Title: Access for Dryad Web Services
Description: Interface to the Dryad "Solr" API, their "OAI-PMH" service, and
fetch datasets. Dryad (<http://datadryad.org/>) is a curated host of
data underlying scientific publications.
Author: Scott Chamberlain [aut, cre],
Carl Boettiger [aut],
Karthik Ram [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between rdryad versions 0.2.0 dated 2015-12-23 and 0.3.0 dated 2017-11-06
DESCRIPTION | 28 +++--- LICENSE | 2 MD5 | 74 +++++++++-------- NAMESPACE | 15 +-- NEWS | 36 +++++++- R/doi2handle.R |only R/download_url.r | 38 +++++---- R/dr_get_records.R | 19 ++-- R/dr_identify.r | 2 R/dr_list_records.R | 2 R/dr_listidentifiers.r | 6 - R/dr_listmetadataformats.r | 2 R/dr_listsets.r | 2 R/dryad_fetch.R | 41 ++++++--- R/dryad_solr.r | 66 ++++++++++++--- R/onload.R |only R/rdryad-package.R | 36 +++++++- R/zzz.R | 16 +++ README.md | 128 ++++++++++++++++--------------- man/d_solr_search.Rd | 32 +++++-- man/doi2handle.Rd |only man/download_dryadmetadata.Rd | 1 man/download_url.Rd | 22 +++-- man/dr_get_records.Rd | 20 ++-- man/dr_identify.Rd | 3 man/dr_list_identifiers.Rd | 9 -- man/dr_list_metadata_formats.Rd | 3 man/dr_list_records.Rd | 3 man/dr_list_sets.Rd | 3 man/dryad_fetch.Rd | 30 ++++--- man/getalldryad_metadata.Rd | 1 man/rdryad-package.Rd | 37 ++++++++ man/search_dryad.Rd | 1 tests/testthat/test-download_url.R | 25 +++--- tests/testthat/test-dr_get_records.R | 25 +++--- tests/testthat/test-dr_list_records.R | 14 +-- tests/testthat/test-dr_listidentifiers.R | 14 +-- tests/testthat/test-dr_listsets.R | 8 - tests/testthat/test-dryad_fetch.R |only tests/testthat/test-solr.R | 6 - 40 files changed, 476 insertions(+), 294 deletions(-)
Title: Tables with Labels and Some Useful Functions from Spreadsheets
and 'SPSS' Statistics
Description: Package provides tabulation functions with support for 'SPSS'-style
labels, multiple / nested banners, weights, multiple-response variables
and significance testing. There are facilities for nice output of tables
in 'knitr', R notebooks, 'Shiny' and 'Jupyter' notebooks. Proper methods
for labelled variables add value labels support to base R functions and to
some functions from other packages. Additionally, the package offers
useful functions for data processing in marketing research / social
surveys - popular data transformation functions from 'SPSS' Statistics
('RECODE', 'COUNT', 'COMPUTE', 'DO IF', etc.) and 'Excel' ('COUNTIF',
'VLOOKUP', etc.). Package is intended to help people to move data
processing from 'Excel'/'SPSS' to R.
Author: Gregory Demin
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between expss versions 0.8.2 dated 2017-09-26 and 0.8.3 dated 2017-11-06
DESCRIPTION | 15 - MD5 | 117 ++++--- NAMESPACE | 45 ++- NEWS | 6 R/aaa_utils.R | 13 R/common_table_utils.R | 22 - R/count_if.R | 7 R/cro.R | 135 +++++++++ R/cro_fun.R | 234 ++++++++++++++- R/drop_empty.R | 30 +- R/expss.R | 59 +++ R/grouping.R | 49 +-- R/html_datatable.R | 6 R/modify.R | 39 ++ R/selectors.R | 2 R/significance_cpct.R | 2 R/vec_ops.R | 22 + R/window_fun.R | 8 inst/doc/TablesWithLabelsInR.R | 16 - inst/doc/TablesWithLabelsInR.Rmd | 16 - inst/doc/TablesWithLabelsInR.html | 357 +++++++++++++++--------- man/by_groups.Rd | 15 - man/count_if.Rd | 6 man/cro.Rd | 43 ++ man/cro_fun.Rd | 78 ++++- man/datatable.Rd | 6 man/drop_empty_rows.Rd | 20 - man/reexports.Rd |only tests/testthat/rds/cro_real3.rds |binary tests/testthat/rds/cro_real3w.rds |binary tests/testthat/rds/cro_real3ww.rds |binary tests/testthat/rds/cro_real4.rds |binary tests/testthat/rds/cro_real4r.rds |binary tests/testthat/rds/cro_real4t.rds |binary tests/testthat/rds/cro_real4w.rds |binary tests/testthat/rds/cro_real5.rds |binary tests/testthat/rds/cro_real5w.rds |binary tests/testthat/rds/cro_real6.rds |binary tests/testthat/rds/cro_real6w.rds |binary tests/testthat/rds/cro_real6wr.rds |binary tests/testthat/rds/cro_real6wt.rds |binary tests/testthat/rds/fre_real3.rds |binary tests/testthat/rds/fre_real3w.rds |binary tests/testthat/rds/fre_real_list.rds |binary tests/testthat/rds/print_etable_2.txt | 69 +++- tests/testthat/rds/print_etable_commented_1.txt | 69 +++- tests/testthat/rds/print_etable_commented_3.txt | 69 +++- tests/testthat/rds/print_etable_digits2_2.txt | 69 +++- tests/testthat/rds/print_etable_unrounded2.txt | 69 +++- tests/testthat/rds/signif_cpct37b.rds |only tests/testthat/test_count_if.R | 1 tests/testthat/test_cro_extended.R | 25 + tests/testthat/test_cro_fun_df_extended.R | 16 + tests/testthat/test_cro_fun_extended.R | 40 ++ tests/testthat/test_drop_empty.R | 13 tests/testthat/test_fre.R | 8 tests/testthat/test_if_val.R | 8 tests/testthat/test_significance_cpct.R | 5 tests/testthat/test_window_fun.R | 16 + tests/testthat/test_with_data.table.R |only vignettes/TablesWithLabelsInR.Rmd | 16 - 61 files changed, 1415 insertions(+), 446 deletions(-)
Title: Econometric Models for Spatial Panel Data
Description: ML and GM estimation and diagnostic testing of econometric models for spatial panel data.
Author: Giovanni Millo [aut, cre],
Gianfranco Piras [aut]
Maintainer: Giovanni Millo <giovanni.millo@generali.com>
Diff between splm versions 1.4-9 dated 2017-09-28 and 1.4-10 dated 2017-11-06
DESCRIPTION | 13 +++++-------- MD5 | 14 +++++++------- R/slmtest.R | 4 ++-- data/Insurance.rda |binary data/RiceFarms.rda |binary data/itaww.rda |binary data/riceww.rda |binary data/usaww.rda |binary 8 files changed, 14 insertions(+), 17 deletions(-)
Title: Installing, Managing, and Switching Between Distinct Sets of
Installed Packages
Description: Provides an abstraction for managing, installing,
and switching between sets of installed R packages. This allows users to
maintain multiple package libraries simultaneously, e.g. to maintain
strict, package-version-specific reproducibility of many analyses, or
work within a development/production release paradigm. Introduces a
generalized package installation process which supports multiple repository
and non-repository sources and tracks package provenance.
Author: Gabriel Becker[aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchr versions 0.11.2 dated 2017-01-12 and 0.12.5 dated 2017-11-06
DESCRIPTION | 8 MD5 | 199 ++++++++++---------- NEWS | 87 ++++----- R/AllClasses.R | 4 R/GitFunctions.R | 14 - R/Install.R | 3 R/Utilities.R | 234 ++++++++++++++++++------ R/allGenerics.R | 1 R/annotateDESCs.R | 9 R/biocversion.R | 135 ++++++++++++-- R/conditionalCode.R | 6 R/crandbtmp.R | 4 R/lazyRepo.R | 2 R/makeLibraryCtx.R | 14 - R/makePkgSourceDir-methods.R | 394 +++++++++++++++++++---------------------- R/methods.R | 29 +-- R/retrievePkgVersion.R | 63 +++++- build/vignette.rds |binary inst/CITATION |only inst/doc/switchrvign.R | 10 - inst/doc/switchrvign.Rnw | 54 ++--- inst/doc/switchrvign.pdf |binary man/BiocDevel.Rd | 3 man/BiocRelease.Rd | 3 man/BiocSVNManifest.Rd | 1 man/BiocVers.Rd | 1 man/GithubManifest.Rd | 1 man/LibraryProfile-class.Rd | 1 man/ManifestRow.Rd | 1 man/PkgManifest.Rd | 5 man/PkgSource-class.Rd | 11 - man/RepoSubset.Rd | 1 man/SessionManifest.Rd | 1 man/SwitchrCtx.Rd | 4 man/SwitchrParam.Rd | 2 man/addPkg.Rd | 9 man/archive_retries.Rd | 5 man/archive_timing.Rd | 5 man/biocReposForVers.Rd | 1 man/branch.Rd | 5 man/checkIsPkgDir.Rd | 1 man/cmethods.Rd | 7 man/cranPkgVersManifest.Rd | 9 man/currentCompEnv.Rd | 1 man/defaultRepos.Rd | 1 man/dep_repos.Rd | 9 man/dl_method.Rd | 5 man/errorOrNonZero.Rd | 1 man/fileFromFileURL.Rd | 1 man/findPkgDir.Rd | 1 man/findPkgVersionInRepo.Rd | 7 man/flushSession.Rd | 1 man/full_libpaths.Rd | 3 man/getPkgDir.Rd | 1 man/gotoVersCommit.Rd | 13 - man/headtail.Rd | 13 - man/install.Rd | 22 +- man/lazyRepo.Rd | 16 - man/libManifest.Rd | 11 - man/library_paths.Rd | 3 man/librarypath.Rd | 1 man/loadGRAN.Rd | 1 man/loadManifest.Rd | 1 man/locatePkgVersion.Rd | 1 man/location-methods.Rd | 1 man/logfun.Rd | 5 man/makeBiocSVNURL.Rd | 1 man/makeFileURL.Rd | 1 man/makeLibraryCtx.Rd | 5 man/makeManifest.Rd | 1 man/makePkgCheckout.Rd | 1 man/makePkgDir.Rd | 27 +- man/makeSeedMan.Rd | 9 man/makeSource.Rd | 4 man/manifest_df.Rd | 13 - man/manifest_methods.Rd | 7 man/normalizePath2.Rd | 1 man/notrack.Rd | 3 man/nrow.Rd | 5 man/packages.Rd | 3 man/parseSessionInfoString.Rd | 1 man/parsedSessionInfo-class.Rd | 1 man/pkgname.Rd | 5 man/publishManifest.Rd | 11 - man/rVersionManifest.Rd | 9 man/removeLib.Rd | 1 man/sh_init.Rd | 5 man/shell_timing.Rd | 5 man/subdir.Rd | 5 man/switchBack.Rd | 1 man/switchDeps.Rd | 1 man/switchTo.Rd | 26 +- man/switchrBaseDir.Rd | 1 man/switchrDontUnload.Rd | 1 man/switchrManifest.Rd | 1 man/switchrNoUnload.Rd | 1 man/system_w_init.Rd | 5 man/updateManifest.Rd | 1 man/versions.Rd | 5 tests/winpath.R | 65 +++--- vignettes/switchrvign.Rnw | 54 ++--- 101 files changed, 994 insertions(+), 758 deletions(-)
Title: A Simple HTTP Server to Serve Static Files or Dynamic Documents
Description: Start an HTTP server in R to serve static files, or dynamic
documents that can be converted to HTML files (e.g., R Markdown) under a
given directory.
Author: Yihui Xie [aut, cre] (0000-0003-0645-5666),
Carson Sievert [ctb],
Jesse Anderson [ctb],
Ramnath Vaidyanathan [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between servr versions 0.7 dated 2017-08-17 and 0.8 dated 2017-11-06
DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NEWS | 6 ++++++ R/make.R | 3 --- R/static.R | 31 ++++++++++++++++++++----------- R/utils.R | 16 ++++++++++------ man/make.Rd | 5 ----- 7 files changed, 49 insertions(+), 38 deletions(-)
Title: Creating Continuously Integrated Package Repositories from
Manifests
Description: Repository based tools for department and analysis level
reproducibility. 'GRANBase' allows creation of custom branched, continuous
integration-ready R repositories, including incremental testing of only packages
which have changed versions since the last repository build.
Author: Gabriel Becker[aut,cre], Cory Barr [cre,ctb], Dinakar Kulkarni [aut,ctb]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between GRANBase versions 1.2.1 dated 2017-02-09 and 1.6.5 dated 2017-11-06
GRANBase-1.2.1/GRANBase/NEWS |only GRANBase-1.2.1/GRANBase/cleanup |only GRANBase-1.2.1/GRANBase/inst/js_css |only GRANBase-1.6.5/GRANBase/DESCRIPTION | 15 GRANBase-1.6.5/GRANBase/MD5 | 186 +- GRANBase-1.6.5/GRANBase/NAMESPACE | 35 GRANBase-1.6.5/GRANBase/NEWS.md |only GRANBase-1.6.5/GRANBase/R/AllClasses.R | 344 ++-- GRANBase-1.6.5/GRANBase/R/GRANonGRAN.R | 83 - GRANBase-1.6.5/GRANBase/R/Install.R | 24 GRANBase-1.6.5/GRANBase/R/Utilities.R | 249 +-- GRANBase-1.6.5/GRANBase/R/accessors.R | 770 +++++----- GRANBase-1.6.5/GRANBase/R/allGenerics.R | 43 GRANBase-1.6.5/GRANBase/R/buildBranchesInRepo.R | 77 - GRANBase-1.6.5/GRANBase/R/clear.R | 68 GRANBase-1.6.5/GRANBase/R/conditionalCode.R | 43 GRANBase-1.6.5/GRANBase/R/contrib.url-methods.R | 56 GRANBase-1.6.5/GRANBase/R/emailNotifier.R |only GRANBase-1.6.5/GRANBase/R/locateRisk.R | 306 ++- GRANBase-1.6.5/GRANBase/R/makeGRANRepos.R | 46 GRANBase-1.6.5/GRANBase/R/makeSrcDirs.R | 10 GRANBase-1.6.5/GRANBase/R/manifestHTML.R | 197 ++ GRANBase-1.6.5/GRANBase/R/migrateToFinalRepo.R | 55 GRANBase-1.6.5/GRANBase/R/pkgHTML.R |only GRANBase-1.6.5/GRANBase/R/pkgSticker.R |only GRANBase-1.6.5/GRANBase/R/results.R | 8 GRANBase-1.6.5/GRANBase/R/saveRepo.R | 61 GRANBase-1.6.5/GRANBase/R/testPackages.R | 183 +- GRANBase-1.6.5/GRANBase/README.md |only GRANBase-1.6.5/GRANBase/build/vignette.rds |binary GRANBase-1.6.5/GRANBase/inst/CITATION |only GRANBase-1.6.5/GRANBase/inst/assets |only GRANBase-1.6.5/GRANBase/inst/doc/GRAN-Overview.pdf |binary GRANBase-1.6.5/GRANBase/man/GRANRepository-accessors.Rd | 3 GRANBase-1.6.5/GRANBase/man/GRANRepository.Rd | 3 GRANBase-1.6.5/GRANBase/man/GRANparams.Rd | 131 - GRANBase-1.6.5/GRANBase/man/RepoFromList.Rd | 1 GRANBase-1.6.5/GRANBase/man/RepoToList.Rd | 1 GRANBase-1.6.5/GRANBase/man/addPkg-GRANRepository-method.Rd | 5 GRANBase-1.6.5/GRANBase/man/availpkgs.Rd | 5 GRANBase-1.6.5/GRANBase/man/buildBadge.Rd |only GRANBase-1.6.5/GRANBase/man/buildBranchesInRepo.Rd | 7 GRANBase-1.6.5/GRANBase/man/buildReportURL.Rd |only GRANBase-1.6.5/GRANBase/man/buildRiskReport.Rd | 28 GRANBase-1.6.5/GRANBase/man/check_result_dir-methods.Rd | 1 GRANBase-1.6.5/GRANBase/man/checkout_dir-methods.Rd | 3 GRANBase-1.6.5/GRANBase/man/clear.Rd | 8 GRANBase-1.6.5/GRANBase/man/contriburl.Rd | 3 GRANBase-1.6.5/GRANBase/man/coverage_report_dir-methods.Rd |only GRANBase-1.6.5/GRANBase/man/createSticker.Rd |only GRANBase-1.6.5/GRANBase/man/createURL.Rd |only GRANBase-1.6.5/GRANBase/man/deltaDF.Rd |only GRANBase-1.6.5/GRANBase/man/dest_base-methods.Rd | 1 GRANBase-1.6.5/GRANBase/man/destination-methods.Rd | 1 GRANBase-1.6.5/GRANBase/man/determinePkgURL.Rd |only GRANBase-1.6.5/GRANBase/man/emailNotifier.Rd |only GRANBase-1.6.5/GRANBase/man/emailTag.Rd |only GRANBase-1.6.5/GRANBase/man/email_notify-methods.Rd |only GRANBase-1.6.5/GRANBase/man/email_options-methods.Rd |only GRANBase-1.6.5/GRANBase/man/encode_string.Rd |only GRANBase-1.6.5/GRANBase/man/errlogfile-methods.Rd | 1 GRANBase-1.6.5/GRANBase/man/extPkgURL.Rd |only GRANBase-1.6.5/GRANBase/man/extPkgURL_old.Rd |only GRANBase-1.6.5/GRANBase/man/generateDescInfo.Rd |only GRANBase-1.6.5/GRANBase/man/getFailureInfo.Rd |only GRANBase-1.6.5/GRANBase/man/getOS.Rd |only GRANBase-1.6.5/GRANBase/man/identifyRisk.Rd | 28 GRANBase-1.6.5/GRANBase/man/install_packages-character-GRANRepository-method.Rd | 1 GRANBase-1.6.5/GRANBase/man/install_result_dir-methods.Rd | 1 GRANBase-1.6.5/GRANBase/man/isValidEmail.Rd |only GRANBase-1.6.5/GRANBase/man/loadRepo.Rd | 1 GRANBase-1.6.5/GRANBase/man/location-methods.Rd | 3 GRANBase-1.6.5/GRANBase/man/makerepo.Rd | 42 GRANBase-1.6.5/GRANBase/man/manifestHTML.Rd | 19 GRANBase-1.6.5/GRANBase/man/notifyManifest.Rd |only GRANBase-1.6.5/GRANBase/man/notrack-methods.Rd | 1 GRANBase-1.6.5/GRANBase/man/param.Rd | 5 GRANBase-1.6.5/GRANBase/man/pkgHTML.Rd |only GRANBase-1.6.5/GRANBase/man/pkg_doc_dir-methods.Rd |only GRANBase-1.6.5/GRANBase/man/readPkgsNEWS.Rd | 1 GRANBase-1.6.5/GRANBase/man/relatedPkgs.Rd |only GRANBase-1.6.5/GRANBase/man/repo_url-methods.Rd | 3 GRANBase-1.6.5/GRANBase/man/repobase-methods.Rd | 1 GRANBase-1.6.5/GRANBase/man/repobuildparam.Rd | 17 GRANBase-1.6.5/GRANBase/man/reporesults.Rd | 5 GRANBase-1.6.5/GRANBase/man/reversals.Rd |only GRANBase-1.6.5/GRANBase/man/saveRepo.Rd | 1 GRANBase-1.6.5/GRANBase/man/sendMail.Rd |only GRANBase-1.6.5/GRANBase/man/sortDelimitedString.Rd |only GRANBase-1.6.5/GRANBase/man/staging-methods.Rd | 1 GRANBase-1.6.5/GRANBase/man/string2list.Rd |only GRANBase-1.6.5/GRANBase/man/templib.Rd | 3 GRANBase-1.6.5/GRANBase/man/testCoverage.Rd |only GRANBase-1.6.5/GRANBase/man/writeGRANLog.Rd | 3 94 files changed, 1777 insertions(+), 1420 deletions(-)
Title: Working with Google's 'Public Data Explorer' DSPL Metadata Files
Description: Provides a collection of functions to set up 'Google Public Data Explorer'
<https://www.google.com/publicdata/> data visualization tool with your own data,
building automatically the corresponding DataSet Publishing Language file, or
DSPL (XML), metadata file jointly with the CSV files. All zip-up and ready to
be published in 'Public Data Explorer'.
Author: George Vega Yon [aut, cre]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between googlePublicData versions 0.15.7.28 dated 2015-07-29 and 0.16.1 dated 2017-11-06
googlePublicData-0.15.7.28/googlePublicData/R/bugtrackers.R |only googlePublicData-0.15.7.28/googlePublicData/R/dspl.R |only googlePublicData-0.15.7.28/googlePublicData/R/jodatimes.R |only googlePublicData-0.15.7.28/googlePublicData/R/pdemethods.R |only googlePublicData-0.15.7.28/googlePublicData/inst/NEWS.Rd |only googlePublicData-0.15.7.28/googlePublicData/man/dsplMethods.Rd |only googlePublicData-0.16.1/googlePublicData/DESCRIPTION | 20 googlePublicData-0.16.1/googlePublicData/MD5 | 50 +- googlePublicData-0.16.1/googlePublicData/NAMESPACE | 28 - googlePublicData-0.16.1/googlePublicData/NEWS.md |only googlePublicData-0.16.1/googlePublicData/R/bugtrackers.r |only googlePublicData-0.16.1/googlePublicData/R/dspl.r |only googlePublicData-0.16.1/googlePublicData/R/googlepublicdata.r |only googlePublicData-0.16.1/googlePublicData/R/jodatimes.r |only googlePublicData-0.16.1/googlePublicData/R/pdemethods.r |only googlePublicData-0.16.1/googlePublicData/demo/dspl.R | 5 googlePublicData-0.16.1/googlePublicData/inst/CITATION | 22 - googlePublicData-0.16.1/googlePublicData/inst/NEWS |only googlePublicData-0.16.1/googlePublicData/inst/dspl-tutorial |only googlePublicData-0.16.1/googlePublicData/man/checkTimeFormat.Rd | 59 +- googlePublicData-0.16.1/googlePublicData/man/countries.Rd | 17 googlePublicData-0.16.1/googlePublicData/man/country_slice.Rd | 18 googlePublicData-0.16.1/googlePublicData/man/dspl-methods.Rd |only googlePublicData-0.16.1/googlePublicData/man/dspl.Rd | 206 ++++++---- googlePublicData-0.16.1/googlePublicData/man/genMoreInfo.Rd | 90 ++-- googlePublicData-0.16.1/googlePublicData/man/gender_country_slice.Rd | 18 googlePublicData-0.16.1/googlePublicData/man/genders.Rd | 18 googlePublicData-0.16.1/googlePublicData/man/googlePublicData.Rd | 68 +-- googlePublicData-0.16.1/googlePublicData/man/state_slice.Rd | 19 googlePublicData-0.16.1/googlePublicData/man/states.Rd | 19 googlePublicData-0.16.1/googlePublicData/tests |only 31 files changed, 393 insertions(+), 264 deletions(-)
More information about googlePublicData at CRAN
Permanent link
Title: Select from a Set of Strings
Description: A backend for the selecting functions of the 'tidyverse'.
It makes it easy to implement select-like functions in your own
packages in a way that is consistent with other 'tidyverse'
interfaces for selection.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between tidyselect versions 0.2.2 dated 2017-10-10 and 0.2.3 dated 2017-11-06
DESCRIPTION | 6 +++--- MD5 | 26 +++++++++++++------------- NEWS.md | 10 ++++++++++ R/select-helpers.R | 4 ++-- R/tidyselect.R | 11 +++++------ R/utils.R | 26 ++++++++++++++++++++++++++ R/vars-rename.R | 3 +++ R/vars-select.R | 15 ++++++++++++--- R/vars.R | 21 ++++++++++++++++++++- man/select_helpers.Rd | 4 ++-- tests/testthat/test-vars-pull.R | 5 +++++ tests/testthat/test-vars-rename.R | 6 ++++++ tests/testthat/test-vars-select.R | 10 ++++++++-- tests/testthat/test-vars.R | 8 ++++++++ 14 files changed, 123 insertions(+), 32 deletions(-)
Title: Publish Package Manifests to GitHub Gists
Description: Provides a simple plugin to the switchr
framework which allows users to publish package and
session manifests as gists.
Author: Gabriel Becker [aut, cre]
Maintainer: Gabriel Becker <becker.gabriel@gene.com>
Diff between switchrGist versions 0.2.1 dated 2015-06-09 and 0.2.2 dated 2017-11-06
DESCRIPTION | 12 +++++++----- MD5 | 13 +++++++------ NAMESPACE | 2 +- R/publishManifest.R | 1 + inst |only man/Gist.Rd | 3 +-- man/GistDest-class.Rd | 3 +-- man/publishManifest.Rd | 10 ++++++---- 8 files changed, 24 insertions(+), 20 deletions(-)
Title: High Dimensional Geometry and Set Operations Using Kernel
Density Estimation, Support Vector Machines, and Convex Hulls
Description: Estimates the shape and volume of high-dimensional datasets and performs set operations: intersection / overlap, union, unique components, inclusion test, and hole detection. Uses stochastic geometry approach to high-dimensional kernel density estimation, support vector machine delineation, and convex hull generation. Applications include modeling trait and niche hypervolumes and species distribution modeling.
Author: Benjamin Blonder, with contributions from David J. Harris
Maintainer: Benjamin Blonder <bblonder@gmail.com>
Diff between hypervolume versions 2.0.7 dated 2017-08-07 and 2.0.8 dated 2017-11-06
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/RcppExports.R | 4 ++-- R/hypervolume_inclusion_test.R | 2 +- R/hypervolume_plot.R | 1 + R/kdtree_build.R | 2 +- src/KDTree.h | 2 +- src/RcppExports.cpp | 9 ++++----- src/convert.cpp | 32 ++++++++++++++++---------------- 9 files changed, 38 insertions(+), 38 deletions(-)
Title: Import, Manipulate and Explore the Results of an Antares
Simulation
Description: Import, manipulate and explore results generated by Antares, a
powerful software developed by RTE to simulate and study electric power systems
(more information about Antares here: <https://antares.rte-france.com>).
Author: Jalal-Edine ZAWAM [aut, cre],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
RTE [cph]
Maintainer: Jalal-Edine ZAWAM <jalal-edine.zawam@rte-france.com>
Diff between antaresRead versions 1.1.4 dated 2017-07-11 and 2.0.0 dated 2017-11-06
antaresRead-1.1.4/antaresRead/R/removeVirtualNodes.R |only antaresRead-1.1.4/antaresRead/tests/testthat/test-removeVirtualNodes.R |only antaresRead-2.0.0/antaresRead/DESCRIPTION | 29 antaresRead-2.0.0/antaresRead/MD5 | 129 - antaresRead-2.0.0/antaresRead/NAMESPACE | 13 antaresRead-2.0.0/antaresRead/NEWS | 15 antaresRead-2.0.0/antaresRead/R/addClassAndAttributes.R | 1 antaresRead-2.0.0/antaresRead/R/asAntaresDataList.R | 140 - antaresRead-2.0.0/antaresRead/R/asAntaresDataTable.R | 102 - antaresRead-2.0.0/antaresRead/R/copyToClipboard.R | 172 - antaresRead-2.0.0/antaresRead/R/extractDataList.R | 208 +- antaresRead-2.0.0/antaresRead/R/giveSize.R |only antaresRead-2.0.0/antaresRead/R/h5_antaresReadH5.R |only antaresRead-2.0.0/antaresRead/R/h5_readInputs.R |only antaresRead-2.0.0/antaresRead/R/h5_setSimulationPathH5.R |only antaresRead-2.0.0/antaresRead/R/h5_timeManagement.R |only antaresRead-2.0.0/antaresRead/R/h5_transformData.R |only antaresRead-2.0.0/antaresRead/R/h5_writeData.R |only antaresRead-2.0.0/antaresRead/R/h5_writeH5ByYear.R |only antaresRead-2.0.0/antaresRead/R/h5utils.R |only antaresRead-2.0.0/antaresRead/R/importInput.R | 110 - 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Title: Utility Functions for Exploratory Factor Analysis
Description: A number of utility function for exploratory factor analysis
are included in this package. In particular, it computes standard errors for
parameter estimates and factor correlations under a variety of conditions.
Author: Guangjian Zhang, Ge Jiang, Minami Hattori, Lauren Trichtinger
Maintainer: Guangjian Zhang <gzhang3@nd.edu>
Diff between EFAutilities versions 1.1.0 dated 2017-09-29 and 1.1.1 dated 2017-11-06
EFAutilities-1.1.0/EFAutilities/R/Alignment20160930.R |only EFAutilities-1.1.1/EFAutilities/DESCRIPTION | 10 +++++----- EFAutilities-1.1.1/EFAutilities/MD5 | 6 +++--- EFAutilities-1.1.1/EFAutilities/NEWS.md | 2 +- EFAutilities-1.1.1/EFAutilities/R/Alignment20171102_c.R |only 5 files changed, 9 insertions(+), 9 deletions(-)
Title: Data Science Labs
Description: Datasets and functions that facilitate data analysis labs in data science courses and workshops.
Author: Rafael A. Irizarry
Maintainer: Rafael A. Irizarry <rafa@jimmy.harvard.edu>
Diff between dslabs versions 0.2.0 dated 2017-09-23 and 0.3.3 dated 2017-11-06
DESCRIPTION | 8 +- MD5 | 17 ++--- R/research_funding_rates.R | 5 + data/heights.rda |binary data/raw_data_research_funding_rates.rda |only data/reported_heights.rda |binary data/research_funding_rates.rda |binary inst/script/make-reported_heights-rda.R | 94 +++++++++++++++++------------- inst/script/make-research_funding_rates.R | 63 ++++++++++++-------- man/research_funding_rates.Rd | 4 + 10 files changed, 116 insertions(+), 75 deletions(-)
Title: Fit a Penalized Continuation Ratio Model for Predicting an
Ordinal Response
Description: Provides a function for fitting a penalized constrained continuation ratio model using the glmpath algorithm and methods for extracting coefficient estimates, predicted class, class probabilities, and plots.
Author: Kellie J. Archer
Maintainer: Kellie J. Archer <archer.43@osu.edu>
Diff between glmpathcr versions 1.0.4 dated 2017-09-07 and 1.0.5 dated 2017-11-06
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/glmpathcr.R | 6 +++++- build/vignette.rds |binary data/diabetes.rda |binary inst/doc/glmpathcr.pdf |binary 6 files changed, 15 insertions(+), 11 deletions(-)
Title: 'fastText' Wrapper for Text Classification and Word
Representation
Description: Learning text representations and text classifiers may rely
on the same simple and efficient approach. 'fastText' is an open-source, free,
lightweight library that allows users to perform both tasks.
It transforms text into continuous vectors that can later
be used on many language related task.
It works on standard, generic hardware (no 'GPU' required).
It also includes model size reduction feature.
'fastText' original source code is available
at <https://github.com/facebookresearch/fastText>.
Author: Michaël Benesty [aut, cre, cph],
Facebook, Inc [cph]
Maintainer: Michaël Benesty <michael@benesty.fr>
Diff between fastrtext versions 0.2.1 dated 2017-09-18 and 0.2.2 dated 2017-11-06
fastrtext-0.2.1/fastrtext/DESCRIPTION |only fastrtext-0.2.1/fastrtext/LICENSE |only fastrtext-0.2.1/fastrtext/MD5 |only fastrtext-0.2.1/fastrtext/NAMESPACE |only fastrtext-0.2.1/fastrtext/NEWS.md |only fastrtext-0.2.1/fastrtext/R |only fastrtext-0.2.1/fastrtext/build |only fastrtext-0.2.1/fastrtext/cleanup |only fastrtext-0.2.1/fastrtext/data |only fastrtext-0.2.1/fastrtext/demo |only fastrtext-0.2.1/fastrtext/inst/doc |only fastrtext-0.2.1/fastrtext/inst/extdata/model_classification_test.bin |only fastrtext-0.2.1/fastrtext/man |only fastrtext-0.2.1/fastrtext/src |only fastrtext-0.2.1/fastrtext/tests |only fastrtext-0.2.1/fastrtext/tools |only fastrtext-0.2.1/fastrtext/vignettes |only fastrtext-0.2.2/fastrtext/inst/extdata/model_unsupervised_test.bin |binary 18 files changed
Title: Extended Structural Equation Modelling
Description: Facilitates treatment of statistical model specifications
as things that can be generated and manipulated programmatically.
Structural equation models may be specified with reticular action model matrices or paths,
linear structural relations matrices or paths, or
directly in matrix algebra.
Fit functions include full information maximum likelihood,
maximum likelihood, and weighted least squares.
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
equations, state space, and many others. See Neale, Hunter, Pritikin, Zahery, Brick,
Kirkpatrick, Estabrook, Bates, Maes, & Boker (2016) <doi:10.1007/s11336-014-9435-8>.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
Michael D. Hunter [aut],
Daniel C. Hackett [ctb],
Julian Karch [ctb],
Andreas M. Brandmaier [ctb],
Joshua N. Pritikin [aut, cre],
Mahsa Zahery [aut],
Robert M. Kirkpatrick [aut],
Yang Wang [ctb],
Charles Driver [ctb],
Massachusetts Institute of Technology [cph],
S. G. Johnson [cph],
Association for Computing Machinery [cph],
Dieter Kraft [cph],
Stefan Wilhelm [cph],
Manjunath B G [cph]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.7.18 dated 2017-10-15 and 2.8.3 dated 2017-11-06
OpenMx-2.7.18/OpenMx/src/autodep |only OpenMx-2.8.3/OpenMx/CHANGES | 10 OpenMx-2.8.3/OpenMx/DESCRIPTION | 14 - OpenMx-2.8.3/OpenMx/MD5 | 132 +++++----- OpenMx-2.8.3/OpenMx/R/MxCompare.R | 2 OpenMx-2.8.3/OpenMx/R/MxEval.R | 10 OpenMx-2.8.3/OpenMx/R/MxExpectation.R | 4 OpenMx-2.8.3/OpenMx/R/MxExpectationNormal.R | 32 +- OpenMx-2.8.3/OpenMx/R/MxFactorScores.R | 8 OpenMx-2.8.3/OpenMx/R/MxFitFunction.R | 7 OpenMx-2.8.3/OpenMx/R/MxFitFunctionAlgebra.R | 5 OpenMx-2.8.3/OpenMx/R/MxFitFunctionGREML.R | 4 OpenMx-2.8.3/OpenMx/R/MxFitFunctionML.R | 9 OpenMx-2.8.3/OpenMx/R/MxFitFunctionMultigroup.R | 4 OpenMx-2.8.3/OpenMx/R/MxInterval.R | 21 - OpenMx-2.8.3/OpenMx/R/MxModel.R | 15 - OpenMx-2.8.3/OpenMx/R/MxOptions.R | 8 OpenMx-2.8.3/OpenMx/R/MxRun.R | 9 OpenMx-2.8.3/OpenMx/R/MxSaturatedModel.R | 70 ++++- OpenMx-2.8.3/OpenMx/R/MxSummary.R | 5 OpenMx-2.8.3/OpenMx/R/MxVersion.R | 2 OpenMx-2.8.3/OpenMx/R/omxBrownie.R | 15 - OpenMx-2.8.3/OpenMx/R/omxGetNPSOL.R | 10 OpenMx-2.8.3/OpenMx/R/zzz.R | 7 OpenMx-2.8.3/OpenMx/configure | 2 OpenMx-2.8.3/OpenMx/inst/CITATION | 6 OpenMx-2.8.3/OpenMx/inst/models/nightly/DefinitionIloo.R | 2 OpenMx-2.8.3/OpenMx/inst/models/nightly/MIMIC.R | 2 OpenMx-2.8.3/OpenMx/inst/models/nightly/MultigroupWLS.R |only OpenMx-2.8.3/OpenMx/inst/models/nightly/OneFactorOrdinal01_MatrixRaw.R | 4 OpenMx-2.8.3/OpenMx/inst/models/nightly/OneFactorOrdinal_MatrixRaw.R | 2 OpenMx-2.8.3/OpenMx/inst/models/nightly/SkippedRows.R | 5 OpenMx-2.8.3/OpenMx/inst/models/nightly/brooke.R | 2 OpenMx-2.8.3/OpenMx/inst/models/nightly/thresholdModel1Factor3Variate.R | 14 - OpenMx-2.8.3/OpenMx/inst/models/nightly/thresholdModel1Factor5Variate.R | 15 - OpenMx-2.8.3/OpenMx/inst/models/nightly/thresholdModel1Factor5VariateWLS.R | 8 OpenMx-2.8.3/OpenMx/inst/models/passing/AlgebraComputePassing.R | 5 OpenMx-2.8.3/OpenMx/inst/models/passing/GREML_Error_Detection.R | 2 OpenMx-2.8.3/OpenMx/inst/models/passing/Multilevel-GenData.R |only OpenMx-2.8.3/OpenMx/inst/models/passing/MultipleRegression_MatrixRawReverse.R | 2 OpenMx-2.8.3/OpenMx/inst/models/passing/NelderMead--bothConstraintTypes.R | 12 OpenMx-2.8.3/OpenMx/inst/models/passing/RenameAndSummary.R | 2 OpenMx-2.8.3/OpenMx/inst/models/passing/SimpleMix.R | 3 OpenMx-2.8.3/OpenMx/inst/models/passing/UselessConstraint.R | 2 OpenMx-2.8.3/OpenMx/inst/models/passing/ZeroWeightSkip.R |only OpenMx-2.8.3/OpenMx/inst/models/passing/ifa-drm-mg2.R | 2 OpenMx-2.8.3/OpenMx/inst/models/passing/ifa-lmp.R | 4 OpenMx-2.8.3/OpenMx/inst/models/passing/jointFactorModelsTest.R | 14 - OpenMx-2.8.3/OpenMx/inst/models/passing/vectorEqualsT.R | 2 OpenMx-2.8.3/OpenMx/man/OpenMx.Rd | 4 OpenMx-2.8.3/OpenMx/man/mxBootstrap.Rd | 2 OpenMx-2.8.3/OpenMx/man/mxExpectationHiddenMarkov.Rd | 16 + OpenMx-2.8.3/OpenMx/man/mxExpectationMixture.Rd | 16 + OpenMx-2.8.3/OpenMx/man/mxOption.Rd | 12 OpenMx-2.8.3/OpenMx/man/mxRun.Rd | 2 OpenMx-2.8.3/OpenMx/man/omxBrownie.Rd | 45 +++ OpenMx-2.8.3/OpenMx/man/omxParallelCI.Rd | 6 OpenMx-2.8.3/OpenMx/man/omxSaturatedModel.Rd | 16 - OpenMx-2.8.3/OpenMx/src/AlgebraFunctions.h | 40 --- OpenMx-2.8.3/OpenMx/src/Compute.h | 5 OpenMx-2.8.3/OpenMx/src/ComputeGD.cpp | 2 OpenMx-2.8.3/OpenMx/src/MarkovFF.cpp | 10 OpenMx-2.8.3/OpenMx/src/fitMultigroup.cpp | 2 OpenMx-2.8.3/OpenMx/src/glue.cpp | 10 OpenMx-2.8.3/OpenMx/src/omxFIMLFitFunction.cpp | 82 +++--- OpenMx-2.8.3/OpenMx/src/omxFIMLFitFunction.h | 49 ++- OpenMx-2.8.3/OpenMx/src/omxMatrix.h | 24 - OpenMx-2.8.3/OpenMx/src/omxRAMExpectation.cpp | 4 OpenMx-2.8.3/OpenMx/src/omxState.h | 11 69 files changed, 538 insertions(+), 335 deletions(-)
Title: Nowcast Analysis and Create Real-Time Data Basis
Description: Methods and tools to estimate 'forecasts' of Brazilian macroeconomic variables in the near future or the recent past, i.e. 'nowcast'. It allows: extract information in real time, creating a real time data base; estimate relationship between macroeconomic variables via dynamic factors; forecast time series in previous periods of reference; forecast time series in the current period of reference (nowcasting); recreate a data base simulating the information available in the past for evaluating forecasting models accuracy (pseudo real-time data base); access information available in a specific date in the past (real-time data base), for some variables.
Author: Guilherme Branco Gomes [aut, cre],
Daiane Mattos [aut],
Pedro Costa Ferreira [aut]
Maintainer: Guilherme Branco Gomes <guilherme.branco@fgv.br>
Diff between nowcasting versions 0.1 dated 2017-11-02 and 0.1.1 dated 2017-11-06
DESCRIPTION | 10 MD5 | 68 - NAMESPACE | 72 - R/BRGDP.R | 24 R/Bpanel.R | 256 ++--- R/News_DFM_ML.R | 740 +++++++------- R/PRTDB.R | 58 - R/RTDB.R | 398 ++++---- R/USGDP.R | 30 R/ajustePIB.R | 14 R/base_extraction.R | 158 +-- R/get.series.bacen.R | 230 ++-- R/method_2s.R | 1278 ++++++++++++------------- R/method_EM.r | 1876 +++++++++++++++++++------------------- R/month2qtr.R | 42 R/nowcast.R | 310 +++--- R/nowcast.plot.R | 236 ++-- R/nowcasting.R | 54 - R/qtr2month.r | 40 build/vignette.rds |binary inst/doc/nowcasting-vignette.R | 228 ++-- inst/doc/nowcasting-vignette.Rmd | 620 ++++++------ inst/doc/nowcasting-vignette.html | 1494 +++++++++++++++--------------- man/BRGDP.Rd | 36 man/Bpanel.Rd | 102 +- man/PRTDB.Rd | 50 - man/RTDB.Rd | 50 - man/USGDP.Rd | 50 - man/base_extraction.Rd | 84 - man/month2qtr.Rd | 44 man/nowcast.Rd | 144 +- man/nowcast.plot.Rd | 76 - man/nowcasting.Rd | 66 - man/qtr2month.Rd | 48 vignettes/nowcasting-vignette.Rmd | 620 ++++++------ 35 files changed, 4803 insertions(+), 4803 deletions(-)
Title: Tests of Fit for some Probability Distributions
Description: Goodness-of-fit tests for gamma, inverse Gaussian, log-normal, 'Weibull', 'Frechet', Gumbel, normal, multivariate normal, Cauchy, Laplace or double exponential, exponential and generalized Pareto distributions. Parameter estimators for gamma, inverse Gaussian and generalized Pareto distributions.
Author: Elizabeth Gonzalez-Estrada, Jose A. Villasenor-Alva
Maintainer: Elizabeth Gonzalez-Estrada <egonzalez@colpos.mx>
Diff between goft versions 1.3.1 dated 2016-05-24 and 1.3.4 dated 2017-11-06
DESCRIPTION | 12 ++++++------ MD5 | 48 ++++++++++++++++++++++++------------------------ R/cauchy.test.R | 2 +- R/de.test.R | 2 +- R/ev.test.R | 2 +- R/gp.fit.R | 2 +- R/gp.test.R | 2 +- R/ig.fit.R | 2 +- R/ig.test.R | 2 +- R/lnorm.test.R | 2 +- R/mvShapiro.Test.R | 2 +- R/normal.R | 2 +- R/weibull.test.R | 4 ++-- inst/history.txt | 11 ++++++++--- man/cauchy.test.Rd | 8 ++++---- man/de.test.Rd | 12 ++++++------ man/ev.test.Rd | 8 ++++---- man/gp.fit.Rd | 14 +++++++------- man/gp.test.Rd | 10 +++++----- man/ig.fit.Rd | 10 +++++----- man/ig.test.Rd | 12 ++++++------ man/lnorm.test.Rd | 10 +++++----- man/mvShapiro.Test.Rd | 14 +++++++------- man/normal.Rd | 8 ++++---- man/weibull.test.Rd | 12 ++++++------ 25 files changed, 109 insertions(+), 104 deletions(-)
Title: Methods to Enrich R Objects with Extra Components
Description: Provides the "enrich" method to enrich list-like R objects with new, relevant components. The current version has methods for enriching objects of class 'family', 'link-glm', 'lm', 'glm' and 'betareg'. The resulting objects preserve their class, so all methods associated with them still apply. The package also provides the 'enriched_glm' function that has the same interface as 'glm' but results in objects of class 'enriched_glm'. In addition to the usual components in a `glm` object, 'enriched_glm' objects carry an object-specific simulate method and functions to compute the scores, the observed and expected information matrix, the first-order bias, as well as model densities, probabilities, and quantiles at arbitrary parameter values. The package can also be used to produce customizable source code templates for the structured implementation of methods to compute new components and enrich arbitrary objects.
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <i.kosmidis@ucl.ac.uk>
Diff between enrichwith versions 0.0.5 dated 2017-10-07 and 0.1 dated 2017-11-06
enrichwith-0.0.5/enrichwith/vignettes/GLMs[exported].html |only enrichwith-0.1/enrichwith/DESCRIPTION | 6 enrichwith-0.1/enrichwith/MD5 | 34 - enrichwith-0.1/enrichwith/NEWS.md | 12 enrichwith-0.1/enrichwith/R/enrich-package.R | 7 enrichwith-0.1/enrichwith/R/enrich.family.R | 355 ++++++++++--- enrichwith-0.1/enrichwith/R/enrich.glm.R | 2 enrichwith-0.1/enrichwith/R/enrich.link-glm.R | 2 enrichwith-0.1/enrichwith/README.md | 11 enrichwith-0.1/enrichwith/build/vignette.rds |binary enrichwith-0.1/enrichwith/inst/dev_resids.R |only enrichwith-0.1/enrichwith/inst/doc/GLMs.html | 4 enrichwith-0.1/enrichwith/inst/doc/exponential_family.R |only enrichwith-0.1/enrichwith/inst/doc/exponential_family.Rmd |only enrichwith-0.1/enrichwith/inst/doc/exponential_family.html |only enrichwith-0.1/enrichwith/man/enrich.Rd | 3 enrichwith-0.1/enrichwith/man/enrich.family.Rd | 78 +- enrichwith-0.1/enrichwith/man/enrich.link-glm.Rd | 2 enrichwith-0.1/enrichwith/man/enrichwith.Rd | 3 enrichwith-0.1/enrichwith/man/get_enrichment_options.Rd | 3 enrichwith-0.1/enrichwith/vignettes/exponential_family.Rmd |only 21 files changed, 374 insertions(+), 148 deletions(-)
Title: Miscellaneous Functions for Panel Data, Quantiles, and Printing
Results
Description: These are miscellaneous functions for working with panel data, quantiles, and printing results. For panel data, the package includes functions for making a panel data balanced (that is, dropping missing individuals that have missing observations in any time period), converting id numbers to row numbers, and to treat repeated cross sections as panel data under the assumption of rank invariance. For quantiles, there are functions to make distribution functions from a set of data points (this is particularly useful when a distribution function is created in several steps) and to combine distribution functions based on some external weights; these distribution functions can easily be inverted to obtain quantiles. Finally, there are several other miscellaneous functions for obtaining weighted means, weighted distribution functions, and weighted quantiles; to generate summary statistics and their differences for two groups; and to add or drop covariates from formulas.
Author: Brantly Callaway [aut, cre]
Maintainer: Brantly Callaway <brantly.callaway@temple.edu>
Diff between BMisc versions 1.0.0 dated 2017-06-14 and 1.1.1 dated 2017-11-06
DESCRIPTION | 12 ++++---- MD5 | 15 ++++++---- NAMESPACE | 1 NEWS.md |only R/BMisc.R | 66 ++++++++++++++++++++++++++++++++++++++++++--- README.md | 1 man/addCovToFormla.Rd |only man/compareSingleBinary.Rd |only man/dropCovFromFormla.Rd | 2 - man/makeDist.Rd | 5 ++- 10 files changed, 84 insertions(+), 18 deletions(-)
Title: Bayesian Structure Learning in Graphical Models using
Birth-Death MCMC
Description: Provides statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889> and Mohammadi et al. (2017) <doi:10.1111/rssc.12171>. To speed up the computations, the BDMCMC sampling algorithms are implemented in parallel using OpenMP in C++.
Author: Abdolreza Mohammadi and Ernst Wit
Maintainer: Abdolreza Mohammadi <a.mohammadi@rug.nl>
Diff between BDgraph versions 2.41 dated 2017-10-16 and 2.42 dated 2017-11-06
BDgraph-2.41/BDgraph/R/bdgraph.ts.R |only BDgraph-2.41/BDgraph/R/rcwish.R |only BDgraph-2.41/BDgraph/R/rgcwish.R |only BDgraph-2.41/BDgraph/R/test.R |only BDgraph-2.41/BDgraph/man/bdgraph.ts.Rd |only BDgraph-2.41/BDgraph/man/rcwish.Rd |only BDgraph-2.41/BDgraph/man/rgcwish.Rd |only BDgraph-2.41/BDgraph/src/BDgraph-win.def |only BDgraph-2.41/BDgraph/src/Makevars |only BDgraph-2.41/BDgraph/src/MyLapack.cpp |only BDgraph-2.41/BDgraph/src/MyLapack.h |only BDgraph-2.41/BDgraph/src/bd_for_ts.cpp |only BDgraph-2.41/BDgraph/src/test_c.cpp |only BDgraph-2.42/BDgraph/DESCRIPTION | 8 - BDgraph-2.42/BDgraph/MD5 | 67 ++++------ BDgraph-2.42/BDgraph/NAMESPACE | 6 BDgraph-2.42/BDgraph/NEWS | 9 + BDgraph-2.42/BDgraph/R/bdgraph.R | 4 BDgraph-2.42/BDgraph/R/bdgraph.mpl.R | 5 BDgraph-2.42/BDgraph/R/bdgraph.sim.R | 122 ++++++++++++++++-- BDgraph-2.42/BDgraph/R/check.os.R | 23 +-- BDgraph-2.42/BDgraph/R/plinks.R | 46 ++++-- BDgraph-2.42/BDgraph/R/select.R | 21 ++- BDgraph-2.42/BDgraph/cleanup |only BDgraph-2.42/BDgraph/configure |only BDgraph-2.42/BDgraph/configure.ac |only BDgraph-2.42/BDgraph/man/BDgraph-internal.Rd | 5 BDgraph-2.42/BDgraph/man/BDgraph-package.Rd | 2 BDgraph-2.42/BDgraph/man/bdgraph.mpl.Rd | 6 BDgraph-2.42/BDgraph/man/bdgraph.sim.Rd | 1 BDgraph-2.42/BDgraph/man/plinks.Rd | 3 BDgraph-2.42/BDgraph/src/Makevars.in |only BDgraph-2.42/BDgraph/src/Makevars.win | 4 BDgraph-2.42/BDgraph/src/check_nthread.cpp | 12 - BDgraph-2.42/BDgraph/src/check_os.cpp | 19 +- BDgraph-2.42/BDgraph/src/copula.cpp | 3 BDgraph-2.42/BDgraph/src/ggm_mpl_bd.cpp | 166 +++++++++++++++++-------- BDgraph-2.42/BDgraph/src/gm_mpl_bd_dis.cpp | 2 BDgraph-2.42/BDgraph/src/init.c | 12 - BDgraph-2.42/BDgraph/src/matrix.cpp | 24 +-- BDgraph-2.42/BDgraph/src/omp_set_num_cores.cpp | 12 - BDgraph-2.42/BDgraph/src/rgwish.cpp | 14 +- BDgraph-2.42/BDgraph/src/util.h | 2 43 files changed, 398 insertions(+), 200 deletions(-)
Title: R Bindings to the 'Quantuccia' Header-Only Essentials of
'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' and the
header-only 'Quantuccia' variant (put together by Peter Caspers) offering
an essential subset of 'QuantLib'. See the included file 'AUTHORS' for a full
list of contributors to both 'QuantLib' and 'Quantuccia'.
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppQuantuccia versions 0.0.1 dated 2017-04-18 and 0.0.2 dated 2017-11-06
RcppQuantuccia-0.0.1/RcppQuantuccia/src/init.c |only RcppQuantuccia-0.0.2/RcppQuantuccia/ChangeLog | 53 ++++ RcppQuantuccia-0.0.2/RcppQuantuccia/DESCRIPTION | 8 RcppQuantuccia-0.0.2/RcppQuantuccia/MD5 | 34 +- RcppQuantuccia-0.0.2/RcppQuantuccia/R/RcppExports.R | 24 +- RcppQuantuccia-0.0.2/RcppQuantuccia/README.md | 34 ++ RcppQuantuccia-0.0.2/RcppQuantuccia/build/partial.rdb |binary RcppQuantuccia-0.0.2/RcppQuantuccia/inst/NEWS.Rd | 8 RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/RcppQuantuccia_RcppExports.h | 46 ++-- RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/RcppQuantuccia_types.h | 54 ++++ RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/ql/math/randomnumbers/sobolrsg.hpp | 6 RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/ql/time/calendars/all.hpp | 7 RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/ql/time/calendars/bespokecalendar.hpp |only RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/ql/time/calendars/canada.hpp |only RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/ql/time/calendars/china.hpp |only RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/ql/time/calendars/germany.hpp |only RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/ql/time/calendars/japan.hpp |only RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/ql/time/calendars/jointcalendar.hpp |only RcppQuantuccia-0.0.2/RcppQuantuccia/inst/include/ql/time/calendars/unitedkingdom.hpp |only RcppQuantuccia-0.0.2/RcppQuantuccia/man/RcppQuantuccia-package.Rd | 30 -- RcppQuantuccia-0.0.2/RcppQuantuccia/src/RcppExports.cpp | 115 +++++----- RcppQuantuccia-0.0.2/RcppQuantuccia/src/dates.cpp | 37 +-- 22 files changed, 295 insertions(+), 161 deletions(-)
More information about RcppQuantuccia at CRAN
Permanent link
Title: Plot Publication-Grade Gene and Genome Maps
Description: Draws gene or genome maps and comparisons between these, in a
publication-grade manner. Starting from simple, common files, it will
draw postscript or PDF files that can be sent as such to journals.
Author: Lionel Guy <lionel.guy@imbim.uu.se>
Maintainer: Lionel Guy <lionel.guy@imbim.uu.se>
Diff between genoPlotR versions 0.8.6 dated 2017-05-16 and 0.8.7 dated 2017-11-06
DESCRIPTION | 12 ++++++------ MD5 | 28 ++++++++++++++-------------- NEWS | 12 ++++++++++++ R/dna_seg.R | 6 ++++-- R/grobs.R | 30 +++++++++++++++++++----------- build/vignette.rds |binary data/barto.RData |binary data/chrY_subseg.RData |binary data/mauve_bbone.RData |binary data/three_genes.RData |binary inst/CITATION | 8 +++++--- inst/doc/genoPlotR.Rnw | 10 +++++----- inst/doc/genoPlotR.pdf |binary man/dna_seg.Rd | 14 ++++++++++++-- vignettes/genoPlotR.Rnw | 10 +++++----- 15 files changed, 82 insertions(+), 48 deletions(-)
Title: Quantify the Relationship Between Development Rate and
Temperature in Ectotherms
Description: A set of functions to quantify the relationship between development
rate and temperature. The package comprises a set of models and estimated parameters
borrowed from a literature review in ectotherms (mostly arthropods).
Author: Francois Rebaudo [aut, cre],
Quentin Struelens [aut]
Maintainer: Francois Rebaudo <francois.rebaudo@ird.fr>
Diff between devRate versions 0.1.4 dated 2017-10-17 and 0.1.5 dated 2017-11-06
devRate-0.1.4/devRate/inst/doc/example_tropical.R |only devRate-0.1.4/devRate/inst/doc/example_tropical.Rmd |only devRate-0.1.4/devRate/inst/doc/example_tropical.html |only devRate-0.1.4/devRate/vignettes/example_tropical.Rmd |only devRate-0.1.5/devRate/DESCRIPTION | 6 - devRate-0.1.5/devRate/MD5 | 105 ++++++++++--------- devRate-0.1.5/devRate/NEWS.md | 6 + devRate-0.1.5/devRate/R/data.R | 71 ++++++++++++ devRate-0.1.5/devRate/R/devRate.R | 33 ++++- devRate-0.1.5/devRate/R/devRate_info.R | 16 ++ devRate-0.1.5/devRate/build/vignette.rds |binary devRate-0.1.5/devRate/data/analytis_77.RData |binary devRate-0.1.5/devRate/data/bayoh_03.RData |binary devRate-0.1.5/devRate/data/beta_16.RData |only devRate-0.1.5/devRate/data/beta_95.RData |binary devRate-0.1.5/devRate/data/bieri1_83.RData |binary devRate-0.1.5/devRate/data/briere1_99.RData |binary devRate-0.1.5/devRate/data/briere2_99.RData |binary devRate-0.1.5/devRate/data/campbell_74.RData |binary devRate-0.1.5/devRate/data/damos_08.RData |binary devRate-0.1.5/devRate/data/damos_11.RData |binary devRate-0.1.5/devRate/data/davidson_44.RData |binary devRate-0.1.5/devRate/data/devRateEqList.RData |binary devRate-0.1.5/devRate/data/harcourtYee_82.RData |binary devRate-0.1.5/devRate/data/hilbertLogan_83.RData |binary devRate-0.1.5/devRate/data/janisch_32.RData |binary devRate-0.1.5/devRate/data/kontodimas_04.RData |binary devRate-0.1.5/devRate/data/lactin1_95.RData |binary devRate-0.1.5/devRate/data/lactin2_95.RData |binary devRate-0.1.5/devRate/data/lamb_92.RData |binary devRate-0.1.5/devRate/data/logan10_76.RData |binary devRate-0.1.5/devRate/data/logan6_76.RData |binary devRate-0.1.5/devRate/data/perf2_11.RData |binary devRate-0.1.5/devRate/data/poly2.RData |binary devRate-0.1.5/devRate/data/poly4.RData |binary devRate-0.1.5/devRate/data/ratkowsky_82.RData |binary devRate-0.1.5/devRate/data/ratkowsky_83.RData |only devRate-0.1.5/devRate/data/regniere_12.RData |binary devRate-0.1.5/devRate/data/rootsq_82.RData |binary devRate-0.1.5/devRate/data/schoolfieldHigh_81.RData |binary devRate-0.1.5/devRate/data/schoolfieldLow_81.RData |binary devRate-0.1.5/devRate/data/schoolfield_81.RData |binary devRate-0.1.5/devRate/data/sharpeDeMichele_77.RData |binary devRate-0.1.5/devRate/data/shi_11.RData |binary devRate-0.1.5/devRate/data/stinner_74.RData |binary devRate-0.1.5/devRate/data/taylor_81.RData |binary devRate-0.1.5/devRate/data/wagner_88.RData |binary devRate-0.1.5/devRate/data/wang_82.RData |binary devRate-0.1.5/devRate/data/wangengel_98.RData |binary devRate-0.1.5/devRate/inst/CITATION |only devRate-0.1.5/devRate/inst/doc/modelEvaluation.R |only devRate-0.1.5/devRate/inst/doc/modelEvaluation.Rmd |only devRate-0.1.5/devRate/inst/doc/modelEvaluation.html |only devRate-0.1.5/devRate/inst/doc/quickUserGuide.R |only devRate-0.1.5/devRate/inst/doc/quickUserGuide.Rmd |only devRate-0.1.5/devRate/inst/doc/quickUserGuide.html |only devRate-0.1.5/devRate/man/beta_16.Rd |only devRate-0.1.5/devRate/man/devRate.Rd | 41 +++++-- devRate-0.1.5/devRate/man/devRateEqList.Rd | 2 devRate-0.1.5/devRate/man/ratkowsky_83.Rd |only devRate-0.1.5/devRate/vignettes/modelEvaluation.Rmd |only devRate-0.1.5/devRate/vignettes/quickUserGuide.Rmd |only 62 files changed, 208 insertions(+), 72 deletions(-)
Title: Goodness-of-Fit for Time-to-Event Data
Description: Extension of 'gof' package to survival models.
Author: Patrick Sfumato and Jean-Marie Boher.
Maintainer: Patrick Sfumato <sfumatop@gmail.com>
Diff between goftte versions 1.0.3 dated 2017-05-31 and 1.0.4 dated 2017-11-06
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- inst/CITATION | 23 ++++++++--------------- man/fcov.crr.Rd | 2 +- man/prop.crr.Rd | 2 +- src/Makevars | 13 ++----------- src/Makevars.win | 7 +++---- src/cumres.cpp | 11 ++++++++++- src/cumres.h | 2 ++ src/fcovcrr.cpp | 2 ++ 10 files changed, 42 insertions(+), 46 deletions(-)
Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al <doi:10.2307/2533043> and the two level random effects model in Beath and Heller <doi:10.1177/1471082X0800900302>. Examples are given for their use in diagnostic testing.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken.beath@mq.edu.au>
Diff between randomLCA versions 1.0-12 dated 2017-07-23 and 1.0-13 dated 2017-11-06
DESCRIPTION | 8 +++---- MD5 | 43 ++++++++++++++++++++-------------------- NAMESPACE | 2 + build/vignette.rds |binary inst/CITATION |only inst/NEWS | 6 +++++ man/AIC.Rd | 6 ++++- man/AIC3.Rd | 4 +++ man/BIC.Rd | 4 +++ man/calcCond2Prob.Rd | 43 +++++++++++++++++++++++----------------- man/calcCondProb.Rd | 41 +++++++++++++++++++++----------------- man/calcMargProb.Rd | 5 ++++ man/classProbs.Rd | 50 +++++++++++++++++++++++++---------------------- man/fitted.Rd | 5 ++++ man/logLik.Rd | 4 +++ man/pap.Rd | 3 +- man/postClassProbs.Rd | 4 +++ man/print.randomLCA.Rd | 6 +++++ man/randomLCA.Rd | 2 + man/ranef.Rd | 9 +++++++- man/refit.Rd | 29 +++++++++++++++++++++++++-- man/simulate.Rd | 1 man/summary.randomLCA.Rd | 4 +++ 23 files changed, 189 insertions(+), 90 deletions(-)
Title: Graphical Model Stability and Variable Selection Procedures
Description: Model stability and variable inclusion plots [Mueller and Welsh
(2010, <doi:10.1111/j.1751-5823.2010.00108.x>); Murray, Heritier and Mueller
(2013, <doi:10.1002/sim.5855>)] as well as the adaptive fence [Jiang et al.
(2008, <doi:10.1214/07-AOS517>); Jiang et al.
(2009, <doi:10.1016/j.spl.2008.10.014>)] for linear and generalised linear models.
Author: Garth Tarr [aut, cre],
Samuel Mueller [aut],
Alan H Welsh [aut]
Maintainer: Garth Tarr <garth.tarr@gmail.com>
Diff between mplot versions 0.7.9 dated 2016-08-18 and 0.8.0 dated 2017-11-06
DESCRIPTION | 24 +-- MD5 | 104 ++++++++++---- NAMESPACE | 2 NEWS | 8 + R/af.R | 14 + R/mplot-package.R | 8 - R/mplot.R | 368 +++++++++++++++++++++++++++++---------------------- R/vis.R | 172 +++++++++++------------ README.md | 27 --- build |only inst/CITATION | 11 - inst/doc |only man/af.Rd | 11 - man/artificialeg.Rd | 1 man/bglmnet.Rd | 1 man/bodyfat.Rd | 1 man/diabetes.Rd | 1 man/fev.Rd | 1 man/mplot-package.Rd | 1 man/mplot.Rd | 1 man/plot.af.Rd | 1 man/plot.bglmnet.Rd | 1 man/plot.vis.Rd | 19 +- man/print.af.Rd | 1 man/print.vis.Rd | 1 man/summary.af.Rd | 1 man/txt.fn.Rd | 1 man/vis.Rd | 14 + man/wallabies.Rd | 1 vignettes |only 30 files changed, 453 insertions(+), 343 deletions(-)
Title: Management of Survey Data and Presentation of Analysis Results
Description: An infrastructure for the management of survey data including
value labels, definable missing values, recoding of variables,
production of code books, and import of (subsets of) 'SPSS' and
'Stata' files is provided. Further, the package allows to produce
tables and data frames of arbitrary descriptive statistics and
(almost) publication-ready tables of regression model
estimates, which can be exported to 'LaTeX' and HTML.
Author: Martin Elff (with contributions from Christopher N. Lawrence, Dave Atkins, Jason W. Morgan, Achim Zeileis)
Maintainer: Martin Elff <memisc@elff.eu>
Diff between memisc versions 0.99.14.3 dated 2017-10-02 and 0.99.14.5 dated 2017-11-06
DESCRIPTION | 17 ++----- MD5 | 36 +++++++-------- R/import-internal-spss-syntax.R | 7 ++ R/mtable-format-latex.R | 9 ++- R/mtable-manip.R | 2 R/mtable.R | 36 ++++++++------- R/spss-syntax-methods.R | 11 ++++ R/toLatex-dataframe.R | 3 - R/toLatex-ftable-matrix.R | 5 +- R/tolatex-ftable.R | 5 +- R/tolatex-matrix.R | 5 +- build/vignette.rds |binary inst/ChangeLog | 20 +++++++- inst/NEWS.Rd | 43 ++++++++++-------- inst/doc/anes48.html | 2 man/mtable-format-latex.Rd | 5 +- man/mtable.Rd | 12 ++++- man/toLatexExtra.Rd | 10 +++- src/readfixed.c | 95 +++++++++++++++++++++++++++++++++++++++- 19 files changed, 239 insertions(+), 84 deletions(-)
Title: Regression Models for Interval Censored Data
Description: Regression models for interval censored data. Currently supports
Cox-PH, proportional odds, and accelerated failure time models. Allows for
semi and fully parametric models (parametric only for accelerated failure
time models) and Bayesian parametric models. Includes functions for easy visual
diagnostics of model fits and imputation of censored data.
Author: Clifford Anderson-Bergman
Maintainer: Clifford Anderson-Bergman <pistacliffcho@gmail.com>
Diff between icenReg versions 2.0.4 dated 2017-10-04 and 2.0.6 dated 2017-11-06
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/CITATION | 26 +++++++++++++++----------- inst/doc/icenReg.pdf |binary src/icenReg_files/ic_bayes.cpp | 9 +++++++-- 5 files changed, 30 insertions(+), 21 deletions(-)
Title: Implementation of Artificial Bee Colony (ABC) Optimization
Description: An implementation of Karaboga (2005) Artificial Bee Colony
Optimization algorithm <http://mf.erciyes.edu.tr/abc/pub/tr06_2005.pdf>.
This (working) version is a Work-in-progress, which is
why it has been implemented using pure R code. This was developed upon the basic
version programmed in C and distributed at the algorithm's official website.
Author: George Vega Yon [aut, cre],
Enyelbert Muñoz [ctb]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between ABCoptim versions 0.14.0 dated 2016-11-17 and 0.15.0 dated 2017-11-06
ChangeLog | 20 ++++ DESCRIPTION | 14 +-- LICENSE |only MD5 | 26 +++--- NAMESPACE | 4 NEWS.md | 10 ++ R/ABCoptim-package.R | 4 R/RcppExports.R | 6 - R/abc_optim.R | 188 ++++++++++++++++++++++++++++++++++++++++------ inst/NEWS |only man/ABCoptim-package.Rd | 14 +-- man/abc_optim.Rd | 128 +++++++++++++++++++++++++------ src/RcppExports.cpp | 22 +++-- src/abc.cpp | 125 +++++++++++++++++++----------- tests/testthat/test-abc.R | 17 ++-- 15 files changed, 441 insertions(+), 137 deletions(-)
Title: Bibliographic Network Analysis
Description: Enables the user to build a citation network/graph from bibliographic data and, based on modularity and heterocitation metrics, assess the degree of awareness/cross-fertilization between two corpora/communities. This toolset is optimized for Scopus data.
Author: Christian Vincenot
Maintainer: Christian Vincenot <christian@vincenot.biz>
Diff between Diderot versions 0.11 dated 2017-09-03 and 0.12 dated 2017-11-06
DESCRIPTION | 8 ++++---- MD5 | 9 ++++++--- R/Diderot.R | 34 ++++++++++++++++++++++++++++++---- man/Diderot-package.Rd | 11 +++++++++-- man/figures |only man/plot_authors_count.Rd |only 6 files changed, 49 insertions(+), 13 deletions(-)