Title: Statistical Shape Analysis
Description: Routines for the statistical analysis of landmark
shapes, including Procrustes analysis, graphical displays, principal
components analysis, permutation and bootstrap tests, thin-plate
spline transformation grids and comparing covariance matrices.
See Dryden, I.L. and Mardia, K.V. (2016). Statistical shape analysis,
with Applications in R (2nd Edition), John Wiley and Sons.
Author: Ian L. Dryden
Maintainer: Ian Dryden <ian.dryden@nottingham.ac.uk>
Diff between shapes versions 1.2.1 dated 2017-09-22 and 1.2.2 dated 2017-11-03
DESCRIPTION | 8 MD5 | 69 +++---- NAMESPACE | 4 R/shapes.R | 429 +++++++++++++++++++++++++++++++++++++++++++-- data/apes.rda |binary data/brains.rda |binary data/cortical.rda |binary data/digit3.dat.rda |binary data/dna.dat.rda |binary data/gels.rda |binary data/gorf.dat.rda |binary data/gorm.dat.rda |binary data/humanmove.rda |binary data/macaques.rda |binary data/macf.dat.rda |binary data/macm.dat.rda |binary data/mice.rda |binary data/nsa.rda |binary data/panf.dat.rda |binary data/panm.dat.rda |binary data/pongof.dat.rda |binary data/pongom.dat.rda |binary data/protein.rda |binary data/qcet2.dat.rda |binary data/qlet2.dat.rda |binary data/qset2.dat.rda |binary data/rats.rda |binary data/sand.rda |binary data/schizophrenia.dat.rda |binary data/schizophrenia.rda |binary data/shells.rda |binary data/sooty.dat.rda |binary data/sooty.rda |binary data/steroids.rda |binary man/PED.Rd |only man/shapes-internal.Rd | 3 36 files changed, 460 insertions(+), 53 deletions(-)
Title: Object Pooling
Description: Enables the creation of object pools, which make it less
computationally expensive to fetch a new object. Currently the
only supported pooled objects are 'DBI' connections.
Author: Barbara Borges [aut, cre],
RStudio [cph]
Maintainer: Barbara Borges <barbara@rstudio.com>
Diff between pool versions 0.1.2 dated 2017-11-03 and 0.1.3 dated 2017-11-03
DESCRIPTION | 6 - MD5 | 28 +++---- NEWS.md | 5 + R/DBI-connection-transaction.R | 59 ++++++++------- R/DBI-connection.R | 63 ++++++++-------- R/DBI-object.R | 35 +++++---- R/DBI.R | 35 +++++---- R/dbplyr.R | 47 ++++++------ man/DBI-connection.Rd | 63 ++++++++-------- man/DBI-object.Rd | 35 +++++---- man/dbPool.Rd | 35 +++++---- man/dplyr-db-methods.Rd | 47 ++++++------ man/pool.Rd | 26 ------ man/poolWithTransaction.Rd | 59 ++++++++------- tests/testthat/test-dplyr.R | 159 ++++++++++++++++++++--------------------- 15 files changed, 367 insertions(+), 335 deletions(-)
Title: Parallelized Minimum Redundancy, Maximum Relevance (mRMR)
Ensemble Feature Selection
Description: Computes mutual information matrices from continuous, categorical and survival variables, as well as feature selection with minimum redundancy, maximum relevance (mRMR) and a new ensemble mRMR technique.
Author: Nicolas De Jay, Simon Papillon-Cavanagh, Catharina Olsen, Gianluca Bontempi, Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Diff between mRMRe versions 2.0.5 dated 2014-08-19 and 2.0.7 dated 2017-11-03
mRMRe-2.0.5/mRMRe/README |only mRMRe-2.0.5/mRMRe/TODO |only mRMRe-2.0.7/mRMRe/DESCRIPTION | 13 ++++++----- mRMRe-2.0.7/mRMRe/MD5 | 24 ++++++++++++---------- mRMRe-2.0.7/mRMRe/NAMESPACE | 6 +++-- mRMRe-2.0.7/mRMRe/build/vignette.rds |binary mRMRe-2.0.7/mRMRe/inst/doc/mRMRe.pdf |binary mRMRe-2.0.7/mRMRe/man/export_concordance_index.Rd |only mRMRe-2.0.7/mRMRe/man/export_filters.Rd |only mRMRe-2.0.7/mRMRe/man/export_filters_bootstrap.Rd |only mRMRe-2.0.7/mRMRe/man/export_mim.Rd |only mRMRe-2.0.7/mRMRe/man/get_thread_count.Rd |only mRMRe-2.0.7/mRMRe/man/set_thread_count.Rd |only mRMRe-2.0.7/mRMRe/src/Data.cpp | 10 +++------ mRMRe-2.0.7/mRMRe/src/Makevars | 4 +-- mRMRe-2.0.7/mRMRe/src/exports.cpp | 19 +++++++++++++++++ mRMRe-2.0.7/mRMRe/src/exports.h | 4 +++ 17 files changed, 54 insertions(+), 26 deletions(-)
Title: Classical Test Theory Functions
Description: A collection of common test and item analyses from a classical test theory (CTT) framework. Analyses can be applied to both dichotomous and polytomous data. Functions provide reliability analyses (alpha), item statistics, disctractor analyses, disattenuated correlations, scoring routines, and empirical ICCs.
Author: John T. Willse
Maintainer: John T. Willse <willse@uncg.edu>
Diff between CTT versions 2.1 dated 2014-02-25 and 2.3 dated 2017-11-03
DESCRIPTION | 10 +++++----- MD5 | 21 +++++++++++++-------- NAMESPACE | 9 +++++++-- R/distractor.analysis.R | 22 ++++++++++++---------- R/distractorAnalysis.R |only R/itemAnalysis.R |only R/print.itemAnalysis.R |only R/reliability.R | 10 +++++++--- R/score.R | 26 +++++++++++++++++++++++--- man/distractor.analysis.Rd | 5 ++++- man/distractorAnalysis.Rd |only man/itemAnalysis.Rd |only man/reliability.Rd | 9 ++++++--- man/score.Rd | 7 +++++-- 14 files changed, 82 insertions(+), 37 deletions(-)
Title: Scoring Rules for Parametric and Simulated Distribution
Forecasts
Description: Dictionary-like reference for computing scoring rules in a wide
range of situations. Covers both parametric forecast distributions (such as
mixtures of Gaussians) and distributions generated via simulation.
Author: Alexander Jordan, Fabian Krueger, Sebastian Lerch
Maintainer: Fabian Krueger <Fabian.Krueger83@gmail.com>
Diff between scoringRules versions 0.9.3 dated 2017-08-10 and 0.9.4 dated 2017-11-03
DESCRIPTION | 11 +-- MD5 | 95 +++++++++++++------------- NAMESPACE | 17 ++++ R/RcppExports.R | 12 +-- R/header_replication.R | 2 R/scores_beta.R | 14 +++ R/scores_exp.R | 13 ++- R/scores_gamma.R | 13 +++ R/scores_gev.R | 18 ++++ R/scores_gpd.R | 11 +++ R/scores_lapl.R | 9 ++ R/scores_llapl.R | 12 +++ R/scores_llogis.R | 12 +++ R/scores_lnorm.R | 15 ++++ R/scores_logis.R | 11 +++ R/scores_mixnorm.R | 61 ++++++++++++---- R/scores_nbinom.R | 21 +++++ R/scores_norm.R | 24 ++++++ R/scores_pois.R | 8 +- R/scores_sample_univ.R | 83 +++++++++++++++------- R/scores_t.R | 13 +++ R/scores_unif.R | 9 ++ build/vignette.rds |binary inst/doc/article.R |only inst/doc/article.Rnw |only inst/doc/article.pdf |only inst/doc/crpsformulas.html | 4 - inst/doc/gettingstarted.html | 4 - man/ar_ms.Rd | 2 man/scores_beta.Rd | 3 man/scores_exp.Rd | 9 +- man/scores_gamma.Rd | 3 man/scores_gev.Rd | 3 man/scores_gpd.Rd | 3 man/scores_lapl.Rd | 3 man/scores_llapl.Rd | 3 man/scores_llogis.Rd | 3 man/scores_lnorm.Rd | 4 + man/scores_logis.Rd | 2 man/scores_mixnorm.Rd | 15 ++-- man/scores_nbinom.Rd | 3 man/scores_norm.Rd | 5 + man/scores_pois.Rd | 3 man/scores_sample_univ.Rd | 11 +-- man/scores_t.Rd | 2 man/scores_unif.Rd | 3 src/RcppExports.cpp | 39 ++++------ src/mixn.cpp | 134 ++++++++++++++++++++++--------------- tests/testthat/test-crps_mixnorm.R | 3 vignettes/article.Rnw |only vignettes/bibliography.bib |only 51 files changed, 542 insertions(+), 206 deletions(-)
Title: Evaluation Metrics for Machine Learning
Description: An implementation of evaluation metrics in R that are commonly
used in supervised machine learning. It implements metrics for
regression, time series, binary classification, classification,
and information retrieval problems. It has zero dependencies and
a consistent, simple interface for all functions.
Author: Ben Hamner [aut, cph],
Michael Frasco [aut, cre],
Erin LeDell [ctb]
Maintainer: Michael Frasco <mfrasco6@gmail.com>
Diff between Metrics versions 0.1.2 dated 2017-04-21 and 0.1.3 dated 2017-11-03
Metrics-0.1.2/Metrics/NEWS |only Metrics-0.1.2/Metrics/R/metrics.r |only Metrics-0.1.2/Metrics/inst |only Metrics-0.1.2/Metrics/tests/test_all.R |only Metrics-0.1.3/Metrics/DESCRIPTION | 37 ++++--- Metrics-0.1.3/Metrics/LICENSE |only Metrics-0.1.3/Metrics/MD5 | 72 +++++++++------ Metrics-0.1.3/Metrics/NAMESPACE | 20 +++- Metrics-0.1.3/Metrics/R/binary_classification.R |only Metrics-0.1.3/Metrics/R/classification.R |only Metrics-0.1.3/Metrics/R/information_retrieval.R |only Metrics-0.1.3/Metrics/R/regression.R |only Metrics-0.1.3/Metrics/R/time_series.R |only Metrics-0.1.3/Metrics/man/MeanQuadraticWeightedKappa.Rd | 23 +++- Metrics-0.1.3/Metrics/man/ScoreQuadraticWeightedKappa.Rd | 29 +++--- Metrics-0.1.3/Metrics/man/accuracy.Rd |only Metrics-0.1.3/Metrics/man/ae.Rd | 25 +++-- Metrics-0.1.3/Metrics/man/ape.Rd |only Metrics-0.1.3/Metrics/man/apk.Rd | 37 ++++++- Metrics-0.1.3/Metrics/man/auc.Rd | 32 +++++- Metrics-0.1.3/Metrics/man/bias.Rd |only Metrics-0.1.3/Metrics/man/ce.Rd | 24 +++-- Metrics-0.1.3/Metrics/man/f1.Rd |only Metrics-0.1.3/Metrics/man/ll.Rd | 25 +++-- Metrics-0.1.3/Metrics/man/logLoss.Rd | 25 +++-- Metrics-0.1.3/Metrics/man/mae.Rd | 25 +++-- Metrics-0.1.3/Metrics/man/mape.Rd |only Metrics-0.1.3/Metrics/man/mapk.Rd | 36 ++++++- Metrics-0.1.3/Metrics/man/mase.Rd |only Metrics-0.1.3/Metrics/man/mdae.Rd |only Metrics-0.1.3/Metrics/man/mse.Rd | 25 +++-- Metrics-0.1.3/Metrics/man/msle.Rd | 29 ++++-- Metrics-0.1.3/Metrics/man/params_binary.Rd |only Metrics-0.1.3/Metrics/man/params_classification.Rd |only Metrics-0.1.3/Metrics/man/params_regression.Rd |only Metrics-0.1.3/Metrics/man/percent_bias.Rd |only Metrics-0.1.3/Metrics/man/rae.Rd |only Metrics-0.1.3/Metrics/man/rmse.Rd | 25 +++-- Metrics-0.1.3/Metrics/man/rmsle.Rd | 29 ++++-- Metrics-0.1.3/Metrics/man/rrse.Rd |only Metrics-0.1.3/Metrics/man/rse.Rd |only Metrics-0.1.3/Metrics/man/se.Rd | 23 +++- Metrics-0.1.3/Metrics/man/sle.Rd | 29 ++++-- Metrics-0.1.3/Metrics/man/smape.Rd |only Metrics-0.1.3/Metrics/man/sse.Rd |only Metrics-0.1.3/Metrics/tests/testthat |only Metrics-0.1.3/Metrics/tests/testthat.R |only 47 files changed, 403 insertions(+), 167 deletions(-)
More information about spatialwarnings at CRAN
Permanent link
Title: Wraps the API for the Brazilian Chamber of Deputies
Description: Provides propositions, votings, deputies and parties data from
Brazilian Chamber of Deputies <https://dadosabertos.camara.leg.br> in data frames.
Author: Paulo Vinícius Soares [aut, cre],
Nazareno Andrade [aut],
Laboratório Analytics (UFCG) [cph, fnd]
Maintainer: Paulo Vinícius Soares <paulo.soares@ccc.ufcg.edu.br>
Diff between rcongresso versions 0.1.3 dated 2017-10-10 and 0.2.1 dated 2017-11-03
DESCRIPTION | 6 - MD5 | 59 +++++----- R/deputados.R | 48 +++++--- R/proposicoes.R | 144 +++++++++++++++++------- R/utils.R | 62 +++++++--- R/votacoes.R | 107 ++++++++---------- README.md | 22 ++- inst/doc/introducao-rcongresso.R | 42 +------ inst/doc/introducao-rcongresso.Rmd | 91 ++++----------- inst/doc/introducao-rcongresso.html | 203 ++++++++++++----------------------- inst/doc/purrr-e-rcongresso.R | 10 - inst/doc/purrr-e-rcongresso.Rmd | 10 - inst/doc/purrr-e-rcongresso.html | 75 ++++++------ man/fetch_deputado.Rd | 7 - man/fetch_despesas_deputado.Rd | 8 - man/fetch_id_proposicao.Rd | 8 - man/fetch_orientacoes.Rd | 13 +- man/fetch_proposicao.Rd | 58 ++++++++-- man/fetch_proposicao_from_votacao.Rd | 5 man/fetch_status_proposicao.Rd | 7 - man/fetch_tipo_proposicao.Rd | 5 man/fetch_ultimo_status_deputado.Rd |only man/fetch_votacao.Rd | 8 - man/fetch_votacoes.Rd | 8 - man/fetch_votos.Rd | 13 +- man/get_votos_partidos.Rd | 9 - man/ultima_votacao.Rd | 7 - tests/testthat/test_deputados.R | 11 + tests/testthat/test_proposicoes.R | 27 +++- vignettes/introducao-rcongresso.Rmd | 91 ++++----------- vignettes/purrr-e-rcongresso.Rmd | 10 - 31 files changed, 593 insertions(+), 581 deletions(-)
Title: Tools for Detecting Predatory Publishers and Journals
Description: Allows the user to check and find (allegedly) predatory journals based on Beall's list available at <https://scholarlyoa.com/>.
As part of a research project, the data from the website has been scraped with a web scraping script.
The package includes a search function and direct access to this database of predatory journals. The use of this tool
should facilitate the detection of predatory publications by researchers and librarians.
Author: Marcelo Perlin [aut, cre]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between predatory versions 1.1 dated 2017-01-12 and 1.2 dated 2017-11-03
predatory-1.1/predatory/R/OnAttach.R |only predatory-1.2/predatory/DESCRIPTION | 12 predatory-1.2/predatory/MD5 | 30 predatory-1.2/predatory/NAMESPACE | 8 predatory-1.2/predatory/NEWS.md | 20 predatory-1.2/predatory/R/find_predatory.R | 171 predatory-1.2/predatory/R/get_predpubTable.R | 71 predatory-1.2/predatory/README.md |only predatory-1.2/predatory/build/vignette.rds |binary predatory-1.2/predatory/inst/doc/predatory-vignette.R | 54 predatory-1.2/predatory/inst/doc/predatory-vignette.Rmd | 153 predatory-1.2/predatory/inst/doc/predatory-vignette.html | 378 predatory-1.2/predatory/inst/extdata/predpub.csv |11740 +-------------- predatory-1.2/predatory/man/find.predatory.Rd | 74 predatory-1.2/predatory/man/get.predpubTable.Rd | 56 predatory-1.2/predatory/tests/testthat/test_predatory.R | 36 predatory-1.2/predatory/vignettes/predatory-vignette.Rmd | 153 17 files changed, 1740 insertions(+), 11216 deletions(-)
Title: Topic Models
Description: Provides an interface to the C code for Latent Dirichlet
Allocation (LDA) models and Correlated Topics Models
(CTM) by David M. Blei and co-authors and the C++ code
for fitting LDA models using Gibbs sampling by Xuan-Hieu
Phan and co-authors.
Author: Bettina Grün [aut, cre],
Kurt Hornik [aut]
Maintainer: Bettina Grün <Bettina.Gruen@jku.at>
Diff between topicmodels versions 0.2-6 dated 2017-04-18 and 0.2-7 dated 2017-11-03
DESCRIPTION | 8 ++--- MD5 | 16 +++++----- build/vignette.rds |binary data/AssociatedPress.rda |binary inst/NEWS.Rd | 9 ++++++ inst/doc/topicmodels.R | 68 ++++++++++++++++++---------------------------- inst/doc/topicmodels.Rnw | 52 +++++++++++++---------------------- inst/doc/topicmodels.pdf |binary vignettes/topicmodels.Rnw | 52 +++++++++++++---------------------- 9 files changed, 88 insertions(+), 117 deletions(-)
Title: Score Test Based on Saddlepoint Approximation
Description: Performs score test using saddlepoint approximation to estimate the null distribution.
Author: Rounak Dey, Seunggeun Lee
Maintainer: Rounak Dey <deyrnk@umich.edu>
Diff between SPAtest versions 2.0.1 dated 2017-11-02 and 2.0.2 dated 2017-11-03
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/SPA_functions.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Interface to the Search 'API' for 'PLoS' Journals
Description: A programmatic interface to the 'SOLR' based
search 'API' (<http://api.plos.org/>) provided by the Public
Library of Science journals to search their articles.
Functions are included for searching for articles, retrieving
articles, making plots, doing 'faceted' searches,
'highlight' searches, and viewing results of 'highlighted'
searches in a browser.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rplos versions 0.6.4 dated 2016-11-23 and 0.8.0 dated 2017-11-03
rplos-0.6.4/rplos/man/check_response.Rd |only rplos-0.6.4/rplos/man/citations.Rd |only rplos-0.6.4/rplos/tests/testthat/test-check_response.R |only rplos-0.6.4/rplos/tests/testthat/test-citations.R |only rplos-0.8.0/rplos/DESCRIPTION | 18 rplos-0.8.0/rplos/LICENSE | 2 rplos-0.8.0/rplos/MD5 | 163 +++--- rplos-0.8.0/rplos/NAMESPACE | 8 rplos-0.8.0/rplos/NEWS.md | 49 +- rplos-0.8.0/rplos/R/citations.R | 54 -- rplos-0.8.0/rplos/R/facetplos.r | 16 rplos-0.8.0/rplos/R/fulltext.R | 65 +- rplos-0.8.0/rplos/R/highbrow.r | 2 rplos-0.8.0/rplos/R/highplos.r | 85 ++- rplos-0.8.0/rplos/R/journalnamekey.R | 18 rplos-0.8.0/rplos/R/onload.R |only rplos-0.8.0/rplos/R/plosabstract.R | 13 rplos-0.8.0/rplos/R/plosauthor.R | 12 rplos-0.8.0/rplos/R/plosfigtabcaps.R | 12 rplos-0.8.0/rplos/R/plossubject.R | 12 rplos-0.8.0/rplos/R/plostitle.R | 12 rplos-0.8.0/rplos/R/plosviews.R | 10 rplos-0.8.0/rplos/R/plosword.R | 24 - rplos-0.8.0/rplos/R/plot_throughtime.R | 33 - rplos-0.8.0/rplos/R/rplos-package.R | 39 + rplos-0.8.0/rplos/R/searchplos.R | 201 +++----- rplos-0.8.0/rplos/R/zzz.R | 34 - rplos-0.8.0/rplos/README.md | 358 ++++++++------- rplos-0.8.0/rplos/build/vignette.rds |binary rplos-0.8.0/rplos/inst/doc/facethighlight.Rmd | 86 +-- rplos-0.8.0/rplos/inst/doc/facethighlight.html | 88 ++- rplos-0.8.0/rplos/inst/doc/fulltext.Rmd | 193 ++------ rplos-0.8.0/rplos/inst/doc/fulltext.html | 192 ++------ rplos-0.8.0/rplos/inst/doc/rplos_vignette.Rmd | 168 +++---- rplos-0.8.0/rplos/inst/doc/rplos_vignette.html | 168 +++---- rplos-0.8.0/rplos/inst/schema_new.xml |only rplos-0.8.0/rplos/inst/vign/facethighlight.Rmd | 20 rplos-0.8.0/rplos/inst/vign/facethighlight.md | 86 +-- rplos-0.8.0/rplos/inst/vign/figure/plosword1plot-1.png |binary rplos-0.8.0/rplos/inst/vign/figure/throughtime1-1.png |binary rplos-0.8.0/rplos/inst/vign/fulltext.Rmd | 49 -- rplos-0.8.0/rplos/inst/vign/fulltext.md | 193 ++------ rplos-0.8.0/rplos/inst/vign/rplos_vignette.Rmd | 56 +- rplos-0.8.0/rplos/inst/vign/rplos_vignette.md | 168 +++---- rplos-0.8.0/rplos/man/addmissing.Rd | 1 rplos-0.8.0/rplos/man/citations-defunct.Rd |only rplos-0.8.0/rplos/man/concat_todf.Rd | 1 rplos-0.8.0/rplos/man/crossref-defunct.Rd | 1 rplos-0.8.0/rplos/man/facetplos.Rd | 38 - rplos-0.8.0/rplos/man/formatarticleurl.Rd | 1 rplos-0.8.0/rplos/man/full_text_urls.Rd | 11 rplos-0.8.0/rplos/man/highbrow.Rd | 3 rplos-0.8.0/rplos/man/highplos.Rd | 27 - rplos-0.8.0/rplos/man/insertnones.Rd | 1 rplos-0.8.0/rplos/man/isocodes.Rd | 1 rplos-0.8.0/rplos/man/journalnamekey.Rd | 8 rplos-0.8.0/rplos/man/plos_fulltext.Rd | 34 - rplos-0.8.0/rplos/man/plosabstract.Rd | 30 - rplos-0.8.0/rplos/man/plosauthor.Rd | 29 - rplos-0.8.0/rplos/man/plosfields.Rd | 1 rplos-0.8.0/rplos/man/plosfigtabcaps.Rd | 29 - rplos-0.8.0/rplos/man/plossubject.Rd | 29 - rplos-0.8.0/rplos/man/plostitle.Rd | 29 - rplos-0.8.0/rplos/man/plosviews.Rd | 4 rplos-0.8.0/rplos/man/plosword.Rd | 16 rplos-0.8.0/rplos/man/plot_throughtime.Rd | 7 rplos-0.8.0/rplos/man/rplos-defunct.Rd | 4 rplos-0.8.0/rplos/man/rplos.Rd | 35 + rplos-0.8.0/rplos/man/searchplos.Rd | 50 +- rplos-0.8.0/rplos/tests/testthat/test-facetplos.R | 30 - rplos-0.8.0/rplos/tests/testthat/test-formatarticleurl.R | 4 rplos-0.8.0/rplos/tests/testthat/test-highbrow.R | 12 rplos-0.8.0/rplos/tests/testthat/test-highplos.R | 25 - rplos-0.8.0/rplos/tests/testthat/test-plosabstract.R | 15 rplos-0.8.0/rplos/tests/testthat/test-plosauthor.R | 2 rplos-0.8.0/rplos/tests/testthat/test-plosfigtabcaps.R | 1 rplos-0.8.0/rplos/tests/testthat/test-plossubject.R | 1 rplos-0.8.0/rplos/tests/testthat/test-plostitle.R | 4 rplos-0.8.0/rplos/tests/testthat/test-plosviews.R | 7 rplos-0.8.0/rplos/tests/testthat/test-plosword.R | 2 rplos-0.8.0/rplos/tests/testthat/test-plot_throughtime.R | 3 rplos-0.8.0/rplos/tests/testthat/test-searchplos.R | 4 rplos-0.8.0/rplos/tools |only rplos-0.8.0/rplos/vignettes/facethighlight.Rmd | 86 +-- rplos-0.8.0/rplos/vignettes/fulltext.Rmd | 193 ++------ rplos-0.8.0/rplos/vignettes/rplos_vignette.Rmd | 168 +++---- 86 files changed, 1736 insertions(+), 1918 deletions(-)
Title: Select and Download Climate Data from 'DWD' (German Weather
Service)
Description: Handle climate data from the 'DWD' ('Deutscher Wetterdienst', see
<https://www.dwd.de/EN/climate_environment/cdc/cdc.html> for more information).
Choose files with 'selectDWD()', download and process data sets with 'dataDWD()' and 'readDWD()'.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between rdwd versions 0.8.0 dated 2017-06-09 and 0.9.0 dated 2017-11-03
DESCRIPTION | 15 +- MD5 | 60 +++++----- NAMESPACE | 3 NEWS | 17 ++- R/createIndex.R | 19 +-- R/dataDWD.R | 46 ++++---- R/dirDWD.R | 10 - R/findID.R | 19 +-- R/indexFTP.R | 15 +- R/lldist.R | 12 +- R/nearbyStations.R | 277 +++++++++++++++++++++++++------------------------- R/rdwd-package.R | 38 +++--- R/readDWD.R | 172 ++++++++++++++++++------------- R/selectDWD.R | 26 ++-- README.md | 7 - build/vignette.rds |binary inst/doc/mapDWD.html | 20 +-- inst/doc/rdwd.R | 4 inst/doc/rdwd.Rmd | 8 - inst/doc/rdwd.html | 82 +++++++------- man/createIndex.Rd | 2 man/dataDWD.Rd | 16 +- man/index.Rd | 2 man/indexFTP.Rd | 2 man/lldist.Rd | 2 man/nearbyStations.Rd | 2 man/rdwd.Rd | 4 man/readDWD.Rd | 24 ++-- man/rowDisplay.Rd | 2 man/selectDWD.Rd | 6 - vignettes/rdwd.Rmd | 8 - 31 files changed, 496 insertions(+), 424 deletions(-)
Title: 'DataCite' Client for 'OAI-PMH' Methods and their Search API
Description: Client for the web service methods provided
by 'DataCite' (<https://www.datacite.org/>), including functions to interface with
their 'OAI-PMH' 'metadata' service, and a 'RESTful' search API. The API
is backed by 'SOLR', allowing expressive queries, including faceting,
statistics on variables, and 'more-like-this' queries.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rdatacite versions 0.1.0 dated 2016-02-11 and 0.3.0 dated 2017-11-03
rdatacite-0.1.0/rdatacite/tests/testthat/test_dc_search.R |only rdatacite-0.3.0/rdatacite/DESCRIPTION | 16 rdatacite-0.3.0/rdatacite/MD5 | 59 + rdatacite-0.3.0/rdatacite/NAMESPACE | 13 rdatacite-0.3.0/rdatacite/NEWS.md | 19 rdatacite-0.3.0/rdatacite/R/dc_data_center.R |only rdatacite-0.3.0/rdatacite/R/dc_data_centers.R |only rdatacite-0.3.0/rdatacite/R/dc_member.R |only rdatacite-0.3.0/rdatacite/R/dc_members.R |only rdatacite-0.3.0/rdatacite/R/dc_oai_identify.R | 7 rdatacite-0.3.0/rdatacite/R/dc_search.R | 81 +- rdatacite-0.3.0/rdatacite/R/dc_work.R |only rdatacite-0.3.0/rdatacite/R/dc_works.R |only rdatacite-0.3.0/rdatacite/R/onload.R |only rdatacite-0.3.0/rdatacite/R/rdatacite-package.R | 44 - rdatacite-0.3.0/rdatacite/R/rest_helpers.R |only rdatacite-0.3.0/rdatacite/R/zzz.r | 9 rdatacite-0.3.0/rdatacite/README.md | 316 +++++++--- rdatacite-0.3.0/rdatacite/inst/ignore/dc_person.R |only rdatacite-0.3.0/rdatacite/man/Prefixes.Rd | 31 rdatacite-0.3.0/rdatacite/man/dc_data_center.Rd |only rdatacite-0.3.0/rdatacite/man/dc_data_centers.Rd |only rdatacite-0.3.0/rdatacite/man/dc_member.Rd |only rdatacite-0.3.0/rdatacite/man/dc_members.Rd |only rdatacite-0.3.0/rdatacite/man/dc_oai_getrecord.Rd | 1 rdatacite-0.3.0/rdatacite/man/dc_oai_identify.Rd | 7 rdatacite-0.3.0/rdatacite/man/dc_oai_listidentifiers.Rd | 1 rdatacite-0.3.0/rdatacite/man/dc_oai_listmetadataformats.Rd | 1 rdatacite-0.3.0/rdatacite/man/dc_oai_listrecords.Rd | 1 rdatacite-0.3.0/rdatacite/man/dc_oai_listsets.Rd | 1 rdatacite-0.3.0/rdatacite/man/dc_search.Rd | 102 +-- rdatacite-0.3.0/rdatacite/man/dc_work.Rd |only rdatacite-0.3.0/rdatacite/man/dc_works.Rd |only rdatacite-0.3.0/rdatacite/man/rdatacite-package.Rd | 38 - rdatacite-0.3.0/rdatacite/tests/testthat/test-dc_oai_getrecord.R | 28 rdatacite-0.3.0/rdatacite/tests/testthat/test-dc_oai_listidentifiers.R | 12 rdatacite-0.3.0/rdatacite/tests/testthat/test-dc_oai_listrecords.R | 2 rdatacite-0.3.0/rdatacite/tests/testthat/test-dc_oai_listsets.R | 2 rdatacite-0.3.0/rdatacite/tests/testthat/test-dc_search.R |only 39 files changed, 515 insertions(+), 276 deletions(-)
Title: Toolkit for Encryption, Signatures and Certificates Based on
OpenSSL
Description: Bindings to OpenSSL libssl and libcrypto, plus custom SSH pubkey parsers.
Supports RSA, DSA and EC curves P-256, P-384 and P-521. Cryptographic signatures
can either be created and verified manually or via x509 certificates. AES can be
used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public
key) encryption or EC for Diffie Hellman. High-level envelope functions combine
RSA and AES for encrypting arbitrary sized data. Other utilities include key
generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure
random number generator, and 'bignum' math methods for manually performing
crypto calculations on large multibyte integers.
Author: Jeroen Ooms [cre, aut],
Oliver Keyes [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between openssl versions 0.9.7 dated 2017-09-06 and 0.9.8 dated 2017-11-03
DESCRIPTION | 6 MD5 | 20 +-- NEWS | 3 R/aes.R | 2 build/vignette.rds |binary configure | 4 inst/doc/bignum.html | 247 +++++++++++++++++++++++++++++++++++---- inst/doc/crypto_hashing.html | 223 +++++++++++++++++++++++++++++++++-- inst/doc/keys.html | 269 +++++++++++++++++++++++++++++++++++++------ inst/doc/secure_rng.html | 233 ++++++++++++++++++++++++++++++++++--- man/aes_cbc.Rd | 2 11 files changed, 896 insertions(+), 113 deletions(-)
Title: Mixtures of von Mises-Fisher Distributions
Description: Fit and simulate mixtures of von Mises-Fisher distributions.
Author: Kurt Hornik [aut, cre],
Bettina Grün [aut]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between movMF versions 0.2-1 dated 2017-02-21 and 0.2-2 dated 2017-11-03
DESCRIPTION | 8 +++--- MD5 | 18 ++++++++------- build/vignette.rds |binary inst/NEWS.Rd | 6 +++++ inst/doc/movMF.R | 62 ++++++++++++++++++++++++++++++---------------------- inst/doc/movMF.Rnw | 15 ++++++++---- inst/doc/movMF.pdf |binary inst/po |only po |only vignettes/movMF.Rnw | 15 ++++++++---- vignettes/vMF.bib | 4 +-- 11 files changed, 78 insertions(+), 50 deletions(-)
Title: Advanced Graphics and Image-Processing in R
Description: Bindings to 'ImageMagick': the most comprehensive open-source image
processing library available. Supports many common formats (png, jpeg, tiff,
pdf, etc) and manipulations (rotate, scale, crop, trim, flip, blur, etc).
All operations are vectorized via the Magick++ STL meaning they operate either
on a single frame or a series of frames for working with layers, collages,
or animation. In RStudio images are automatically previewed when printed to
the console, resulting in an interactive editing environment. The latest
version of the package includes a native graphics device for creating
in-memory graphics or drawing onto images using pixel coordinates.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between magick versions 1.4 dated 2017-10-05 and 1.5 dated 2017-11-03
DESCRIPTION | 12 MD5 | 18 NAMESPACE | 2 NEWS | 4 R/base.R | 20 build/vignette.rds |binary inst/doc/intro.R | 46 + inst/doc/intro.Rmd | 55 + inst/doc/intro.html | 1548 ++++++++++++++++++++++++++++++++++++++++++++++++---- vignettes/intro.Rmd | 55 + 10 files changed, 1598 insertions(+), 162 deletions(-)
Title: Convolution-Based Nonstationary Spatial Modeling
Description: Fits convolution-based nonstationary
Gaussian process models to point-referenced spatial data. The nonstationary
covariance function allows the user to specify the underlying correlation
structure and which spatial dependence parameters should be allowed to
vary over space: the anisotropy, nugget variance, and process variance.
The parameters are estimated via maximum likelihood, using a local
likelihood approach. Also provided are functions to fit stationary spatial
models for comparison, calculate the Kriging predictor and standard errors,
and create various plots to visualize nonstationarity.
Author: Mark D. Risser [aut, cre]
Maintainer: Mark D. Risser <markdrisser@gmail.com>
Diff between convoSPAT versions 1.2 dated 2017-04-12 and 1.2.4 dated 2017-11-03
convoSPAT-1.2.4/convoSPAT/DESCRIPTION | 8 convoSPAT-1.2.4/convoSPAT/MD5 | 34 convoSPAT-1.2.4/convoSPAT/NAMESPACE | 4 convoSPAT-1.2.4/convoSPAT/R/convoSPAT_fitpred.R | 1307 +++++++++---- convoSPAT-1.2.4/convoSPAT/R/convoSPAT_paramEst.R | 348 +-- convoSPAT-1.2.4/convoSPAT/inst |only convoSPAT-1.2.4/convoSPAT/man/Aniso_fit.Rd | 38 convoSPAT-1.2.4/convoSPAT/man/NSconvo_fit.Rd | 48 convoSPAT-1.2.4/convoSPAT/man/make_global_loglik1.Rd | 4 convoSPAT-1.2.4/convoSPAT/man/make_global_loglik1_kappa.Rd | 4 convoSPAT-1.2.4/convoSPAT/man/make_global_loglik2.Rd | 6 convoSPAT-1.2.4/convoSPAT/man/make_global_loglik2_kappa.Rd | 7 convoSPAT-1.2.4/convoSPAT/man/make_global_loglik3.Rd | 4 convoSPAT-1.2.4/convoSPAT/man/make_global_loglik3_kappa.Rd | 4 convoSPAT-1.2.4/convoSPAT/man/make_global_loglik4_kappa.Rd | 7 convoSPAT-1.2.4/convoSPAT/man/make_local_lik.Rd |only convoSPAT-1.2.4/convoSPAT/man/predict.Aniso.Rd | 8 convoSPAT-1.2.4/convoSPAT/man/predict.NSconvo.Rd | 8 convoSPAT-1.2/convoSPAT/man/make_aniso_loglik.Rd |only convoSPAT-1.2/convoSPAT/man/make_aniso_loglik_kappa.Rd |only 20 files changed, 1287 insertions(+), 552 deletions(-)
Title: R Interface to InfluxDB
Description: An R interface to the InfluxDB time series database <https://www.influxdata.com>. This package allows you to fetch and write time series data from/to an InfluxDB server. Additionally, handy wrappers for the Influx Query Language (IQL) to manage and explore a remote database are provided.
Author: Dominik Leutnant [aut, cre] (0000-0003-3293-2315)
Maintainer: Dominik Leutnant <leutnant@fh-muenster.de>
Diff between influxdbr versions 0.13.0 dated 2017-08-21 and 0.14.0 dated 2017-11-03
influxdbr-0.13.0/influxdbr/R/influxdb_main.R |only influxdbr-0.13.0/influxdbr/man/influx_authentication_and_authorization_helpers.Rd |only influxdbr-0.13.0/influxdbr/man/influx_database_management_helpers.Rd |only influxdbr-0.13.0/influxdbr/man/influx_schema_exploration_helpers.Rd |only influxdbr-0.14.0/influxdbr/DESCRIPTION | 16 influxdbr-0.14.0/influxdbr/MD5 | 63 - influxdbr-0.14.0/influxdbr/NAMESPACE | 64 - influxdbr-0.14.0/influxdbr/NEWS.md | 42 influxdbr-0.14.0/influxdbr/R/influxdb_authentication_and_authorization.R | 250 ++-- influxdbr-0.14.0/influxdbr/R/influxdb_connection.R |only influxdbr-0.14.0/influxdbr/R/influxdb_database_management.R | 396 +++--- influxdbr-0.14.0/influxdbr/R/influxdb_diagnostics.R | 98 - influxdbr-0.14.0/influxdbr/R/influxdb_helper.R |only influxdbr-0.14.0/influxdbr/R/influxdb_json_parser.R | 539 ++++---- influxdbr-0.14.0/influxdbr/R/influxdb_line_protocol.R |only influxdbr-0.14.0/influxdbr/R/influxdb_post.R |only influxdbr-0.14.0/influxdbr/R/influxdb_query.R |only influxdbr-0.14.0/influxdbr/R/influxdb_schema_exploration.R | 314 ++--- influxdbr-0.14.0/influxdbr/R/influxdb_select.R | 157 +- influxdbr-0.14.0/influxdbr/R/influxdb_write.R |only influxdbr-0.14.0/influxdbr/R/influxdbr.R | 42 influxdbr-0.14.0/influxdbr/README.md | 604 +++++----- influxdbr-0.14.0/influxdbr/man/check_srv_comm.Rd |only influxdbr-0.14.0/influxdbr/man/create_database.Rd |only influxdbr-0.14.0/influxdbr/man/create_user.Rd |only influxdbr-0.14.0/influxdbr/man/get_precision_divisor.Rd |only influxdbr-0.14.0/influxdbr/man/influx_connection.Rd | 104 - influxdbr-0.14.0/influxdbr/man/influx_ping.Rd | 48 influxdbr-0.14.0/influxdbr/man/influx_post.Rd | 50 influxdbr-0.14.0/influxdbr/man/influx_query.Rd | 86 - influxdbr-0.14.0/influxdbr/man/influx_select.Rd | 102 - influxdbr-0.14.0/influxdbr/man/influx_write.Rd | 123 +- influxdbr-0.14.0/influxdbr/man/influxdbr.Rd | 20 influxdbr-0.14.0/influxdbr/man/show_databases.Rd |only influxdbr-0.14.0/influxdbr/man/show_diagnostics.Rd | 40 influxdbr-0.14.0/influxdbr/man/show_stats.Rd | 50 influxdbr-0.14.0/influxdbr/tests/testthat.R | 8 influxdbr-0.14.0/influxdbr/tests/testthat/test_query.R | 252 ++-- influxdbr-0.14.0/influxdbr/tests/testthat/test_schema_exploration.R | 80 - influxdbr-0.14.0/influxdbr/tests/testthat/test_write.R | 294 +++- 40 files changed, 2069 insertions(+), 1773 deletions(-)
Title: 'tint' is not 'Tufte'
Description: A 'tufte'-alike style for 'rmarkdown'.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between tint versions 0.0.3 dated 2016-10-15 and 0.0.4 dated 2017-11-03
ChangeLog | 41 ++++++++++++++++++++ DESCRIPTION | 14 +++--- MD5 | 31 +++++++++------ R/html.R | 2 R/pdf.R | 13 +++--- README.md | 34 +++++++++++----- build |only inst/NEWS.Rd | 10 ++++ inst/doc |only inst/examples/simpleHtml.Rmd | 4 - inst/examples/simplePdf.Rmd | 4 - inst/rmarkdown/templates/html/skeleton/skeleton.Rmd | 6 -- inst/rmarkdown/templates/pdf/skeleton/skeleton.Rmd | 7 --- man/tintHtml.Rd | 18 +++++--- vignettes |only 15 files changed, 129 insertions(+), 55 deletions(-)
Title: Versatile Pie Charts, Bar Charts and Box Plots using Patterns,
Colors and Images
Description: Creates aesthetically pleasing and informative pie charts, bar charts and box plots with colors, patterns, and images.
Author: Chunqiao Luo [aut, cre],
Shasha Bai [aut]
Maintainer: Chunqiao Luo <chunqiaoluo@gmail.com>
Diff between patternplot versions 0.1 dated 2016-12-20 and 0.2 dated 2017-11-03
patternplot-0.1/patternplot/inst/img/chessboard.png |only patternplot-0.1/patternplot/inst/img/dots.png |only patternplot-0.1/patternplot/inst/img/lines.png |only patternplot-0.2/patternplot/DESCRIPTION | 35 - patternplot-0.2/patternplot/MD5 | 60 +- patternplot-0.2/patternplot/NAMESPACE | 8 patternplot-0.2/patternplot/R/RcppExports.R | 6 patternplot-0.2/patternplot/R/imagebar.R |only patternplot-0.2/patternplot/R/imageboxplot.R |only patternplot-0.2/patternplot/R/imagepie.R | 7 patternplot-0.2/patternplot/R/pattern.R | 30 + patternplot-0.2/patternplot/R/patternbar.R |only patternplot-0.2/patternplot/R/patternboxplot.R |only patternplot-0.2/patternplot/R/patternpie.R | 27 - patternplot-0.2/patternplot/build/vignette.rds |binary patternplot-0.2/patternplot/inst/CITATION | 2 patternplot-0.2/patternplot/inst/doc/patternplot-intro.R | 166 +++++--- patternplot-0.2/patternplot/inst/doc/patternplot-intro.Rmd | 199 ++++++--- patternplot-0.2/patternplot/inst/doc/patternplot-intro.html | 206 ++++++---- patternplot-0.2/patternplot/inst/extdata |only patternplot-0.2/patternplot/inst/img/childcare.jpg |only patternplot-0.2/patternplot/inst/img/food.jpg |only patternplot-0.2/patternplot/inst/img/housing.jpg |only patternplot-0.2/patternplot/inst/img/oranges.jpg |only patternplot-0.2/patternplot/inst/img/strawberries.jpg |only patternplot-0.2/patternplot/inst/img/watermelons.jpg |only patternplot-0.2/patternplot/man/imagebar.Rd |only patternplot-0.2/patternplot/man/imageboxplot.Rd |only patternplot-0.2/patternplot/man/imagepie.Rd | 39 - patternplot-0.2/patternplot/man/patternbar.Rd |only patternplot-0.2/patternplot/man/patternboxplot.Rd |only patternplot-0.2/patternplot/man/patternpie.Rd | 51 +- patternplot-0.2/patternplot/src/RcppExports.cpp | 29 + patternplot-0.2/patternplot/src/imagetodf2.cpp |only patternplot-0.2/patternplot/src/patternplot_init.c |only patternplot-0.2/patternplot/vignettes/example-imagebar.R |only patternplot-0.2/patternplot/vignettes/example-imageboxplot.R |only patternplot-0.2/patternplot/vignettes/example-imagepie.R | 28 - patternplot-0.2/patternplot/vignettes/example-patternbar.R |only patternplot-0.2/patternplot/vignettes/example-patternboxplot.R |only patternplot-0.2/patternplot/vignettes/example-patternpie.R | 18 patternplot-0.2/patternplot/vignettes/patternplot-intro.Rmd | 199 ++++++--- 42 files changed, 678 insertions(+), 432 deletions(-)
Title: Movement Data Visualization
Description: Tools to visualize movement data (e.g. from GPS tracking) and temporal changes of environmental data (e.g. from remote sensing) by creating video animations.
Author: Jakob Schwalb-Willmann [aut, cre]
Maintainer: Jakob Schwalb-Willmann <movevis@schwalb-willmann.de>
Diff between moveVis versions 0.9.5 dated 2017-08-21 and 0.9.6 dated 2017-11-03
moveVis-0.9.5/moveVis/R/get_imconvert.R |only moveVis-0.9.5/moveVis/man/get_imconvert.Rd |only moveVis-0.9.6/moveVis/DESCRIPTION | 17 moveVis-0.9.6/moveVis/MD5 | 32 moveVis-0.9.6/moveVis/NAMESPACE | 33 moveVis-0.9.6/moveVis/NEWS | 55 moveVis-0.9.6/moveVis/R/animate_move.R | 1856 +++++++++++---------------- moveVis-0.9.6/moveVis/R/animate_raster.R | 77 - moveVis-0.9.6/moveVis/R/animate_stats.R | 73 - moveVis-0.9.6/moveVis/R/get_formats.R |only moveVis-0.9.6/moveVis/R/get_libraries.R |only moveVis-0.9.6/moveVis/R/moveVis-internal.R | 130 - moveVis-0.9.6/moveVis/R/pkgname.R | 4 moveVis-0.9.6/moveVis/README.md | 37 moveVis-0.9.6/moveVis/man/animate_move.Rd | 117 + moveVis-0.9.6/moveVis/man/animate_raster.Rd | 55 moveVis-0.9.6/moveVis/man/animate_stats.Rd | 74 - moveVis-0.9.6/moveVis/man/get_formats.Rd |only moveVis-0.9.6/moveVis/man/get_libraries.Rd |only moveVis-0.9.6/moveVis/man/moveVis-package.Rd | 4 20 files changed, 1114 insertions(+), 1450 deletions(-)
Title: Generalised Management Strategy Evaluation Simulator
Description: Integrates game theory and ecological theory to construct
social-ecological models that simulate the management of populations and
stakeholder actions. These models build off of a previously developed
management strategy evaluation (MSE) framework to simulate all aspects of
management: population dynamics, manager observation of populations, manager
decision making, and stakeholder responses to management decisions. The
newly developed generalised management strategy evaluation (GMSE)
framework uses genetic algorithms to mimic the decision-making process of
managers and stakeholders under conditions of change, uncertainty, and
conflict. Simulations can be run using gmse(), gmse_apply(), and
gmse_gui() functions.
Author: A. Bradley Duthie [aut, cre] (0000-0001-8343-4995),
Nils Bunnefeld [ctb, fnd] (0000-0002-1349-4463),
Jeremy Cusack [ctb] (0000-0003-3004-1586),
Isabel Jones [ctb] (0000-0002-8361-1370),
Erlend Nilsen [ctb] (0000-0002-5119-8331),
Rocio Pozo [ctb] (0000-0002-7546-8076),
Sarobidy Rakotonarivo [ctb] (0000-0002-8032-1431),
Bram Van Moorter [ctb] (0000-0002-3196-1993)
Maintainer: A. Bradley Duthie <brad.duthie@gmail.com>
Diff between GMSE versions 0.3.1.8 dated 2017-11-02 and 0.3.1.9 dated 2017-11-03
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- R/gmse.R | 12 ++++++------ R/gmse_apply.R | 12 ++++++------ R/manager.R | 3 ++- R/user.R | 3 ++- src/game.c | 6 +++--- src/manager.c | 19 ++++--------------- src/observation.c | 4 ++-- src/user.c | 11 ++++++----- tests/testthat/test-manager.R | 2 +- tests/testthat/test-user.R | 2 +- 12 files changed, 47 insertions(+), 55 deletions(-)
Title: Dynamic Range Boxes
Description: Improves the concept of multivariate range boxes, which is highly susceptible for outliers and does not consider the distribution of the data. The package uses dynamic range boxes to overcome these problems.
Author: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>,
Wolfgang Trutschnig <Wolfgang.Trutschnig@sbg.ac.at>,
Robert R. Junker <Robert.Junker@sbg.ac.at>,
Jonas Kuppler <Jonas.Kuppler@uni-duesseldorf.de>,
Arne Bathke <Arne.Bathke@sbg.ac.at>
Maintainer: Manuela Schreyer <manuelalarissa.schreyer@sbg.ac.at>
Diff between dynRB versions 0.9 dated 2016-10-24 and 0.10 dated 2017-11-03
DESCRIPTION | 7 +++---- MD5 | 12 ++++++------ man/dynRB-package.Rd | 6 +++--- man/dynRB_Pn.Rd | 2 +- man/dynRB_VPa.Rd | 2 +- man/dynRB_Vn.Rd | 2 +- man/overview.Rd | 2 +- 7 files changed, 16 insertions(+), 17 deletions(-)
Title: Integrated Taxonomic Information System Client
Description: An interface to the Integrated Taxonomic Information System ('ITIS')
(<https://www.itis.gov>). Includes functions to work with the 'ITIS' REST
'API' methods (<https://www.itis.gov/ws_description.html>), as well as the
'Solr' web service (<https://www.itis.gov/solr_documentation.html>).
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between ritis versions 0.6.0 dated 2017-09-27 and 0.7.0 dated 2017-11-03
DESCRIPTION | 12 ++++++------ MD5 | 33 +++++++++++++++++---------------- NEWS.md | 9 +++++++++ R/itis_facet.R | 12 ++++++++---- R/itis_group.R | 13 +++++++++---- R/itis_highlight.R | 12 ++++++++---- R/itis_search.R | 17 +++++++++++++---- R/onload.R |only R/solr.R | 16 ++++++++-------- R/zzz.R | 6 ++++++ build/vignette.rds |binary man/itis_facet.Rd | 12 ++++++++++-- man/itis_group.Rd | 12 ++++++++++-- man/itis_highlight.Rd | 12 ++++++++++-- man/itis_search.Rd | 12 ++++++++++-- man/solr.Rd | 13 +++++++------ tests/testthat/test-itis_facet.R | 6 ++++-- tests/testthat/test-itis_highlight.R | 13 +++++++------ 18 files changed, 142 insertions(+), 68 deletions(-)
Title: Analyzing Real-Time Quantitative PCR Data
Description: Calculates the amplification efficiency and curves from real-time
quantitative PCR (Polymerase Chain Reaction) data. Estimates the relative
expression from PCR data using the double delta CT and the standard curve
methods Livak & Schmittgen (2001) <doi:10.1006/meth.2001.1262>. Tests for
statistical significance using two-group tests and linear regression
Yuan et al. (2006) <doi: 10.1186/1471-2105-7-85>.
Author: Mahmoud Ahmed [aut, cre]
Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy@students.kasralainy.edu.eg>
Diff between pcr versions 1.0.0 dated 2017-11-03 and 1.0.1 dated 2017-11-03
DESCRIPTION | 12 ++++++------ MD5 | 4 ++-- inst/doc/qpcr_analysis.pdf |binary 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Make Dealing with Dates a Little Easier
Description: Functions to work with date-times and time-spans: fast and user
friendly parsing of date-time data, extraction and updating of components of
a date-time (years, months, days, hours, minutes, and seconds), algebraic
manipulation on date-time and time-span objects. The 'lubridate' package has
a consistent and memorable syntax that makes working with dates easy and
fun.
Parts of the 'CCTZ' source code, released under the Apache 2.0 License,
are included in this package. See <https://github.com/google/cctz> for more
details.
Author: Vitalie Spinu [aut, cre],
Garrett Grolemund [aut],
Hadley Wickham [aut],
Ian Lyttle [ctb],
Imanuel Constigan [ctb],
Jason Law [ctb],
Doug Mitarotonda [ctb],
Joseph Larmarange [ctb],
Jonathan Boiser [ctb],
Chel Hee Lee [ctb]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>
Diff between lubridate versions 1.7.0 dated 2017-10-29 and 1.7.1 dated 2017-11-03
lubridate-1.7.0/lubridate/R/ops-%m+%.r |only lubridate-1.7.1/lubridate/DESCRIPTION | 17 +++-- lubridate-1.7.1/lubridate/MD5 | 52 ++++++++--------- lubridate-1.7.1/lubridate/NEWS.md | 16 ++++- lubridate-1.7.1/lubridate/R/accessors-date.R | 4 - lubridate-1.7.1/lubridate/R/coercion.r | 6 - lubridate-1.7.1/lubridate/R/durations.r | 4 - lubridate-1.7.1/lubridate/R/intervals.r | 4 - lubridate-1.7.1/lubridate/R/ops-m+.r |only lubridate-1.7.1/lubridate/R/periods.r | 4 - lubridate-1.7.1/lubridate/R/round.r | 34 +++++------ lubridate-1.7.1/lubridate/R/time-zones.r | 2 lubridate-1.7.1/lubridate/R/timespans.r | 8 +- lubridate-1.7.1/lubridate/R/update.r | 2 lubridate-1.7.1/lubridate/R/zzz.R | 27 +++++++- lubridate-1.7.1/lubridate/man/DateTimeUpdate.Rd | 2 lubridate-1.7.1/lubridate/man/as.period.Rd | 2 lubridate-1.7.1/lubridate/man/date.Rd | 4 - lubridate-1.7.1/lubridate/man/duration.Rd | 4 - lubridate-1.7.1/lubridate/man/interval.Rd | 4 - lubridate-1.7.1/lubridate/man/mplus.Rd | 2 lubridate-1.7.1/lubridate/man/period.Rd | 4 - lubridate-1.7.1/lubridate/man/rollback.Rd | 2 lubridate-1.7.1/lubridate/man/round_date.Rd | 8 +- lubridate-1.7.1/lubridate/man/timespan.Rd | 8 +- lubridate-1.7.1/lubridate/man/with_tz.Rd | 2 lubridate-1.7.1/lubridate/tests/testthat/test-Dates.R | 14 ++++ lubridate-1.7.1/lubridate/tests/testthat/test-POSIXt.R | 25 ++++++++ 28 files changed, 167 insertions(+), 94 deletions(-)
Title: Utility Functions by Youyi, Krisz and Others
Description: A miscellaneous set of functions for printing, plotting, kernels, etc. Additional contributors are acknowledged on individual function help pages.
Author: Youyi Fong <youyifong@gmail.com>, Krisztian Sebestyen <ksebestyen@gmail.com>
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between kyotil versions 2017.6-1 dated 2017-05-31 and 2017.10-31 dated 2017-11-03
DESCRIPTION | 6 - MD5 | 36 ++++----- NAMESPACE | 11 +- R/base.R | 14 ++- R/matrix.R | 2 R/misc.R | 151 ++++++++++++++++++++++++++++++++++---- R/plotting.R | 131 ++++++++++++++------------------ R/print.R | 68 ++++++++++------- R/random.R | 27 ++++++ R/regression.model.functions.R | 23 ++++- R/stat.R | 16 ++++ man/base.Rd | 24 +++++- man/get.sim.res.Rd | 27 +++++- man/misc.Rd | 18 +++- man/plotting.Rd | 37 +++++---- man/print.Rd | 47 ++++++++--- man/random.Rd | 25 ++++++ man/regression.model.functions.Rd | 2 man/stat.Rd | 5 + 19 files changed, 479 insertions(+), 191 deletions(-)
Title: Regression Modelling using I-Priors
Description: Provides methods to perform and analyse I-prior regression models.
Estimation is done either via direct optimisation of the log-likelihood or
an EM algorithm.
Author: Haziq Jamil [aut, cre]
Maintainer: Haziq Jamil <haziq.jamil@gmail.com>
Diff between iprior versions 0.6.5 dated 2017-06-11 and 0.7.0 dated 2017-11-03
iprior-0.6.5/iprior/R/Hlam.R |only iprior-0.6.5/iprior/R/fbmOptim.R |only iprior-0.6.5/iprior/R/fisher.R |only iprior-0.6.5/iprior/R/ipriorEM.R |only iprior-0.6.5/iprior/R/ipriorEM_helper.R |only iprior-0.6.5/iprior/R/ipriorOptim.R |only iprior-0.6.5/iprior/R/ipriorVB.R |only iprior-0.6.5/iprior/R/logLik.R |only iprior-0.6.5/iprior/R/plot.R |only iprior-0.6.5/iprior/R/predict.R |only iprior-0.6.5/iprior/R/progress.R |only iprior-0.6.5/iprior/R/slope.R |only iprior-0.6.5/iprior/R/update.R |only iprior-0.6.5/iprior/R/vary.R |only iprior-0.6.5/iprior/R/varyinv.R |only iprior-0.6.5/iprior/data/datfbm.RData |only iprior-0.6.5/iprior/data/simdat.RData |only iprior-0.6.5/iprior/inst/doc/iprior_vignette.R |only iprior-0.6.5/iprior/inst/doc/iprior_vignette.Rmd |only iprior-0.6.5/iprior/inst/doc/iprior_vignette.html |only iprior-0.6.5/iprior/man/Hlam.Rd |only iprior-0.6.5/iprior/man/datfbm.Rd |only iprior-0.6.5/iprior/man/fbmOptim.Rd |only iprior-0.6.5/iprior/man/ipriorColPal.Rd |only iprior-0.6.5/iprior/man/ipriorOptim.Rd |only iprior-0.6.5/iprior/man/is.ipriorMod.Rd |only iprior-0.6.5/iprior/man/logLik.Rd |only iprior-0.6.5/iprior/man/plot.Rd |only iprior-0.6.5/iprior/man/progress.Rd |only iprior-0.6.5/iprior/man/simdat.Rd |only iprior-0.6.5/iprior/man/slope.Rd |only iprior-0.6.5/iprior/man/vary.Rd |only iprior-0.6.5/iprior/src/packagename_init.c |only iprior-0.6.5/iprior/tests/testthat/Rplots.pdf |only iprior-0.6.5/iprior/tests/testthat/test-1kernel.R |only iprior-0.6.5/iprior/tests/testthat/test-2kernel_loader.R |only iprior-0.6.5/iprior/tests/testthat/test-3kernel_loader_names.R |only iprior-0.6.5/iprior/tests/testthat/test-4high_order.R |only iprior-0.6.5/iprior/tests/testthat/test-5mixed_kernel.R |only iprior-0.6.5/iprior/tests/testthat/test-6iprior.R |only iprior-0.6.5/iprior/tests/testthat/test-7iprior_methods.R |only iprior-0.6.5/iprior/tests/testthat/test-8iprior_plot.R |only iprior-0.6.5/iprior/tests/testthat/test-9iprior_ot.R |only iprior-0.6.5/iprior/vignettes/iprior_vignette.Rmd |only iprior-0.7.0/iprior/DESCRIPTION | 23 iprior-0.7.0/iprior/MD5 | 136 + iprior-0.7.0/iprior/NAMESPACE | 105 + iprior-0.7.0/iprior/NEWS.md | 24 iprior-0.7.0/iprior/R/Accessor_functions.R |only iprior-0.7.0/iprior/R/Data.R | 126 + iprior-0.7.0/iprior/R/Kernel_functions.R | 424 ++---- iprior-0.7.0/iprior/R/Kernel_loader.R | 696 ++++------ iprior-0.7.0/iprior/R/Kernel_loader_helper.R |only iprior-0.7.0/iprior/R/LEGACY-Kernel_functions.R |only iprior-0.7.0/iprior/R/LEGACY-Kernel_loader.R |only iprior-0.7.0/iprior/R/LEGACY-Utilities.R |only iprior-0.7.0/iprior/R/Namespace.R | 21 iprior-0.7.0/iprior/R/Plots.R |only iprior-0.7.0/iprior/R/RcppExports.R | 8 iprior-0.7.0/iprior/R/Utilities.R | 499 +++---- iprior-0.7.0/iprior/R/fitted_and_predict.R |only iprior-0.7.0/iprior/R/iprior-package.R |only iprior-0.7.0/iprior/R/iprior.R | 624 +++----- iprior-0.7.0/iprior/R/ipriorMod_methods.R |only iprior-0.7.0/iprior/R/iprior_est_canonical.R |only iprior-0.7.0/iprior/R/iprior_est_direct.R |only iprior-0.7.0/iprior/R/iprior_est_em_closed.R |only iprior-0.7.0/iprior/R/iprior_est_em_reg.R |only iprior-0.7.0/iprior/R/iprior_est_fixed.R |only iprior-0.7.0/iprior/R/iprior_est_mixed.R |only iprior-0.7.0/iprior/R/iprior_est_nystrom.R |only iprior-0.7.0/iprior/R/iprior_est_parallel.R |only iprior-0.7.0/iprior/R/iprior_helper.R |only iprior-0.7.0/iprior/R/logLik_and_deviance.R |only iprior-0.7.0/iprior/README.md | 36 iprior-0.7.0/iprior/build/vignette.rds |binary iprior-0.7.0/iprior/inst/doc/iprior_paper.pdf |only iprior-0.7.0/iprior/inst/doc/iprior_paper.pdf.asis |only iprior-0.7.0/iprior/inst/doc/kernel_matrix.R | 2 iprior-0.7.0/iprior/inst/doc/kernel_matrix.Rmd | 8 iprior-0.7.0/iprior/inst/doc/kernel_matrix.html | 122 - iprior-0.7.0/iprior/man/Accessors.Rd |only iprior-0.7.0/iprior/man/as.time.Rd |only iprior-0.7.0/iprior/man/check_theta.Rd |only iprior-0.7.0/iprior/man/decimal_place.Rd |only iprior-0.7.0/iprior/man/gen_multilevel.Rd |only iprior-0.7.0/iprior/man/gen_smooth.Rd |only iprior-0.7.0/iprior/man/gg_colour_hue.Rd |only iprior-0.7.0/iprior/man/iprior.Rd | 255 ++- iprior-0.7.0/iprior/man/iprior_package.Rd |only iprior-0.7.0/iprior/man/is.iprior_x.Rd |only iprior-0.7.0/iprior/man/is.kern_x.Rd |only iprior-0.7.0/iprior/man/kernL.Rd | 178 +- iprior-0.7.0/iprior/man/kernL_old.Rd |only iprior-0.7.0/iprior/man/kernel.Rd | 101 - iprior-0.7.0/iprior/man/logLik.ipriorMod.Rd |only iprior-0.7.0/iprior/man/plot.ipriorMod.Rd |only iprior-0.7.0/iprior/man/predict.Rd | 66 iprior-0.7.0/iprior/man/sigma.Rd | 9 iprior-0.7.0/iprior/man/summary.ipriorMod.Rd |only iprior-0.7.0/iprior/man/update.ipriorMod.Rd |only iprior-0.7.0/iprior/src/RcppExports.cpp | 21 iprior-0.7.0/iprior/tests/testthat/test-01-kernels.R |only iprior-0.7.0/iprior/tests/testthat/test-02-kernel_loader.R |only iprior-0.7.0/iprior/tests/testthat/test-03-kernel_loader_helpers.R |only iprior-0.7.0/iprior/tests/testthat/test-04-iprior.R |only iprior-0.7.0/iprior/tests/testthat/test-05-fitted_and_predict.R |only iprior-0.7.0/iprior/tests/testthat/test-06-plots.R |only iprior-0.7.0/iprior/tests/testthat/test-07-ipriorMod_methods.R |only iprior-0.7.0/iprior/tests/testthat/test-08-iprior_helpers.R |only iprior-0.7.0/iprior/tests/testthat/test-09-utilities.R |only iprior-0.7.0/iprior/tests/testthat/test-LEGACY-kernel_loader.R |only iprior-0.7.0/iprior/vignettes/iprior2_test.Rmd |only iprior-0.7.0/iprior/vignettes/iprior_paper.pdf.asis |only iprior-0.7.0/iprior/vignettes/kernel_matrix.Rmd | 8 115 files changed, 1790 insertions(+), 1702 deletions(-)
Title: High-Performance Stemmer, Tokenizer, and Spell Checker for R
Description: A spell checker and morphological analyzer library designed for
languages with rich morphology and complex word compounding or character
encoding. The package can check and analyze individual words as well as
search for incorrect words within a text, latex, html or xml document. Use
the 'devtools' package to spell check R documentation with 'hunspell'.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between hunspell versions 2.6 dated 2017-06-28 and 2.7 dated 2017-11-03
hunspell-2.6/hunspell/inst/dict/README.txt |only hunspell-2.6/hunspell/src/register.c |only hunspell-2.7/hunspell/DESCRIPTION | 9 hunspell-2.7/hunspell/MD5 | 34 hunspell-2.7/hunspell/NEWS | 6 hunspell-2.7/hunspell/R/RcppExports.R | 16 hunspell-2.7/hunspell/build/vignette.rds |binary hunspell-2.7/hunspell/inst/dict/en_GB.aff | 34 hunspell-2.7/hunspell/inst/dict/en_GB.dic |12474 ++ hunspell-2.7/hunspell/inst/dict/en_US.aff | 285 hunspell-2.7/hunspell/inst/dict/en_US.dic |84955 +++++++----------- hunspell-2.7/hunspell/inst/dict/readme.txt |only hunspell-2.7/hunspell/inst/doc/intro.html | 3689 hunspell-2.7/hunspell/src/Makevars | 6 hunspell-2.7/hunspell/src/RcppExports.cpp | 33 hunspell-2.7/hunspell/src/check.cpp | 11 hunspell-2.7/hunspell/src/find.cpp | 6 hunspell-2.7/hunspell/src/utils.h | 1 hunspell-2.7/hunspell/tests/testthat/test_case.R |only hunspell-2.7/hunspell/tests/testthat/test_encodings.R | 4 20 files changed, 51326 insertions(+), 50237 deletions(-)
Title: Read and Write from the System Clipboard
Description: Simple utility functions to read from and write to the Windows,
OS X, and X11 clipboards.
Author: Matthew Lincoln [aut, cre],
Louis Maddox [ctb],
Steve Simpson [ctb],
Jennifer Bryan [ctb]
Maintainer: Matthew Lincoln <matthew.d.lincoln@gmail.com>
Diff between clipr versions 0.3.3 dated 2017-06-19 and 0.4.0 dated 2017-11-03
DESCRIPTION | 6 ++--- MD5 | 16 +++++++------- NAMESPACE | 1 NEWS.md | 5 ++++ R/linux_clipboard.R | 6 +---- R/sys_type.R | 49 +++++++++++++++++++++++++++++++++++-------- README.md | 3 +- man/clipr_available.Rd | 9 +++++++ tests/testthat/test_render.R | 17 +++++++++++--- 9 files changed, 83 insertions(+), 29 deletions(-)
Title: Black Box Optimization and Exploration of Parameter Space
Description: Performs prediction of a response function from simulated response values, allowing black-box optimization of functions estimated with some error. Includes a simple user interface for such applications, as well as more specialized functions designed to be called by the Migraine software (Rousset and Leblois, 2012 <doi:10.1093/molbev/MSR262>; Leblois et al., 2014 <doi:10.1093/molbev/msu212>; and see URL). The latter functions are used for prediction of likelihood surfaces and implied likelihood ratio confidence intervals, and for exploration of predictor space of the surface. Prediction of the response is based on ordinary Kriging (with residual error) of the input. Estimation of smoothing parameters is performed by generalized cross-validation.
Author: François Rousset [aut, cre, cph],
Raphaël Leblois [ctb]
Maintainer: François Rousset <francois.rousset@umontpellier.fr>
Diff between blackbox versions 1.1.2 dated 2017-09-05 and 1.1.7 dated 2017-11-03
blackbox-1.1.2/blackbox/src/init.c |only blackbox-1.1.7/blackbox/DESCRIPTION | 12 ++++---- blackbox-1.1.7/blackbox/MD5 | 37 ++++++++++++------------- blackbox-1.1.7/blackbox/NAMESPACE | 8 ++++- blackbox-1.1.7/blackbox/R/RcppExports.R | 14 ++++----- blackbox-1.1.7/blackbox/R/blackbox.R | 10 +++--- blackbox-1.1.7/blackbox/R/blackbox_internals.R | 21 ++++++++------ blackbox-1.1.7/blackbox/R/generateNewPoints.R | 2 - blackbox-1.1.7/blackbox/R/massBarycenter.R | 2 - blackbox-1.1.7/blackbox/R/messageNAMED.R | 10 +++--- blackbox-1.1.7/blackbox/R/overmessage.R | 4 +- blackbox-1.1.7/blackbox/R/profile.R | 4 ++ blackbox-1.1.7/blackbox/R/redundant.addVeq.R | 6 ++-- blackbox-1.1.7/blackbox/R/resetCHull.R | 4 +- blackbox-1.1.7/blackbox/R/sampleByResp.R | 2 - blackbox-1.1.7/blackbox/R/stop.redef.R | 2 - blackbox-1.1.7/blackbox/R/volTriangulation.R | 6 ++-- blackbox-1.1.7/blackbox/R/writeFinalInfo.R | 2 - blackbox-1.1.7/blackbox/inst/NEWS.Rd | 13 ++++++++ blackbox-1.1.7/blackbox/src/RcppExports.cpp | 30 +++++++++++++++----- 20 files changed, 114 insertions(+), 75 deletions(-)
Title: Convert a Matrix of Raw Values into Nice and Tidy Data
Description: Functions to help dealing with raw data from measurements, like
reading and transforming raw values organised in matrices, calculating and
converting concentrations and calculating precision of duplicates /
triplicates / ... . It is compatible with and building on top of
'tidyverse'-packages.
Author: Eike Christian Kühn [aut, cre]
Maintainer: Eike Christian Kühn <eike.kuehn@pixelwoelkchen.de>
Diff between bioset versions 0.1.0 dated 2017-10-08 and 0.2.0 dated 2017-11-03
bioset-0.1.0/bioset/man/fit_linear.Rd |only bioset-0.1.0/bioset/man/fit_lnln.Rd |only bioset-0.1.0/bioset/man/interpolate_linear.Rd |only bioset-0.1.0/bioset/man/interpolate_lnln.Rd |only bioset-0.1.0/bioset/man/plot_linear.Rd |only bioset-0.1.0/bioset/man/plot_lnln.Rd |only bioset-0.2.0/bioset/DESCRIPTION | 11 bioset-0.2.0/bioset/MD5 | 55 - bioset-0.2.0/bioset/NAMESPACE | 1 bioset-0.2.0/bioset/NEWS.md |only bioset-0.2.0/bioset/R/calc.R | 506 +++++++++------- bioset-0.2.0/bioset/R/helper.R | 30 bioset-0.2.0/bioset/R/models.R | 166 ++--- bioset-0.2.0/bioset/R/set.R | 80 +- bioset-0.2.0/bioset/R/sets.R |only bioset-0.2.0/bioset/README.md | 111 +++ bioset-0.2.0/bioset/inst/doc/introduction.R | 77 ++ bioset-0.2.0/bioset/inst/doc/introduction.Rmd | 125 +++- bioset-0.2.0/bioset/inst/doc/introduction.html | 633 ++++++++++++++++++++- bioset-0.2.0/bioset/inst/extdata/plate_2.csv | 8 bioset-0.2.0/bioset/inst/extdata/set_1.csv | 8 bioset-0.2.0/bioset/inst/extdata/set_2.csv | 16 bioset-0.2.0/bioset/man/calc_factor_conc.Rd | 32 - bioset-0.2.0/bioset/man/calc_factor_prefix.Rd | 16 bioset-0.2.0/bioset/man/convert_conc.Rd | 33 - bioset-0.2.0/bioset/man/convert_prefix.Rd | 18 bioset-0.2.0/bioset/man/models_linear.Rd |only bioset-0.2.0/bioset/man/models_lnln.Rd |only bioset-0.2.0/bioset/man/set_calc_concentrations.Rd | 5 bioset-0.2.0/bioset/man/set_calc_variability.Rd | 2 bioset-0.2.0/bioset/man/set_read.Rd | 20 bioset-0.2.0/bioset/man/sets_read.Rd |only bioset-0.2.0/bioset/tests/testthat/test_calc.R | 81 ++ bioset-0.2.0/bioset/vignettes/introduction.Rmd | 125 +++- 34 files changed, 1652 insertions(+), 507 deletions(-)
Title: Function Collection Related to Plotting and Hydrology
Description: Draw horizontal histograms, color scattered points by 3rd dimension,
enhance date- and log-axis plots, zoom in X11 graphics, trace errors and warnings,
use the unit hydrograph in a linear storage cascade, convert lists to data.frames and arrays,
fit multiple functions.
Author: Berry Boessenkool
Maintainer: Berry Boessenkool <berry-b@gmx.de>
Diff between berryFunctions versions 1.15.0 dated 2017-04-10 and 1.16.0 dated 2017-11-03
DESCRIPTION | 14 MD5 | 373 ++++++++++++------------ NAMESPACE | 10 NEWS | 50 ++- R/TFtest.R | 10 R/addAlpha.R | 2 R/addFade.R | 8 R/almost.equal.R | 22 - R/anhang.R | 12 R/approx2.R | 24 - R/around.R | 6 R/berryFunctions-package.R | 30 - R/betaPlot.R | 24 - R/betaPlotComp.R | 22 - R/between.R |only R/checkFile.R | 29 - R/ci.R | 9 R/ciBand.R | 50 +-- R/circle.R | 10 R/classify.R | 169 ++++++---- R/climateGraph.R | 85 ++--- R/colPoints.R | 183 +++++------ R/colPointsHist.R | 6 R/colPointsLegend.R | 84 ++--- R/combineFiles.R | 56 +-- R/compareFiles.R | 2 R/convertUmlaut.R | 6 R/createFun.R | 110 +++---- R/createPres.R | 60 ++- R/dataStr.R | 33 +- R/distance.R | 12 R/divPal.R | 18 - R/dupes.R | 14 R/exTime.R | 14 R/exp4p.R | 10 R/expReg.R | 10 R/funSource.R | 30 + R/funTinn.R | 3 R/funnelPlot.R | 8 R/getColumn.R | 251 ++++++++++++---- R/getName.R | 17 - R/gof.R | 38 +- R/googleLink2pdf.R | 2 R/groupHist.R | 2 R/headtail.R | 12 R/horizHist.R | 28 - R/insertRows.R | 16 - R/instGit.R | 14 R/is.error.R | 12 R/l2array.R | 18 - R/l2df.R | 8 R/legendmt.R | 24 - R/library2.R | 2 R/lim0.R | 9 R/linLogHist.R | 2 R/linLogTrans.R | 8 R/linReg.R | 18 - R/locArrow.R | 14 R/locLine.R | 6 R/logAxis.R | 22 - R/logHist.R | 3 R/logSpaced.R | 8 R/logVals.R | 13 R/lsMem.R | 2 R/lsc.R | 14 R/mReg.R | 76 ++-- R/monthAxis.R | 365 ++++++++++++----------- R/monthLabs.R | 19 - R/movAv.R | 22 - R/na9.R | 4 R/nameSample.R | 2 R/newFilename.R | 92 +++-- R/openFile.R |only R/owa.R | 29 + R/packagePath.R |only R/panelDim.R | 14 R/parallelCode.R |only R/pdfpng.R | 70 ++-- R/popleaf.R | 10 R/pretty2.R | 2 R/quantileBands.R | 10 R/quantileMean.R | 4 R/rainbow2.R | 2 R/round0.R |only R/runAxis.R | 6 R/seasonality.R | 124 ++++--- R/seqPal.R | 29 + R/seqR.R | 2 R/showPal.R | 33 +- R/smallPlot.R | 56 +-- R/smoothLines.R | 6 R/sortDF.R | 10 R/spiralDate.R | 36 +- R/spiralDateAnim.R | 22 - R/superPos.R | 19 - R/tableColVal.R | 210 +++++++------ R/textField.R | 18 - R/timeAxis.R |only R/timer.R | 2 R/toupper1.R | 8 R/traceCall.R | 20 - R/truncMessage.R | 16 - R/tryStack.R | 108 +++--- R/unitHydrograph.R | 2 R/yearSample.R | 4 build/vignette.rds |binary inst/doc/berryFunctions.R | 2 inst/doc/berryFunctions.Rmd | 652 +++++++++++++++++++++--------------------- inst/doc/berryFunctions.html | 94 +++--- inst/extdata/camera.pptx |only inst/extdata/camera1.jpg |binary inst/extdata/camera2.png |binary inst/extdata/solitaire.txt | 3 man/TFtest.Rd | 2 man/addFade.Rd | 2 man/approx2.Rd | 16 - man/berryFunctions-package.Rd | 28 - man/betaPlot.Rd | 6 man/between.Rd |only man/checkFile.Rd | 12 man/ci.Rd | 8 man/ciBand.Rd | 12 man/classify.Rd | 65 ++-- man/climateGraph.Rd | 35 +- man/colPoints.Rd | 132 +++----- man/colPointsHist.Rd | 6 man/colPointsLegend.Rd | 56 +-- man/combineFiles.Rd | 32 +- man/compareFiles.Rd | 2 man/createFun.Rd | 15 man/createPres.Rd | 6 man/dataDWD.Rd | 2 man/dataStr.Rd | 11 man/divPal.Rd | 13 man/dupes.Rd | 10 man/exp4p.Rd | 10 man/expReg.Rd | 10 man/funSource.Rd | 17 - man/funnelPlot.Rd | 8 man/getColumn.Rd | 80 +++-- man/getName.Rd | 9 man/gof.Rd | 14 man/groupHist.Rd | 2 man/headtail.Rd | 2 man/horizHist.Rd | 16 - man/insertRows.Rd | 2 man/instGit.Rd | 2 man/is.error.Rd | 4 man/l2array.Rd | 12 man/l2df.Rd | 4 man/legendmt.Rd | 2 man/library2.Rd | 2 man/lim0.Rd | 6 man/linLogHist.Rd | 2 man/linLogTrans.Rd | 8 man/linReg.Rd | 19 - man/logAxis.Rd | 17 - man/logHist.Rd | 2 man/logSpaced.Rd | 8 man/logVals.Rd | 9 man/lsc.Rd | 14 man/mReg.Rd | 64 ++-- man/monthAxis.Rd | 169 +++++----- man/monthLabs.Rd | 19 - man/movAv.Rd | 16 - man/na9.Rd | 2 man/newFilename.Rd | 21 - man/openFile.Rd |only man/owa.Rd | 13 man/packagePath.Rd |only man/panelDim.Rd | 2 man/parallelCode.Rd |only man/pdfpng.Rd | 38 +- man/popleaf.Rd | 2 man/pretty2.Rd | 2 man/quantileBands.Rd | 8 man/quantileMean.Rd | 2 man/round0.Rd |only man/seasonality.Rd | 76 ++-- man/seqPal.Rd | 20 - man/showPal.Rd | 4 man/smallPlot.Rd | 34 +- man/smoothLines.Rd | 4 man/sortDF.Rd | 8 man/spiralDate.Rd | 14 man/superPos.Rd | 17 - man/tableColVal.Rd | 18 - man/textField.Rd | 14 man/timeAxis.Rd |only man/traceCall.Rd | 6 man/truncMessage.Rd | 7 man/tryStack.Rd | 46 +- man/yearSample.Rd | 2 vignettes/berryFunctions.Rmd | 652 +++++++++++++++++++++--------------------- 194 files changed, 3479 insertions(+), 2937 deletions(-)
More information about berryFunctions at CRAN
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Title: Import from and Export to Amiga Disk Files
Description: Amiga Disk Files (ADF) are virtual
representations of 3.5 inch floppy disks for the
Commodore Amiga. Most disk drives from other systems
(including modern drives) are not able to read these
disks. To be able to emulate this system, the ADF
format was created. This package enables you to read
ADF files and import and export files from and to such
virtual DOS-formatted disks.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between adfExplorer versions 0.1.1 dated 2017-10-30 and 0.1.2 dated 2017-11-03
DESCRIPTION | 8 MD5 | 25 +- NAMESPACE | 1 NEWS | 14 + R/01genericSupport.r | 67 ++++-- R/02amigaDiskBasics.r | 31 ++- R/04fileOperations.r | 425 +++++++++++++++++++++++++++++++++++-------- inst/doc/amigaDiskFiles.R | 8 inst/doc/amigaDiskFiles.Rmd | 6 inst/doc/amigaDiskFiles.html | 70 ------- man/adf.file.exists.Rd |only man/displayRawData.Rd | 3 man/get.adf.file.Rd | 3 vignettes/amigaDiskFiles.Rmd | 6 14 files changed, 474 insertions(+), 193 deletions(-)
Title: Perform Phylogenetic Path Analysis
Description: A comprehensive and easy to use R implementation of confirmatory
phylogenetic path analysis as described by Von Hardenberg and Gonzalez-Voyer
(2012) <doi:10.1111/j.1558-5646.2012.01790.x>.
Author: Wouter van der Bijl [aut, cre]
Maintainer: Wouter van der Bijl <wouter.van.der.bijl@zoologi.su.se>
Diff between phylopath versions 0.3.1 dated 2017-08-09 and 1.0.0 dated 2017-11-03
phylopath-0.3.1/phylopath/man/est_DAG_binary.Rd |only phylopath-0.3.1/phylopath/man/phylo_path_binary.Rd |only phylopath-1.0.0/phylopath/DESCRIPTION | 12 phylopath-1.0.0/phylopath/MD5 | 75 +-- phylopath-1.0.0/phylopath/NAMESPACE | 10 phylopath-1.0.0/phylopath/NEWS.md | 60 ++ phylopath-1.0.0/phylopath/R/DAG.R | 147 +++--- phylopath-1.0.0/phylopath/R/data_docs.R | 36 + phylopath-1.0.0/phylopath/R/internal.R | 192 ++++++-- phylopath-1.0.0/phylopath/R/phylopath.R | 296 +++++-------- phylopath-1.0.0/phylopath/R/print_and_plot.R | 272 ++++++++--- phylopath-1.0.0/phylopath/R/sysdata.rda |binary phylopath-1.0.0/phylopath/build/vignette.rds |binary phylopath-1.0.0/phylopath/data/red_list.rda |only phylopath-1.0.0/phylopath/data/red_list_tree.rda |only phylopath-1.0.0/phylopath/inst/CITATION | 18 phylopath-1.0.0/phylopath/inst/doc/binary_models.R | 53 +- phylopath-1.0.0/phylopath/inst/doc/binary_models.Rmd | 75 +-- phylopath-1.0.0/phylopath/inst/doc/binary_models.html | 121 ++--- phylopath-1.0.0/phylopath/inst/doc/intro_to_phylopath.R | 51 +- phylopath-1.0.0/phylopath/inst/doc/intro_to_phylopath.Rmd | 141 ++++-- phylopath-1.0.0/phylopath/inst/doc/intro_to_phylopath.html | 227 +++++---- phylopath-1.0.0/phylopath/man/DAG.Rd | 20 phylopath-1.0.0/phylopath/man/average.Rd | 18 phylopath-1.0.0/phylopath/man/average_DAGs.Rd | 17 phylopath-1.0.0/phylopath/man/best.Rd | 5 phylopath-1.0.0/phylopath/man/choice.Rd | 7 phylopath-1.0.0/phylopath/man/cichlids.Rd | 4 phylopath-1.0.0/phylopath/man/cichlids_tree.Rd | 6 phylopath-1.0.0/phylopath/man/coef_plot.Rd | 27 - phylopath-1.0.0/phylopath/man/define_model_set.Rd |only phylopath-1.0.0/phylopath/man/est_DAG.Rd | 40 + phylopath-1.0.0/phylopath/man/phylo_path.Rd | 63 ++ phylopath-1.0.0/phylopath/man/plot.DAG.Rd | 32 + phylopath-1.0.0/phylopath/man/plot.fitted_DAG.Rd | 25 - phylopath-1.0.0/phylopath/man/plot_model_set.Rd | 20 phylopath-1.0.0/phylopath/man/red_list.Rd |only phylopath-1.0.0/phylopath/man/red_list_tree.Rd |only phylopath-1.0.0/phylopath/man/rhino.Rd | 8 phylopath-1.0.0/phylopath/man/rhino_tree.Rd | 8 phylopath-1.0.0/phylopath/vignettes/binary_models.Rmd | 75 +-- phylopath-1.0.0/phylopath/vignettes/intro_to_phylopath.Rmd | 141 ++++-- 42 files changed, 1413 insertions(+), 889 deletions(-)
Title: Simultaneous Confidence Intervals for Ranks
Description: Algorithms to construct confidence intervals for the ranks of centers mu_1,...,mu_n based on an independent Gaussian sample using multiple testing techniques.
Author: Diaa Al Mohamad and Erik W. van Zwet and Jelle J. Goeman
Maintainer: Diaa Al Mohamad <diaa.almohamad@gmail.com>
Diff between ICRanks versions 1.0 dated 2017-08-08 and 1.1 dated 2017-11-03
ICRanks-1.0/ICRanks/man/ICRanks-package.Rd |only ICRanks-1.0/ICRanks/src/ICRanks_init.c |only ICRanks-1.1/ICRanks/DESCRIPTION | 10 ++-- ICRanks-1.1/ICRanks/MD5 | 12 ++--- ICRanks-1.1/ICRanks/R/ic.ranks.R | 58 ++++++++++++++------------- ICRanks-1.1/ICRanks/man/ic.ranks.Rd | 8 +-- ICRanks-1.1/ICRanks/src/PartitionByBlock.cpp | 5 +- ICRanks-1.1/ICRanks/src/RcppExports.cpp | 11 +++++ 8 files changed, 59 insertions(+), 45 deletions(-)
Title: Tools for Combinatorics and Computational Mathematics
Description: Provides optimized functions implemented in C++ with 'Rcpp'.
There is a generalized combinations function that is highly efficient
(both speed and memory). There are optional contraint arguments that
when employed, generate all combinations of a vector meeting a specific
criteria (E.g. finding all combinations such that the sum is less than
a bound). Additionally, there are various sieving functions that quickly
generate essential components for problems common in computational
mathematics (E.g. number of comprime elements, divisors, prime
factorizations, and complete factorizations for many numbers as well
as generating primes in a range).
Author: Joseph Wood
Maintainer: Joseph Wood <jwood000@gmail.com>
Diff between RcppAlgos versions 0.1.0 dated 2017-10-26 and 0.1.2 dated 2017-11-03
DESCRIPTION | 6 - MD5 | 22 +++--- README.md | 28 ++++---- man/comboGeneral.Rd | 2 man/divisorsList.Rd | 3 man/eulerPhiSieve.Rd | 3 man/numDivisorSieve.Rd | 3 man/primeFactorizationList.Rd | 3 man/primeSieve.Rd | 15 +++- src/ComboContainer.cpp | 72 +++++++++++---------- src/DivisorSieveContainer.cpp | 22 +++--- src/PrimesContainer.cpp | 139 +++++++++++++++++++++++++----------------- 12 files changed, 186 insertions(+), 132 deletions(-)
Title: PRIM Survival Regression Classification
Description: Performs a unified treatment of Bump Hunting by Patient Rule Induction Method (PRIM) in Survival, Regression and Classification settings (SRC). The current version is a development release that only implements the case of a survival response. New features will be added soon as they are available.
Author: Jean-Eudes Dazard [aut, cre], Michael Choe [ctb], Michael LeBlanc [ctb], Alberto Santana [ctb]
Maintainer: Jean-Eudes Dazard <jean-eudes.dazard@case.edu>
Diff between PRIMsrc versions 0.7.4 dated 2017-09-25 and 0.7.5 dated 2017-11-03
PRIMsrc-0.7.4/PRIMsrc/inst/doc/PRIMsrc_0.7.4.pdf |only PRIMsrc-0.7.5/PRIMsrc/DESCRIPTION | 8 +- PRIMsrc-0.7.5/PRIMsrc/MD5 | 10 +-- PRIMsrc-0.7.5/PRIMsrc/R/PRIMsrc.internal.r | 65 ++++++++++++----------- PRIMsrc-0.7.5/PRIMsrc/README.md | 12 ++-- PRIMsrc-0.7.5/PRIMsrc/inst/NEWS | 27 ++++++--- PRIMsrc-0.7.5/PRIMsrc/inst/doc/PRIMsrc_0.7.5.pdf |only 7 files changed, 69 insertions(+), 53 deletions(-)
Title: Object Pooling
Description: Enables the creation of object pools, which make it less
computationally expensive to fetch a new object. Currently the
only supported pooled objects are 'DBI' connections.
Author: Barbara Borges [aut, cre],
RStudio [cph]
Maintainer: Barbara Borges <barbara@rstudio.com>
Diff between pool versions 0.1.1 dated 2017-09-23 and 0.1.2 dated 2017-11-03
DESCRIPTION | 8 +- MD5 | 41 +++++------ NEWS.md | 32 ++++++-- R/DBI-connection-transaction.R | 13 +-- R/DBI-connection.R | 44 +++++++++++ R/DBI-object.R | 20 +++++ R/DBI-pool.R | 6 - R/DBI.R | 4 - R/dbplyr.R | 129 ++++++++++++++++++++++++++++------- R/pool.R | 14 +-- README.md | 33 ++++---- man/DBI-connection-transaction.Rd | 2 man/DBI-connection.Rd | 45 ++++++++++++ man/DBI-object.Rd | 21 +++++ man/dbPool.Rd | 4 - man/dplyr-db-methods.Rd |only man/pool.Rd | 9 -- man/poolWithTransaction.Rd | 5 - tests/testthat/test-create-destroy.R | 106 +++++++++++++--------------- tests/testthat/test-fetch.R | 8 +- tests/testthat/test-release.R | 24 ++++++ tests/testthat/utils.R | 8 -- 22 files changed, 397 insertions(+), 179 deletions(-)
Title: Penalized Elastic Net S/MM-Estimator of Regression
Description: Robust penalized elastic net S and MM estimator for linear
regression. The method is described in detail in
Cohen Freue, G. V., Kepplinger, D., Salibian-Barrera, M., and Smucler, E.
(2017) <https://gcohenfr.github.io/pdfs/PENSE_manuscript.pdf>.
Author: David Kepplinger [aut, cre],
Derek Cho [aut],
Matias Salibian-Barrera [aut],
Gabriela Cohen Freue [aut]
Maintainer: David Kepplinger <david.kepplinger@gmail.com>
Diff between pense versions 1.0.6 dated 2017-10-25 and 1.0.8 dated 2017-11-03
DESCRIPTION | 8 +-- MD5 | 53 +++++++++++----------- NEWS.md | 6 ++ R/additional-options.R | 20 -------- R/build_lambda_grid.R | 2 R/coef-methods.R | 8 +-- R/enpy.R | 22 +++++++++ R/mscale.R | 19 ++++---- R/pense.R | 7 ++- R/pense_coldwarm.R | 4 + R/pensem.R | 31 ++++++++----- R/predict-methods.R | 6 ++ R/residuals-methods.R | 12 ++++- TODO |only configure | 18 +++---- configure.ac | 2 man/enpy.Rd | 9 +++ man/initest_options.Rd | 10 ---- man/mscale.Rd | 10 ++-- src/ENDal.cpp | 8 +-- src/ElasticNet.cpp | 2 src/IRWEN.cpp | 4 - src/InitialEstimator.cpp | 6 +- src/Options.hpp | 97 ++++++++++++++++++++++++++---------------- src/Rinterface.cpp | 55 +++++++++++++++++++++++ src/Rinterface.hpp | 8 +++ src/autoconfig.win.h | 4 - tests/testthat/test.enpy.rr.R | 4 - 28 files changed, 281 insertions(+), 154 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-06 0.18.1
2014-09-20 0.14.5
2014-03-10 0.14.1
2013-10-29 0.11.3
2013-10-22 0.11.2
2013-07-09 0.9.5
2013-05-13 0.9.1
2013-03-12 0.9
2012-12-17 0.8.12
2012-07-03 0.8.5