Title: R Commander Plug-in for Fitting Generalized Waring Regression
Models
Description: Provides an Rcmdr "plug-in" based on the GWRM package.
Author: Silverio Vilchez-Lopez [aut, cre],
Antonio Jose Saez-Castillo [aut],
Maria Jose Olmo-Jimenez [aut]
Maintainer: Silverio Vilchez-Lopez <silverio.vilchez@gmail.com>
Diff between RcmdrPlugin.GWRM versions 1.0.1 dated 2016-02-28 and 1.0.2 dated 2017-11-08
RcmdrPlugin.GWRM-1.0.1/RcmdrPlugin.GWRM/tests |only RcmdrPlugin.GWRM-1.0.2/RcmdrPlugin.GWRM/DESCRIPTION | 15 ++++---- RcmdrPlugin.GWRM-1.0.2/RcmdrPlugin.GWRM/MD5 | 14 ++++---- RcmdrPlugin.GWRM-1.0.2/RcmdrPlugin.GWRM/NAMESPACE | 2 - RcmdrPlugin.GWRM-1.0.2/RcmdrPlugin.GWRM/R/RcmdrPlugin.GWRM.r | 17 ++-------- RcmdrPlugin.GWRM-1.0.2/RcmdrPlugin.GWRM/inst/etc/model-capabilities.txt |only RcmdrPlugin.GWRM-1.0.2/RcmdrPlugin.GWRM/man/RcmdrPlugin.GWRM.Rd | 17 ++++------ RcmdrPlugin.GWRM-1.0.2/RcmdrPlugin.GWRM/man/RcmdrPlugin.Utility.Rd | 11 ++---- RcmdrPlugin.GWRM-1.0.2/RcmdrPlugin.GWRM/man/generalizedWaringModel.Rd | 9 ++--- 9 files changed, 38 insertions(+), 47 deletions(-)
More information about RcmdrPlugin.GWRM at CRAN
Permanent link
Title: Automatic Forecasting Procedure
Description: Implements a procedure for forecasting time series data based on
an additive model where non-linear trends are fit with yearly and weekly
seasonality, plus holidays. It works best with daily periodicity data with
at least one year of historical data. Prophet is robust to missing data,
shifts in the trend, and large outliers.
Author: Sean Taylor [cre, aut],
Ben Letham [aut]
Maintainer: Sean Taylor <sjt@fb.com>
Diff between prophet versions 0.2 dated 2017-09-12 and 0.2.1 dated 2017-11-08
DESCRIPTION | 8 ++--- MD5 | 8 ++--- R/prophet.R | 38 +++++++++++++++++--------- inst/doc/quick_start.html | 30 ++++++++++---------- tests/testthat/test_prophet.R | 61 +++++++++++++++++++++++++++--------------- 5 files changed, 88 insertions(+), 57 deletions(-)
Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Description: Extensive functions for L-moments (LMs) and probability-weighted moments
(PWMs), parameter estimation for distributions, LM computation for distributions, and
L-moment ratio diagrams. Maximum likelihood and maximum product of spacings estimation
are also available. LMs for right-tail and left-tail censoring by known or unknown
threshold and by indicator variable are available. Asymmetric (asy) trimmed LMs
(TL-moments, TLMs) are supported. LMs of residual (resid) and reversed (rev) resid life
are implemented along with 13 quantile function operators for reliability and survival
analyses. Exact analytical bootstrap estimates of order statistics, LMs, and variances-
covariances of LMs are provided. The Harri-Coble Tau34-squared Normality Test is available.
Distribution support with "L" (LMs), "TL" (TLMs) and added (+) support for right-tail
censoring (RC) encompasses: Asy Exponential (Exp) Power [L], Asy Triangular [L],
Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp Poisson [L],
Gen Extreme Value [L], Gen Lambda [L,TL], Gen Logistic [L), Gen Normal [L],
Gen Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L],
Kumaraswamy [L], Laplace [L], Linear Mean Resid. Quantile Function [L], Normal [L],
3-p log-Normal [L], Pearson Type III [L], Rayleigh [L], Rev-Gumbel [L+RC], Rice/Rician [L],
Slash [TL], 3-p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L].
Multivariate sample L-comoments (LCMs) are implemented to measure asymmetric associations.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between lmomco versions 2.2.7 dated 2017-03-08 and 2.2.9 dated 2017-11-08
lmomco-2.2.7/lmomco/README |only lmomco-2.2.9/lmomco/DESCRIPTION | 8 - lmomco-2.2.9/lmomco/MD5 | 117 +++++++------- lmomco-2.2.9/lmomco/NAMESPACE | 6 lmomco-2.2.9/lmomco/NEWS | 44 +++++ lmomco-2.2.9/lmomco/R/f2f.R |only lmomco-2.2.9/lmomco/R/f2flo.R | 4 lmomco-2.2.9/lmomco/R/flo2f.R | 3 lmomco-2.2.9/lmomco/R/lmomkap.R | 224 ++++++---------------------- lmomco-2.2.9/lmomco/R/mle2par.R | 22 ++ lmomco-2.2.9/lmomco/R/mps2par.R | 10 + lmomco-2.2.9/lmomco/R/par2cdf2.R | 34 ++-- lmomco-2.2.9/lmomco/R/par2qua2.R | 50 +++++- lmomco-2.2.9/lmomco/R/par2qua2lo.R |only lmomco-2.2.9/lmomco/R/parTLgld.R | 2 lmomco-2.2.9/lmomco/R/parTLgpa.R | 6 lmomco-2.2.9/lmomco/R/parcau.R | 10 - lmomco-2.2.9/lmomco/R/parexp.R | 4 lmomco-2.2.9/lmomco/R/pargam.R | 2 lmomco-2.2.9/lmomco/R/pargep.R | 6 lmomco-2.2.9/lmomco/R/pargev.R | 2 lmomco-2.2.9/lmomco/R/pargld.R | 4 lmomco-2.2.9/lmomco/R/parglo.R | 28 +-- lmomco-2.2.9/lmomco/R/pargno.R | 44 ++--- lmomco-2.2.9/lmomco/R/pargov.R | 4 lmomco-2.2.9/lmomco/R/pargpa.R | 4 lmomco-2.2.9/lmomco/R/pargpaRC.R | 22 +- lmomco-2.2.9/lmomco/R/pargum.R | 10 - lmomco-2.2.9/lmomco/R/parkap.R | 2 lmomco-2.2.9/lmomco/R/parkur.R | 10 - lmomco-2.2.9/lmomco/R/parlap.R | 2 lmomco-2.2.9/lmomco/R/parlmrq.R | 4 lmomco-2.2.9/lmomco/R/parnor.R | 2 lmomco-2.2.9/lmomco/R/parpe3.R | 4 lmomco-2.2.9/lmomco/R/parray.R | 4 lmomco-2.2.9/lmomco/R/parrevgum.R | 8 - lmomco-2.2.9/lmomco/R/parrice.R | 2 lmomco-2.2.9/lmomco/R/parsla.R | 2 lmomco-2.2.9/lmomco/R/parst3.R | 2 lmomco-2.2.9/lmomco/R/partri.R | 4 lmomco-2.2.9/lmomco/R/parwak.R | 8 - lmomco-2.2.9/lmomco/R/parwei.R | 8 - lmomco-2.2.9/lmomco/R/prettydist.R | 1 lmomco-2.2.9/lmomco/R/x2xlo.R | 14 + lmomco-2.2.9/lmomco/man/are.parkap.valid.Rd | 7 lmomco-2.2.9/lmomco/man/cdfgpa.Rd | 2 lmomco-2.2.9/lmomco/man/cdfkap.Rd | 11 - lmomco-2.2.9/lmomco/man/f2f.Rd |only lmomco-2.2.9/lmomco/man/f2flo.Rd | 9 - lmomco-2.2.9/lmomco/man/flo2f.Rd | 8 - lmomco-2.2.9/lmomco/man/lmomkap.Rd | 24 ++- lmomco-2.2.9/lmomco/man/mle2par.Rd | 4 lmomco-2.2.9/lmomco/man/mps2par.Rd | 4 lmomco-2.2.9/lmomco/man/par2cdf2.Rd | 26 +-- lmomco-2.2.9/lmomco/man/par2qua2.Rd | 55 +++--- lmomco-2.2.9/lmomco/man/par2qua2lo.Rd |only lmomco-2.2.9/lmomco/man/pargno.Rd | 4 lmomco-2.2.9/lmomco/man/parkap.Rd | 4 lmomco-2.2.9/lmomco/man/quaaep4.Rd | 5 lmomco-2.2.9/lmomco/man/quaaep4kapmix.Rd | 6 lmomco-2.2.9/lmomco/man/quakap.Rd | 11 - lmomco-2.2.9/lmomco/man/x2xlo.Rd | 7 62 files changed, 465 insertions(+), 469 deletions(-)
Title: International Assessment Data Manager
Description: Provides tools for importing, merging, and analysing data from
international assessment studies (TIMSS, PIRLS, PISA. ICILS, and PIAAC).
Author: Daniel Caro <daniel.caro@education.ox.ac.uk>, Przemyslaw Biecek <przemyslaw.biecek@gmail.com>
Maintainer: Daniel Caro <daniel.caro@education.ox.ac.uk>
Diff between intsvy versions 2.0 dated 2017-06-15 and 2.1 dated 2017-11-08
DESCRIPTION | 8 ++-- MD5 | 37 ++++++++++---------- R/intsvy.select.merge.R | 21 +++++------ R/intsvy.var.label.R | 24 ++++++------- R/pirls.select.merge.R | 4 +- R/pisa.select.merge.R | 9 ++--- R/pisa.var.label.R | 17 ++------- R/plot.intsvy.mean.R | 4 +- R/plot.intsvy.table.R | 78 +++++++++++++++++++++++++++++++------------- R/timssg4.select.merge.R | 4 +- R/timssg8.select.merge.R | 10 ++--- README.md | 3 + inst |only man/intsvy-package.Rd | 7 +-- man/intsvy.select.merge.Rd | 5 -- man/pirls.select.merge.Rd | 5 -- man/pisa.select.merge.Rd | 5 -- man/plot.intsvy.table.Rd | 12 ++++++ man/timssg4.select.merge.Rd | 6 --- man/timssg8.select.merge.Rd | 5 -- 20 files changed, 143 insertions(+), 121 deletions(-)
Title: Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
Description: Create, store, access, and manipulate massive matrices.
Matrices are allocated to shared memory and may use memory-mapped
files. Packages 'biganalytics', 'bigtabulate', 'synchronicity', and
'bigalgebra' provide advanced functionality.
Author: Michael J. Kane <kaneplusplus@gmail.com>, John W. Emerson
<jayemerson@gmail.com>, Peter Haverty <haverty.peter@gene.com>, and Charles
Determan Jr. <cdetermanjr@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between bigmemory versions 4.5.27 dated 2017-11-08 and 4.5.28 dated 2017-11-08
DESCRIPTION | 10 ++-- MD5 | 12 ++--- NEWS | 3 + R/bigmemory.R | 80 +++++++++++++++++++++++++++++++-------- inst/doc/Overview.pdf |binary man/extract-methods.Rd | 18 ++++++++ tests/testthat/test_assignment.R | 60 +++++++++++++++++++++++++++++ 7 files changed, 156 insertions(+), 27 deletions(-)
Title: Statistical Analysis of Chemistry, Histopathology, and
Reproduction Endpoints Including Repeated Measures and
Multi-Generation Studies
Description: A front end for the statistical analyses involved in the tier II endocrine
disruptor screening program. The analyses available to this package are:
Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS),
a Standard Cochran-Armitage test for trend By Slices (SCABS),
mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test
Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated
measures ANOVA, and Dunnett test.
Author: Joe Swintek [aut, cre],
Kevin Flynn [ctb],
Jon Haselman [ctb]
Maintainer: Joe Swintek <swintek.joe@epa.gov>
Diff between StatCharrms versions 0.90.4 dated 2017-06-20 and 0.90.6 dated 2017-11-08
StatCharrms-0.90.4/StatCharrms/vignettes/Dunnett.png |only StatCharrms-0.90.4/StatCharrms/vignettes/JTTest.png |only StatCharrms-0.90.4/StatCharrms/vignettes/MonoTest.png |only StatCharrms-0.90.4/StatCharrms/vignettes/StandardAnl5-n.png |only StatCharrms-0.90.4/StatCharrms/vignettes/StandardAnl5.png |only StatCharrms-0.90.6/StatCharrms/DESCRIPTION | 8 StatCharrms-0.90.6/StatCharrms/MD5 | 69 - StatCharrms-0.90.6/StatCharrms/NAMESPACE | 4 StatCharrms-0.90.6/StatCharrms/R/Run.StatCharrms.R | 25 StatCharrms-0.90.6/StatCharrms/R/ShowChangeLog.R | 21 StatCharrms-0.90.6/StatCharrms/R/StatCharrms-internal.R | 14 StatCharrms-0.90.6/StatCharrms/R/ZZZ.r | 4 StatCharrms-0.90.6/StatCharrms/R/addMultiSpec.std.R | 5 StatCharrms-0.90.6/StatCharrms/R/autoStdAnylsis.R | 3 StatCharrms-0.90.6/StatCharrms/R/buildResultsWindow.R | 38 - StatCharrms-0.90.6/StatCharrms/R/forceStdAnalysis.R | 57 + StatCharrms-0.90.6/StatCharrms/R/jonckheereTerpstraTest.R | 8 StatCharrms-0.90.6/StatCharrms/R/makeSummaryTable.R | 11 StatCharrms-0.90.6/StatCharrms/R/oneWayDunnettTest.R | 12 StatCharrms-0.90.6/StatCharrms/R/responseTransform.R | 3 StatCharrms-0.90.6/StatCharrms/R/runMultiGen.R | 117 ++- StatCharrms-0.90.6/StatCharrms/R/williamsTest.r |only StatCharrms-0.90.6/StatCharrms/build/vignette.rds |binary StatCharrms-0.90.6/StatCharrms/data/williamsTestLookUpTable.rda |only StatCharrms-0.90.6/StatCharrms/inst/doc/StatCharrms.Rnw | 372 ++++++---- StatCharrms-0.90.6/StatCharrms/inst/doc/StatCharrms.pdf |binary StatCharrms-0.90.6/StatCharrms/man/StatCharrms-package.Rd | 2 StatCharrms-0.90.6/StatCharrms/man/buildResultsWindow.Rd | 1 StatCharrms-0.90.6/StatCharrms/man/forceStdAnalysis.Rd | 7 StatCharrms-0.90.6/StatCharrms/man/jonckheereTerpstraTest.Rd | 8 StatCharrms-0.90.6/StatCharrms/man/makeSummaryTable.Rd | 11 StatCharrms-0.90.6/StatCharrms/man/oneWayDunnettTest.Rd | 9 StatCharrms-0.90.6/StatCharrms/man/runMultiGen.Rd | 6 StatCharrms-0.90.6/StatCharrms/man/williamsTest.Rd |only StatCharrms-0.90.6/StatCharrms/man/williamsTestLookUpTable.Rd |only StatCharrms-0.90.6/StatCharrms/vignettes/DunnettNew.png |only StatCharrms-0.90.6/StatCharrms/vignettes/JTTest-New.png |only StatCharrms-0.90.6/StatCharrms/vignettes/MonoTest-New.png |only StatCharrms-0.90.6/StatCharrms/vignettes/RGtk2W.png |only StatCharrms-0.90.6/StatCharrms/vignettes/StandardAnl5-New.png |only StatCharrms-0.90.6/StatCharrms/vignettes/StatCharrms.Rnw | 372 ++++++---- StatCharrms-0.90.6/StatCharrms/vignettes/StatCharrms.tex | 372 ++++++---- StatCharrms-0.90.6/StatCharrms/vignettes/WillTest.png |only 43 files changed, 1093 insertions(+), 466 deletions(-)
Title: Deep Boosting Ensemble Modeling
Description: Provides deep boosting models training, evaluation, predicting and
hyper parameter optimising using grid search and cross validation.
Based on Google's Deep Boosting algorithm, and Google's C++ implementation.
Cortes, C., Mohri, M., & Syed, U. (2014) <http://machinelearning.wustl.edu/mlpapers/papers/icml2014c2_cortesb14>.
Author: Daniel Marcous [aut, cre], Yotam Sandbank [aut], Google Inc. [cph]
Maintainer: Daniel Marcous <dmarcous@gmail.com>
Diff between deepboost versions 0.1.5 dated 2016-12-29 and 0.1.6 dated 2017-11-08
DESCRIPTION | 10 +++--- MD5 | 66 ++++++++++++++++++++-------------------- R/RcppExports.R | 10 ++++-- R/deepboost.R | 45 +++++++++++++++++++++------ man/Deepboost.Rd | 1 man/adult.Rd | 1 man/australian.Rd | 1 man/banana.Rd | 1 man/bupa.Rd | 1 man/coli2000.Rd | 1 man/deepboost.default.Rd | 1 man/deepboost.evaluate.Rd | 1 man/deepboost.formula.Rd | 1 man/deepboost.gridSearch.Rd | 1 man/deepboost.predict.Rd | 5 +-- man/deepboost.print.Rd | 1 man/deepboost.train.Rd | 1 man/haberman.Rd | 1 man/heart.Rd | 1 man/magic.Rd | 1 man/pima.Rd | 1 man/predict-Deepboost-method.Rd | 5 +-- man/show-Deepboost-method.Rd | 1 man/sonar.Rd | 1 src/RcppExports.cpp | 31 ++++++++++++++++-- src/boost.cc | 14 +++++++- src/boost.h | 3 + src/deepboost_C.cc | 8 ++++ src/deepboost_C.h | 4 ++ src/deepboost_R.cpp | 12 +++++++ src/deepboost_converters.cpp | 19 +++++++++++ src/deepboost_converters.h | 3 + src/types.h | 1 tests/testthat/test_basic.R | 13 +++++++ 34 files changed, 189 insertions(+), 78 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre],
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-7 dated 2017-09-07 and 1.4-8 dated 2017-11-08
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/helpers.R | 5 +++-- build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary inst/NEWS | 4 ++++ inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.R | 1 - inst/doc/generalsiminf.Rnw | 1 - inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary tests/bugfix.Rout.save | 14 +++++++------- vignettes/generalsiminf.Rnw | 1 - 14 files changed, 31 insertions(+), 29 deletions(-)
Title: Manage Massive Matrices with Shared Memory and Memory-Mapped
Files
Description: Create, store, access, and manipulate massive matrices.
Matrices are allocated to shared memory and may use memory-mapped
files. Packages 'biganalytics', 'bigtabulate', 'synchronicity', and
'bigalgebra' provide advanced functionality.
Author: Michael J. Kane <kaneplusplus@gmail.com>, John W. Emerson
<jayemerson@gmail.com>, Peter Haverty <haverty.peter@gene.com>, and Charles
Determan Jr. <cdetermanjr@gmail.com>
Maintainer: Michael J. Kane <bigmemoryauthors@gmail.com>
Diff between bigmemory versions 4.5.19 dated 2016-03-28 and 4.5.27 dated 2017-11-08
DESCRIPTION | 14 MD5 | 88 ++-- NAMESPACE | 3 NEWS | 7 R/RcppExports.R | 144 ++++--- R/bigmemory.R | 388 +++++++++++++-------- R/hello-bigmemory.R | 52 +- R/zzz.R | 2 build/vignette.rds |binary inst/doc/Overview.pdf |binary inst/include/bigmemory/util.h | 4 man/GetMatrixSize.Rd | 1 man/as.big.matrix-methods.Rd | 6 man/as.matrix-big.matrix-method.Rd | 1 man/attach.big.matrix.Rd | 17 man/big.matrix-class.Rd | 12 man/big.matrix.Rd | 46 +- man/big.matrix.descriptor-class.Rd | 16 man/bigmemory-package.Rd | 64 ++- man/deepcopy.Rd | 4 man/dim-big.matrix-method.Rd | 1 man/dimnames-methods.Rd | 1 man/extract-methods.Rd | 43 +- man/flush-methods.Rd | 1 man/head-methods.Rd | 1 man/is.float-numeric-method.Rd | 1 man/is.float.Rd | 1 man/length-big.matrix-method.Rd | 1 man/morder.Rd | 13 man/mwhich-methods.Rd | 4 man/mwhich.Rd | 7 man/ncol-methods.Rd | 1 man/print-big.matrix-method.Rd | 1 man/sub.big.matrix.Rd | 7 man/typeof-big.matrix-method.Rd | 3 man/write.big.matrix.Rd | 16 src/BigMatrix.cpp | 134 ++++++- src/RcppExports.cpp | 672 +++++++++++++++++++++---------------- src/bigmemory.cpp | 525 ++++++++++++++++++++++++---- src/deepcopy.cpp | 13 tests/testthat/test_assignment.R |only tests/testthat/test_attach_path.R |only tests/testthat/test_deepcopy.R | 2 tests/testthat/test_morder.R | 4 tests/testthat/test_raw.R |only tests/testthat/test_read.R | 4 tests/testthat/test_shared.R |only 47 files changed, 1553 insertions(+), 772 deletions(-)
Title: Hidden Markov Models for Life Sequences and Other Multivariate,
Multichannel Categorical Time Series
Description: Designed for fitting hidden (latent) Markov models and mixture
hidden Markov models for social sequence data and other categorical time series.
Also some more restricted versions of these type of models are available: Markov
models, mixture Markov models, and latent class models. The package supports
models for one or multiple subjects with one or multiple parallel sequences
(channels). External covariates can be added to explain cluster membership in
mixture models. The package provides functions for evaluating and comparing
models, as well as functions for easy plotting of multichannel sequence data and
hidden Markov models. Models are estimated using maximum likelihood via the EM
algorithm and/or direct numerical maximization with analytical gradients. All
main algorithms are written in C++ with support for parallel computation.
Author: Jouni Helske, Satu Helske
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between seqHMM versions 1.0.7 dated 2017-04-04 and 1.0.8 dated 2017-11-08
seqHMM-1.0.7/seqHMM/R/help_data.R |only seqHMM-1.0.7/seqHMM/R/plot.igraph2.R |only seqHMM-1.0.7/seqHMM/src/init.c |only seqHMM-1.0.7/seqHMM/vignettes/seqHMM-concordance.tex |only seqHMM-1.0.7/seqHMM/vignettes/seqHMM_algorithms-concordance.tex |only seqHMM-1.0.8/seqHMM/DESCRIPTION | 13 seqHMM-1.0.8/seqHMM/MD5 | 207 - seqHMM-1.0.8/seqHMM/NEWS | 14 seqHMM-1.0.8/seqHMM/R/HMMplot.R | 52 seqHMM-1.0.8/seqHMM/R/RcppExports.R | 60 seqHMM-1.0.8/seqHMM/R/SSPlotter.R | 120 seqHMM-1.0.8/seqHMM/R/build_mmm.R | 500 +-- seqHMM-1.0.8/seqHMM/R/check_deprecated_args.R |only seqHMM-1.0.8/seqHMM/R/gridplot.R | 1347 ++++----- seqHMM-1.0.8/seqHMM/R/mHMMplotgrid.R | 22 seqHMM-1.0.8/seqHMM/R/mHMMplotint.R | 8 seqHMM-1.0.8/seqHMM/R/mssplot.R | 12 seqHMM-1.0.8/seqHMM/R/plot.hmm.R | 1169 ++++---- seqHMM-1.0.8/seqHMM/R/plot.mhmm.R | 395 +- seqHMM-1.0.8/seqHMM/R/posterior_probs.R | 61 seqHMM-1.0.8/seqHMM/R/ssp.R | 1416 +++++----- seqHMM-1.0.8/seqHMM/R/ssplot.R | 494 +-- seqHMM-1.0.8/seqHMM/R/ssplotM.R | 2 seqHMM-1.0.8/seqHMM/build/vignette.rds |binary seqHMM-1.0.8/seqHMM/inst/CITATION | 20 seqHMM-1.0.8/seqHMM/inst/doc/seqHMM.R | 8 seqHMM-1.0.8/seqHMM/inst/doc/seqHMM.Rnw | 4 seqHMM-1.0.8/seqHMM/inst/doc/seqHMM.pdf |binary seqHMM-1.0.8/seqHMM/inst/doc/seqHMM_algorithms.pdf |binary seqHMM-1.0.8/seqHMM/inst/doc/seqHMM_estimation.pdf |binary seqHMM-1.0.8/seqHMM/inst/doc/seqHMM_visualization.R | 14 seqHMM-1.0.8/seqHMM/inst/doc/seqHMM_visualization.Rnw | 20 seqHMM-1.0.8/seqHMM/inst/doc/seqHMM_visualization.pdf |binary seqHMM-1.0.8/seqHMM/man/TraMineR_imports.Rd | 3 seqHMM-1.0.8/seqHMM/man/biofam3c.Rd | 85 seqHMM-1.0.8/seqHMM/man/build_hmm.Rd | 1 seqHMM-1.0.8/seqHMM/man/build_lcm.Rd | 1 seqHMM-1.0.8/seqHMM/man/build_mhmm.Rd | 1 seqHMM-1.0.8/seqHMM/man/build_mm.Rd | 1 seqHMM-1.0.8/seqHMM/man/build_mmm.Rd | 3 seqHMM-1.0.8/seqHMM/man/colorpalette.Rd | 1 seqHMM-1.0.8/seqHMM/man/estimate_coef.Rd | 1 seqHMM-1.0.8/seqHMM/man/fit_model.Rd | 1 seqHMM-1.0.8/seqHMM/man/forward_backward.Rd | 1 seqHMM-1.0.8/seqHMM/man/gridplot.Rd | 11 seqHMM-1.0.8/seqHMM/man/hidden_paths.Rd | 1 seqHMM-1.0.8/seqHMM/man/hmm_biofam.Rd | 1 seqHMM-1.0.8/seqHMM/man/hmm_mvad.Rd | 1 seqHMM-1.0.8/seqHMM/man/logLik.hmm.Rd | 1 seqHMM-1.0.8/seqHMM/man/logLik.mhmm.Rd | 1 seqHMM-1.0.8/seqHMM/man/mc_to_sc.Rd | 1 seqHMM-1.0.8/seqHMM/man/mc_to_sc_data.Rd | 1 seqHMM-1.0.8/seqHMM/man/mhmm_biofam.Rd | 1 seqHMM-1.0.8/seqHMM/man/mhmm_mvad.Rd | 1 seqHMM-1.0.8/seqHMM/man/mssplot.Rd | 16 seqHMM-1.0.8/seqHMM/man/plot.hmm.Rd | 12 seqHMM-1.0.8/seqHMM/man/plot.mhmm.Rd | 15 seqHMM-1.0.8/seqHMM/man/plot.ssp.Rd | 1 seqHMM-1.0.8/seqHMM/man/plot_colors.Rd | 1 seqHMM-1.0.8/seqHMM/man/posterior_probs.Rd | 1 seqHMM-1.0.8/seqHMM/man/print.Rd | 4 seqHMM-1.0.8/seqHMM/man/separate_mhmm.Rd | 1 seqHMM-1.0.8/seqHMM/man/seqHMM-deprecated.Rd | 7 seqHMM-1.0.8/seqHMM/man/seqHMM.Rd | 1 seqHMM-1.0.8/seqHMM/man/simulate_hmm.Rd | 1 seqHMM-1.0.8/seqHMM/man/simulate_mhmm.Rd | 1 seqHMM-1.0.8/seqHMM/man/simulate_pars.Rd | 3 seqHMM-1.0.8/seqHMM/man/ssp.Rd | 16 seqHMM-1.0.8/seqHMM/man/ssplot.Rd | 11 seqHMM-1.0.8/seqHMM/man/summary.mhmm.Rd | 1 seqHMM-1.0.8/seqHMM/man/trim_model.Rd | 1 seqHMM-1.0.8/seqHMM/man/vcov.mhmm.Rd | 1 seqHMM-1.0.8/seqHMM/src/EM.cpp | 109 seqHMM-1.0.8/seqHMM/src/EMx.cpp | 127 seqHMM-1.0.8/seqHMM/src/RcppExports.cpp | 190 - seqHMM-1.0.8/seqHMM/src/forward_backward.h |only seqHMM-1.0.8/seqHMM/src/forwardbackward.cpp | 23 seqHMM-1.0.8/seqHMM/src/forwardbackwardx.cpp | 15 seqHMM-1.0.8/seqHMM/src/internalBackward.cpp | 6 seqHMM-1.0.8/seqHMM/src/internalForward.cpp | 4 seqHMM-1.0.8/seqHMM/src/logLikHMM.cpp | 7 seqHMM-1.0.8/seqHMM/src/logLikMixHMM.cpp | 9 seqHMM-1.0.8/seqHMM/src/logSumExp.cpp | 2 seqHMM-1.0.8/seqHMM/src/log_EM.cpp | 23 seqHMM-1.0.8/seqHMM/src/log_EMx.cpp | 29 seqHMM-1.0.8/seqHMM/src/log_forward_backward.h |only seqHMM-1.0.8/seqHMM/src/log_forwardbackward.cpp | 8 seqHMM-1.0.8/seqHMM/src/log_forwardbackwardx.cpp | 11 seqHMM-1.0.8/seqHMM/src/log_internalBackward.cpp | 4 seqHMM-1.0.8/seqHMM/src/log_internalForward.cpp | 3 seqHMM-1.0.8/seqHMM/src/log_logLikHMM.cpp | 6 seqHMM-1.0.8/seqHMM/src/log_logLikMixHMM.cpp | 9 seqHMM-1.0.8/seqHMM/src/log_objective.cpp | 9 seqHMM-1.0.8/seqHMM/src/log_objectivex.cpp | 11 seqHMM-1.0.8/seqHMM/src/log_optCoef.cpp | 8 seqHMM-1.0.8/seqHMM/src/logsumexp.h |only seqHMM-1.0.8/seqHMM/src/objective.cpp | 7 seqHMM-1.0.8/seqHMM/src/objectivex.cpp | 55 seqHMM-1.0.8/seqHMM/src/optCoef.cpp | 8 seqHMM-1.0.8/seqHMM/src/optcoef.h |only seqHMM-1.0.8/seqHMM/src/reparma.cpp | 4 seqHMM-1.0.8/seqHMM/src/reparma.h |only seqHMM-1.0.8/seqHMM/src/sa_opt_coef.cpp | 28 seqHMM-1.0.8/seqHMM/src/seqHMM.h | 59 seqHMM-1.0.8/seqHMM/src/uv_forwardbackward.cpp | 2 seqHMM-1.0.8/seqHMM/src/varcoef.cpp | 7 seqHMM-1.0.8/seqHMM/src/viterbi.cpp | 7 seqHMM-1.0.8/seqHMM/src/viterbix.cpp | 9 seqHMM-1.0.8/seqHMM/vignettes/seqHMM.Rnw | 4 seqHMM-1.0.8/seqHMM/vignettes/seqHMM_visualization.Rnw | 20 110 files changed, 3459 insertions(+), 3535 deletions(-)
Title: Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Description: Fits linear models with endogenous regressor using latent
instrumental variable approaches. The methods included in the package
are Lewbel's (1997) <doi:10.2307/2171884> higher moments approach as well as Lewbel's (2012) <doi:10.1080/07350015.2012.643126>
heteroskedasticity approach, Park and Gupta's (2012) <doi:10.1287/mksc.1120.0718>joint estimation method
that uses Gaussian copula and Kim and Frees's (2007) <doi:10.1007/s11336-007-9008-1> multilevel generalized
method of moment approach that deals with endogeneity in a multilevel setting.
These are statistical techniques to address the endogeneity problem where no
external instrumental variables are needed.
This version:
- includes an omitted variable test in the multilevel estimation. It is reported in the summary() function of the
multilevelIV() function.
- resolves the error "Error in listIDs[, 1] : incorrect number of dimensions" when using the multilevelIV() function.
- a new simulated dataset is provided, dataMultilevelIV, on which to exemplify the multilevelIV() function.
Author: Raluca Gui,
Markus Meierer,
Rene Algesheimer
Maintainer: Raluca Gui <raluca.gui@business.uzh.ch>
Diff between REndo versions 1.2 dated 2017-04-10 and 1.3 dated 2017-11-08
REndo-1.2/REndo/R/mixedGMM.R |only REndo-1.2/REndo/R/tScores.R |only REndo-1.2/REndo/data/tScores.RData |only REndo-1.2/REndo/man/mixedGMM.Rd |only REndo-1.2/REndo/man/tScores.Rd |only REndo-1.3/REndo/DESCRIPTION | 27 +-- REndo-1.3/REndo/MD5 | 81 +++++------ REndo-1.3/REndo/NAMESPACE | 1 REndo-1.3/REndo/R/cop_Cont1.R | 68 +++++---- REndo-1.3/REndo/R/cop_Cont2.R | 39 +++-- REndo-1.3/REndo/R/cop_Discrete.R | 56 ++++--- REndo-1.3/REndo/R/cop_bootsSE.R | 79 ++++++---- REndo-1.3/REndo/R/cop_pStar.R | 1 REndo-1.3/REndo/R/copulaCorrection.R | 61 ++++---- REndo-1.3/REndo/R/copulaCorrection_class.R | 3 REndo-1.3/REndo/R/f_hetErrorsIV.R | 1 REndo-1.3/REndo/R/f_multilevelGMM.R | 165 ++++++++++++++++------ REndo-1.3/REndo/R/hetErrorsIV.R | 18 +- REndo-1.3/REndo/R/higherMomentsIV.R | 39 +++-- REndo-1.3/REndo/R/internalIV.R | 42 +++-- REndo-1.3/REndo/R/latentIV.R | 2 REndo-1.3/REndo/R/methods_copulaCorrection.R | 43 ++++- REndo-1.3/REndo/R/methods_latentIV.R | 2 REndo-1.3/REndo/R/methods_multilevelIV.R | 76 ++++++---- REndo-1.3/REndo/R/multilevelIV.R | 166 ++++++++++++++--------- REndo-1.3/REndo/R/multilevelIV_class.R | 16 +- REndo-1.3/REndo/data/dataCopC1.RData |binary REndo-1.3/REndo/data/dataCopC2.RData |binary REndo-1.3/REndo/data/dataCopDis.RData |binary REndo-1.3/REndo/data/dataHetIV.RData |only REndo-1.3/REndo/data/dataHigherMoments.RData |binary REndo-1.3/REndo/data/dataMultilevelIV.RData |only REndo-1.3/REndo/man/boots.Rd | 13 - REndo-1.3/REndo/man/copulaCont1.Rd | 16 -- REndo-1.3/REndo/man/copulaCorrection.Rd | 33 +--- REndo-1.3/REndo/man/copulaDiscrete.Rd | 15 -- REndo-1.3/REndo/man/copulaMethod2.Rd | 13 - REndo-1.3/REndo/man/copulaRendo-class.Rd | 2 REndo-1.3/REndo/man/dataHetIV.Rd |only REndo-1.3/REndo/man/dataMultilevelIV.Rd |only REndo-1.3/REndo/man/hetErrorsIV.Rd | 11 - REndo-1.3/REndo/man/higherMomentsIV.Rd | 26 +-- REndo-1.3/REndo/man/internalIV.Rd | 20 -- REndo-1.3/REndo/man/mixedREndo.Rd | 6 REndo-1.3/REndo/man/multilevelIV.Rd | 17 +- REndo-1.3/REndo/man/summary-mixedREndo-method.Rd | 2 46 files changed, 683 insertions(+), 477 deletions(-)
Title: Update Chinese ID Card Number to Eighteen Digits
Description: The digits of the old version (before 2000 year) of 'Chinese ID Card Number' is 15, this package aims to update to the current version of 18 digits.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between IDCard versions 0.1.0 dated 2017-09-08 and 0.2.0 dated 2017-11-08
DESCRIPTION | 6 ++--- MD5 | 8 ++++--- R/id.15to18.R | 52 ++++++++++-------------------------------------- R/id.15to18.single.R |only man/id.15to18.Rd | 5 +++- man/id.15to18.single.Rd |only 6 files changed, 23 insertions(+), 48 deletions(-)
Title: A Collection of Graphon Estimation Methods
Description: Provides a not-so-comprehensive list of methods for estimating graphon,
a symmetric measurable function, from a single or multiple of observed networks.
For a detailed introduction on graphon and popular estimation techniques,
see the paper by Orbanz, P. and Roy, D.M.(2014) <doi:10.1109/TPAMI.2014.2334607>.
It also contains several auxiliary functions for generating sample networks
using various network models and graphons.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kyou@nd.edu>
Diff between graphon versions 0.1.1 dated 2017-09-06 and 0.2.0 dated 2017-11-08
DESCRIPTION | 8 +++----- MD5 | 4 ++-- R/auxiliary.R | 15 ++++++++++++++- 3 files changed, 19 insertions(+), 8 deletions(-)
Title: Tests for Right and Interval-Censored Survival Data Based on the
Fleming-Harrington Class
Description: Functions to compare two or more survival curves with:
a) The Fleming-Harrington test for right-censored data based on permutations and on counting processes.
b) An extension of the Fleming-Harrington test for interval-censored data based on a permutation distribution and on a score vector distribution.
Author: Ramon Oller, Klaus Langohr
Maintainer: Ramon Oller <ramon.oller@uvic.cat>
Diff between FHtest versions 1.3 dated 2015-07-31 and 1.4 dated 2017-11-08
DESCRIPTION | 8 - MD5 | 45 +++++----- R/FHtesticp.default.R | 183 ++++++++++++++++++++++--------------------- R/FHtesticp.formula.R | 10 +- R/FHtestics.default.R | 189 ++++++++++++++++++++++----------------------- R/FHtestics.formula.R | 10 +- R/FHtestrcc.R | 2 R/FHtestrcc.default.R | 151 +++++++++++++++++------------------- R/FHtestrcc.formula.R | 10 +- R/FHtestrcp.R | 2 R/FHtestrcp.default.R | 209 +++++++++++++++++++++++++------------------------- R/FHtestrcp.formula.R | 10 +- R/ics.R | 15 +-- R/print.FHtesticp.R | 28 +++--- R/print.FHtestics.R | 18 ++-- R/print.FHtestrcc.R | 25 ++--- R/print.FHtestrcp.R | 24 ++--- R/rcc.R | 2 inst |only man/FHtest-package.Rd | 7 + man/FHtesticp.Rd | 40 +++++---- man/FHtestics.Rd | 33 ++++--- man/FHtestrcc.Rd | 14 +-- man/FHtestrcp.Rd | 21 ++--- 24 files changed, 535 insertions(+), 521 deletions(-)
Title: Statistical Tools for Covariance Analysis
Description: Covariance is of universal prevalence across various disciplines within statistics.
We provide a rich collection of geometric and inferential tools for convenient analysis of
covariance structures, topics including distance measures, mean covariance estimator,
covariance hypothesis test for one-sample and two-sample cases, and covariance estimation.
For an introduction to covariance in multivariate statistical analysis,
see Schervish (1987) <doi:10.1214/ss/1177013111>.
Author: Kyoungjae Lee [aut],
Lizhen Lin [ctb],
Kisung You [aut, cre]
Maintainer: Kisung You <kyou@nd.edu>
Diff between CovTools versions 0.1.0 dated 2017-10-16 and 0.2.0 dated 2017-11-08
CovTools-0.1.0/CovTools/R/collection.dist.R |only CovTools-0.1.0/CovTools/R/collection.mean.R |only CovTools-0.1.0/CovTools/R/collection.shapes.R |only CovTools-0.1.0/CovTools/R/collection.test1.R |only CovTools-0.1.0/CovTools/R/collection.test2.R |only CovTools-0.2.0/CovTools/DESCRIPTION | 14 +++++---- CovTools-0.2.0/CovTools/MD5 | 37 ++++++++++++++++-------- CovTools-0.2.0/CovTools/NAMESPACE | 19 ++++++++++++ CovTools-0.2.0/CovTools/R/CovEst.R |only CovTools-0.2.0/CovTools/R/CovEst.auto.R |only CovTools-0.2.0/CovTools/R/PreEst.R |only CovTools-0.2.0/CovTools/R/PreEst.auto.R |only CovTools-0.2.0/CovTools/R/RcppExports.R | 6 +++ CovTools-0.2.0/CovTools/R/fns.covest.R |only CovTools-0.2.0/CovTools/R/fns.dist.R |only CovTools-0.2.0/CovTools/R/fns.mean.R |only CovTools-0.2.0/CovTools/R/fns.preest.R |only CovTools-0.2.0/CovTools/R/fns.shapes.R |only CovTools-0.2.0/CovTools/R/fns.test1.R |only CovTools-0.2.0/CovTools/R/fns.test2.R |only CovTools-0.2.0/CovTools/R/init.R |only CovTools-0.2.0/CovTools/R/package-CovTools.R | 26 ++++++++++++++-- CovTools-0.2.0/CovTools/man/CovEst.Rd |only CovTools-0.2.0/CovTools/man/CovEst.auto.Rd |only CovTools-0.2.0/CovTools/man/CovTools-package.Rd | 15 +++++++-- CovTools-0.2.0/CovTools/man/PreEst.Rd |only CovTools-0.2.0/CovTools/man/PreEst.auto.Rd |only CovTools-0.2.0/CovTools/src/Makevars | 2 - CovTools-0.2.0/CovTools/src/RcppExports.cpp | 13 ++++++++ CovTools-0.2.0/CovTools/src/rcpp_covest.cpp |only CovTools-0.2.0/CovTools/src/rcpp_preest.cpp |only 31 files changed, 106 insertions(+), 26 deletions(-)
Title: A 'Linter' for R Code
Description: Checks adherence to a given style, syntax errors and possible
semantic issues. Supports on the fly checking of R code edited with 'RStudio IDE', 'Emacs',
'Vim', 'Sublime Text' and 'Atom'.
Author: Jim Hester [aut, cre]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between lintr versions 1.0.1 dated 2017-08-10 and 1.0.2 dated 2017-11-08
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 3 +++ README.md | 2 +- build/vignette.rds |binary inst/doc/creating_linters.html | 4 ++-- tests/testthat/test-cache.R | 18 +++++++----------- 7 files changed, 23 insertions(+), 24 deletions(-)
Title: Evaluation of Tweedie Exponential Family Models
Description: Maximum likelihood computations for Tweedie families, including the series expansion (Dunn and Smyth, 2005) and the Fourier inversion (Dunn and Smyth, 2008), and related methods.
Author: Peter K. Dunn [cre, aut]
Maintainer: Peter K. Dunn <pdunn2@usc.edu.au>
Diff between tweedie versions 2.2.5 dated 2016-12-19 and 2.3.0 dated 2017-11-08
DESCRIPTION | 18 MD5 | 34 NAMESPACE | 6 NEWS | 29 R/tweedie.R |12904 ++++++++++++++++++++++++------------------------ build |only inst/CITATION | 9 man/AICtweedie.Rd | 21 man/dtweedie.Rd | 17 man/dtweedie.dldphi.Rd | 6 man/dtweedie.saddle.Rd | 8 man/logLik.tweedie.Rd |only man/tweedie-internal.Rd | 13 man/tweedie-package.Rd | 15 man/tweedie.convert.Rd |only man/tweedie.dev.Rd | 4 man/tweedie.plot.Rd | 8 man/tweedie.profile.Rd | 12 src/init.c |only src/tweedie.f | 31 20 files changed, 6683 insertions(+), 6452 deletions(-)
Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel, Khanh Nguyen (2009-2010), Terry Leitch (since 2016)
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.3 dated 2016-08-19 and 0.4.4 dated 2017-11-08
ChangeLog | 90 ++ DESCRIPTION | 14 MD5 | 63 - NAMESPACE | 6 R/RcppExports.R | 116 +-- R/option.R | 22 README.md | 28 configure | 24 configure.ac | 6 inst/NEWS.Rd | 23 inst/include/RQuantLib_RcppExports.h | 502 ++++++------- inst/include/rquantlib_impl.h | 5 inst/shiny/SabrSwaption/server.R | 6 inst/shiny/SabrSwaption/volDF2CubeK.R |only inst/unitTests/cpp/dates.cpp | 7 inst/unitTests/runit.options.R | 12 man/AmericanOption.Rd | 9 man/BermudanSwaption.Rd | 7 man/BondUtilities.Rd | 7 man/Enum.Rd | 2 man/EuropeanOption.Rd | 6 man/FittedBondCurve.Rd | 6 man/getQuantLibCapabilities.Rd | 7 man/getQuantLibVersion.Rd | 7 man/tsQuotes.Rd | 1 man/vcube.Rd | 1 src/Makevars.in | 4 src/RcppExports.cpp | 1289 +++++++++++++++++----------------- src/affine.cpp | 90 -- src/utils.cpp | 8 src/vanilla.cpp | 181 +++- tests/RQuantlib.R | 16 tests/RQuantlib.Rout.save | 30 33 files changed, 1454 insertions(+), 1141 deletions(-)
Title: Classes for 'GeoJSON'
Description: Classes for 'GeoJSON' to make working with 'GeoJSON' easier.
Includes S3 classes for 'GeoJSON' classes with brief summary output,
and a few methods such as extracting and adding bounding boxes,
properties, and coordinate reference systems; linting through
the 'geojsonlint' package; and serializing to/from 'Geobuf' binary
'GeoJSON' format.
Author: Scott Chamberlain [aut, cre],
Jeroen Ooms [aut]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between geojson versions 0.1.4 dated 2017-10-24 and 0.2.0 dated 2017-11-08
DESCRIPTION | 6 +- MD5 | 26 ++++++------ NAMESPACE | 1 NEWS.md | 19 ++++++++- R/as.geojson.R | 81 ++++++++++++++++++++++++++++++++++++++- R/multipoint.R | 6 ++ R/point.R | 3 + R/zzz.R | 4 + README.md | 4 + inst/doc/geojson-operations.html | 4 - inst/doc/geojson.html | 4 - man/multipoint.Rd | 3 + man/point.Rd | 3 + man/to_geojson.Rd |only tests/testthat/test-to_geojson.R |only 15 files changed, 141 insertions(+), 23 deletions(-)
Title: Latent Structure Learning
Description: Fits structural equation modeling via penalized likelihood.
Author: Po-Hsien Huang [aut, cre]
Maintainer: Po-Hsien Huang <psyphh@gmail.com>
Diff between lsl versions 0.5.5 dated 2016-07-26 and 0.5.6 dated 2017-11-08
DESCRIPTION | 13 MD5 | 12 R/lslSEM.R | 44 -- R/lslSEM_optimizer.R | 823 ++++++++++++++++++++++++++++++--------------------- R/lslSEM_tool.R | 18 - man/lsl.Rd | 1 man/lslSEM-class.Rd | 30 - 7 files changed, 535 insertions(+), 406 deletions(-)