Title: A Compilation of Different Estimation Methods for Gravity Models
Description: Gravity models are used to explain bilateral flows related to the sizes of bilateral partners, a measure of distance between them and other influences on interaction costs. The underlying idea is rather simple. The greater the masses of two bodies and the smaller the distance between them, the stronger their attraction. This concept is applied to several research topics such as trade, migration or foreign direct investment. Even though their basic idea is rather simple, gravity models can become complex regarding the choice of models or estimation methods. As especially for gravity beginners it is difficult to get an overview of the different methods and implement them in R, the package provides a wrapper of different standard estimation methods for gravity models. By considering the descriptions and codes of the estimation methods, users get a comprehensive and application-oriented overview of the different methods, see which method may be suitable for a certain research question or type of data and extend the code available to their research projects. The package contains two types of estimation methods: those estimating gravity models in their log-log form, such as Ordinary Least Squares (OLS), Fixed Effects, Double Demeaning (DDM), Bonus vetus OLS with simple averages (BVU) and with GDP-weights (BVW), Structural Iterated Least Squares (SILS) and Tetrads. These methods are partly complex to understand and program and thus a comparison of them is not straightforward, wherefore the package aims at easing an overview of the different methods combined with a direct application. A second type of estimation methods utilizes the gravity model in its multiplicative form with a log-link and different families of distributions. They are relatively easy to compute and added for completeness and contain the methods Poisson Pseudo Maximum Likelihood (PPML), Gamma Pseudo Maximum Likelihood (GPML), Negative Binomial Pseudo Maximum Likelihood (NBPML), and Nonlinear Least Squares (NLS). The functions all estimate gravity models, but they differ in whether they estimate them in their multiplicative or additive form, their requirements with respect to data, their handling of Multilateral Resistance terms as well as their possibilities concerning the inclusion of unilateral independent variables. Therefore, they normally lead to different estimation results. We refer the user to the Gravity Cookbook website (<https://sites.google.com/site/hiegravity/>) for more information on gravity models in general. Head, K. and Mayer, T. (2014) <DOI:10.1016/B978-0-444-54314-1.00003-3> provide a comprehensive and accessible overview of the theoretical and empirical development of the gravity literature as well as the use of gravity models and the various estimation methods, especially their merits and potential problems regarding applicability as well as different gravity datasets. In order to have a straightforward application of all methods, the package comes with an example dataset and examples utilizing this dataset are included in the descriptions of the methods. As the range of gravity models and their suitable estimation methods is huge and specific to data and research question at hand, the functions are kept simple such that researchers can utilize them as a starting point of their research and get familiar with them. On the Gravity Cookbook website (<https://sites.google.com/site/hiegravity/>) Keith Head and Thierry Mayer provide Stata code for most methods. Where possible, the functions are tested to lead the same results as the Stata code when choosing the option of robust variance estimation. However, compared to the Stata code available, the functions presented in this package provide users with more flexibility regarding the type of estimation (robust or not robust), the number and type of independent variables as well as the possible data. Furthermore, additional functions are added. The functions of the package include distance as an independent variable. If a panel model is used time-invariant effects, such as geographical distance, may have to be excluded, see the respective descriptions. Therefore, it is up to the user to ensure that the functions can be applied to panel data. Depending on the panel dataset and the variables - specifically the type of fixed effects - included in the model, it may easily occur that the model is not computable. Depending on the specific model, the code of the respective function may has to be changed in order to exclude the distance variable from the estimation. For a comprehensive overview of gravity models for panel data see Egger, P., & Pfaffermayr, M. (2003) <DOI:10.1007/s001810200146>, Gomez-Herrera, E. (2013) <DOI:10.1007/s00181-012-0576-2> and Head, K., Mayer, T., & Ries, J. (2010) <DOI:10.1016/j.jinteco.2010.01.002> as well as the references therein (see also the references included in the descriptions of the different functions). At the very least, the user should take special care with respect to the meaning of the estimated coefficients and variances as well as the decision about which effects to include in the estimation. As, to our knowledge at the moment, there is no explicit literature covering the estimation of a gravity equation by Double Demeaning, Structural Iterated Least Squares or Bonus vetus OLS using panel data, we do not recommend to apply these methods in this case. Contributions, extensions and error corrections are very welcome. Please do not hesitate to contact us.
Author: Anna-Lena Woelwer <woelwer@uni-trier.de>, Jan Pablo Burgard <burgardj@uni-trier.de>, Martin Bresslein <martin.bresslein@googlemail.com>
Maintainer: Anna-Lena Woelwer <woelwer@uni-trier.de>
Diff between gravity versions 0.3 dated 2017-01-31 and 0.5 dated 2017-11-14
DESCRIPTION | 19 +++++----- MD5 | 46 ++++++++++++++------------ NAMESPACE | 5 +- R/BVU.R | 9 ++--- R/BVW.R | 9 ++--- R/DDM.R | 11 +++--- R/Fixed_effects.R | 44 +++++++++++++------------ R/GPML.R |only R/Gravity_Data_Example.R | 6 ++- R/NBPML.R |only R/NLS.R |only R/OLS.R | 32 ++++++++++-------- R/PPML.R | 82 ++++++++++++++++++++++++----------------------- R/SILS.R | 9 ++--- R/Tetrads.R | 3 - man/BVU.Rd | 9 ++--- man/BVW.Rd | 9 ++--- man/DDM.Rd | 11 +++--- man/Fixed_Effects.Rd | 42 ++++++++++++------------ man/GPML.Rd |only man/Gravity.Rd | 7 ++-- man/NBPML.Rd |only man/NLS.Rd |only man/OLS.Rd | 30 +++++++++-------- man/PPML.Rd | 47 +++++++++++++++----------- man/SILS.Rd | 9 ++--- man/Tetrads.Rd | 3 - 27 files changed, 240 insertions(+), 202 deletions(-)
Title: Authenticate and Create Google APIs
Description: Create R functions that interact with OAuth2 Google APIs
<https://developers.google.com/apis-explorer/> easily,
with auto-refresh and Shiny compatibility.
Author: Mark Edmondson [aut, cre] (0000-0002-8434-3881),
Jennifer Bryan [ctb],
Johann deBoer [ctb],
Neal Richardson [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAuthR versions 0.6.1 dated 2017-11-12 and 0.6.2 dated 2017-11-14
DESCRIPTION | 9 MD5 | 55 +-- NAMESPACE | 1 NEWS.md | 6 R/auth.R | 3 R/batch.R | 36 -- R/checks.R | 2 R/generator.R | 6 R/memoise.R | 15 R/set_client.R |only build/vignette.rds |binary inst/doc/advanced-building.Rmd | 22 + inst/doc/advanced-building.html | 50 +- inst/doc/building.html | 112 +++--- inst/doc/google-authentication-types.Rmd | 59 +++ inst/doc/google-authentication-types.html | 86 +++- inst/doc/setup.html | 6 inst/doc/troubleshooting.Rmd | 1 inst/doc/troubleshooting.html | 7 man/gar_cache_setup.Rd | 3 man/gar_set_client.Rd |only tests/testthat/gdrive.oauth |only tests/testthat/googleAuthR_tests.httr-oauth |only tests/testthat/mock/85460cd6cee1de4a |only tests/testthat/test-integration.R | 93 ++++- tests/www.googleapis.com/discovery/v1/apis.json | 97 +++-- tests/www.googleapis.com/discovery/v1/apis/acceleratedmobilepageurl/v1/rest.json | 178 +++++----- tests/www.googleapis.com/urlshortener/v1/url-bd4cc3-POST.json | 2 vignettes/advanced-building.Rmd | 22 + vignettes/google-authentication-types.Rmd | 59 +++ vignettes/troubleshooting.Rmd | 1 31 files changed, 610 insertions(+), 321 deletions(-)
Title: Management and Exploratory Analysis of Spatial Data in Landscape
Genetics
Description: Management and exploratory analysis of spatial data in landscape genetics. Easy integration of information from multiple sources with "ecogen" objects.
Author: Leandro Roser [aut, cre],
Juan Vilardi [aut],
Beatriz Saidman [aut],
Laura Ferreyra [aut]
Maintainer: Leandro Roser <learoser@gmail.com>
Diff between EcoGenetics versions 1.2.1 dated 2017-03-03 and 1.2.1-1 dated 2017-11-14
DESCRIPTION | 22 - MD5 | 434 ++++++++++---------- NEWS | 10 R/ZZZ.R | 2 R/accesors.R | 4 R/auxiliar.R | 51 +- R/classes.R | 2 R/control.R | 3 R/eco.NDVI.R | 6 R/eco.NDVI.post.R | 15 R/eco.alfreq.R | 2 R/eco.association.R | 2 R/eco.bearing.R | 10 R/eco.cbind.R | 4 R/eco.clear.R | 2 R/eco.convert.R | 2 R/eco.cormantel.R | 4 R/eco.correlog.R | 24 - R/eco.detrend.R | 1 R/eco.forestplot.R | 6 R/eco.format.R | 2 R/eco.formula.R | 27 - R/eco.gsa.R | 16 R/eco.kin.loiselle.R | 1 R/eco.lagweight.R | 2 R/eco.lmtree.R | 2 R/eco.lsa.R | 2 R/eco.malecot.R | 61 +- R/eco.mantel.R | 45 +- R/eco.merge.R | 10 R/eco.pairtest.R | 6 R/eco.plotCorrelog.R | 63 +- R/eco.plotGlobal.R | 13 R/eco.plotLocal.R | 2 R/eco.plotWeight.R | 30 - R/eco.post.geneland.R | 8 R/eco.rankplot.R | 27 - R/eco.rasterplot.R | 46 +- R/eco.rbind.R | 6 R/eco.remove.R | 4 R/eco.slide.con.R | 4 R/eco.slide.matrix.R | 4 R/eco.split.R | 34 + R/eco.subset.R | 8 R/eco.theilsen.R | 115 ++--- R/eco.variogram.R | 9 R/eco.weight.R | 26 - R/ecogen.1OF6.definition.R | 1 R/ecogen.2OF6.constructor.R | 58 +- R/ecogen.3OF6.basic.methods.R | 13 R/ecogen.4OF6.brackets.R | 8 R/ecogen.5OF6.get&set.R | 1 R/ecogen.6OF6.converters.R | 19 R/miscellaneous.R | 8 R/plot.generic.R | 4 R/plot.methods.R | 10 R/roxygen.auxiliar.R | 20 R/show_summary.methods.R | 14 README.md | 5 man/EcoGenetics-accessors.Rd | 74 +-- man/EcoGenetics-package.Rd | 505 ------------------------ man/aue.access.Rd | 3 man/aue.ad2wg.Rd | 3 man/aue.circle.Rd | 3 man/aue.circle.w.Rd | 3 man/aue.dataAngle.Rd | 3 man/aue.df2image.Rd | 3 man/aue.ellipse.Rd | 3 man/aue.formatLine.Rd | 3 man/aue.fqal.Rd | 3 man/aue.genlab.Rd | 4 man/aue.geom.dist.Rd | 3 man/aue.image2df.Rd | 3 man/aue.is.poly.Rd | 1 man/aue.phenosimil.Rd | 3 man/aue.point.Rd | 3 man/aue.rescale.Rd | 3 man/aue.rm.nonpoly.Rd | 1 man/aue.rmspaces.Rd | 4 man/aue.rotate.Rd | 3 man/aue.seqlist.Rd | 3 man/aue.sort.Rd | 3 man/aue.square.Rd | 3 man/check_ecogen.Rd | 4 man/coordinates.Rd | 3 man/eco.IBD-class.Rd | 1 man/eco.IBD-methods.Rd | 1 man/eco.IBD.Rd | 1 man/eco.NDVI.Rd | 11 man/eco.NDVI.post.Rd | 20 man/eco.Rd | 3 man/eco.alfreq.Rd | 7 man/eco.association.Rd | 7 man/eco.autol-methods.Rd | 3 man/eco.bearing.Rd | 15 man/eco.cbind.Rd | 7 man/eco.clear.Rd | 3 man/eco.convert.Rd | 3 man/eco.cormantel.Rd | 9 man/eco.correlog-class.Rd | 4 man/eco.correlog-methods.Rd | 7 man/eco.correlog.Rd | 27 - 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man/spagedi2ecogen.Rd | 3 man/structure.Rd | 3 man/sub-sub-ecogen-numeric-missing-method.Rd | 4 man/sub-subset-ecogen-numeric-missing-method.Rd | 4 man/tab.Rd | 3 man/table.sokal.Rd | 3 218 files changed, 1193 insertions(+), 1723 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <http://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Neal Richardson [aut, cre],
Jonathan Keane [ctb],
Gordon Shotwell [ctb]
Maintainer: Neal Richardson <neal@crunch.io>
Diff between crunch versions 1.18.4 dated 2017-10-12 and 1.19.0 dated 2017-11-14
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| 1 crunch-1.19.0/crunch/inst/doc/getting-started.html | 276 --- crunch-1.19.0/crunch/inst/doc/variable-order.Rmd | 1 crunch-1.19.0/crunch/inst/doc/variable-order.html | 375 +--- crunch-1.19.0/crunch/inst/doc/variables.Rmd | 1 crunch-1.19.0/crunch/inst/doc/variables.html | 572 +----- crunch-1.19.0/crunch/man/CrunchDataFrame.Rd |only crunch-1.19.0/crunch/man/addGeoMetadata.Rd | 24 crunch-1.19.0/crunch/man/addSubvariable.Rd | 3 crunch-1.19.0/crunch/man/catalog-extract.Rd | 15 crunch-1.19.0/crunch/man/collapseCategories.Rd |only crunch-1.19.0/crunch/man/conditionalTransform.Rd |only crunch-1.19.0/crunch/man/crunch-cut.Rd |only crunch-1.19.0/crunch/man/crunchBox.Rd | 7 crunch-1.19.0/crunch/man/cube-methods.Rd | 19 crunch-1.19.0/crunch/man/dataset-to-R.Rd | 14 crunch-1.19.0/crunch/man/describe-category.Rd | 3 crunch-1.19.0/crunch/man/embedCrunchBox.Rd | 5 crunch-1.19.0/crunch/man/folder.Rd |only crunch-1.19.0/crunch/man/grabColNames.Rd |only crunch-1.19.0/crunch/man/grabRowInd.Rd |only 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crunch-1.19.0/crunch/tests/testthat/test-categories.R | 66 crunch-1.19.0/crunch/tests/testthat/test-combine-categories.R | 51 crunch-1.19.0/crunch/tests/testthat/test-conditional-transform.R |only crunch-1.19.0/crunch/tests/testthat/test-copy-variable.R | 3 crunch-1.19.0/crunch/tests/testthat/test-crunch-data-frame-merge.R |only crunch-1.19.0/crunch/tests/testthat/test-crunch-data-frame.R |only crunch-1.19.0/crunch/tests/testthat/test-cube-dims.R | 23 crunch-1.19.0/crunch/tests/testthat/test-cube-errors.R | 2 crunch-1.19.0/crunch/tests/testthat/test-cube-mr.R | 6 crunch-1.19.0/crunch/tests/testthat/test-cubes.R | 5 crunch-1.19.0/crunch/tests/testthat/test-dataset-reference.R | 1 crunch-1.19.0/crunch/tests/testthat/test-derive-array.R | 6 crunch-1.19.0/crunch/tests/testthat/test-derive-debug.R |only crunch-1.19.0/crunch/tests/testthat/test-derive.R | 21 crunch-1.19.0/crunch/tests/testthat/test-expressions.R | 20 crunch-1.19.0/crunch/tests/testthat/test-flip-array.R | 18 crunch-1.19.0/crunch/tests/testthat/test-folders.R |only crunch-1.19.0/crunch/tests/testthat/test-fork.R | 4 crunch-1.19.0/crunch/tests/testthat/test-formula.R | 16 crunch-1.19.0/crunch/tests/testthat/test-geo.R | 225 +- crunch-1.19.0/crunch/tests/testthat/test-multitables.R | 4 crunch-1.19.0/crunch/tests/testthat/test-teams.R | 15 crunch-1.19.0/crunch/tests/testthat/test-update-with-missing.R | 21 crunch-1.19.0/crunch/tests/testthat/test-variable-order.R | 21 crunch-1.19.0/crunch/vignettes/analyze.Rmd | 1 crunch-1.19.0/crunch/vignettes/array-variables.Rmd | 1 crunch-1.19.0/crunch/vignettes/crunch-internals.Rmd | 1 crunch-1.19.0/crunch/vignettes/datasets.Rmd | 7 crunch-1.19.0/crunch/vignettes/derive.Rmd | 1 crunch-1.19.0/crunch/vignettes/export.Rmd | 1 crunch-1.19.0/crunch/vignettes/filters.Rmd | 1 crunch-1.19.0/crunch/vignettes/getting-started.Rmd | 1 crunch-1.19.0/crunch/vignettes/variable-order.Rmd | 1 crunch-1.19.0/crunch/vignettes/variables.Rmd | 1 crunch-1.19.0/crunch/vignettes/vignettes.RData |binary 144 files changed, 2623 insertions(+), 4005 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-04 1.1
2017-06-13 1.0
Title: R/Weka Interface Jars
Description: External jars required for package 'RWeka'.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
University of Waikato [ctb, cph] (Weka Java library)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWekajars versions 3.9.1-4 dated 2017-10-14 and 3.9.1-5 dated 2017-11-14
RWekajars-3.9.1-4/RWekajars/R/onLoad.R |only RWekajars-3.9.1-5/RWekajars/DESCRIPTION | 11 ++++++----- RWekajars-3.9.1-5/RWekajars/MD5 | 6 +++--- RWekajars-3.9.1-5/RWekajars/R/init.R |only RWekajars-3.9.1-5/RWekajars/configure | 2 +- 5 files changed, 10 insertions(+), 9 deletions(-)
Title: R/Weka Interface
Description: An R interface to Weka (Version 3.9.1).
Weka is a collection of machine learning algorithms for data mining
tasks written in Java, containing tools for data pre-processing,
classification, regression, clustering, association rules, and
visualization. Package 'RWeka' contains the interface code, the
Weka jar is in a separate package 'RWekajars'. For more information
on Weka see <http://www.cs.waikato.ac.nz/ml/weka/>.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>),
Christian Buchta [ctb],
Torsten Hothorn [ctb],
Alexandros Karatzoglou [ctb],
David Meyer [ctb],
Achim Zeileis [ctb] (<https://orcid.org/0000-0003-0918-3766>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between RWeka versions 0.4-35 dated 2017-10-14 and 0.4-36 dated 2017-11-14
CHANGELOG | 6 ++++++ DESCRIPTION | 11 ++++++----- MD5 | 16 ++++++++-------- R/attributes.R | 5 +++++ configure | 2 +- inst/doc/RWeka.pdf |binary inst/po/en@quot/LC_MESSAGES/R-RWeka.mo |binary man/Weka_attribute_evaluators.Rd | 4 ++++ po/R-RWeka.pot | 7 +++++-- 9 files changed, 35 insertions(+), 16 deletions(-)
Title: Routines for L1 Estimation
Description: L1 estimation for linear regression, density, distribution function,
quantile function and random number generation for univariate and multivariate
Laplace distribution.
Author: Felipe Osorio [aut, cre], Tymoteusz Wolodzko [aut]
Maintainer: Felipe Osorio <felipe.osorios@usm.cl>
Diff between L1pack versions 0.38.1 dated 2017-08-15 and 0.38.19 dated 2017-11-14
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 4 +++- R/lad.R | 26 +++++++++++++++++++++++++- inst/CITATION | 4 ++-- 6 files changed, 43 insertions(+), 13 deletions(-)
Title: Easily Install and Load the 'Tidyverse'
Description: The 'tidyverse' is a set of packages that work in harmony
because they share common data representations and 'API' design. This
package is designed to make it easy to install and load multiple
'tidyverse' packages in a single step. Learn more about the 'tidyverse'
at <https://tidyverse.org>.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between tidyverse versions 1.2.0 dated 2017-11-07 and 1.2.1 dated 2017-11-14
DESCRIPTION | 20 ++-- MD5 | 12 +- NEWS.md | 10 +- R/conflicts.R | 2 R/tidyverse.R | 8 + R/utils.R | 11 +- inst/doc/manifesto.html | 206 +++++++++++++++++++++++++++++++++++++++++++++--- 7 files changed, 238 insertions(+), 31 deletions(-)
Title: Quantile Regression Forests
Description: Quantile Regression Forests is a tree-based ensemble
method for estimation of conditional quantiles. It is
particularly well suited for high-dimensional data. Predictor
variables of mixed classes can be handled. The package is
dependent on the package 'randomForest', written by Andy Liaw.
Author: Nicolai Meinshausen
Maintainer: Loris Michel <michel@stat.math.ethz.ch>
Diff between quantregForest versions 1.3-5 dated 2016-05-19 and 1.3-6 dated 2017-11-14
DESCRIPTION | 13 ++++++---- MD5 | 6 +++- R/quantregForest.R | 65 +++++++++++++++++++++++++++++++++++------------------ R/zzz.R |only src/init.c |only 5 files changed, 56 insertions(+), 28 deletions(-)
More information about quantregForest at CRAN
Permanent link
Title: Internet Memes for Data Analysts
Description: Generates internet memes that optionally include a superimposed inset plot and other atypical features,
combining the visual impact of an attention-grabbing meme with graphic results of data analysis.
The package differs from related packages that focus on imitating and reproducing standard memes.
Some packages do this by interfacing with online meme generators whereas others achieve this natively.
This package takes the latter approach. It does not interface with online meme generators or require any authentication with external websites.
It reads images directly from local files or via URL and meme generation is done by the package.
While this is similar to the 'meme' package available on CRAN, it differs in that the focus is on
allowing for non-standard meme layouts and hybrids of memes mixed with graphs.
While this package can be used to make basic memes like an online meme generator would produce,
it caters primarily to hybrid graph-meme plots where the meme presentation can be seen as a backdrop highlighting
foreground graphs of data analysis results.
The package also provides support for an arbitrary number of meme text labels with arbitrary size, position and other attributes
rather than restricting to the standard top and/or bottom text placement.
This is useful for proper aesthetic interleaving of plots of data between meme image backgrounds and overlain text labels.
The package offers a selection of templates for graph placement and appearance with respect to the underlying meme.
Graph templates also permit additional template-specific customization.
Author: Matthew Leonawicz [aut, cre]
Maintainer: Matthew Leonawicz <mfleonawicz@alaska.edu>
Diff between memery versions 0.3.0 dated 2017-11-09 and 0.3.1 dated 2017-11-14
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 15 +++++++++++++-- R/meme.R | 2 +- R/memery.R | 21 +++++++++++++++++++-- inst/doc/memery.R | 23 ++++++++++++++--------- inst/doc/memery.Rmd | 20 +++++++++++++------- inst/doc/memery.html | 13 ++++++------- man/meme.Rd | 2 +- man/memery.Rd | 22 ++++++++++++++++++++-- tests/testthat/test-meme.R | 43 ++++++++++++++++++++++++------------------- vignettes/memery.Rmd | 20 +++++++++++++------- 12 files changed, 139 insertions(+), 72 deletions(-)
Title: Retrieve 'U.S'. Flu Season Data from the 'CDC' 'FluView' Portal
Description: The 'U.S.' Centers for Disease Control ('CDC') maintains a portal
<http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html> for
accessing state, regional and national influenza statistics as well as
Mortality Surveillance Data. The web interface makes it difficult and
time-consuming to select and retrieve influenza data. Tools are provided
to access the data provided by the portal's underlying 'API'.
Author: Bob Rudis [aut, cre] (0000-0001-5670-2640),
Craig McGowan [ctb] (0000-0002-6298-0185)
Maintainer: Bob Rudis <bob@rud.is>
Diff between cdcfluview versions 0.5.1 dated 2016-12-07 and 0.7.0 dated 2017-11-14
cdcfluview-0.5.1/cdcfluview/R/aaa.r |only cdcfluview-0.5.1/cdcfluview/R/get_flu_data.r |only cdcfluview-0.5.1/cdcfluview/R/get_state_data.r |only cdcfluview-0.5.1/cdcfluview/R/get_weekly_flu_report.r |only cdcfluview-0.5.1/cdcfluview/R/mortalty.r |only cdcfluview-0.7.0/cdcfluview/DESCRIPTION | 39 ++-- cdcfluview-0.7.0/cdcfluview/MD5 | 62 +++++-- cdcfluview-0.7.0/cdcfluview/NAMESPACE | 32 +++ cdcfluview-0.7.0/cdcfluview/R/aaa.R |only cdcfluview-0.7.0/cdcfluview/R/agd-ipt.r |only cdcfluview-0.7.0/cdcfluview/R/cdcfluview-package.R | 20 +- cdcfluview-0.7.0/cdcfluview/R/coverage-map.r |only cdcfluview-0.7.0/cdcfluview/R/datasets.r | 2 cdcfluview-0.7.0/cdcfluview/R/geographic-spread.R |only cdcfluview-0.7.0/cdcfluview/R/get-flu-data.r |only cdcfluview-0.7.0/cdcfluview/R/get-hosp-data.r |only cdcfluview-0.7.0/cdcfluview/R/get-mortality-surveillance-data.r |only cdcfluview-0.7.0/cdcfluview/R/get-state-data.r |only cdcfluview-0.7.0/cdcfluview/R/get-weekly-flu-report.r |only cdcfluview-0.7.0/cdcfluview/R/hospital.r |only cdcfluview-0.7.0/cdcfluview/R/ili-weekly-state.r |only cdcfluview-0.7.0/cdcfluview/R/ilinet.r |only cdcfluview-0.7.0/cdcfluview/R/mmwr-map.r |only cdcfluview-0.7.0/cdcfluview/R/pi-mortality.r |only cdcfluview-0.7.0/cdcfluview/R/utils.r |only cdcfluview-0.7.0/cdcfluview/R/who-nrvess.r |only cdcfluview-0.7.0/cdcfluview/R/zzz.r | 12 - cdcfluview-0.7.0/cdcfluview/man/age_group_distribution.Rd |only cdcfluview-0.7.0/cdcfluview/man/cdc_basemap.Rd |only cdcfluview-0.7.0/cdcfluview/man/cdcfluview.Rd | 11 - cdcfluview-0.7.0/cdcfluview/man/census_regions.Rd | 1 cdcfluview-0.7.0/cdcfluview/man/geographic_spread.Rd |only cdcfluview-0.7.0/cdcfluview/man/get_flu_data.Rd | 12 - cdcfluview-0.7.0/cdcfluview/man/get_hosp_data.Rd |only cdcfluview-0.7.0/cdcfluview/man/get_mortality_surveillance_data.Rd | 5 cdcfluview-0.7.0/cdcfluview/man/get_state_data.Rd | 7 cdcfluview-0.7.0/cdcfluview/man/get_weekly_flu_report.Rd | 5 cdcfluview-0.7.0/cdcfluview/man/hhs_regions.Rd | 1 cdcfluview-0.7.0/cdcfluview/man/hospitalizations.Rd |only cdcfluview-0.7.0/cdcfluview/man/ili_weekly_activity_indicators.Rd |only cdcfluview-0.7.0/cdcfluview/man/ilinet.Rd |only cdcfluview-0.7.0/cdcfluview/man/mmwr_week.Rd |only cdcfluview-0.7.0/cdcfluview/man/mmwr_week_to_date.Rd |only cdcfluview-0.7.0/cdcfluview/man/mmwr_weekday.Rd |only cdcfluview-0.7.0/cdcfluview/man/mmwrid_map.Rd |only cdcfluview-0.7.0/cdcfluview/man/pi_mortality.Rd |only cdcfluview-0.7.0/cdcfluview/man/state_data_providers.Rd |only cdcfluview-0.7.0/cdcfluview/man/surveillance_areas.Rd |only cdcfluview-0.7.0/cdcfluview/man/who_nrevss.Rd |only cdcfluview-0.7.0/cdcfluview/tests/testthat/test-cdcfluview.R | 81 +++++++++- 50 files changed, 217 insertions(+), 73 deletions(-)
Title: Dynamic Models for Survival Data
Description: Functions fitting time-varying coefficient models for interval
censored and right censored survival data. Three major approaches are
implemented: 1) Bayesian Cox model with time-independent, time-varying or
dynamic coefficients for right censored and interval censored data; 2)
Spline based time-varying coefficient Cox model for right censored data; 3)
Transformation model with time-varying coefficients for right censored data
using estimating equations.
Author: Wenjie Wang [cre, aut],
Ming-Hui Chen [aut],
Xiaojing Wang [aut],
Jun Yan [aut]
Maintainer: Wenjie Wang <wenjie.2.wang@uconn.edu>
Diff between dynsurv versions 0.3-5 dated 2017-01-09 and 0.3-6 dated 2017-11-14
ChangeLog | 9 +++++++ DESCRIPTION | 17 +++++++------- MD5 | 47 +++++++++++++++++++++-------------------- NAMESPACE | 1 R/bayesCox.R | 57 ++++++++++++++++++++++++-------------------------- R/otherExports.R |only inst/CITATION | 4 +-- man/bayesCox.Rd | 1 man/bcos.Rd | 1 man/coef.bayesCox.Rd | 1 man/coef.splineCox.Rd | 1 man/coef.tvTran.Rd | 1 man/dynsurv.Rd | 1 man/jump.Rd | 3 +- man/nu.Rd | 2 - man/other-exports.Rd |only man/plotCoef.Rd | 1 man/plotJump.Rd | 3 -- man/plotNu.Rd | 1 man/plotSurv.Rd | 1 man/splineCox.Rd | 1 man/survCurve.Rd | 1 man/survDiff.Rd | 1 man/tooth.Rd | 1 man/tvTran.Rd | 1 src/dynsurv_init.c |only 26 files changed, 78 insertions(+), 79 deletions(-)
Title: Spatial Floor Simulation (Isotropic)
Description: Spatial floor simulation with exponential/Gaussian variance-covariance function (isotropic), with specification of distance function, nugget, sill, range. The methodology follows Nole A.C. Cressie (2015) <doi:10.1002/9781119115151>. The original release is 2017-08-29.
Author: Le Zheng <le.zheng@advantaseeds.com>, Martin Grondona <martin.grondona@advantaseeds.com>, Maria Arrieta <maria.arrieta@advantaseeds.com>
Maintainer: Le Zheng <le.zheng@advantaseeds.com>
Diff between SpatialFloor versions 1.0.1 dated 2017-08-30 and 1.0.2 dated 2017-11-14
DESCRIPTION | 12 ++++++------ MD5 | 21 +++++++++++++-------- NAMESPACE | 1 + R/check_layout_generation.R | 2 +- R/diagSet_check_by_density.R |only R/diag_pattern.R |only R/diagonal_check_by_density.R | 2 +- R/iso_simulation_by_heritabilitiy.R | 4 ++-- R/sysdata.rda |only man/check_layout_generation.Rd | 2 +- man/diagSet_check_by_density.Rd |only man/diag_extract.Rd |only man/diagonal_check_by_density.Rd | 2 +- man/iso_simulation_by_heriability.Rd | 4 ++-- 14 files changed, 28 insertions(+), 22 deletions(-)
Title: Spatial Inference using Integrated Nested Laplace Approximation
Description: Facilitates spatial modeling using integrated nested Laplace approximation via the
INLA package (<http://www.r-inla.org>). Additionally, implements a log Gaussian Cox process likelihood for
modeling univariate and spatial point processes based on ecological survey data. See Yuan Yuan,
Fabian E. Bachl, Finn Lindgren, David L. Borchers, Janine B. Illian, Stephen T. Buckland, Havard Rue,
Tim Gerrodette (2017), <arXiv:1604.06013>.
Author: Fabian E. Bachl <bachlfab@gmail.com> (main code),
Finn Lindgren <Finn.Lindgren@ed.ac.uk> (SPDE posterior plotting),
David L. Borchers <dlb@st-andrews.ac.uk> (Gorilla data import and sampling, multiplot tool),
Daniel Simpson <dp.simpson@gmail.com> (basic LGCP sampling method),
Lindesay Scott-Hayward <lass@@st-andrews.ac.uk> (MRSea data import)
Maintainer: Fabian E. Bachl <bachlfab@gmail.com>
Diff between inlabru versions 2.1.1 dated 2017-11-10 and 2.1.2 dated 2017-11-14
DESCRIPTION | 12 +++--- MD5 | 72 ++++++++++++++++++++--------------------- NAMESPACE | 1 R/bru.gof.R | 2 - R/bru.inference.R | 64 ++++++++++++++++++------------------ R/bru.integration.R | 16 ++++----- R/bru.spatial.R | 2 - R/covariate.R | 26 +++++++------- R/data.gorillas.R | 4 +- R/data.seals.R | 6 +-- R/data.toygroups.R | 2 - R/deltaIC.R | 2 - R/environment.R | 21 +++++++++++ R/ggplot.R | 10 +++-- R/inla.R | 26 +++++++------- R/inlabru.R | 1 R/integration.R | 16 ++++----- R/mesh.R | 10 ++--- R/model.R | 4 +- R/sampling.R | 12 +++--- R/spde.R | 10 ++--- R/stack.R | 2 - inst/examples/spde.posterior.R | 5 ++ man/bincount.Rd | 2 - man/bru.Rd | 4 +- man/bru.components.Rd | 4 +- man/bru.options.Rd | 12 +++--- man/deltaIC.Rd | 2 - man/gg.inla.mesh.1d.Rd | 4 ++ man/gg.inla.mesh.Rd | 2 - man/ipoints.Rd | 2 - man/like.Rd | 4 +- man/plot.bru.Rd | 2 - man/refine.inla.mesh.Rd | 2 - man/sample.lgcp.Rd | 4 +- man/spde.posterior.Rd | 5 ++ man/stransform.Rd | 2 - 37 files changed, 208 insertions(+), 169 deletions(-)
Title: Co-Operation: Fast Covariance, Correlation, and Cosine
Similarity Operations
Description: Fast implementations of the co-operations: covariance,
correlation, and cosine similarity. The implementations are
fast and memory-efficient and their use is resolved
automatically based on the input data, handled by R's S3
methods. Full descriptions of the algorithms and benchmarks
are available in the package vignettes.
Author: Drew Schmidt [aut, cre],
Christian Heckendorf [ctb] (Caught some memory errors.)
Maintainer: Drew Schmidt <wrathematics@gmail.com>
Diff between coop versions 0.6-0 dated 2016-12-12 and 0.6-1 dated 2017-11-14
coop-0.6-0/coop/src/experimental |only coop-0.6-0/coop/tests/run |only coop-0.6-1/coop/ChangeLog | 27 ++++--- coop-0.6-1/coop/DESCRIPTION | 6 - coop-0.6-1/coop/LICENSE | 2 coop-0.6-1/coop/MD5 | 86 ++++++++++++------------- coop-0.6-1/coop/NAMESPACE | 6 + coop-0.6-1/coop/R/cosine.r | 24 ++++++ coop-0.6-1/coop/R/covar.r | 24 ++++++ coop-0.6-1/coop/R/pcor.r | 24 ++++++ coop-0.6-1/coop/R/wrappers_dense.r | 17 ++++ coop-0.6-1/coop/README.md | 14 ++-- coop-0.6-1/coop/inst/doc/algos.Rnw | 2 coop-0.6-1/coop/inst/doc/algos.pdf |binary coop-0.6-1/coop/inst/doc/coop.Rnw | 2 coop-0.6-1/coop/inst/doc/coop.pdf |binary coop-0.6-1/coop/man/cosine.Rd | 2 coop-0.6-1/coop/man/covar.Rd | 2 coop-0.6-1/coop/man/pcor.Rd | 2 coop-0.6-1/coop/src/R_checks.c | 4 - coop-0.6-1/coop/src/R_naomit.c | 26 ++----- coop-0.6-1/coop/src/R_wrapper.c | 3 coop-0.6-1/coop/src/coop.h | 2 coop-0.6-1/coop/src/coop_native.c |only coop-0.6-1/coop/src/dense.c | 2 coop-0.6-1/coop/src/dense_inplace.c | 2 coop-0.6-1/coop/src/dense_pairwise.c | 2 coop-0.6-1/coop/src/scale.c | 8 +- coop-0.6-1/coop/src/sparse.c | 6 - coop-0.6-1/coop/src/utils/cdefs.h | 2 coop-0.6-1/coop/src/utils/copy.h | 2 coop-0.6-1/coop/src/utils/fill.h | 13 +-- coop-0.6-1/coop/src/utils/inverse.h | 4 - coop-0.6-1/coop/src/utils/lapack.h | 2 coop-0.6-1/coop/src/utils/mmult.h | 2 coop-0.6-1/coop/src/utils/scale.h | 14 ++-- coop-0.6-1/coop/src/utils/sparsity.h | 2 coop-0.6-1/coop/src/utils/special_vals.h | 2 coop-0.6-1/coop/src/utils/sumstats.h | 2 coop-0.6-1/coop/src/utils/xpose.h | 2 coop-0.6-1/coop/tests/naomit.R | 67 ++++++------------- coop-0.6-1/coop/vignettes/algos.Rnw | 2 coop-0.6-1/coop/vignettes/coop.Rnw | 2 coop-0.6-1/coop/vignettes/include/lastpage.sty |only coop-0.6-1/coop/vignettes/include/settings.tex | 4 - 45 files changed, 237 insertions(+), 180 deletions(-)
More information about likelihoodExplore at CRAN
Permanent link
Title: 'ggplot2' Based Publication Ready Plots
Description: 'ggplot2' is an excellent and flexible package for elegant data
visualization in R. However the default generated plots requires some formatting
before we can send them for publication. Furthermore, to customize a 'ggplot',
the syntax is opaque and this raises the level of difficulty for researchers
with no advanced R programming skills. 'ggpubr' provides some easy-to-use
functions for creating and customizing 'ggplot2'- based publication ready plots.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between ggpubr versions 0.1.5 dated 2017-08-22 and 0.1.6 dated 2017-11-14
DESCRIPTION | 28 +-- MD5 | 97 ++++++------- NAMESPACE | 5 NEWS.md | 43 +++++ R/compare_means.R | 27 ++- R/get_legend.R | 29 +++ R/ggarrange.R | 80 +++++++++- R/ggballoonplot.R |only R/ggbarplot.R | 17 ++ R/ggdotchart.R | 63 +++++++- R/ggline.R | 10 - R/ggpie.R | 103 +++++++++++++- R/ggscatterhist.R |only R/ggtexttable.R | 65 +++++++- R/ggviolin.R | 9 - R/show_point_shapes.R | 9 - R/stat_compare_means.R | 59 +++++--- R/theme_pubr.R | 40 ++++- R/theme_transparent.R | 9 - README.md | 4 inst/demo-data |only man/compare_means.Rd | 4 man/get_legend.Rd | 2 man/ggarrange.Rd | 23 +++ man/ggballoonplot.Rd |only man/ggbarplot.Rd | 6 man/ggdotchart.Rd | 26 +++ man/ggline.Rd | 6 man/ggpie.Rd | 6 man/ggscatterhist.Rd |only man/ggtexttable.Rd | 28 +++ man/ggviolin.Rd | 6 man/stat_chull.Rd | 32 ++-- man/stat_compare_means.Rd | 78 ++++++---- man/stat_conf_ellipse.Rd | 32 ++-- man/stat_cor.Rd | 30 ++-- man/stat_mean.Rd | 30 ++-- man/stat_stars.Rd | 30 ++-- man/theme_pubr.Rd | 19 +- tools/README-cleveland-dot-plots-1.png |binary tools/README-deviation-graphs-1.png |binary tools/README-deviation-graphs-horizontal-1.png |binary tools/README-ggpubr-1.png |binary tools/README-ggpubr-2.png |binary tools/README-ggpubr-box-plot-dot-plots-strip-charts-1.png |binary tools/README-ggpubr-box-plot-dot-plots-strip-charts-2.png |binary tools/README-ggpubr-box-plot-dot-plots-strip-charts-3.png |binary tools/README-lollipop-chart-1.png |binary tools/README-lollipop-chart-deviation-1.png |binary tools/README-lollipop-chart-rotate-1.png |binary tools/README-ordered-bar-plots-1.png |binary tools/README-ordered-bar-plots-by-groups-1.png |binary 52 files changed, 795 insertions(+), 260 deletions(-)
Title: A Bunch of Structure and Sequence Analysis
Description: Reads and plots phylogenetic placements obtained using the 'pplacer' and 'guppy' softwares <https://matsen.github.io/pplacer/>.
Author: Pierre Lefeuvre
Maintainer: Pierre Lefeuvre <pierre.lefeuvre@cirad.fr>
Diff between BoSSA versions 2.1 dated 2017-05-09 and 2.2 dated 2017-11-14
DESCRIPTION | 12 +- MD5 | 46 ++++--- NAMESPACE | 4 R/plot.pplace.R | 15 ++ R/pplace_to_matrix.R | 31 ++++- R/pplace_to_taxonomy.R | 21 ++- R/print.jplace.R |only R/print.pplace.R | 2 R/read_jplace.R | 30 ++++- R/read_sqlite.R | 2 R/refpkg.R | 254 +++++++++++++++++++++++-------------------- build/partial.rdb |binary inst/doc/bossa-analysis.Rmd | 8 - inst/doc/bossa-analysis.html | 42 +++---- inst/doc/bossa-refpkg.R | 10 + inst/doc/bossa-refpkg.Rmd | 34 +++++ inst/doc/bossa-refpkg.html | 58 ++++++--- man/plot.pplace.Rd | 22 ++- man/pplace_to_matrix.Rd | 8 - man/pplace_to_taxonomy.Rd | 12 -- man/print.pplace.Rd | 8 - man/read_jplace.Rd |only man/refpkg.Rd | 21 +++ vignettes/bossa-analysis.Rmd | 8 - vignettes/bossa-refpkg.Rmd | 34 +++++ 25 files changed, 439 insertions(+), 243 deletions(-)
More information about BootValidation at CRAN
Permanent link
Title: Miscellaneous Basic Functions
Description: A collection of miscellaneous functions for
copying objects to the clipboard ('Copy');
manipulating strings ('concat', 'mgsub', 'trim', 'verlan');
loading or showing packages ('library_with_dep', 'require_with_dep',
'sessionPackages');
creating or testing for named lists ('nlist', 'as.nlist', 'is.nlist'),
formulas ('is.formula'), empty objects ('as.empty', 'is.empty'),
whole numbers ('as.wholenumber', 'is.wholenumber');
testing for equality ('almost.equal', 'almost.zero') and computing
uniqueness ('almost.unique');
getting modified versions of usual functions ('rle2', 'sumNA');
making a pause or a stop ('pause', 'stopif');
converting into a function ('as.fun');
providing a C like ternary operator ('condition %?% true %:% false');
finding packages and functions ('get_all_pkgs', 'get_all_funs');
and others ('erase', '%nin%', 'unwhich', 'top', 'bot', 'normlize').
Author: Paul Poncet [aut, cre]
Maintainer: Paul Poncet <paulponcet@yahoo.fr>
Diff between bazar versions 0.1.6 dated 2017-06-25 and 1.0.6 dated 2017-11-14
DESCRIPTION | 16 ++++++++----- MD5 | 34 +++++++++++++++++++++-------- NAMESPACE | 22 +++++++++++++++++++ NEWS.md | 54 +++++++++++++++++++++++++++++++++++++++++++++++ R/almost.unique.R |only R/as.fun.R |only R/erase.R | 3 +- R/get_all_funs.R |only R/get_all_pkgs.R |only R/is.wholenumber.R | 7 ++++-- R/normalize.R |only R/rollfun.R |only R/sessionPackages.R | 12 ++++++---- R/stopif.R | 3 +- R/ternary_operator.R |only R/top_bot.R |only R/verlan.R | 4 ++- man/almost.unique.Rd |only man/as.fun.Rd |only man/get_all_funs.Rd |only man/get_all_pkgs.Rd |only man/is.wholenumber.Rd | 3 +- man/normalize.Rd |only man/rollfun.Rd |only man/ternary_operation.Rd |only man/top.Rd |only 26 files changed, 133 insertions(+), 25 deletions(-)
Title: Import, Manipulate and Explore the Results of an Antares
Simulation
Description: Import, manipulate and explore results generated by Antares, a
powerful software developed by RTE to simulate and study electric power systems
(more information about Antares here: <https://antares.rte-france.com>).
Author: Jalal-Edine ZAWAM [aut, cre],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
RTE [cph]
Maintainer: Jalal-Edine ZAWAM <jalal-edine.zawam@rte-france.com>
Diff between antaresRead versions 2.0.0 dated 2017-11-06 and 2.0.1 dated 2017-11-14
DESCRIPTION | 8 - MD5 | 26 ++--- NEWS | 4 R/h5_antaresReadH5.R | 9 + R/importOutput.R | 4 R/readAntares.R | 8 + R/readLayout.R | 2 inst/doc/antares.html | 4 inst/doc/antaresH5.html | 4 tests/testthat/helper_init.R | 186 +++++++++++++++++++------------------- tests/testthat/test-h5_write.R | 27 ++++- tests/testthat/test-readLayout.R | 6 + tests/testthat/test-setup.R | 60 ++++++------ tests/testthat/test-viewAntares.R | 56 +++++------ 14 files changed, 225 insertions(+), 179 deletions(-)
Title: Functions for Epidemiological Analysis using Population Data
Description: Enables computation of epidemiological statistics where e.g.
counts or mortality rates of the reference population are used. Currently
supported: excess hazard models, rates, mean survival times, relative
survival, as well as standardized incidence and mortality ratios (SIRs/SMRs),
all of which can be easily adjusted for e.g. age.
Fast splitting and aggregation of 'Lexis' objects (from package 'Epi')
and other computations achieved using 'data.table'.
Author: Joonas Miettinen [aut, cre],
Matti Rantanen [aut],
Karri Seppa [ctb]
Maintainer: Joonas Miettinen <joonas.miettinen@cancer.fi>
Diff between popEpi versions 0.4.3 dated 2017-09-05 and 0.4.4 dated 2017-11-14
DESCRIPTION | 8 MD5 | 261 - NAMESPACE | 176 NEWS.md | 267 - R/S3_definitions.R | 2946 ++++++++-------- R/aggregating.R | 1232 +++--- R/data_document.R | 348 - R/direct_adjusting.R | 314 - R/evaluation.R | 1878 +++++----- R/flexyargs.R | 332 - R/fractional_years.R | 300 - R/incidence_rates.R | 686 +-- R/incidence_rates_utils.R | 266 - R/lexpand.R | 1873 +++++----- R/lexpand2.R | 278 - R/lifetime_function.R | 564 +-- R/ltable.R | 502 +- R/mean_survival.R | 1326 +++---- R/popEpi_package.r | 60 R/pophaz.R | 136 R/prevalence.R | 282 - R/relative_poisson.R | 1217 +++--- R/relative_poisson_net_survival.R | 352 - R/sir.R | 2893 +++++++-------- R/sir_utils.R | 226 - R/splitLexisDT.R | 543 +- R/splitMulti.R | 504 +- R/splitting_utility_functions.R | 2514 +++++++------ R/startup_message.R | 60 R/survival_aggregated.R | 1780 ++++----- R/survival_lexis.R | 1184 +++--- R/survival_utility_functions.R | 1273 +++--- R/utility_functions.R | 2830 +++++++-------- R/weighted_table.R | 1328 +++---- README.md | 378 +- build/vignette.rds |binary inst/doc/sir.R | 128 inst/doc/sir.Rmd | 319 - inst/doc/sir.html | 598 +-- inst/doc/survtab_examples.R | 340 - inst/doc/survtab_examples.Rmd | 592 +-- inst/doc/survtab_examples.html | 820 ++-- man/ICSS.Rd | 72 man/Lexis_fpa.Rd | 164 man/RPL.Rd | 42 man/adjust.Rd | 48 man/aggre.Rd | 370 +- man/all_names_present.Rd | 62 man/as.Date.yrs.Rd | 84 man/as.aggre.Rd | 152 man/as.data.frame.ratetable.Rd | 66 man/as.data.table.ratetable.Rd | 68 man/cast_simple.Rd | 100 man/cut_bound.Rd | 56 man/direct_standardization.Rd | 308 - man/fac2num.Rd | 74 man/flexible_argument.Rd | 334 - man/get.yrs.Rd | 156 man/is.Date.Rd | 82 man/is_leap_year.Rd | 56 man/lexpand.Rd | 736 +-- man/lines.sirspline.Rd | 84 man/lines.survmean.Rd | 70 man/lines.survtab.Rd | 120 man/longDF2ratetable.Rd | 60 man/lower_bound.Rd | 36 man/ltable.Rd | 290 - man/makeWeightsDT.Rd | 306 - man/meanpop_fi.Rd | 58 man/na2zero.Rd | 54 man/plot.rate.Rd | 66 man/plot.sir.Rd | 140 man/plot.sirspline.Rd | 92 man/plot.survmean.Rd | 76 man/plot.survtab.Rd | 126 man/poisson.ci.Rd | 52 man/popEpi.Rd | 68 man/pophaz.Rd | 114 man/popmort.Rd | 56 man/prepExpo.Rd | 210 - man/print.aggre.Rd | 54 man/print.rate.Rd | 48 man/print.survtab.Rd | 66 man/rate.Rd | 208 - man/rate_ratio.Rd | 140 man/relpois.Rd | 234 - man/relpois_ag.Rd | 188 - man/robust_values.Rd | 90 man/rpcurve.Rd | 142 man/setaggre.Rd | 104 man/setclass.Rd | 54 man/setcolsnull.Rd | 64 man/sibr.Rd | 76 man/sir.Rd | 388 +- man/sir_exp.Rd | 204 - man/sir_ratio.Rd | 162 man/sire.Rd | 74 man/sirspline.Rd | 282 - man/splitLexisDT.Rd | 176 man/splitMulti.Rd | 264 - man/stdpop101.Rd | 54 man/stdpop18.Rd | 58 man/summary.aggre.Rd | 64 man/summary.survtab.Rd | 188 - man/survmean.Rd | 560 +-- man/survtab.Rd | 616 +-- man/survtab_ag.Rd | 782 ++-- man/try2int.Rd | 54 tests/testthat.R | 8 tests/testthat/test_aggre.R | 458 +- tests/testthat/test_epi.R | 68 tests/testthat/test_expo.R | 94 tests/testthat/test_lexpand.R | 750 ++-- tests/testthat/test_prevtab.R | 40 tests/testthat/test_rate.R | 624 +-- tests/testthat/test_relpois_mean_curve.R | 136 tests/testthat/test_sir.R | 882 ++-- tests/testthat/test_splitLexisDT.R | 249 - tests/testthat/test_splitMulti.R | 241 - tests/testthat/test_splitting_attributes.R |only tests/testthat/test_splitting_breaks.R | 160 tests/testthat/test_splitting_randomly.R |only tests/testthat/test_splitting_randomly_on_random_data.R |only tests/testthat/test_survmean.R | 606 +-- tests/testthat/test_survtab_adjusted.R | 152 tests/testthat/test_survtab_bad_surv_ints.R | 190 - tests/testthat/test_survtab_observed.R | 266 - tests/testthat/test_survtab_relative.R | 396 +- tests/testthat/test_survtab_usage.R | 960 ++--- tests/testthat/test_utils.R | 834 ++-- tests/testthat/test_weighter.R | 278 - vignettes/sir.Rmd | 319 - vignettes/survtab_examples.Rmd | 592 +-- 133 files changed, 26630 insertions(+), 26089 deletions(-)
Title: A Toolbox for Systemic Risk
Description: A toolbox for systemic risk based on liabilities matrices. Contains
a Gibbs sampler for liabilities matrices where only row and column sums of the
liabilities matrix as well as some other fixed entries are observed. Includes models
for power law distribution on the degree distribution.
Author: Axel Gandy and Luitgard A.M. Veraart
Maintainer: Axel Gandy <a.gandy@imperial.ac.uk>
Diff between systemicrisk versions 0.4 dated 2017-01-08 and 0.4.1 dated 2017-11-14
DESCRIPTION | 8 +++--- MD5 | 21 ++++++++++------ R/HierarchicalModels.R | 9 +++++-- R/lib_ErdosRenyExponential_MCMC.R | 2 - build/vignette.rds |binary inst/CITATION | 13 ++++++++-- inst/NEWS.Rd | 8 ++++++ inst/doc/HierarchicalModels.html | 47 ++++++++++++++++++++++---------------- inst/doc/Introduction.html | 6 ++-- inst/doc/NonSquare.R |only inst/doc/NonSquare.Rmd |only inst/doc/NonSquare.html |only src/init.c |only vignettes/NonSquare.Rmd |only 14 files changed, 74 insertions(+), 40 deletions(-)
Title: An Interactive Application for ODE Parameter Inference Using
Gradient Matching
Description: An interactive Shiny application to perform fast parameter inference on
dynamical systems (described by ordinary differential equations) using gradient matching.
Please see the project page for more details.
Author: Joe Wandy
Maintainer: Joe Wandy <joe.wandy@glasgow.ac.uk>
Diff between shinyKGode versions 1.0.0 dated 2017-11-13 and 1.0.1 dated 2017-11-14
DESCRIPTION | 19 +++++++++---------- MD5 | 5 +++-- README.md | 2 +- man/shinyKGode.Rd |only 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Compare Two Data Frames and Summarise the Difference
Description: Easy comparison of two tabular data
objects in R. Specifically designed to show differences between two sets of
data in a useful way that should make it easier to understand the differences,
and if necessary, help you work out how to remedy them. Aims
to offer a more useful output than all.equal() when your two data sets do not
match, but isn't intended to replace all.equal() as a way to test for equality.
Author: Rob Noble-Eddy [aut, cre],
Sarah Johnston [aut],
Sarah Pollicott [aut],
Merlijn van Horssen [aut],
Lukas Drapal [ctb],
Nikolaos Perrakis [ctb],
Nikhil Thomas Joy [ctb],
Shahriar Asta [ctb],
Karandeep Lidher [ctb],
Dan Kellett [ctb],
Kevin Chisholm [ctb],
Laura Joy [ctb],
Fergus Wadsley [ctb],
Heather Hackett [ctb],
David Robinson [ctb],
Cheryl Renton [ctb],
Matt Triggs [ctb],
Krishan Bhasin [ctb],
Carola Deppe [ctb]
Maintainer: Rob Noble-Eddy <opensource@capitalone.com>
Diff between dataCompareR versions 0.1.0 dated 2017-07-17 and 0.1.1 dated 2017-11-14
DESCRIPTION | 10 LICENSE | 14 MD5 | 222 +++---- NAMESPACE | 2 R/cd_compareData.R | 82 +- R/cd_createMismatchObject.R | 222 +++---- R/cd_locateMismatches.R | 387 ++++++------ R/out_createReportText.R | 50 - R/out_generateMismatchData.R | 230 +++---- R/out_helperFunctions.R | 70 +- R/out_outputStructureFunctions.R | 148 ++-- R/out_printrcompareobject.R | 290 ++++----- R/out_printsummaryrcompareobject.R | 50 - R/out_rCompObjectQueryFunctions.R | 126 ++-- R/out_saveReport.R | 226 +++---- R/out_summaryrcompareobject.R | 588 +++++++++---------- R/out_unifiedOutputGenerator.R | 452 +++++++------- R/pd_coerceFactorsToChar.R | 52 - R/pd_executeCoercions.R | 116 +-- R/pd_matchColumns.R | 204 +++--- R/pd_matchRows.R | 370 ++++++------ R/pd_prepareData.R | 96 +-- R/pd_trimCharVars.R | 52 - R/pf_createCompareObject.R | 48 - R/pf_processFlow.R | 132 ++-- R/rc_coerceData.R | 148 ++-- R/rc_isRCompareObject.R | 42 - R/rc_rCompare.R | 205 +++--- R/rc_rounddf.R | 48 - R/rc_validateArguments.R | 246 ++++---- R/rco_createCleaningInfo.R | 82 +- R/rco_createColMatching.R | 94 +-- R/rco_createMeta.R | 82 +- R/rco_createMismatches.R | 62 +- R/rco_createRowMatching.R | 172 ++--- R/rco_currentObjVersion.R | 38 - R/rco_updateCompareObject.R | 44 - R/rco_updateCompareObject_CleaningInfo.R | 42 - R/rco_updateCompareObject_ColMatching.R | 60 - R/rco_updateCompareObject_Matches.R | 42 - R/rco_updateCompareObject_Meta.R | 112 +-- R/rco_updateCompareObject_Mismatches.R | 42 - R/rco_updateCompareObject_RowMatching.R | 62 +- R/vd_checkColumnNames.R | 52 - R/vd_checkEmpty.R | 70 +- R/vd_checkKeysExists.R | 68 +- R/vd_validateData.R | 74 +- R/zzz.R | 48 - build/vignette.rds |binary inst/css/table.css | 106 +-- inst/doc/dataCompareR.R | 4 inst/doc/dataCompareR.Rmd | 322 +++++----- inst/doc/dataCompareR.html | 64 -- man/compareData.Rd | 2 man/executeCoercions.Rd | 4 man/locateMismatches.Rd | 2 man/prepareData.Rd | 4 man/print.dataCompareRobject.Rd | 4 man/processFlow.Rd | 2 man/rCompare.Rd | 6 man/saveReport.Rd | 4 man/validateArguments.Rd | 4 tests/performanceTesting/colSizeTests.R | 204 +++--- tests/performanceTesting/keyNoKeyTests.R | 94 +-- tests/performanceTesting/largeDataSetCreator.R | 268 ++++---- tests/performanceTesting/profiling.R | 84 +- tests/performanceTesting/rowSizeTests.R | 262 ++++---- tests/testthat.R | 38 - tests/testthat/createTitanicDatasets.R | 214 +++---- tests/testthat/createTwoKeyData.R | 284 ++++----- tests/testthat/testCheckEmpty.R | 86 +- tests/testthat/testCheckKeysExist.R | 136 ++-- tests/testthat/testCheckPrintObject.R | 394 ++++++------ tests/testthat/testCheckSummaryObject.R | 336 +++++------ tests/testthat/testCheckUniqueness.R | 74 +- tests/testthat/testCheckisRCompareObject.R | 86 +- tests/testthat/testCoerceData.R | 156 ++--- tests/testthat/testCoerceFactorsToChar.R | 124 ++-- tests/testthat/testCoercion.R | 192 +++--- tests/testthat/testCompareDifferentDFs.R | 74 +- tests/testthat/testCreateCompareObject.R | 114 +-- tests/testthat/testCreateMismatchData.R | 380 ++++++------ tests/testthat/testCreateMismatchObject.R | 206 +++--- tests/testthat/testEndToEndBit64.R | 104 +-- tests/testthat/testEndToEndDates.R | 202 +++--- tests/testthat/testEndToEndFourKeys.R | 382 ++++++------ tests/testthat/testEndToEndMismatchParam.R | 92 +-- tests/testthat/testEndToEndOrderedFactors.R | 86 +- tests/testthat/testEndToEndTimes.R | 90 +- tests/testthat/testEndToEndTitanic.R | 728 ++++++++++++------------ tests/testthat/testEndToEndTwoKeys.R | 346 +++++------ tests/testthat/testLocateMismatches.R | 220 +++---- tests/testthat/testMakeValidNames.R | 358 +++++------ tests/testthat/testMatchColumns.R | 184 +++--- tests/testthat/testMatchMultiIndex.R | 190 +++--- tests/testthat/testMatchNoIndex.R | 150 ++-- tests/testthat/testMatchRows.R | 336 +++++------ tests/testthat/testMatchSingleIndex.R | 104 +-- tests/testthat/testPrintSummaryRcompareObject.R | 368 ++++++------ tests/testthat/testRCompareStructure.R | 122 ++-- tests/testthat/testRounddf.R | 102 +-- tests/testthat/testSaveReport.R | 136 ++-- tests/testthat/testTrimCharVars.R | 70 +- tests/testthat/testValidateArguments.R | 276 ++++----- tests/testthat/testValidation.R | 162 ++--- tests/testthat/test_outHelperFunctions.R | 80 +- tests/testthat/testcreateReportText.R | 344 +++++------ tests/testthat/testing.Rmd | 6 tests/testthat/testing.html | 6 tests/testthat/testing.md | 6 tests/testthat/testrCompObjectQueryFunctions.R | 58 - vignettes/dataCompareR.Rmd | 322 +++++----- 112 files changed, 8048 insertions(+), 8090 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-08 1.1.0
2017-09-14 1.0.2
2017-07-08 1.0.1
2017-03-16 1.0.0
2017-02-28 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-13 1.0