 26 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/debug.hpp | 106 - RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/def_hdf5.hpp | 6 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/diskio_bones.hpp | 8 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/diskio_meat.hpp | 478 +---- RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/field_meat.hpp | 22 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_chol.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_diagvec.hpp | 13 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_eig_gen.hpp | 8 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_eig_pair.hpp | 8 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_eig_sym.hpp | 8 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_eigs_gen.hpp | 8 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_eigs_sym.hpp | 7 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_expmat.hpp | 4 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_kmeans.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_logmat.hpp | 6 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_lu.hpp | 10 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_misc.hpp | 17 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_polyfit.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_princomp.hpp | 20 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_qr.hpp | 8 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_schur.hpp | 8 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_spsolve.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_sqrtmat.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_svd.hpp | 16 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_svds.hpp | 12 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/fn_syl_lyap.hpp | 4 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/glue_affmul_bones.hpp |only RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/glue_affmul_meat.hpp |only RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/glue_conv_meat.hpp | 96 + RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/glue_polyfit_meat.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/glue_solve_meat.hpp | 4 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/glue_times_meat.hpp | 6 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/gmm_diag_meat.hpp | 94 - RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/gmm_full_meat.hpp | 88 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/hdf5_misc.hpp | 39 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/include_hdf5.hpp | 1 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_chol_meat.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_expmat_meat.hpp | 4 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_inv_meat.hpp | 8 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_logmat_meat.hpp | 6 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_orth_null_meat.hpp | 4 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_pinv_meat.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_princomp_meat.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_sort_index_meat.hpp | 4 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_sqrtmat_meat.hpp | 6 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_sum_meat.hpp | 12 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/op_unique_meat.hpp | 4 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/operator_ostream.hpp | 42 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/sp_auxlib_meat.hpp | 12 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/spdiagview_bones.hpp | 30 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/spdiagview_meat.hpp | 74 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/spop_misc_bones.hpp | 10 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/spop_misc_meat.hpp | 64 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/subview_field_meat.hpp | 12 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/traits.hpp | 10 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/typedef_mat.hpp | 12 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/unwrap.hpp | 2 RcppArmadillo-0.8.100.1.0/RcppArmadillo/inst/include/armadillo_bits/unwrap_spmat.hpp | 6 RcppArmadillo-0.8.100.1.0/RcppArmadillo/vignettes/RcppArmadillo-sparseMatrix.Rmd |only 104 files changed, 2756 insertions(+), 1625 deletions(-)
Title: 'd3.js' Utilities for R
Description: Helper functions for using 'd3.js' in R.
Author: Mike Bostock [aut, cph] (d3.js library in htmlwidgets/lib,
http://d3js.org),
Kent Russell [aut, cre] (R interface),
Gregor Aisch [aut, cph] (d3-jetpack creator,
https://github.com/gka/d3-jetpack),
Adam Pearce [aut] (core contributor to d3-jetpack),
Ben Ortiz [ctb]
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between d3r versions 0.6.9 dated 2017-08-21 and 0.7.0 dated 2017-10-11
DESCRIPTION | 8 MD5 | 19 NEWS.md | 5 R/dependencies.R | 8 inst/www/d3/d3-jetpack/LICENSE | 55 - inst/www/d3/d3-jetpack/README.md | 667 ++++++++++----------- inst/www/d3/d3-jetpack/dist/d3-jetpack.js | 940 +++++++++++++++--------------- inst/www/d3/d3-jetpack/package.json |only inst/www/d3/v4/API.md | 58 + inst/www/d3/v4/dist/d3.min.js | 4 tests/testthat/test_deps.R | 8 11 files changed, 907 insertions(+), 865 deletions(-)
Title: Conditional Visualization for Statistical Models
Description: Exploring fitted models by interactively taking 2-D and 3-D
sections in data space.
Author: Mark O'Connell [aut, cre],
Catherine Hurley [aut],
Katarina Domijan [aut],
Achim Zeileis [ctb] (spineplot, see copied.R),
R Core Team [ctb] (barplot, see copied.R)
Maintainer: Mark O'Connell <mark_ajoc@yahoo.ie>
Diff between condvis versions 0.4-1 dated 2016-10-17 and 0.4-2 dated 2017-10-11
DESCRIPTION | 20 ++++++++++---------- MD5 | 33 +++++++++++++++++---------------- NEWS | 4 ++++ R/arrangeC.R | 5 +++++ R/ceplot.R | 7 ++++++- R/cont2color.R | 2 +- R/plotxc.R | 5 +++++ R/plotxs.R | 5 +++++ R/savingby2d.R | 5 +++++ R/similarityweight.R | 5 +++++ inst |only man/arrangeC.Rd | 7 +++++++ man/ceplot.Rd | 8 +++++++- man/condvis-package.Rd | 13 ++++++++++--- man/plotxc.Rd | 6 ++++++ man/plotxs.Rd | 6 ++++++ man/savingby2d.Rd | 6 ++++++ man/similarityweight.Rd | 6 ++++++ 18 files changed, 111 insertions(+), 32 deletions(-)