Title: Filter Methods for Parameter Estimation in Linear Regression
Models
Description: We present a method based on filtering algorithms to estimate the parameters of linear regressions, i.e. the coefficients and the variance of the error term. The proposed algorithm makes use of Particle Filters following Ristic, B., Arulampalam, S., Gordon, N. (2004, ISBN: 158053631X) resampling methods.
Author: Christian Llano Robayo [aut, cre],
Nazrul Shaikh [aut]
Maintainer: Christian Llano Robayo <cxl985@miami.edu>
Diff between LMfilteR versions 0.1.0 dated 2017-09-24 and 0.1.1 dated 2017-10-12
DESCRIPTION | 6 +-- MD5 | 7 ++- NEWS.md |only R/PF_lm.R | 107 ++++++++++++++++++++++++++++++----------------------------- man/PF_lm.Rd | 6 ++- 5 files changed, 68 insertions(+), 58 deletions(-)
Title: Plotting Field Plans for Agricultural Experiments
Description: A function for plotting maps of agricultural field experiments that
are laid out in grids.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between desplot versions 1.2 dated 2017-07-13 and 1.3 dated 2017-10-12
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/desplot.R | 23 ++++++++++++++++++++--- build/vignette.rds |binary inst/doc/desplot_examples.html | 38 ++++++++++++++++++++------------------ man/desplot.Rd | 11 +++-------- tests/testthat/test_desplot.R | 34 +++++++++++++++++++++------------- 7 files changed, 74 insertions(+), 52 deletions(-)
Title: Chordalysis R Package
Description: Learning the structure of graphical models from datasets with thousands of variables.
More information about the research papers detailing the theory behind Chordalysis is available at
<http://www.francois-petitjean.com/Research> (KDD 2016, SDM 2015, ICDM 2014, ICDM 2013).
The R package development site is <https://github.com/HerrmannM/Monash-ChoR>.
Author: François Petitjean [aut],
Matthieu Herrmann [aut, com, cre],
Christoph Bergmeir [ctb]
Maintainer: Matthieu Herrmann <matthieu.herrmann@monash.edu>
Diff between ChoR versions 0.0-2 dated 2017-10-06 and 0.0-3 dated 2017-10-12
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 28 ---------------------------- R/onLoad.R | 6 ++++-- inst/java/choR.jar |binary java/choR.jar |binary 6 files changed, 14 insertions(+), 40 deletions(-)
Title: SEC Filings Access
Description: A set of methods to access and parse live filing information from the
U.S. Securities and Exchange Commission (SEC - <https://sec.gov>) including
company and fund filings along with all associated metadata.
Author: Micah J Waldstein [aut, cre]
Maintainer: Micah J Waldstein <micah@waldste.in>
Diff between edgarWebR versions 0.1.1 dated 2017-08-20 and 0.2.0 dated 2017-10-12
DESCRIPTION | 14 ++-- MD5 | 91 +++++++++++++++++++----------- NAMESPACE | 12 +++ R/browse_edgar.R | 10 +-- R/company_filings.R | 1 R/company_information.R | 1 R/filing_details.R | 24 +++++-- R/filing_documents.R | 15 +++- R/filing_filers.R | 16 +++-- R/filing_funds.R | 15 +++- R/filing_information.R | 15 +++- R/fund_search.R | 7 +- R/parse_filing.R |only R/parse_submission.R |only R/utils.R |only README.md | 48 ++------------- build/vignette.rds |binary inst/doc/edgarWebR.R | 19 ------ inst/doc/edgarWebR.Rmd | 9 ++ inst/doc/edgarWebR.html | 4 - inst/doc/parsing.R |only inst/doc/parsing.Rmd |only inst/doc/parsing.html |only man/filing_details.Rd | 6 + man/filing_documents.Rd | 6 + man/filing_filers.Rd | 6 + man/filing_funds.Rd | 6 + man/filing_information.Rd | 6 + man/parse_filing.Rd |only man/parse_submission.Rd |only tests/cache |only tests/testthat.R | 2 tests/testthat/helper_mock.R |only tests/testthat/test_browse_edgar.R | 9 +- tests/testthat/test_company_details.R | 30 ++++----- tests/testthat/test_company_filings.R | 18 +++-- tests/testthat/test_company_information.R | 2 tests/testthat/test_filing_details.R | 59 +++++++++---------- tests/testthat/test_filing_documents.R | 45 +++++--------- tests/testthat/test_filing_filers.R | 70 +++++++++-------------- tests/testthat/test_filing_funds.R | 61 ++++++++------------ tests/testthat/test_filing_information.R | 71 +++++++++-------------- tests/testthat/test_fund_search.R | 22 +++---- tests/testthat/test_parse_filing.R |only tests/testthat/test_parse_submission.R |only vignettes/edgarWebR.Rmd | 9 ++ vignettes/parsing.Rmd |only 47 files changed, 385 insertions(+), 344 deletions(-)
Title: Wrappers for 'tidyr::gather()' and 'tidyr::spread()'
Description: Supplies deliberately verbose wrappers for 'tidyr::gather()' and 'tidyr::spread()', and an explanatory vignette. Useful for training and for enforcing preconditions.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between cdata versions 0.1.5 dated 2017-07-04 and 0.1.6 dated 2017-10-12
DESCRIPTION | 22 + MD5 | 28 +- NAMESPACE | 3 NEWS.md | 10 R/ColumnSelector.R |only R/RowsColumns.R | 77 ++--- R/package.R | 5 README.md | 580 ++++++++++++++++++++++++++++++++++++++++++- build/vignette.rds |binary inst/doc/RowsAndColumns.R | 2 inst/doc/RowsAndColumns.Rmd | 2 inst/doc/RowsAndColumns.html | 6 man/grepdf.Rd |only man/moveValuesToColumns.Rd | 10 man/moveValuesToRows.Rd | 8 vignettes/RowsAndColumns.Rmd | 2 16 files changed, 674 insertions(+), 81 deletions(-)
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.
Author: Rahul Satija [aut],
Andrew Butler [aut],
Paul Hoffman [aut, cre],
Jeff Farrell [ctb],
Shiwei Zheng [ctb],
Christoph Hafemeister [ctb],
Patrick Roelli [ctb]
Maintainer: Paul Hoffman <seuratpackage@gmail.com>
Diff between Seurat versions 2.0.1 dated 2017-08-22 and 2.1.0 dated 2017-10-12
DESCRIPTION | 18 MD5 | 71 +-- NAMESPACE | 8 NEWS.md | 15 R/cluster_determination.R | 11 R/differential_expression.R | 616 +++++++++++++++++++++------- R/dimensional_reduction.R | 33 + R/multi_modal.R | 53 ++ R/plotting.R | 25 - R/plotting_internal.R | 7 R/preprocessing.R | 21 R/preprocessing_internal.R | 37 + R/snn.R | 44 +- README.md | 6 man/CollapseSpeciesExpressionMatrix.Rd |only man/DESeq2DETest.Rd |only man/DiffExpTest.Rd | 8 man/DiffTTest.Rd | 8 man/DimHeatmap.Rd | 5 man/DimPlot.Rd | 4 man/DoHeatmap.Rd | 4 man/FindAllMarkers.Rd | 55 +- man/FindAllMarkersNode.Rd | 12 man/FindConservedMarkers.Rd | 5 man/FindMarkers.Rd | 73 ++- man/FindMarkersNode.Rd | 33 + man/MASTDETest.Rd |only man/MarkerTest.Rd | 8 man/NegBinomDETest.Rd | 5 man/NegBinomRegDETest.Rd | 5 man/PoissonDETest.Rd | 4 man/RunCCA.Rd | 4 man/SetAssayData.Rd | 5 man/TobitTest.Rd | 8 man/WilcoxDETest.Rd |only tests/testthat/test_cluster_determination.R |only tests/testthat/test_preprocessing.R | 47 ++ tests/testthat/test_seurat_object.R | 12 tests/testthat/test_snn.R | 4 39 files changed, 989 insertions(+), 285 deletions(-)
Title: Visualizing and Analyzing Mass Spectrometry Related Data in
Proteomics
Description: Helps with quality checks, visualizations
and analysis of mass spectrometry data, coming from proteomics
experiments. The package is developed, tested and used at the Functional
Genomics Center Zurich. We use this package mainly for prototyping,
teaching, and having fun with proteomics data. But it can also be
used to do data analysis for small scale data sets.
Author: Christian Panse [aut, cre] (0000-0003-1975-3064),
Jonas Grossmann [aut],
Simon Barkow-Oesterreicher [ctb]
Maintainer: Christian Panse <cp@fgcz.ethz.ch>
Diff between protViz versions 0.2.31 dated 2017-05-26 and 0.2.37 dated 2017-10-12
protViz-0.2.31/protViz/data/sigmamix.RData |only protViz-0.2.31/protViz/man/plot.mascot_query.Rd |only protViz-0.2.31/protViz/man/sigmamix.Rd |only protViz-0.2.31/protViz/man/summary.mascot.Rd |only protViz-0.2.37/protViz/DESCRIPTION | 11 protViz-0.2.37/protViz/MD5 | 86 ++- protViz-0.2.37/protViz/NAMESPACE | 39 + protViz-0.2.37/protViz/R/PTM_MarkerFinder.R | 1 protViz-0.2.37/protViz/R/fragmentIon.R | 4 protViz-0.2.37/protViz/R/lcmsmap.R | 94 +-- protViz-0.2.37/protViz/R/mascot.R | 261 ++++++++-- protViz-0.2.37/protViz/R/peakplot.R | 19 protViz-0.2.37/protViz/R/psm.R | 159 ++++++ protViz-0.2.37/protViz/R/ssrc.R | 7 protViz-0.2.37/protViz/R/zzz.R | 3 protViz-0.2.37/protViz/README.md | 25 protViz-0.2.37/protViz/build/vignette.rds |binary protViz-0.2.37/protViz/data/datalist | 1 protViz-0.2.37/protViz/inst/NEWS.Rd | 10 protViz-0.2.37/protViz/inst/doc/PTM_MarkerFinder.pdf |binary protViz-0.2.37/protViz/inst/doc/poster.R |only protViz-0.2.37/protViz/inst/doc/poster.Rnw |only protViz-0.2.37/protViz/inst/doc/poster.pdf |only protViz-0.2.37/protViz/inst/doc/protViz.Rnw | 14 protViz-0.2.37/protViz/inst/doc/protViz.pdf |binary protViz-0.2.37/protViz/inst/shiny-examples/PTM_MarkerFinder/ptm_marker_finder.R | 44 - protViz-0.2.37/protViz/inst/shiny-examples/PTM_MarkerFinder/server.R | 139 +++-- protViz-0.2.37/protViz/inst/shiny-examples/PTM_MarkerFinder/ui.R | 44 - protViz-0.2.37/protViz/inst/shiny-examples/atuth |only protViz-0.2.37/protViz/inst/unitTests/test_ssrc.R |only protViz-0.2.37/protViz/man/PTM_MarkerFinder.Rd | 13 protViz-0.2.37/protViz/man/as.psmSet.Rd |only protViz-0.2.37/protViz/man/lcmsmap.Rd | 7 protViz-0.2.37/protViz/man/mascot.rd |only protViz-0.2.37/protViz/man/peakplot.Rd | 74 +- protViz-0.2.37/protViz/man/psm.Rd | 12 protViz-0.2.37/protViz/man/ssrc.Rd | 16 protViz-0.2.37/protViz/vignettes/HexNAc_PTM_markerFinder.csv |only protViz-0.2.37/protViz/vignettes/graphics |only protViz-0.2.37/protViz/vignettes/jss.dtx |only protViz-0.2.37/protViz/vignettes/jss.pdf |only protViz-0.2.37/protViz/vignettes/jsslogo.jpg |only protViz-0.2.37/protViz/vignettes/poster.Rnw |only protViz-0.2.37/protViz/vignettes/protViz.Rnw | 14 protViz-0.2.37/protViz/vignettes/protViz.bib | 47 + 45 files changed, 829 insertions(+), 315 deletions(-)
Title: Integrative Differential Network Analysis in Genomics
Description: Fits covariate dependent partial correlation matrices for integrative models to identify differential networks between two groups. The method is described in Ha et. al., (2015) <doi:10.1093/bioinformatics/btv406>.
Author: Min Jin Ha <mjha@mdanderson.org>, Caleb A. Class <caclass@mdanderson.org>
Maintainer: Caleb A. Class <caclass@mdanderson.org>
Diff between iDINGO versions 1.0.1 dated 2017-08-24 and 1.0.2 dated 2017-10-12
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ R/plotNetwork.R | 5 ++++- 4 files changed, 15 insertions(+), 8 deletions(-)
Title: Helper Functions to 'misc3d' and 'rgl' Packages for Brain
Imaging
Description: This includes functions for creating 3D and 4D images using
'WebGL', 'rgl', and 'JavaScript' commands.
This package relies on the X toolkit ('XTK',
<https://github.com/xtk/X#readme>).
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between brainR versions 1.2 dated 2014-03-18 and 1.5.1 dated 2017-10-12
DESCRIPTION | 34 +++++---- MD5 | 43 +++++++---- NAMESPACE | 5 + NEWS.md |only R/brainR-package.R | 8 -- R/makeScene.R | 15 ++-- R/scene4d.R | 2 R/write4D.R | 78 ++++++++++----------- R/write4D.file.R | 148 +++++++++++++++++++++++++++++++--------- R/writeWebGL_split.R | 2 README.md | 19 ++++- inst/COPYRIGHTS |only inst/MNI152_T1_4mm_brain.nii.gz |only inst/Visit_1_2mm.nii.gz |only inst/Visit_2_2mm.nii.gz |only inst/Visit_3_2mm.nii.gz |only inst/Visit_4_2mm.nii.gz |only inst/Visit_5_2mm.nii.gz |only inst/index_template.html | 3 inst/xtk_xdat.gui.js |only man/brainR-package.Rd | 29 +++---- man/makeScene.Rd | 22 ++--- man/scene4d.Rd | 56 ++++++--------- man/write4D.Rd | 34 ++++----- man/write4D.file.Rd | 85 +++++++++++++++------- man/writeTrianglesSTL.Rd | 18 ++-- man/writeWebGL_split.Rd | 39 +++++----- 27 files changed, 386 insertions(+), 254 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing,
manipulating and analyzing transaction data and patterns (frequent
itemsets and association rules). Also provides interfaces to
C implementations of the association mining algorithms Apriori and Eclat
by C. Borgelt.
Author: Michael Hahsler [aut, cre, cph],
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph],
Ian Johnson [ctb, cph],
Christian Borgelt [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.5-3 dated 2017-09-01 and 1.5-4 dated 2017-10-12
DESCRIPTION | 10 +++---- MD5 | 52 ++++++++++++++++++------------------- NEWS.md | 12 ++++++++ R/appearance.R | 32 +++++++++++++++++++++- R/apriori.R | 2 - R/associations.R | 2 + R/read_write.R | 22 ++++++++++----- R/transactions.R | 10 ++----- README.md | 5 ++- build/vignette.rds |binary data/Adult.rda |binary data/AdultUCI.rda |binary data/Epub.rda |binary data/Groceries.rda |binary data/Income.rda |binary data/IncomeESL.rda |binary data/Mushroom.rda |binary data/SunBai.rda |binary inst/doc/arules.pdf |binary man/APappearance-class.Rd | 36 ++++++++++++++----------- man/interestMeasure.Rd | 2 - man/transactions-class.Rd | 9 ++++-- src/rapriori.c | 13 +-------- src/reclat.c | 16 ++--------- tests/testthat/test-apriori.R | 17 ++++++++++-- tests/testthat/test-associations.R | 13 +++++++-- tests/testthat/test-read_write.R | 7 ++++ 27 files changed, 163 insertions(+), 97 deletions(-)
Title: Exploratory Analysis of Genetic and Genomic Data
Description: Toolset for the exploration of genetic and genomic data. Adegenet
provides formal (S4) classes for storing and handling various genetic data,
including genetic markers with varying ploidy and hierarchical population
structure ('genind' class), alleles counts by populations ('genpop'), and
genome-wide SNP data ('genlight'). It also implements original multivariate
methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance
and similarity measures, and several spatial methods. A range of both empirical
and simulated datasets is also provided to illustrate various methods.
Author: Thibaut Jombart, Zhian N. Kamvar, Caitlin Collins, Roman Lustrik, Marie-
Pauline Beugin, Brian J. Knaus, Peter Solymos, Vladimir Mikryukov, Klaus Schliep, Tiago Maié, Libor Morkovsky, Ismail Ahmed, Anne Cori, Federico Calboli, RJ Ewing
Maintainer: Thibaut Jombart <thibautjombart@gmail.com>
Diff between adegenet versions 2.0.1 dated 2016-02-15 and 2.1.0 dated 2017-10-12
adegenet-2.0.1/adegenet/R/spca.rtests.R |only adegenet-2.0.1/adegenet/data/rupica.rda |only adegenet-2.1.0/adegenet/ChangeLog | 46 + adegenet-2.1.0/adegenet/DESCRIPTION | 39 - adegenet-2.1.0/adegenet/MD5 | 200 +++-- adegenet-2.1.0/adegenet/NAMESPACE | 36 + adegenet-2.1.0/adegenet/R/AIC.snapclust.R |only adegenet-2.1.0/adegenet/R/AICc.snapclust.R |only adegenet-2.1.0/adegenet/R/BIC.snapclust.R |only adegenet-2.1.0/adegenet/R/KIC.snapclust.R |only adegenet-2.1.0/adegenet/R/SNPbin.R | 88 ++ adegenet-2.1.0/adegenet/R/adegenet.package.R | 88 +- adegenet-2.1.0/adegenet/R/auxil.R | 37 - adegenet-2.1.0/adegenet/R/basicMethods.R | 28 adegenet-2.1.0/adegenet/R/chooseCN.R | 28 adegenet-2.1.0/adegenet/R/compoplot.R |only adegenet-2.1.0/adegenet/R/constructors.R | 8 adegenet-2.1.0/adegenet/R/dapc.R | 301 ++------ adegenet-2.1.0/adegenet/R/datasets.R | 36 + adegenet-2.1.0/adegenet/R/dist.genlight.R |only adegenet-2.1.0/adegenet/R/dist.genpop.R | 2 adegenet-2.1.0/adegenet/R/doc_C_routines.R |only adegenet-2.1.0/adegenet/R/export_to_mvmapper.R |only adegenet-2.1.0/adegenet/R/find.clust.R | 130 ++- adegenet-2.1.0/adegenet/R/gengraph.R | 4 adegenet-2.1.0/adegenet/R/glFunctions.R | 12 adegenet-2.1.0/adegenet/R/glHandle.R | 9 adegenet-2.1.0/adegenet/R/global_local_tests.R |only adegenet-2.1.0/adegenet/R/handling.R | 10 adegenet-2.1.0/adegenet/R/haploGen.R | 4 adegenet-2.1.0/adegenet/R/import.R | 151 ++-- adegenet-2.1.0/adegenet/R/inbreeding.R | 49 - adegenet-2.1.0/adegenet/R/monmonier.R | 4 adegenet-2.1.0/adegenet/R/seqTrack.R | 2 adegenet-2.1.0/adegenet/R/showmekittens.R |only adegenet-2.1.0/adegenet/R/snapclust.R |only adegenet-2.1.0/adegenet/R/snapclust.choose.k.R |only adegenet-2.1.0/adegenet/R/snpposi.R | 7 adegenet-2.1.0/adegenet/R/spca.R | 550 ++++++++++------ adegenet-2.1.0/adegenet/R/spca_randtest.R |only adegenet-2.1.0/adegenet/R/xvalDapc.R | 29 adegenet-2.1.0/adegenet/R/zzz.R | 11 adegenet-2.1.0/adegenet/README.md | 6 adegenet-2.1.0/adegenet/data/H3N2.rda |binary adegenet-2.1.0/adegenet/data/dapcIllus.rda |binary adegenet-2.1.0/adegenet/data/datalist | 1 adegenet-2.1.0/adegenet/data/eHGDP.rda |binary adegenet-2.1.0/adegenet/data/hybridtoy.RData |only adegenet-2.1.0/adegenet/data/microbov.rda |binary adegenet-2.1.0/adegenet/data/nancycats.rda |binary adegenet-2.1.0/adegenet/data/rupica.RData |only adegenet-2.1.0/adegenet/data/sim2pop.rda |binary adegenet-2.1.0/adegenet/data/spcaIllus.rda |binary adegenet-2.1.0/adegenet/man/AIC.snapclust.Rd |only adegenet-2.1.0/adegenet/man/AICc.Rd |only adegenet-2.1.0/adegenet/man/BIC.snapclust.Rd |only adegenet-2.1.0/adegenet/man/H3N2.Rd | 5 adegenet-2.1.0/adegenet/man/Hs.Rd | 7 adegenet-2.1.0/adegenet/man/Hs.test.Rd | 7 adegenet-2.1.0/adegenet/man/KIC.Rd |only adegenet-2.1.0/adegenet/man/adegenet.package.Rd | 79 +- adegenet-2.1.0/adegenet/man/auxil.Rd | 17 adegenet-2.1.0/adegenet/man/chooseCN.Rd | 11 adegenet-2.1.0/adegenet/man/compoplot.Rd |only adegenet-2.1.0/adegenet/man/dapcGraphics.Rd | 37 - adegenet-2.1.0/adegenet/man/dapcIllus.Rd | 7 adegenet-2.1.0/adegenet/man/df2genind.Rd | 42 - adegenet-2.1.0/adegenet/man/doc_C_routines.Rd |only adegenet-2.1.0/adegenet/man/eHGDP.Rd | 1 adegenet-2.1.0/adegenet/man/export_to_mvmapper.Rd |only adegenet-2.1.0/adegenet/man/fasta2DNAbin.Rd | 6 adegenet-2.1.0/adegenet/man/find.clusters.Rd | 228 +++--- adegenet-2.1.0/adegenet/man/genind2df.Rd | 7 adegenet-2.1.0/adegenet/man/genind2genpop.Rd | 7 adegenet-2.1.0/adegenet/man/genlight.Rd | 8 adegenet-2.1.0/adegenet/man/glAux.Rd | 2 adegenet-2.1.0/adegenet/man/glPca.Rd | 2 adegenet-2.1.0/adegenet/man/hierarchy-methods.Rd | 7 adegenet-2.1.0/adegenet/man/hybridize.Rd | 7 adegenet-2.1.0/adegenet/man/hybridtoy.Rd |only adegenet-2.1.0/adegenet/man/import2genind.Rd | 7 adegenet-2.1.0/adegenet/man/makefreq.Rd | 7 adegenet-2.1.0/adegenet/man/microbov.Rd | 1 adegenet-2.1.0/adegenet/man/minorAllele.Rd | 7 adegenet-2.1.0/adegenet/man/nancycats.Rd | 1 adegenet-2.1.0/adegenet/man/new.genind.Rd | 5 adegenet-2.1.0/adegenet/man/new.genpop.Rd | 5 adegenet-2.1.0/adegenet/man/old2new.Rd | 3 adegenet-2.1.0/adegenet/man/population-methods.Rd | 1 adegenet-2.1.0/adegenet/man/read.PLINK.Rd | 9 adegenet-2.1.0/adegenet/man/read.fstat.Rd | 7 adegenet-2.1.0/adegenet/man/read.genepop.Rd | 7 adegenet-2.1.0/adegenet/man/read.genetix.Rd | 7 adegenet-2.1.0/adegenet/man/read.snp.Rd | 11 adegenet-2.1.0/adegenet/man/read.structure.Rd | 7 adegenet-2.1.0/adegenet/man/repool.Rd | 7 adegenet-2.1.0/adegenet/man/rupica.Rd | 1 adegenet-2.1.0/adegenet/man/scaleGen.Rd | 5 adegenet-2.1.0/adegenet/man/seploc.Rd | 2 adegenet-2.1.0/adegenet/man/showmekittens.Rd |only adegenet-2.1.0/adegenet/man/sim2pop.Rd | 7 adegenet-2.1.0/adegenet/man/snapclust.Rd |only adegenet-2.1.0/adegenet/man/snapclust.choose.k.Rd |only adegenet-2.1.0/adegenet/man/spca.Rd | 167 +++- adegenet-2.1.0/adegenet/man/spcaIllus.Rd | 7 adegenet-2.1.0/adegenet/man/spca_randtest.Rd |only adegenet-2.1.0/adegenet/man/strata-methods.Rd | 31 adegenet-2.1.0/adegenet/man/tab.Rd | 1 adegenet-2.1.0/adegenet/man/web.Rd | 5 adegenet-2.1.0/adegenet/man/xvalDapc.Rd | 12 adegenet-2.1.0/adegenet/src/init.c |only adegenet-2.1.0/adegenet/tests/testthat/test-findclust.R |only adegenet-2.1.0/adegenet/tests/testthat/test_accessors.R | 26 adegenet-2.1.0/adegenet/tests/testthat/test_compoplot.R |only adegenet-2.1.0/adegenet/tests/testthat/test_genlight.R | 2 adegenet-2.1.0/adegenet/tests/testthat/test_haploGen.R |only adegenet-2.1.0/adegenet/tests/testthat/test_import.R | 180 ++++- adegenet-2.1.0/adegenet/tests/testthat/test_snapclust.R |only 118 files changed, 1816 insertions(+), 1125 deletions(-)
Title: Tools for Simplifying the Population and Querying of SQLite
Databases
Description: Provides objects and accompanying methods which facilitates populating and querying SQLite databases.
Author: Daniel Bottomly [cre, aut],
Shannon McWeeney [aut],
Beth Wilmot [aut]
Maintainer: Daniel Bottomly <bottomly@ohsu.edu>
Diff between poplite versions 0.99.17.3 dated 2017-02-23 and 0.99.19 dated 2017-10-12
poplite-0.99.17.3/poplite/README.md |only poplite-0.99.19/poplite/DESCRIPTION | 12 +++++----- poplite-0.99.19/poplite/MD5 | 17 ++++++-------- poplite-0.99.19/poplite/NAMESPACE | 5 ++-- poplite-0.99.19/poplite/R/Database.R | 21 +++++++++--------- poplite-0.99.19/poplite/build/vignette.rds |binary poplite-0.99.19/poplite/data/clinical.rda |binary poplite-0.99.19/poplite/inst/doc/poplite.pdf |binary poplite-0.99.19/poplite/tests/testthat.R | 5 ++-- poplite-0.99.19/poplite/tests/testthat/test-poplite.R | 17 ++++++++------ 10 files changed, 41 insertions(+), 36 deletions(-)
Title: Generalized Synthetic Control Method
Description: Generalized synthetic control method: causal inference with interactive fixed-effect models. It imputes counterfactuals for each treated unit using control group information based on a linear interactive fixed effects model that incorporates unit-specific intercepts interacted with time-varying coefficients. This method generalizes the synthetic control method to the case of multiple treated units and variable treatment periods, and improves efficiency and interpretability. Data must be with a dichotomous treatment but not necessarily in form of a balanced panel data.
Author: Yiqing Xu, Licheng Liu
Maintainer: Yiqing Xu <yiqingxu@ucsd.edu>
Diff between gsynth versions 1.0.2 dated 2017-03-12 and 1.0.5 dated 2017-10-12
gsynth-1.0.2/gsynth/README.md |only gsynth-1.0.2/gsynth/src/gsynth_init.c |only gsynth-1.0.5/gsynth/DESCRIPTION | 16 gsynth-1.0.5/gsynth/MD5 | 38 gsynth-1.0.5/gsynth/NAMESPACE | 17 gsynth-1.0.5/gsynth/R/RcppExports.R | 70 gsynth-1.0.5/gsynth/R/gsynth.R | 6165 +++++++++++++++++------------ gsynth-1.0.5/gsynth/R/interFE.R | 171 gsynth-1.0.5/gsynth/man/gsynth-internal.Rd | 25 gsynth-1.0.5/gsynth/man/gsynth-package.Rd | 4 gsynth-1.0.5/gsynth/man/gsynth.Rd | 45 gsynth-1.0.5/gsynth/man/interFE.Rd | 17 gsynth-1.0.5/gsynth/man/plot.gsynth.Rd | 22 gsynth-1.0.5/gsynth/man/print.gsynth.Rd | 8 gsynth-1.0.5/gsynth/man/print.interFE.Rd | 8 gsynth-1.0.5/gsynth/man/simdata.Rd | 2 gsynth-1.0.5/gsynth/man/turnout.Rd | 2 gsynth-1.0.5/gsynth/src/Makevars | 7 gsynth-1.0.5/gsynth/src/Makevars.win | 6 gsynth-1.0.5/gsynth/src/RcppExports.cpp | 98 gsynth-1.0.5/gsynth/src/interFE.cpp | 621 ++ 21 files changed, 4672 insertions(+), 2670 deletions(-)
Title: Bayesian Trophic Position Calculation with Stable Isotopes
Description: Estimates the trophic position of a consumer relative
to a baseline species. It implements a Bayesian approach which combines an
interface to the 'JAGS' MCMC library of 'rjags' and stable isotopes. Users are
encouraged to test the package and send bugs and/or errors to
trophicposition-support@googlegroups.com.
Author: Claudio Quezada-Romegialli, Andrew L Jackson, Chris Harrod
Maintainer: Claudio Quezada-Romegialli <clquezada@harrodlab.net>
Diff between tRophicPosition versions 0.7.0 dated 2017-06-12 and 0.7.3 dated 2017-10-12
tRophicPosition-0.7.0/tRophicPosition/man/set.mfrow.Rd |only tRophicPosition-0.7.3/tRophicPosition/DESCRIPTION | 20 tRophicPosition-0.7.3/tRophicPosition/MD5 | 127 - tRophicPosition-0.7.3/tRophicPosition/NAMESPACE | 61 tRophicPosition-0.7.3/tRophicPosition/NEWS.md |only tRophicPosition-0.7.3/tRophicPosition/R/Finnish_Lakes.R |only tRophicPosition-0.7.3/tRophicPosition/R/Roach.R |only tRophicPosition-0.7.3/tRophicPosition/R/checkNames.R | 113 - tRophicPosition-0.7.3/tRophicPosition/R/compareTwoDistributions.R | 147 + tRophicPosition-0.7.3/tRophicPosition/R/credibilityIntervals.R | 374 +++- tRophicPosition-0.7.3/tRophicPosition/R/fromParallelTP.R |only tRophicPosition-0.7.3/tRophicPosition/R/jagsOneBaseline.R | 378 ++-- tRophicPosition-0.7.3/tRophicPosition/R/loadIsotopeData.R | 11 tRophicPosition-0.7.3/tRophicPosition/R/multiModelTP.R | 22 tRophicPosition-0.7.3/tRophicPosition/R/multiSpeciesTP.R | 268 +-- tRophicPosition-0.7.3/tRophicPosition/R/parallelTP.R |only tRophicPosition-0.7.3/tRophicPosition/R/plotMCMC.R | 16 tRophicPosition-0.7.3/tRophicPosition/R/screenFoodWeb.R | 100 - tRophicPosition-0.7.3/tRophicPosition/R/summariseIsotopeData.R | 93 - tRophicPosition-0.7.3/tRophicPosition/R/summary.isotopeData.R | 108 - tRophicPosition-0.7.3/tRophicPosition/README.md | 80 tRophicPosition-0.7.3/tRophicPosition/build/vignette.rds |binary tRophicPosition-0.7.3/tRophicPosition/data/Finnish_Lakes.rda |only tRophicPosition-0.7.3/tRophicPosition/data/Roach.rda |only tRophicPosition-0.7.3/tRophicPosition/inst/doc/Multiple_model_calculation_of_trophic_position_in_R.R | 232 +- tRophicPosition-0.7.3/tRophicPosition/inst/doc/Multiple_model_calculation_of_trophic_position_in_R.Rmd | 18 tRophicPosition-0.7.3/tRophicPosition/inst/doc/Multiple_model_calculation_of_trophic_position_in_R.html | 649 +++---- tRophicPosition-0.7.3/tRophicPosition/inst/doc/Multiple_species_calculation_of_trophic_position_in_R.R | 256 +- tRophicPosition-0.7.3/tRophicPosition/inst/doc/Multiple_species_calculation_of_trophic_position_in_R.Rmd | 20 tRophicPosition-0.7.3/tRophicPosition/inst/doc/Multiple_species_calculation_of_trophic_position_in_R.html | 859 +++++----- tRophicPosition-0.7.3/tRophicPosition/inst/doc/Short_guide_to_tRophicPosition.R | 186 +- tRophicPosition-0.7.3/tRophicPosition/inst/doc/Short_guide_to_tRophicPosition.Rmd | 19 tRophicPosition-0.7.3/tRophicPosition/inst/doc/Short_guide_to_tRophicPosition.html | 495 ++--- tRophicPosition-0.7.3/tRophicPosition/man/Bilagay.Rd | 60 tRophicPosition-0.7.3/tRophicPosition/man/Finnish_Lakes.Rd |only tRophicPosition-0.7.3/tRophicPosition/man/Orestias.Rd | 60 tRophicPosition-0.7.3/tRophicPosition/man/Roach.Rd |only tRophicPosition-0.7.3/tRophicPosition/man/TDF.Rd | 70 tRophicPosition-0.7.3/tRophicPosition/man/TEF.Rd | 74 tRophicPosition-0.7.3/tRophicPosition/man/TPmodel.Rd | 84 tRophicPosition-0.7.3/tRophicPosition/man/Trout.Rd | 54 tRophicPosition-0.7.3/tRophicPosition/man/compareTwoDistributions.Rd | 77 tRophicPosition-0.7.3/tRophicPosition/man/credibilityIntervals.Rd | 150 - tRophicPosition-0.7.3/tRophicPosition/man/extractIsotopeData.Rd | 112 - tRophicPosition-0.7.3/tRophicPosition/man/fromParallelTP.Rd |only tRophicPosition-0.7.3/tRophicPosition/man/generateTPData.Rd | 186 +- tRophicPosition-0.7.3/tRophicPosition/man/getPosteriorMode.Rd | 62 tRophicPosition-0.7.3/tRophicPosition/man/jagsBayesianModel.Rd | 70 tRophicPosition-0.7.3/tRophicPosition/man/jagsOneBaseline.Rd | 146 - tRophicPosition-0.7.3/tRophicPosition/man/jagsTwoBaselines.Rd | 218 +- tRophicPosition-0.7.3/tRophicPosition/man/jagsTwoBaselinesFull.Rd | 238 +- tRophicPosition-0.7.3/tRophicPosition/man/loadIsotopeData.Rd | 136 - tRophicPosition-0.7.3/tRophicPosition/man/multiModelTP.Rd | 116 - tRophicPosition-0.7.3/tRophicPosition/man/multiSpeciesTP.Rd | 124 - tRophicPosition-0.7.3/tRophicPosition/man/pairwiseComparisons.Rd | 68 tRophicPosition-0.7.3/tRophicPosition/man/parametricTP.Rd | 110 - tRophicPosition-0.7.3/tRophicPosition/man/plot.isotopeData.Rd | 74 tRophicPosition-0.7.3/tRophicPosition/man/plotMCMC.Rd | 58 tRophicPosition-0.7.3/tRophicPosition/man/plotTP.Rd | 56 tRophicPosition-0.7.3/tRophicPosition/man/posteriorTP.Rd | 82 tRophicPosition-0.7.3/tRophicPosition/man/screenFoodWeb.Rd | 78 tRophicPosition-0.7.3/tRophicPosition/man/screenIsotopeData.Rd | 84 tRophicPosition-0.7.3/tRophicPosition/man/simulateTDF.Rd | 82 tRophicPosition-0.7.3/tRophicPosition/man/simulateTEF.Rd | 84 tRophicPosition-0.7.3/tRophicPosition/man/summariseIsotopeData.Rd | 74 tRophicPosition-0.7.3/tRophicPosition/man/summary.isotopeData.Rd | 60 tRophicPosition-0.7.3/tRophicPosition/man/trophicDensityPlot.Rd | 76 tRophicPosition-0.7.3/tRophicPosition/vignettes/Multiple_model_calculation_of_trophic_position_in_R.Rmd | 18 tRophicPosition-0.7.3/tRophicPosition/vignettes/Multiple_species_calculation_of_trophic_position_in_R.Rmd | 20 tRophicPosition-0.7.3/tRophicPosition/vignettes/Short_guide_to_tRophicPosition.Rmd | 19 70 files changed, 4147 insertions(+), 3585 deletions(-)
More information about tRophicPosition at CRAN
Permanent link
Title: React Helpers
Description: Make it easy to use 'react' in R with helper
dependency functions, embedded 'Babel' transpiler,
and examples. Please note the separate 'react'
BSD license <https://github.com/facebook/react/blob/master/LICENSE>
when using 'react' in your projects.
Author: Facebook Inc [aut, cph] (React library in lib,
https://facebook.github.io/react; see AUTHORS for full list of
contributors),
Kent Russell [aut, cre] (R interface)
Maintainer: Kent Russell <kent.russell@timelyportfolio.com>
Diff between reactR versions 0.1.2 dated 2017-04-10 and 0.1.3 dated 2017-10-12
DESCRIPTION | 8 - MD5 | 25 ++-- NEWS.md | 5 R/dependencies.R | 14 +- R/meta.R | 4 build/getreact.R | 4 build/vignette.rds |binary inst/doc/intro_reactR.html | 12 +- inst/examples/blueprint.R | 56 ++++----- inst/examples/react-virtualized.R |only inst/www/babel/babel.min.js | 50 ++++---- inst/www/react/react-dom.min.js | 221 +++++++++++++++++++++++++++++++++++--- inst/www/react/react.min.js | 34 +++-- man/html_dependency_react.Rd | 4 14 files changed, 319 insertions(+), 118 deletions(-)
Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R.
The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange
with R. This provides a reliable and scalable foundation for statistical services or
building R web applications. The OpenCPU server runs either as a single-user development
server within the interactive R session, or as a multi-user Linux stack based on Apache2.
The entire system is fully open source and permissively licensed. The OpenCPU website
has detailed documentation and example apps.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencpu versions 2.0.4 dated 2017-08-17 and 2.0.5 dated 2017-10-12
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS | 4 ++++ R/config.R | 4 +++- R/httpget_info.R | 32 ++++++++++++++++++++++++++++---- R/settings.R | 2 +- build/vignette.rds |binary inst/config/defaults.conf | 2 +- inst/doc/opencpu-paper.pdf |binary 9 files changed, 48 insertions(+), 18 deletions(-)
Title: Fast Access to Large ASCII Files
Description: Methods for fast access to large ASCII files. Currently the
following file formats are supported: comma separated format (CSV) and fixed
width format. It is assumed that the files are too large to fit into memory,
although the package can also be used to efficiently access files that do
fit into memory. Methods are provided to access and process files blockwise.
Furthermore, an opened file can be accessed as one would an ordinary
data.frame. The LaF vignette gives an overview of the functionality
provided.
Author: Jan van der Laan
Maintainer: Jan van der Laan <djvanderlaan@unrealizedtime.nl>
Diff between LaF versions 0.6.3 dated 2017-01-02 and 0.7.1 dated 2017-10-12
LaF-0.6.3/LaF/tests/testthat/test.csv |only LaF-0.6.3/LaF/tests/testthat/tmp.bla |only LaF-0.6.3/LaF/tests/testthat/tmp.csv |only LaF-0.6.3/LaF/tests/testthat/tmp.fwf |only LaF-0.6.3/LaF/tests/testthat/tmp.yaml |only LaF-0.7.1/LaF/DESCRIPTION | 12 ++-- LaF-0.7.1/LaF/MD5 | 87 ++++++++++++++----------------- LaF-0.7.1/LaF/NEWS | 4 + LaF-0.7.1/LaF/R/generics.R | 4 - LaF-0.7.1/LaF/R/laf.R | 59 +++++++++++++-------- LaF-0.7.1/LaF/R/meta.R | 2 LaF-0.7.1/LaF/R/open.R | 8 +- LaF-0.7.1/LaF/R/stats.R | 6 +- LaF-0.7.1/LaF/R/textutils.R | 2 LaF-0.7.1/LaF/build/vignette.rds |binary LaF-0.7.1/LaF/inst/doc/LaF-benchmark.pdf |binary LaF-0.7.1/LaF/inst/doc/LaF-manual.pdf |binary LaF-0.7.1/LaF/man/begin.Rd | 3 - LaF-0.7.1/LaF/man/cindexing.Rd | 3 - LaF-0.7.1/LaF/man/close.Rd | 1 LaF-0.7.1/LaF/man/current_line.Rd | 1 LaF-0.7.1/LaF/man/datamodels.Rd | 1 LaF-0.7.1/LaF/man/detect_dm_csv.Rd | 3 - LaF-0.7.1/LaF/man/determine_nlines.Rd | 3 - LaF-0.7.1/LaF/man/get_lines.Rd | 1 LaF-0.7.1/LaF/man/goto.Rd | 1 LaF-0.7.1/LaF/man/indexing.Rd | 1 LaF-0.7.1/LaF/man/laf_open.Rd | 1 LaF-0.7.1/LaF/man/laf_open_csv.Rd | 9 +-- LaF-0.7.1/LaF/man/laf_open_fwf.Rd | 1 LaF-0.7.1/LaF/man/levels.Rd | 3 - LaF-0.7.1/LaF/man/names.Rd | 1 LaF-0.7.1/LaF/man/ncol.Rd | 1 LaF-0.7.1/LaF/man/next_block.Rd | 1 LaF-0.7.1/LaF/man/nrow.Rd | 1 LaF-0.7.1/LaF/man/process_blocks.Rd | 12 ++-- LaF-0.7.1/LaF/man/read_dm_blaise.Rd | 1 LaF-0.7.1/LaF/man/read_lines.Rd | 1 LaF-0.7.1/LaF/man/sample_lines.Rd | 1 LaF-0.7.1/LaF/man/show.Rd | 1 LaF-0.7.1/LaF/man/stats.Rd | 25 ++++---- LaF-0.7.1/LaF/src/LaF.cpp | 5 - LaF-0.7.1/LaF/src/LaF.h |only LaF-0.7.1/LaF/src/column.h | 2 LaF-0.7.1/LaF/src/init.cpp |only LaF-0.7.1/LaF/src/reader.cpp | 6 +- LaF-0.7.1/LaF/src/stats.cpp | 7 -- LaF-0.7.1/LaF/src/textutils.cpp | 3 - 48 files changed, 139 insertions(+), 145 deletions(-)
Title: Seamless Integration Between R and 'Julia'
Description: Provides an R interface to 'Julia',
which is a high-level, high-performance dynamic programming language
for numerical computing, see <https://julialang.org/> for more information.
It provides a high-level interface as well as a low-level interface.
Using the high level interface, you could call any 'Julia' function just like
any R function with automatic type conversion. Using the low level interface,
you could deal with C-level SEXP directly while enjoying the convenience of
using a high-level programming language like 'Julia'.
Author: Changcheng Li [aut, cre]
Maintainer: Changcheng Li <cxl508@psu.edu>
Diff between JuliaCall versions 0.7.3 dated 2017-09-01 and 0.9.3 dated 2017-10-12
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Title: Extension of `data.frame`
Description: Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, a fast friendly file reader and parallel file writer. Offers a natural and flexible syntax, for faster development.
Author: Matt Dowle [aut, cre],
Arun Srinivasan [aut],
Jan Gorecki [ctb],
Tom Short [ctb],
Steve Lianoglou [ctb],
Eduard Antonyan [ctb]
Maintainer: Matt Dowle <mattjdowle@gmail.com>
Diff between data.table versions 1.10.4-1 dated 2017-10-09 and 1.10.4-2 dated 2017-10-12
DESCRIPTION | 6 MD5 | 20 +- NEWS.md | 10 + R/onAttach.R | 3 inst/doc/datatable-intro.html | 4 inst/doc/datatable-keys-fast-subset.html | 4 inst/doc/datatable-secondary-indices-and-auto-indexing.html | 6 inst/tests/tests.Rraw | 4 src/dogroups.c | 80 +++++----- src/openmp-utils.c | 2 src/rbindlist.c | 96 ++++++------ 11 files changed, 122 insertions(+), 113 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <http://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Neal Richardson [aut, cre],
Jonathan Keane [ctb],
Gordon Shotwell [ctb]
Maintainer: Neal Richardson <neal@crunch.io>
Diff between crunch versions 1.18.0 dated 2017-08-23 and 1.18.4 dated 2017-10-12
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crunch-1.18.4/crunch/tests/testthat/test-progress.R | 12 crunch-1.18.4/crunch/tests/testthat/test-shoji.R | 9 crunch-1.18.4/crunch/tests/testthat/test-user.R | 18 crunch-1.18.4/crunch/tests/testthat/test-variable-catalog.R | 68 + crunch-1.18.4/crunch/tests/testthat/test-variable-order.R | 8 crunch-1.18.4/crunch/tests/testthat/test-variable-summary.R | 40 crunch-1.18.4/crunch/tests/testthat/test-weighting.R | 196 +++ crunch-1.18.4/crunch/vignettes/analyze.Rmd | 15 crunch-1.18.4/crunch/vignettes/array-variables.Rmd | 12 crunch-1.18.4/crunch/vignettes/crunch-internals.Rmd |only crunch-1.18.4/crunch/vignettes/datasets.Rmd | 12 crunch-1.18.4/crunch/vignettes/derive.Rmd | 12 crunch-1.18.4/crunch/vignettes/export.Rmd | 14 crunch-1.18.4/crunch/vignettes/filters.Rmd | 12 crunch-1.18.4/crunch/vignettes/getting-started.Rmd | 13 crunch-1.18.4/crunch/vignettes/variable-order.Rmd | 12 crunch-1.18.4/crunch/vignettes/variables.Rmd | 16 crunch-1.18.4/crunch/vignettes/vignettes.RData |binary 303 files changed, 4065 insertions(+), 1951 deletions(-)
Title: Brazilian Economic Time Series
Description: It provides access to and information about the most important
Brazilian economic time series - from the Getulio Vargas Foundation <http://portal.fgv.br/en>,
the Central Bank of Brazil <http://www.bcb.gov.br> and the Brazilian Institute of Geography
and Statistics <http://www.ibge.gov.br>. It also presents tools for managing, analysing (e.g.
generating dynamic reports with a complete analysis of a series) and exporting
these time series.
Author: Pedro Costa Ferreira [aut, cre],
Talitha Speranza [aut],
Jonatha Azevedo [aut],
Fernando Teixeira [aut],
Daiane Marcolino [aut]
Maintainer: Pedro Costa Ferreira <pedro.guilherme@fgv.br>
Diff between BETS versions 0.3.2 dated 2017-08-29 and 0.3.3 dated 2017-10-12
BETS-0.3.2/BETS/R/get.data.frame.R |only BETS-0.3.2/BETS/man/get.data.frame.Rd |only BETS-0.3.3/BETS/DESCRIPTION | 22 BETS-0.3.3/BETS/LICENSE |only BETS-0.3.3/BETS/MD5 | 269 ++--- BETS-0.3.3/BETS/NAMESPACE | 222 ++-- BETS-0.3.3/BETS/R/BETS.R | 3 BETS-0.3.3/BETS/R/BETS.arch_test.R | 88 - BETS-0.3.3/BETS/R/BETS.corrgram.R | 272 ++--- BETS-0.3.3/BETS/R/BETS.deflate.R | 170 +-- BETS-0.3.3/BETS/R/BETS.dummy.R | 296 +++--- BETS-0.3.3/BETS/R/BETS.get.R | 177 +-- BETS-0.3.3/BETS/R/BETS.grnn.train.R | 298 +++--- BETS-0.3.3/BETS/R/BETS.report.R | 344 +++---- BETS-0.3.3/BETS/R/BETS.save.R | 100 +- BETS-0.3.3/BETS/R/BETS.search.R | 574 +++++------ BETS-0.3.3/BETS/R/BETS.sidra.get.R | 509 +++++----- BETS-0.3.3/BETS/R/BETS.sidra.search.R | 610 ++++++------ BETS-0.3.3/BETS/R/BETS.ur_test.R | 122 +- BETS-0.3.3/BETS/R/as.date.R | 48 BETS-0.3.3/BETS/R/chart.add_basic.R | 372 +++---- BETS-0.3.3/BETS/R/chart.add_extra.R | 248 ++--- BETS-0.3.3/BETS/R/chart.add_notes.R | 242 ++-- BETS-0.3.3/BETS/R/connection.R | 96 - BETS-0.3.3/BETS/R/constants.R | 16 BETS-0.3.3/BETS/R/draw.cap_utl.R | 150 +-- BETS-0.3.3/BETS/R/draw.cdb.R | 78 - BETS-0.3.3/BETS/R/draw.cei.R | 160 +-- BETS-0.3.3/BETS/R/draw.conf_lvl.R | 154 +-- BETS-0.3.3/BETS/R/draw.eap.R | 48 BETS-0.3.3/BETS/R/draw.ei_comps.R | 342 +++--- BETS-0.3.3/BETS/R/draw.ei_vars.R | 188 +-- BETS-0.3.3/BETS/R/draw.gdp_mon.R | 170 +-- BETS-0.3.3/BETS/R/draw.gdp_unemp.R | 172 +-- BETS-0.3.3/BETS/R/draw.gdp_vars.R | 146 +- BETS-0.3.3/BETS/R/draw.generic.R | 538 +++++------ BETS-0.3.3/BETS/R/draw.iie_br.R | 98 +- BETS-0.3.3/BETS/R/draw.indprod.R | 50 - BETS-0.3.3/BETS/R/draw.ipca.R | 128 +- BETS-0.3.3/BETS/R/draw.lab_coin.R | 162 +-- BETS-0.3.3/BETS/R/draw.lab_lead.R | 162 +-- BETS-0.3.3/BETS/R/draw.lei.R | 160 +-- BETS-0.3.3/BETS/R/draw.misery_index.R | 194 +-- BETS-0.3.3/BETS/R/draw.selic.R | 82 - BETS-0.3.3/BETS/R/draw.sent_ind.R | 128 +- BETS-0.3.3/BETS/R/draw.ulc.R | 48 BETS-0.3.3/BETS/R/draw.unemp.R | 46 BETS-0.3.3/BETS/R/draw.vargdp.R | 44 BETS-0.3.3/BETS/R/get.period.R | 54 - BETS-0.3.3/BETS/R/get.series.R |only BETS-0.3.3/BETS/R/get.series.bacen.R | 187 +-- BETS-0.3.3/BETS/R/sidra.aux.R | 504 +++++----- BETS-0.3.3/BETS/build/vignette.rds |binary BETS-0.3.3/BETS/inst/analysis_GRNN.Rmd | 782 +++++++-------- BETS-0.3.3/BETS/inst/analysis_HOLT-WINTERS.Rmd | 454 ++++----- BETS-0.3.3/BETS/inst/analysis_SARIMA.Rmd | 1027 ++++++++++----------- BETS-0.3.3/BETS/inst/business_cycle_dashboard.Rmd | 460 ++++----- BETS-0.3.3/BETS/inst/cei.csv | 512 +++++----- BETS-0.3.3/BETS/inst/cei_comps.csv | 12 BETS-0.3.3/BETS/inst/cei_vars.csv | 24 BETS-0.3.3/BETS/inst/custom_dashboard.Rmd | 768 +++++++-------- BETS-0.3.3/BETS/inst/doc/BETS_basic_usage.R | 170 +-- BETS-0.3.3/BETS/inst/doc/BETS_basic_usage.Rmd | 681 ++++++------- BETS-0.3.3/BETS/inst/doc/BETS_basic_usage.html | 640 ++++++------- BETS-0.3.3/BETS/inst/ei_vars.csv | 16 BETS-0.3.3/BETS/inst/fix_figs.tex | 18 BETS-0.3.3/BETS/inst/incerteza_fgv.csv | 414 ++++---- BETS-0.3.3/BETS/inst/lei.csv | 512 +++++----- BETS-0.3.3/BETS/inst/lei_comps.csv | 16 BETS-0.3.3/BETS/inst/lei_vars.csv | 22 BETS-0.3.3/BETS/inst/macro_situation_dashboard.Rmd | 398 ++++---- BETS-0.3.3/BETS/inst/mon_pib_comps.csv | 412 ++++---- BETS-0.3.3/BETS/inst/mon_pib_vars.csv | 390 +++---- BETS-0.3.3/BETS/inst/rstudio/addins.dcf | 22 BETS-0.3.3/BETS/inst/sondagens_completo_fgv.csv | 400 ++++---- BETS-0.3.3/BETS/inst/text.txt | 66 - BETS-0.3.3/BETS/inst/text2.txt | 34 BETS-0.3.3/BETS/man/BETS.Rd | 77 - BETS-0.3.3/BETS/man/BETS.addin_en.Rd | 24 BETS-0.3.3/BETS/man/BETS.addin_pt.Rd | 24 BETS-0.3.3/BETS/man/BETS.arch_test.Rd | 52 - BETS-0.3.3/BETS/man/BETS.chart.Rd | 226 ++-- BETS-0.3.3/BETS/man/BETS.corrgram.Rd | 66 - BETS-0.3.3/BETS/man/BETS.dashboard.Rd | 106 +- BETS-0.3.3/BETS/man/BETS.deflate.Rd | 48 BETS-0.3.3/BETS/man/BETS.dummy.Rd | 128 +- BETS-0.3.3/BETS/man/BETS.get.Rd | 102 +- BETS-0.3.3/BETS/man/BETS.grnn.test.Rd | 70 - BETS-0.3.3/BETS/man/BETS.grnn.train.Rd | 80 - BETS-0.3.3/BETS/man/BETS.normalize.Rd | 44 BETS-0.3.3/BETS/man/BETS.predict.Rd | 84 - BETS-0.3.3/BETS/man/BETS.report.Rd | 250 ++--- BETS-0.3.3/BETS/man/BETS.save.Rd | 46 BETS-0.3.3/BETS/man/BETS.save.sas.Rd | 64 - BETS-0.3.3/BETS/man/BETS.save.spss.Rd | 58 - BETS-0.3.3/BETS/man/BETS.save.stata.Rd | 64 - BETS-0.3.3/BETS/man/BETS.search.Rd | 258 ++--- BETS-0.3.3/BETS/man/BETS.sidra.get.Rd | 98 +- BETS-0.3.3/BETS/man/BETS.sidra.search.Rd | 56 - BETS-0.3.3/BETS/man/BETS.std_resid.Rd | 44 BETS-0.3.3/BETS/man/BETS.t_test.Rd | 70 - BETS-0.3.3/BETS/man/BETS.ur_test.Rd | 48 BETS-0.3.3/BETS/man/chart.add_basic.Rd | 84 - BETS-0.3.3/BETS/man/chart.add_extra.Rd | 76 - BETS-0.3.3/BETS/man/chart.add_notes.Rd | 50 - BETS-0.3.3/BETS/man/check.series.Rd | 38 BETS-0.3.3/BETS/man/connection.Rd | 22 BETS-0.3.3/BETS/man/draw.cap_utl.Rd | 34 BETS-0.3.3/BETS/man/draw.cdb.Rd | 34 BETS-0.3.3/BETS/man/draw.cei.Rd | 34 BETS-0.3.3/BETS/man/draw.conf_lvl.Rd | 34 BETS-0.3.3/BETS/man/draw.eap.Rd | 34 BETS-0.3.3/BETS/man/draw.ei_comps.Rd | 28 BETS-0.3.3/BETS/man/draw.ei_vars.Rd | 34 BETS-0.3.3/BETS/man/draw.gdp_comps.Rd | 34 BETS-0.3.3/BETS/man/draw.gdp_mon.Rd | 34 BETS-0.3.3/BETS/man/draw.gdp_unemp.Rd | 34 BETS-0.3.3/BETS/man/draw.gdp_vars.Rd | 34 BETS-0.3.3/BETS/man/draw.generic.Rd | 48 BETS-0.3.3/BETS/man/draw.iie_br.Rd | 34 BETS-0.3.3/BETS/man/draw.indprod.Rd | 34 BETS-0.3.3/BETS/man/draw.ipca.Rd | 34 BETS-0.3.3/BETS/man/draw.lab_coin.Rd | 34 BETS-0.3.3/BETS/man/draw.lab_lead.Rd | 34 BETS-0.3.3/BETS/man/draw.lei.Rd | 34 BETS-0.3.3/BETS/man/draw.misery_index.Rd | 34 BETS-0.3.3/BETS/man/draw.selic.Rd | 34 BETS-0.3.3/BETS/man/draw.sent_ind.Rd | 34 BETS-0.3.3/BETS/man/draw.survey.Rd | 40 BETS-0.3.3/BETS/man/draw.ulc.Rd | 28 BETS-0.3.3/BETS/man/draw.unemp.Rd | 28 BETS-0.3.3/BETS/man/draw.vargdp.Rd | 28 BETS-0.3.3/BETS/man/get.series.Rd |only BETS-0.3.3/BETS/man/get.series.bacen.Rd | 52 - BETS-0.3.3/BETS/man/msg.Rd | 52 - BETS-0.3.3/BETS/man/sidra.aux.Rd | 66 - BETS-0.3.3/BETS/vignettes/BETS_basic_usage.Rmd | 681 ++++++------- BETS-0.3.3/BETS/vignettes/biblio.bib | 610 ++++++------ 138 files changed, 11093 insertions(+), 11212 deletions(-)
Title: An Easy Way to Report ROC Analysis
Description: Provides an easy way to report the results of ROC analysis, including:
1. an ROC curve. 2. the value of Cutoff, SEN (sensitivity), SPE (specificity),
AUC (Area Under Curve), AUC.SE (the standard error of AUC),
PLR (positive likelihood ratio), NLR (negative likelihood ratio),
PPV (positive predictive value), NPV (negative predictive value).
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between reportROC versions 1.0 dated 2017-04-17 and 2.0 dated 2017-10-12
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/reportROC.R | 41 ++++++++++++++++++++++++++++++++++++++--- man/reportROC.Rd | 13 +++++++++++-- 4 files changed, 55 insertions(+), 11 deletions(-)
Title: Web Crawler and Scraper
Description: Performs parallel web crawling and web scraping. It is designed to crawl, parse and store web pages to produce data that can be directly used for analysis application. For details see Khalil and Fakir (2017) <DOI:10.1016/j.softx.2017.04.004>.
Author: Salim Khalil [aut, cre]
Maintainer: Salim Khalil <khalilsalim1@gmail.com>
Diff between Rcrawler versions 0.1.2 dated 2017-07-20 and 0.1.3 dated 2017-10-12
DESCRIPTION | 8 - MD5 | 17 ++-- R/LinkExtractor.R | 2 R/LinkNormalization.R | 79 ++++++++++++------- R/Rcrawlerp.R | 190 ++++++++++++++++++++++++++++++----------------- R/contentscraper.R | 1 R/getencoding.R | 2 R/tools.R |only man/LinkNormalization.Rd | 1 man/Rcrawler.Rd | 17 +++- 10 files changed, 206 insertions(+), 111 deletions(-)
Title: Low-Level R to Java Interface
Description: Low-level interface to Java VM very much like .C/.Call and friends. Allows creation of objects, calling methods and accessing fields.
Author: Simon Urbanek <simon.urbanek@r-project.org>
Maintainer: Simon Urbanek <simon.urbanek@r-project.org>
Diff between rJava versions 0.9-8 dated 2016-01-07 and 0.9-9 dated 2017-10-12
DESCRIPTION | 6 MD5 | 20 +- NEWS | 15 +- jri/Makefile.all | 2 jri/REngine/JRI/test/Makefile | 2 jri/REngine/Makefile | 2 jri/bootstrap/Makefile | 2 jri/src/Makefile.all | 3 man/javaImport.Rd | 4 src/init.c | 313 +++++++++++++++++++++++++++++++++++++++++- src/java/Makefile | 2 11 files changed, 346 insertions(+), 25 deletions(-)
Title: Tools for Working with ICD-9 and ICD-10 Codes, and Finding
Comorbidities
Description: Calculate comorbidities, Charlson scores, perform fast and accurate
validation, conversion, manipulation, filtering and comparison of ICD-9 and
ICD-10 codes. Common ambiguities and code formats are handled. This
package enables a work flow from raw lists of ICD codes in hospital
billing databases to comorbidities. ICD-9 and ICD-10 comorbidity mappings
from Quan (Deyo and Elixhauser versions), Elixhauser and AHRQ included. This
package replaces 'icd9', which should be uninstalled.
Author: Jack O. Wasey [aut, cre, cph],
William Murphy [ctb] (Van Walraven scores),
Anobel Odisho [ctb] (Hierarchical Condition Codes),
Ed Lee [ctb] (explain codes in table format),
Kevin Ushey [ctb] (Code adapted for fast factor generation),
R Core Team [ctb, cph] (m4 macro for OpenMP detection in configure)
Maintainer: Jack O. Wasey <jack@jackwasey.com>
Diff between icd versions 2.2 dated 2017-05-14 and 2.3.1 dated 2017-10-12
icd-2.2/icd/man/icd9cm_hierarchy_hotfix.Rd |only icd-2.3.1/icd/DESCRIPTION | 17 icd-2.3.1/icd/MD5 | 94 +- icd-2.3.1/icd/R/RcppExports.R | 130 ++-- icd-2.3.1/icd/R/children.R | 4 icd-2.3.1/icd/R/comorbid.R | 8 icd-2.3.1/icd/R/convert.R | 8 icd-2.3.1/icd/R/datadocs.R | 3 icd-2.3.1/icd/R/generate_mappings.R | 12 icd-2.3.1/icd/R/parse-rtf.R | 14 icd-2.3.1/icd/R/parse.R | 48 - icd-2.3.1/icd/R/save_in_data_dir.R | 2 icd-2.3.1/icd/R/score.R | 8 icd-2.3.1/icd/R/sort.R | 2 icd-2.3.1/icd/R/sysdata.rda |binary icd-2.3.1/icd/R/util-test.R | 5 icd-2.3.1/icd/R/util.R | 4 icd-2.3.1/icd/README.md | 32 - icd-2.3.1/icd/data/icd10_map_ahrq.RData |binary icd-2.3.1/icd/data/icd10_map_cc.RData |binary icd-2.3.1/icd/data/icd10_map_elix.RData |binary icd-2.3.1/icd/data/icd10_map_quan_deyo.RData |binary icd-2.3.1/icd/data/icd10_map_quan_elix.RData |binary icd-2.3.1/icd/data/icd10_sub_chapters.RData |binary icd-2.3.1/icd/data/icd10cm2016.RData |binary icd-2.3.1/icd/data/icd9_map_ahrq.RData |binary icd-2.3.1/icd/data/icd9_map_cc.RData |binary icd-2.3.1/icd/data/icd9_map_elix.RData |binary icd-2.3.1/icd/data/icd9_map_quan_deyo.RData |binary icd-2.3.1/icd/data/icd9_map_quan_elix.RData |binary icd-2.3.1/icd/data/icd9cm_billable.RData |binary icd-2.3.1/icd/data/icd9cm_hierarchy.RData |binary icd-2.3.1/icd/inst/doc/Charlson_and_other_scores.html | 6 icd-2.3.1/icd/inst/doc/icd-10.Rmd | 2 icd-2.3.1/icd/inst/doc/icd-10.html | 8 icd-2.3.1/icd/inst/doc/introduction.html | 54 - icd-2.3.1/icd/inst/include/icd_RcppExports.h | 246 +++---- icd-2.3.1/icd/man/generate_uranium_pathology.Rd | 2 icd-2.3.1/icd/man/icd-package.Rd | 1 icd-2.3.1/icd/man/icd9cm_generate_chapters_hierarchy.Rd | 2 icd-2.3.1/icd/man/uranium_pathology.Rd | 3 icd-2.3.1/icd/src/Makevars.in | 7 icd-2.3.1/icd/src/RcppExports.cpp | 512 ++++++++-------- icd-2.3.1/icd/src/registration.c | 262 ++++---- icd-2.3.1/icd/tests/testthat/test-parse-icd9.R | 47 + icd-2.3.1/icd/tests/testthat/test-parse.R | 13 icd-2.3.1/icd/tests/testthat/test-sample-data.R | 11 icd-2.3.1/icd/tests/testthat/test-sort.R |only icd-2.3.1/icd/vignettes/icd-10.Rmd | 2 49 files changed, 803 insertions(+), 766 deletions(-)
Title: Incremental Graphlet Counting for Network Optimisation
Description: An efficient and incremental approach for calculating
the differences in orbit counts when performing single edge modifications
in a network. Calculating the differences in orbit counts is much more efficient than
recalculating all orbit counts from scratch for each time point.
Author: Robrecht Cannoodt
Maintainer: Robrecht Cannoodt <robrecht.cannoodt@gmail.com>
Diff between incgraph versions 1.0 dated 2017-10-02 and 1.0.1 dated 2017-10-12
DESCRIPTION | 9 +++++---- MD5 | 14 +++++++++----- NAMESPACE | 11 +++++++++++ R/incgraph_wrapper.R | 44 +++++++++++++++----------------------------- R/package.R |only man/incgraph.Rd |only man/new.incgraph.network.Rd | 10 +--------- src/incgraph.cpp | 4 ++-- tests |only 9 files changed, 43 insertions(+), 49 deletions(-)
Title: Confidence Intervals for the Current Status Model
Description: Computes the maximum likelihood estimator, the smoothed maximum likelihood
estimator and pointwise bootstrap confidence intervals for the distribution
function under current status data.
Groeneboom and Hendrickx (2017) <doi:10.1214/17-EJS1345>.
Author: Piet Groeneboom [aut],
Kim Hendrickx [cre]
Maintainer: Kim Hendrickx <kim.hendrickx@uhasselt.be>
Diff between curstatCI versions 0.1.0 dated 2017-07-25 and 0.1.1 dated 2017-10-12
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- R/RcppExports.R | 9 ++++----- build/vignette.rds |binary inst/doc/curstatCI.Rmd | 2 +- inst/doc/curstatCI.html | 12 ++++++------ man/ComputeBW.Rd | 2 +- man/ComputeConfIntervals.Rd | 2 +- man/ComputeMLE.Rd | 2 +- man/ComputeSMLE.Rd | 2 +- src/CI.cpp | 23 +++++++++++++++-------- src/CurrentStatus_Functions.cpp | 5 ++--- vignettes/bibliography.bib | 19 +++++++++++++------ vignettes/curstatCI.Rmd | 2 +- 14 files changed, 64 insertions(+), 52 deletions(-)
Title: Discriminant Analysis with Additional Information
Description: In applications it is usual that some additional information is available. This package dawai (an acronym for Discriminant Analysis With Additional Information) performs linear and quadratic discriminant analysis with additional information expressed as inequality restrictions among the populations means. It also computes several estimations of the true error rate.
Author: David Conde, Miguel A. Fernandez, Bonifacio Salvador
Maintainer: David Conde <dconde@eio.uva.es>
Diff between dawai versions 1.2.1 dated 2015-08-31 and 1.2.2 dated 2017-10-12
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/rlda.R | 2 +- R/rqda.R | 2 +- build/vignette.rds |binary inst/doc/dawai.pdf |binary man/dawai-package.Rd | 4 ++-- 7 files changed, 14 insertions(+), 14 deletions(-)
Title: 'Pubmed' Word Clouds
Description: Create a word cloud using the abstract of publications from 'Pubmed'.
Author: Felix Yanhui Fan <nolanfyh@gmail.com>
Maintainer: Felix Yanhui Fan <nolanfyh@gmail.com>
Diff between PubMedWordcloud versions 0.3.4 dated 2017-06-25 and 0.3.5 dated 2017-10-12
DESCRIPTION | 8 +++---- MD5 | 8 +++---- NAMESPACE | 5 +++- R/getAbstracts.R | 54 +++++++++++++++++++++++++++++++++++++++++----------- man/getAbstracts.Rd | 4 ++- 5 files changed, 58 insertions(+), 21 deletions(-)
More information about PubMedWordcloud at CRAN
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