Title: Circle Packing
Description: Simple algorithms for circle packing.
Author: Michael Bedward [aut, cre],
David Eppstein [aut] (Author of Python code for graph-based circle
packing ported to C++ for this package),
Peter Menzel [aut] (Author of C code for progressive circle packing
ported to C++ for this package)
Maintainer: Michael Bedward <michael.bedward@gmail.com>
Diff between packcircles versions 0.2.0 dated 2017-04-06 and 0.3.0 dated 2017-11-23
packcircles-0.2.0/packcircles/src/packcircles_init.c |only packcircles-0.3.0/packcircles/DESCRIPTION | 10 packcircles-0.3.0/packcircles/LICENSE | 2 packcircles-0.3.0/packcircles/MD5 | 77 - packcircles-0.3.0/packcircles/NAMESPACE | 25 packcircles-0.3.0/packcircles/NEWS.md | 69 - packcircles-0.3.0/packcircles/R/RcppExports.R | 34 packcircles-0.3.0/packcircles/R/circleGraphLayout.R | 116 +- packcircles-0.3.0/packcircles/R/circleProgressiveLayout.R | 166 +-- packcircles-0.3.0/packcircles/R/circleRemoveOverlaps.R |only packcircles-0.3.0/packcircles/R/circleRepelLayout.R | 524 +++++----- packcircles-0.3.0/packcircles/R/circleVertices.R | 322 +++--- packcircles-0.3.0/packcircles/R/data.R | 26 packcircles-0.3.0/packcircles/R/packcircles.R | 42 packcircles-0.3.0/packcircles/README.md | 99 + packcircles-0.3.0/packcircles/build/vignette.rds |binary packcircles-0.3.0/packcircles/inst/doc/graph_packing.R | 80 - packcircles-0.3.0/packcircles/inst/doc/graph_packing.Rmd | 124 +- packcircles-0.3.0/packcircles/inst/doc/graph_packing.html | 268 ++--- packcircles-0.3.0/packcircles/inst/doc/intro.R | 254 ++-- packcircles-0.3.0/packcircles/inst/doc/intro.Rmd | 420 ++++---- packcircles-0.3.0/packcircles/inst/doc/intro.html | 474 ++++----- packcircles-0.3.0/packcircles/inst/doc/progressive_packing.R | 290 ++--- packcircles-0.3.0/packcircles/inst/doc/progressive_packing.Rmd | 436 ++++---- packcircles-0.3.0/packcircles/inst/doc/progressive_packing.html | 489 ++++----- packcircles-0.3.0/packcircles/man/bacteria.Rd | 38 packcircles-0.3.0/packcircles/man/circleGraphLayout.Rd | 132 +- packcircles-0.3.0/packcircles/man/circleLayout.Rd | 104 - packcircles-0.3.0/packcircles/man/circleLayoutVertices.Rd | 154 +- packcircles-0.3.0/packcircles/man/circlePlotData.Rd | 64 - packcircles-0.3.0/packcircles/man/circleProgressiveLayout.Rd | 110 +- packcircles-0.3.0/packcircles/man/circleRemoveOverlaps.Rd |only packcircles-0.3.0/packcircles/man/circleRepelLayout.Rd | 148 +- packcircles-0.3.0/packcircles/man/circleVertices.Rd | 58 - packcircles-0.3.0/packcircles/man/packcircles.Rd | 40 packcircles-0.3.0/packcircles/src/RcppExports.cpp | 19 packcircles-0.3.0/packcircles/src/init.c |only packcircles-0.3.0/packcircles/src/pads_circle_pack.cpp | 6 packcircles-0.3.0/packcircles/src/select_non_overlapping.cpp |only packcircles-0.3.0/packcircles/vignettes/graph_packing.Rmd | 124 +- packcircles-0.3.0/packcircles/vignettes/intro.Rmd | 420 ++++---- packcircles-0.3.0/packcircles/vignettes/progressive_packing.Rmd | 436 ++++---- 42 files changed, 3120 insertions(+), 3080 deletions(-)
Title: Generalized Farlie-Gumbel-Morgenstern Copula
Description: Compute bivariate dependence measures and perform bivariate competing risks analysis under the generalized Farlie-Gumbel-Morgenstern (FGM) copula. See Shih and Emura (2016) <doi:10.1007/s00362-016-0865-5> and Shih and Emura (2017, in re-submission) for details.
Author: Jia-Han Shih
Maintainer: Jia-Han Shih <tommy355097@gmail.com>
Diff between GFGM.copula versions 1.0.0 dated 2017-10-27 and 1.0.1 dated 2017-11-23
DESCRIPTION | 10 - MD5 | 28 +- NAMESPACE | 8 R/CvM.GFGM.BurrIII.R |only R/Depmeasure.GFGM.R | 12 - R/GFGM.BurrIII.R |only R/MLE.GFGM.BurrIII.R | 443 +++++++++++++++++++++------------------------- R/MLE.GFGM.spline.R |only R/Sdist.GFGM.BurrIII.R | 64 +++--- R/Sdist.GFGM.spline.R | 193 ++++---------------- build/partial.rdb |binary man/CvM.GFGM.BurrIII.Rd |only man/Dependence.GFGM.Rd | 10 - man/GFGM.BurrIII.Rd |only man/MLE.GFGM.BurrIII.Rd | 40 +--- man/MLE.GFGM.spline.Rd |only man/Sdist.GFGM.BurrIII.Rd | 25 +- man/Sdist.GFGM.spline.Rd | 57 +---- 18 files changed, 368 insertions(+), 522 deletions(-)
Title: Tools for Designing and Weighting Survey Samples
Description: Contains functions for sample size calculation for survey samples using stratified or clustered one-, two-, and three-stage sample designs. Other functions compute variance components for multistage designs and sample sizes in two-phase designs. A number of example data sets are included.
Author: Richard Valliant, Jill A. Dever, Frauke Kreuter
Maintainer: Richard Valliant <rvallian@umd.edu>
Diff between PracTools versions 0.6 dated 2017-07-26 and 0.7 dated 2017-11-23
DESCRIPTION | 8 ++++---- MD5 | 28 +++++++++++++++------------- R/wtdvar.R | 8 ++++++-- data/Domainy1y2.RData |binary data/MDarea.pop.RData |binary data/datalist | 1 + data/hospital.RData |binary data/labor.RData |binary data/mibrfss.RData |only data/nhis.RData |binary data/nhis.large.RData |binary data/nhispart.RData |binary data/smho.N874.RData |binary data/smho98.RData |binary man/mibrfss.Rd |only man/wtdvar.Rd | 7 ++++--- 16 files changed, 30 insertions(+), 22 deletions(-)
Title: Supplementary Item Response Theory Models
Description: Supplementary item response theory models to complement existing
functions in R, including multidimensional compensatory and
noncompensatory IRT models, MCMC for hierarchical IRT models and
testlet models, NOHARM, Rasch copula model, faceted and
hierarchical rater models, ordinal IRT model (ISOP),
DETECT statistic, local structural equation modeling (LSEM).
Author: Alexander Robitzsch [aut,cre]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between sirt versions 2.2-14 dated 2017-09-20 and 2.3-57 dated 2017-11-23
sirt-2.2-14/sirt/R/rm.facets_IC.R |only sirt-2.2-14/sirt/R/rm.hrm.calcprobs.R |only sirt-2.2-14/sirt/R/rm.hrm.est.tau.item.R |only sirt-2.2-14/sirt/R/rm.sdt_alg.R |only sirt-2.2-14/sirt/R/rm.smooth.distribution.R |only sirt-2.2-14/sirt/R/rm_proc.R |only sirt-2.3-57/sirt/DESCRIPTION | 14 sirt-2.3-57/sirt/MD5 | 1143 +++++----- sirt-2.3-57/sirt/NAMESPACE | 6 sirt-2.3-57/sirt/R/IRT.expectedCounts_sirt.R | 1 sirt-2.3-57/sirt/R/IRT.factor.scores.sirt.R | 1 sirt-2.3-57/sirt/R/IRT.factor.scores.xxirt.R | 1 sirt-2.3-57/sirt/R/IRT.irfprob.sirt.R | 1 sirt-2.3-57/sirt/R/IRT.likelihood_sirt.R | 1 sirt-2.3-57/sirt/R/IRT.mle.R | 1 sirt-2.3-57/sirt/R/IRT.modelfit.sirt.R | 1 sirt-2.3-57/sirt/R/IRT.posterior_sirt.R | 1 sirt-2.3-57/sirt/R/Probtrace_sirt.R | 1 sirt-2.3-57/sirt/R/Q3.R | 6 sirt-2.3-57/sirt/R/Q3.testlet.R | 1 sirt-2.3-57/sirt/R/R2conquest.R | 1 sirt-2.3-57/sirt/R/R2noharm-utility.R | 1 sirt-2.3-57/sirt/R/R2noharm.EAP.R | 1 sirt-2.3-57/sirt/R/R2noharm.R | 1 sirt-2.3-57/sirt/R/R2noharm.jackknife.R | 1 sirt-2.3-57/sirt/R/RcppExports.R | 1 sirt-2.3-57/sirt/R/Rhat_sirt.R | 1 sirt-2.3-57/sirt/R/amh_plot.R | 1 sirt-2.3-57/sirt/R/anova_sirt.R | 1 sirt-2.3-57/sirt/R/attach.environment.sirt.R | 1 sirt-2.3-57/sirt/R/automatic.recode.R | 1 sirt-2.3-57/sirt/R/bounds_parameters.R | 1 sirt-2.3-57/sirt/R/brm.irf.R | 1 sirt-2.3-57/sirt/R/brm.sim.R | 1 sirt-2.3-57/sirt/R/btm.R | 1 sirt-2.3-57/sirt/R/btm_fit.R | 1 sirt-2.3-57/sirt/R/btm_fit_combine_tables.R | 1 sirt-2.3-57/sirt/R/categorize.R | 1 sirt-2.3-57/sirt/R/ccov.np.R | 1 sirt-2.3-57/sirt/R/class.accuracy.rasch.R | 1 sirt-2.3-57/sirt/R/conf.detect.R | 1 sirt-2.3-57/sirt/R/confint.xxirt.R | 1 sirt-2.3-57/sirt/R/create.ccov.R | 1 sirt-2.3-57/sirt/R/data.prep.R | 1 sirt-2.3-57/sirt/R/data.wide2long.R | 1 sirt-2.3-57/sirt/R/decategorize.R | 1 sirt-2.3-57/sirt/R/detect.index.R | 1 sirt-2.3-57/sirt/R/diag2.R | 1 sirt-2.3-57/sirt/R/dif.logisticregression.R | 1 sirt-2.3-57/sirt/R/dif.variance.R | 1 sirt-2.3-57/sirt/R/dimproper.R | 1 sirt-2.3-57/sirt/R/dirichlet.R | 1 sirt-2.3-57/sirt/R/eigenvalues.manymatrices.R | 1 sirt-2.3-57/sirt/R/eigenvalues.sirt.R | 1 sirt-2.3-57/sirt/R/equating.rasch.R | 1 sirt-2.3-57/sirt/R/expl.detect.R | 1 sirt-2.3-57/sirt/R/f1d.irt.R | 1 sirt-2.3-57/sirt/R/fit.adisop.R | 1 sirt-2.3-57/sirt/R/fit.gradedresponse.R | 1 sirt-2.3-57/sirt/R/fit.gradedresponse_alg.R | 1 sirt-2.3-57/sirt/R/fit.isop.R | 1 sirt-2.3-57/sirt/R/fit.logistic.R | 1 sirt-2.3-57/sirt/R/fit.logistic_alg.R | 1 sirt-2.3-57/sirt/R/fuzcluster.R | 1 sirt-2.3-57/sirt/R/fuzcluster_alg.R | 1 sirt-2.3-57/sirt/R/fuzdiscr.R | 1 sirt-2.3-57/sirt/R/ginverse_sym.R | 1 sirt-2.3-57/sirt/R/gom.em.R | 1 sirt-2.3-57/sirt/R/gom.em.alg.R | 1 sirt-2.3-57/sirt/R/gom.jml.R | 1 sirt-2.3-57/sirt/R/gom.jml_alg.R | 1 sirt-2.3-57/sirt/R/greenyang.reliability.R | 1 sirt-2.3-57/sirt/R/hard_thresholding.R | 1 sirt-2.3-57/sirt/R/invariance.alignment.R | 1 sirt-2.3-57/sirt/R/invariance.alignment.aux.R | 1 sirt-2.3-57/sirt/R/invariance.alignment2.R | 1 sirt-2.3-57/sirt/R/invariance.alignment2.aux.R | 1 sirt-2.3-57/sirt/R/invgamma2.R | 1 sirt-2.3-57/sirt/R/isop.dich.R | 1 sirt-2.3-57/sirt/R/isop.poly.R | 1 sirt-2.3-57/sirt/R/isop.scoring.R | 1 sirt-2.3-57/sirt/R/isop.test.R | 1 sirt-2.3-57/sirt/R/isop_tests_cpp.R | 1 sirt-2.3-57/sirt/R/latent.regression.em.normal.R | 1 sirt-2.3-57/sirt/R/latent.regression.em.raschtype.R | 1 sirt-2.3-57/sirt/R/lavaan2mirt.R | 1 sirt-2.3-57/sirt/R/lavaanify.sirt.R | 1 sirt-2.3-57/sirt/R/lc.2raters.R | 1 sirt-2.3-57/sirt/R/lc.2raters.aux.R | 1 sirt-2.3-57/sirt/R/likelihood_adjustment.R | 1 sirt-2.3-57/sirt/R/likelihood_adjustment_aux.R | 1 sirt-2.3-57/sirt/R/likelihood_moments.R | 1 sirt-2.3-57/sirt/R/linking.haberman.R | 1 sirt-2.3-57/sirt/R/linking.robust.R | 1 sirt-2.3-57/sirt/R/linking_haberman_als.R | 1 sirt-2.3-57/sirt/R/linking_haberman_als_residual_weights.R | 1 sirt-2.3-57/sirt/R/linking_haberman_als_vcov.R | 1 sirt-2.3-57/sirt/R/linking_haberman_vcov_transformation.R | 1 sirt-2.3-57/sirt/R/logLik_sirt.R | 1 sirt-2.3-57/sirt/R/lsdm.R | 1 sirt-2.3-57/sirt/R/lsdm_aux.R | 1 sirt-2.3-57/sirt/R/lsem.MGM.stepfunctions.R | 1 sirt-2.3-57/sirt/R/lsem.estimate.R | 1 sirt-2.3-57/sirt/R/lsem.permutationTest.R | 1 sirt-2.3-57/sirt/R/lsem_fitsem.R | 1 sirt-2.3-57/sirt/R/lsem_group_moderator.R | 1 sirt-2.3-57/sirt/R/lsem_parameter_summary.R | 1 sirt-2.3-57/sirt/R/lsem_residualize.R | 1 sirt-2.3-57/sirt/R/lsem_weighted_cov.R | 1 sirt-2.3-57/sirt/R/lsem_weighted_mean.R | 1 sirt-2.3-57/sirt/R/lsem_wtdSD.R | 1 sirt-2.3-57/sirt/R/marginal.truescore.reliability.R | 1 sirt-2.3-57/sirt/R/matrix_functions.R | 1 sirt-2.3-57/sirt/R/matrixfunctions_sirt.R | 1 sirt-2.3-57/sirt/R/mcmc.2pno.R | 1 sirt-2.3-57/sirt/R/mcmc.2pno.ml.R | 1 sirt-2.3-57/sirt/R/mcmc.2pno.ml_alg.R | 1 sirt-2.3-57/sirt/R/mcmc.2pno.ml_output.R | 1 sirt-2.3-57/sirt/R/mcmc.2pno_alg.R | 1 sirt-2.3-57/sirt/R/mcmc.2pnoh.R | 1 sirt-2.3-57/sirt/R/mcmc.2pnoh_alg.R | 1 sirt-2.3-57/sirt/R/mcmc.3pno.testlet.R | 1 sirt-2.3-57/sirt/R/mcmc.3pno.testlet_alg.R | 1 sirt-2.3-57/sirt/R/mcmc.3pno.testlet_output.R | 1 sirt-2.3-57/sirt/R/mcmc.aux.R | 1 sirt-2.3-57/sirt/R/mcmc.list.descriptives.R | 1 sirt-2.3-57/sirt/R/mcmc_3pno_testlet_draw_itempars.R | 1 sirt-2.3-57/sirt/R/mcmc_Rhat.R | 1 sirt-2.3-57/sirt/R/mcmc_WaldTest.R | 1 sirt-2.3-57/sirt/R/mcmc_coef.R | 1 sirt-2.3-57/sirt/R/mcmc_confint.R | 1 sirt-2.3-57/sirt/R/mcmc_derivedPars.R | 1 sirt-2.3-57/sirt/R/mcmc_plot.R | 1 sirt-2.3-57/sirt/R/mcmc_summary.R | 1 sirt-2.3-57/sirt/R/mcmc_summary_print_information_criteria.R | 1 sirt-2.3-57/sirt/R/mcmc_vcov.R | 1 sirt-2.3-57/sirt/R/mcmclist2coda.R | 1 sirt-2.3-57/sirt/R/md.pattern.sirt.R | 1 sirt-2.3-57/sirt/R/mirt.IRT.functions.R | 1 sirt-2.3-57/sirt/R/mirt.model.vars.R | 1 sirt-2.3-57/sirt/R/mirt.specify.partable.R | 1 sirt-2.3-57/sirt/R/mirt.wrapper.calc.counts.R | 1 sirt-2.3-57/sirt/R/mirt.wrapper.coef.R | 1 sirt-2.3-57/sirt/R/mirt.wrapper.fscores.R | 1 sirt-2.3-57/sirt/R/mirt.wrapper.itemplot.R | 1 sirt-2.3-57/sirt/R/mirt.wrapper.posterior.R | 1 sirt-2.3-57/sirt/R/mirt_prodterms.R | 1 sirt-2.3-57/sirt/R/mle.pcm.group.R | 1 sirt-2.3-57/sirt/R/mle.reliability.R | 1 sirt-2.3-57/sirt/R/modelfit.cor.R | 133 - sirt-2.3-57/sirt/R/modelfit.cor.poly.R | 1 sirt-2.3-57/sirt/R/modelfit.sirt.R |only sirt-2.3-57/sirt/R/monoreg.rowwise.R | 1 sirt-2.3-57/sirt/R/nedelsky.irf.R | 1 sirt-2.3-57/sirt/R/nedelsky.latresp.R | 1 sirt-2.3-57/sirt/R/nedelsky.sim.R | 1 sirt-2.3-57/sirt/R/noharm.sirt.R | 1 sirt-2.3-57/sirt/R/noharm.sirt.est.aux.R | 1 sirt-2.3-57/sirt/R/noharm.sirt.preprocess.R | 1 sirt-2.3-57/sirt/R/normal2.cw.R | 1 sirt-2.3-57/sirt/R/np.dich.R | 1 sirt-2.3-57/sirt/R/nr.numdiff.R | 1 sirt-2.3-57/sirt/R/package_version_date.R | 1 sirt-2.3-57/sirt/R/parmsummary_extend.R | 1 sirt-2.3-57/sirt/R/pbivnorm2.R | 1 sirt-2.3-57/sirt/R/pcm.conversion.R | 1 sirt-2.3-57/sirt/R/pcm.fit.R | 1 sirt-2.3-57/sirt/R/personfit.R | 1 sirt-2.3-57/sirt/R/personfit.stat.R | 1 sirt-2.3-57/sirt/R/pgenlogis.R | 1 sirt-2.3-57/sirt/R/plausible.values.raschtype.R | 1 sirt-2.3-57/sirt/R/plot.invariance.alignment.R | 1 sirt-2.3-57/sirt/R/plot.isop.R | 1 sirt-2.3-57/sirt/R/plot.lsem.R | 1 sirt-2.3-57/sirt/R/plot.lsem.permutationTest.R | 1 sirt-2.3-57/sirt/R/plot.mcmc.sirt.R | 1 sirt-2.3-57/sirt/R/plot.rasch.mml.R | 1 sirt-2.3-57/sirt/R/plot.rm.sdt.R | 1 sirt-2.3-57/sirt/R/polychoric2.R | 1 sirt-2.3-57/sirt/R/pow.R | 1 sirt-2.3-57/sirt/R/print.xxirt.R | 1 sirt-2.3-57/sirt/R/prior_extract_density.R | 1 sirt-2.3-57/sirt/R/prior_model_pars_CleanString.R | 1 sirt-2.3-57/sirt/R/prior_model_parse.R | 1 sirt-2.3-57/sirt/R/prmse.subscores.R | 7 sirt-2.3-57/sirt/R/prob.guttman.R | 1 sirt-2.3-57/sirt/R/prob_genlogis_4pl.R | 1 sirt-2.3-57/sirt/R/qmc.nodes.R | 1 sirt-2.3-57/sirt/R/rasch.conquest.R | 1 sirt-2.3-57/sirt/R/rasch.copula.R | 1 sirt-2.3-57/sirt/R/rasch.copula2.R | 1 sirt-2.3-57/sirt/R/rasch.copula2_aux.R | 1 sirt-2.3-57/sirt/R/rasch.copula3.R | 1 sirt-2.3-57/sirt/R/rasch.copula3.covariance.R | 1 sirt-2.3-57/sirt/R/rasch.copula3_aux.R | 1 sirt-2.3-57/sirt/R/rasch.evm.pcm.R | 1 sirt-2.3-57/sirt/R/rasch.evm.pcm.methods.R | 1 sirt-2.3-57/sirt/R/rasch.evm.pcm_aux.R | 1 sirt-2.3-57/sirt/R/rasch.jml.R | 1 sirt-2.3-57/sirt/R/rasch.jml.biascorr.R | 1 sirt-2.3-57/sirt/R/rasch.mirtlc.R | 1 sirt-2.3-57/sirt/R/rasch.mirtlc_aux.R | 1 sirt-2.3-57/sirt/R/rasch.mml.R | 1 sirt-2.3-57/sirt/R/rasch.mml.npirt.R | 1 sirt-2.3-57/sirt/R/rasch.mml.ramsay.R | 1 sirt-2.3-57/sirt/R/rasch.mml.raschtype.R | 1 sirt-2.3-57/sirt/R/rasch.mml2.R | 6 sirt-2.3-57/sirt/R/rasch.mml2.missing1.R | 1 sirt-2.3-57/sirt/R/rasch.pairwise.R | 1 sirt-2.3-57/sirt/R/rasch.pairwise.itemcluster.R | 1 sirt-2.3-57/sirt/R/rasch.pml.R | 1 sirt-2.3-57/sirt/R/rasch.pml2.R | 1 sirt-2.3-57/sirt/R/rasch.pml2_aux.R | 1 sirt-2.3-57/sirt/R/rasch.pml3.R | 1 sirt-2.3-57/sirt/R/rasch.pml3_aux.R | 1 sirt-2.3-57/sirt/R/rasch.pml_aux.R | 1 sirt-2.3-57/sirt/R/rasch.prox.R | 1 sirt-2.3-57/sirt/R/rasch.va.R | 1 sirt-2.3-57/sirt/R/rasch_mml2_calc_prob.R | 1 sirt-2.3-57/sirt/R/rasch_mml2_difference_quotient.R | 1 sirt-2.3-57/sirt/R/rasch_mml2_modify_list_element.R | 1 sirt-2.3-57/sirt/R/rasch_mml2_mstep_calc_likelihood.R | 1 sirt-2.3-57/sirt/R/read.fwf2.R | 1 sirt-2.3-57/sirt/R/reliability.nonlinear.sem.R | 1 sirt-2.3-57/sirt/R/rm.facets.R | 366 +-- sirt-2.3-57/sirt/R/rm.facets_PP.R | 1 sirt-2.3-57/sirt/R/rm.facets_alg.R | 348 --- sirt-2.3-57/sirt/R/rm.sdt.R | 430 +-- sirt-2.3-57/sirt/R/rm_calclike.R |only sirt-2.3-57/sirt/R/rm_center_vector.R |only sirt-2.3-57/sirt/R/rm_determine_fixed_tau_parameters.R |only sirt-2.3-57/sirt/R/rm_eap_reliability.R |only sirt-2.3-57/sirt/R/rm_facets_calc_loglikelihood.R |only sirt-2.3-57/sirt/R/rm_facets_calcprobs.R |only sirt-2.3-57/sirt/R/rm_facets_center_value.R |only sirt-2.3-57/sirt/R/rm_facets_center_value_aggregate.R |only sirt-2.3-57/sirt/R/rm_facets_est_a_item.R |only sirt-2.3-57/sirt/R/rm_facets_est_a_rater.R |only sirt-2.3-57/sirt/R/rm_facets_est_b_rater.R |only sirt-2.3-57/sirt/R/rm_facets_est_tau_item.R |only sirt-2.3-57/sirt/R/rm_facets_ic.R |only sirt-2.3-57/sirt/R/rm_facets_itempar_expanded.R |only sirt-2.3-57/sirt/R/rm_facets_pem_acceleration.R |only sirt-2.3-57/sirt/R/rm_facets_pem_inits.R |only sirt-2.3-57/sirt/R/rm_facets_postproc_person.R |only sirt-2.3-57/sirt/R/rm_facets_postproc_rater_parameters.R |only sirt-2.3-57/sirt/R/rm_facets_print_progress.R |only sirt-2.3-57/sirt/R/rm_facets_print_progress_deviance.R |only sirt-2.3-57/sirt/R/rm_facets_print_progress_parameter.R |only sirt-2.3-57/sirt/R/rm_facets_print_progress_trait_distribution.R |only sirt-2.3-57/sirt/R/rm_facets_string_part_extract.R |only sirt-2.3-57/sirt/R/rm_grouped_expected_likelihood.R |only sirt-2.3-57/sirt/R/rm_hrm_calcprobs.R |only sirt-2.3-57/sirt/R/rm_hrm_est_a_item.R |only sirt-2.3-57/sirt/R/rm_hrm_est_c_rater.R |only sirt-2.3-57/sirt/R/rm_hrm_est_c_rater_order_parameters.R |only sirt-2.3-57/sirt/R/rm_hrm_est_d_rater.R |only sirt-2.3-57/sirt/R/rm_hrm_est_tau_item.R |only sirt-2.3-57/sirt/R/rm_ic_criteria.R |only sirt-2.3-57/sirt/R/rm_numdiff_discrete_differences.R |only sirt-2.3-57/sirt/R/rm_numdiff_index.R |only sirt-2.3-57/sirt/R/rm_numdiff_trim_increment.R |only sirt-2.3-57/sirt/R/rm_posterior.R |only sirt-2.3-57/sirt/R/rm_proc_create_pseudoraters.R |only sirt-2.3-57/sirt/R/rm_proc_data.R |only sirt-2.3-57/sirt/R/rm_proc_fixed_values_reference_rater.R |only sirt-2.3-57/sirt/R/rm_sdt_arraymult1.R |only sirt-2.3-57/sirt/R/rm_sdt_calc_loglikelihood.R |only sirt-2.3-57/sirt/R/rm_sdt_pem_acceleration.R |only sirt-2.3-57/sirt/R/rm_sdt_pem_inits.R |only sirt-2.3-57/sirt/R/rm_sdt_prepare_diffindex.R |only sirt-2.3-57/sirt/R/rm_sdt_print_progress.R |only sirt-2.3-57/sirt/R/rm_sdt_probraterfct1.R |only sirt-2.3-57/sirt/R/rm_smooth_distribution.R |only sirt-2.3-57/sirt/R/rm_squeeze.R |only sirt-2.3-57/sirt/R/rm_summary_information_criteria.R |only sirt-2.3-57/sirt/R/rm_summary_information_criteria_print_one_criterium.R |only sirt-2.3-57/sirt/R/rm_summary_trait_distribution.R |only sirt-2.3-57/sirt/R/rm_trim_increments_mstep.R |only sirt-2.3-57/sirt/R/sia.sirt.R | 1 sirt-2.3-57/sirt/R/sim.rasch.dep.R | 1 sirt-2.3-57/sirt/R/sim.raschtype.R | 1 sirt-2.3-57/sirt/R/sirt_antifisherz.R | 1 sirt-2.3-57/sirt/R/sirt_attach_list_elements.R |only sirt-2.3-57/sirt/R/sirt_colMaxs.R |only sirt-2.3-57/sirt/R/sirt_csink.R | 1 sirt-2.3-57/sirt/R/sirt_dnorm_discrete.R |only sirt-2.3-57/sirt/R/sirt_fisherz.R | 1 sirt-2.3-57/sirt/R/sirt_matrix2.R | 1 sirt-2.3-57/sirt/R/sirt_osink.R | 1 sirt-2.3-57/sirt/R/sirt_pem_adjust_dimension.R |only sirt-2.3-57/sirt/R/sirt_pem_algorithm_compute_Pnew.R |only sirt-2.3-57/sirt/R/sirt_pem_algorithm_compute_t.R |only sirt-2.3-57/sirt/R/sirt_pem_collect_parameters.R |only sirt-2.3-57/sirt/R/sirt_pem_create_parameter_index.R |only sirt-2.3-57/sirt/R/sirt_pem_extract_dimension.R |only sirt-2.3-57/sirt/R/sirt_pem_extract_parameters.R |only sirt-2.3-57/sirt/R/sirt_pem_include_ll_args.R |only sirt-2.3-57/sirt/R/sirt_pem_parameter_sequence_initial_iterations.R |only sirt-2.3-57/sirt/R/sirt_rbind_fill.R | 1 sirt-2.3-57/sirt/R/sirt_rmvnorm.R | 1 sirt-2.3-57/sirt/R/sirt_round_vector.R | 1 sirt-2.3-57/sirt/R/sirt_summary_print_call.R | 1 sirt-2.3-57/sirt/R/sirt_summary_print_computation_time.R | 1 sirt-2.3-57/sirt/R/sirt_summary_print_computation_time_s1.R |only sirt-2.3-57/sirt/R/sirt_summary_print_objects.R | 1 sirt-2.3-57/sirt/R/sirt_summary_print_package.R | 1 sirt-2.3-57/sirt/R/sirt_summary_print_package_rsession.R | 1 sirt-2.3-57/sirt/R/sirt_summary_print_packages.R | 1 sirt-2.3-57/sirt/R/sirt_summary_print_rsession.R |only sirt-2.3-57/sirt/R/sirt_vector_with_names.R | 1 sirt-2.3-57/sirt/R/sirtcat.R | 1 sirt-2.3-57/sirt/R/smirt.R | 1 sirt-2.3-57/sirt/R/smirt_alg_comp.R | 1 sirt-2.3-57/sirt/R/smirt_alg_noncomp.R | 1 sirt-2.3-57/sirt/R/smirt_alg_partcomp.R | 1 sirt-2.3-57/sirt/R/smirt_postproc.R | 1 sirt-2.3-57/sirt/R/smirt_preproc.R | 1 sirt-2.3-57/sirt/R/smirt_squeeze.R | 1 sirt-2.3-57/sirt/R/soft_thresholding.R | 1 sirt-2.3-57/sirt/R/stratified.cronbach.alpha.R | 1 sirt-2.3-57/sirt/R/sum0.R | 1 sirt-2.3-57/sirt/R/summary.R2noharm.R | 1 sirt-2.3-57/sirt/R/summary.R2noharm.jackknife.R | 1 sirt-2.3-57/sirt/R/summary.btm.R | 1 sirt-2.3-57/sirt/R/summary.conf.detect.R | 1 sirt-2.3-57/sirt/R/summary.fuzcluster.R | 1 sirt-2.3-57/sirt/R/summary.gom.em.R | 1 sirt-2.3-57/sirt/R/summary.invariance.alignment.R | 1 sirt-2.3-57/sirt/R/summary.isop.R | 1 sirt-2.3-57/sirt/R/summary.isop.test.R | 1 sirt-2.3-57/sirt/R/summary.latent.regression.R | 1 sirt-2.3-57/sirt/R/summary.linking.haberman.R | 1 sirt-2.3-57/sirt/R/summary.lsem.R | 42 sirt-2.3-57/sirt/R/summary.lsem.permutationTest.R | 1 sirt-2.3-57/sirt/R/summary.mcmc.sirt.R | 5 sirt-2.3-57/sirt/R/summary.modelfit.sirt.R |only sirt-2.3-57/sirt/R/summary.noharm.sirt.R | 1 sirt-2.3-57/sirt/R/summary.rasch.copula.R | 1 sirt-2.3-57/sirt/R/summary.rasch.evm.pcm.R | 1 sirt-2.3-57/sirt/R/summary.rasch.mirtlc.R | 1 sirt-2.3-57/sirt/R/summary.rasch.mml2.R | 1 sirt-2.3-57/sirt/R/summary.rasch.pml.R | 1 sirt-2.3-57/sirt/R/summary.rm.facets.R | 76 sirt-2.3-57/sirt/R/summary.rm.sdt.R | 79 sirt-2.3-57/sirt/R/summary.smirt.R | 1 sirt-2.3-57/sirt/R/summary.xxirt.R | 42 sirt-2.3-57/sirt/R/summary_round_helper.R | 1 sirt-2.3-57/sirt/R/tam2mirt.R | 1 sirt-2.3-57/sirt/R/tam2mirt.aux.R | 1 sirt-2.3-57/sirt/R/testlet.marginalized.R | 1 sirt-2.3-57/sirt/R/testlet.yen.q3.R | 1 sirt-2.3-57/sirt/R/tetrachoric2.R | 1 sirt-2.3-57/sirt/R/tracemat.R | 1 sirt-2.3-57/sirt/R/truescore.irt.R | 1 sirt-2.3-57/sirt/R/unidim.csn.R | 1 sirt-2.3-57/sirt/R/weighted_colMeans.R | 6 sirt-2.3-57/sirt/R/weighted_colSums.R | 6 sirt-2.3-57/sirt/R/weighted_rowMeans.R | 6 sirt-2.3-57/sirt/R/weighted_rowSums.R | 6 sirt-2.3-57/sirt/R/weighted_stats_extend_wgt.R | 1 sirt-2.3-57/sirt/R/wle.rasch.R | 197 - sirt-2.3-57/sirt/R/wle.rasch.jackknife.R |only sirt-2.3-57/sirt/R/write.format2.R | 1 sirt-2.3-57/sirt/R/write.fwf2.R | 1 sirt-2.3-57/sirt/R/xxirt.R | 15 sirt-2.3-57/sirt/R/xxirt_EAP.R | 1 sirt-2.3-57/sirt/R/xxirt_IRT.se.R | 1 sirt-2.3-57/sirt/R/xxirt_ThetaDistribution_extract_freeParameters.R | 1 sirt-2.3-57/sirt/R/xxirt_coef.R | 1 sirt-2.3-57/sirt/R/xxirt_compute_itemprobs.R | 1 sirt-2.3-57/sirt/R/xxirt_compute_likelihood.R | 1 sirt-2.3-57/sirt/R/xxirt_compute_posterior.R | 1 sirt-2.3-57/sirt/R/xxirt_compute_priorDistribution.R | 1 sirt-2.3-57/sirt/R/xxirt_createDiscItem.R | 1 sirt-2.3-57/sirt/R/xxirt_createItemList.R | 1 sirt-2.3-57/sirt/R/xxirt_createParTable.R | 1 sirt-2.3-57/sirt/R/xxirt_createThetaDistribution.R | 1 sirt-2.3-57/sirt/R/xxirt_data_proc.R | 1 sirt-2.3-57/sirt/R/xxirt_hessian.R | 1 sirt-2.3-57/sirt/R/xxirt_ic.R | 1 sirt-2.3-57/sirt/R/xxirt_modifyParTable.R | 1 sirt-2.3-57/sirt/R/xxirt_mstep_ThetaParameters.R | 1 sirt-2.3-57/sirt/R/xxirt_mstep_itemParameters.R | 1 sirt-2.3-57/sirt/R/xxirt_mstep_itemParameters_evalPrior.R | 1 sirt-2.3-57/sirt/R/xxirt_parTheta_extract_freeParameters.R | 1 sirt-2.3-57/sirt/R/xxirt_partable_extract_freeParameters.R | 1 sirt-2.3-57/sirt/R/xxirt_partable_include_freeParameters.R | 1 sirt-2.3-57/sirt/R/xxirt_postproc_parameters.R | 1 sirt-2.3-57/sirt/R/xxirt_prepare_response_data.R | 4 sirt-2.3-57/sirt/R/xxirt_proc_ParTable.R | 1 sirt-2.3-57/sirt/R/xxirt_vcov.R | 1 sirt-2.3-57/sirt/R/yen.q3.R | 1 sirt-2.3-57/sirt/R/zzz.R | 1 sirt-2.3-57/sirt/README.md | 6 sirt-2.3-57/sirt/data/data.activity.itempars.rda |binary sirt-2.3-57/sirt/data/data.befki.rda |only sirt-2.3-57/sirt/data/data.befki_resp.rda |only sirt-2.3-57/sirt/data/data.big5.qgraph.rda |binary sirt-2.3-57/sirt/data/data.big5.rda |binary sirt-2.3-57/sirt/data/data.bs07a.rda |binary sirt-2.3-57/sirt/data/data.eid.kap4.rda |binary sirt-2.3-57/sirt/data/data.eid.kap5.rda |binary sirt-2.3-57/sirt/data/data.eid.kap6.rda |binary sirt-2.3-57/sirt/data/data.eid.kap7.rda |binary sirt-2.3-57/sirt/data/data.eid.rda |binary sirt-2.3-57/sirt/data/data.ess2005.rda |binary sirt-2.3-57/sirt/data/data.g308.rda |binary sirt-2.3-57/sirt/data/data.inv4gr.rda |binary sirt-2.3-57/sirt/data/data.liking.science.rda |binary sirt-2.3-57/sirt/data/data.long.rda |binary sirt-2.3-57/sirt/data/data.lsem01.rda |binary sirt-2.3-57/sirt/data/data.math.rda |binary sirt-2.3-57/sirt/data/data.mcdonald.LSAT6.rda |binary sirt-2.3-57/sirt/data/data.mcdonald.act15.rda |binary sirt-2.3-57/sirt/data/data.mcdonald.rape.rda |binary sirt-2.3-57/sirt/data/data.mixed1.rda |binary sirt-2.3-57/sirt/data/data.ml1.rda |binary sirt-2.3-57/sirt/data/data.ml2.rda |binary sirt-2.3-57/sirt/data/data.noharm18.rda |binary sirt-2.3-57/sirt/data/data.noharmExC.rda |binary sirt-2.3-57/sirt/data/data.pars1.2pl.rda |binary sirt-2.3-57/sirt/data/data.pars1.rasch.rda |binary sirt-2.3-57/sirt/data/data.pirlsmissing.rda |binary sirt-2.3-57/sirt/data/data.pisaMath.rda |binary sirt-2.3-57/sirt/data/data.pisaPars.rda |binary sirt-2.3-57/sirt/data/data.pisaRead.rda |binary sirt-2.3-57/sirt/data/data.pw01.rda |binary sirt-2.3-57/sirt/data/data.ratings1.rda |binary sirt-2.3-57/sirt/data/data.ratings2.rda |binary sirt-2.3-57/sirt/data/data.ratings3.rda |binary sirt-2.3-57/sirt/data/data.raw1.rda |binary sirt-2.3-57/sirt/data/data.read.rda |binary sirt-2.3-57/sirt/data/data.reck21.rda |binary sirt-2.3-57/sirt/data/data.reck61DAT1.rda |binary sirt-2.3-57/sirt/data/data.reck61DAT2.rda |binary sirt-2.3-57/sirt/data/data.reck73C1a.rda |binary sirt-2.3-57/sirt/data/data.reck73C1b.rda |binary sirt-2.3-57/sirt/data/data.reck75C2.rda |binary sirt-2.3-57/sirt/data/data.reck78ExA.rda |binary sirt-2.3-57/sirt/data/data.reck79ExB.rda |binary sirt-2.3-57/sirt/data/data.si01.rda |binary sirt-2.3-57/sirt/data/data.si02.rda |binary sirt-2.3-57/sirt/data/data.si03.rda |binary sirt-2.3-57/sirt/data/data.si04.rda |binary sirt-2.3-57/sirt/data/data.si05.rda |binary sirt-2.3-57/sirt/data/data.si06.rda |binary sirt-2.3-57/sirt/data/data.timss.rda |binary sirt-2.3-57/sirt/data/data.timss07.G8.RUS.rda |binary sirt-2.3-57/sirt/data/datalist | 2 sirt-2.3-57/sirt/inst/NEWS | 23 sirt-2.3-57/sirt/man/IRT.mle.Rd | 1 sirt-2.3-57/sirt/man/Q3.Rd | 5 sirt-2.3-57/sirt/man/Q3.testlet.Rd | 1 sirt-2.3-57/sirt/man/R2conquest.Rd | 1 sirt-2.3-57/sirt/man/R2noharm.EAP.Rd | 1 sirt-2.3-57/sirt/man/R2noharm.Rd | 1 sirt-2.3-57/sirt/man/R2noharm.jackknife.Rd | 1 sirt-2.3-57/sirt/man/automatic.recode.Rd | 1 sirt-2.3-57/sirt/man/brm.sim.Rd | 1 sirt-2.3-57/sirt/man/btm.Rd | 1 sirt-2.3-57/sirt/man/categorize.Rd | 1 sirt-2.3-57/sirt/man/ccov.np.Rd | 1 sirt-2.3-57/sirt/man/class.accuracy.rasch.Rd | 1 sirt-2.3-57/sirt/man/conf.detect.Rd | 8 sirt-2.3-57/sirt/man/data.activity.itempars.Rd | 1 sirt-2.3-57/sirt/man/data.befki.Rd |only sirt-2.3-57/sirt/man/data.big5.Rd | 1 sirt-2.3-57/sirt/man/data.bs.Rd | 1 sirt-2.3-57/sirt/man/data.eid.Rd | 1 sirt-2.3-57/sirt/man/data.ess2005.Rd | 1 sirt-2.3-57/sirt/man/data.g308.Rd | 1 sirt-2.3-57/sirt/man/data.inv4gr.Rd | 1 sirt-2.3-57/sirt/man/data.liking.science.Rd | 1 sirt-2.3-57/sirt/man/data.long.Rd | 1 sirt-2.3-57/sirt/man/data.lsem.Rd | 1 sirt-2.3-57/sirt/man/data.math.Rd | 1 sirt-2.3-57/sirt/man/data.mcdonald.Rd | 1 sirt-2.3-57/sirt/man/data.mixed1.Rd | 1 sirt-2.3-57/sirt/man/data.ml.Rd | 1 sirt-2.3-57/sirt/man/data.noharm.Rd | 1 sirt-2.3-57/sirt/man/data.pars1.rasch.Rd | 1 sirt-2.3-57/sirt/man/data.pirlsmissing.Rd | 1 sirt-2.3-57/sirt/man/data.pisaMath.Rd | 1 sirt-2.3-57/sirt/man/data.pisaPars.Rd | 1 sirt-2.3-57/sirt/man/data.pisaRead.Rd | 1 sirt-2.3-57/sirt/man/data.pw01.Rd | 1 sirt-2.3-57/sirt/man/data.ratings1.Rd | 1 sirt-2.3-57/sirt/man/data.raw1.Rd | 1 sirt-2.3-57/sirt/man/data.read.Rd | 1 sirt-2.3-57/sirt/man/data.reck.Rd | 1 sirt-2.3-57/sirt/man/data.si.Rd | 1 sirt-2.3-57/sirt/man/data.timss.Rd | 1 sirt-2.3-57/sirt/man/data.timss07.G8.RUS.Rd | 1 sirt-2.3-57/sirt/man/data.wide2long.Rd | 1 sirt-2.3-57/sirt/man/detect.index.Rd | 1 sirt-2.3-57/sirt/man/dif.logistic.regression.Rd | 1 sirt-2.3-57/sirt/man/dif.strata.variance.Rd | 1 sirt-2.3-57/sirt/man/dif.variance.Rd | 1 sirt-2.3-57/sirt/man/dirichlet.mle.Rd | 1 sirt-2.3-57/sirt/man/dirichlet.simul.Rd | 1 sirt-2.3-57/sirt/man/eigenvalues.manymatrices.Rd | 1 sirt-2.3-57/sirt/man/eigenvalues.sirt.Rd | 1 sirt-2.3-57/sirt/man/equating.rasch.Rd | 1 sirt-2.3-57/sirt/man/equating.rasch.jackknife.Rd | 1 sirt-2.3-57/sirt/man/expl.detect.Rd | 5 sirt-2.3-57/sirt/man/f1d.irt.Rd | 1 sirt-2.3-57/sirt/man/fit.isop.Rd | 1 sirt-2.3-57/sirt/man/fuzcluster.Rd | 1 sirt-2.3-57/sirt/man/fuzdiscr.Rd | 1 sirt-2.3-57/sirt/man/gom.em.Rd | 1 sirt-2.3-57/sirt/man/gom.jml.Rd | 1 sirt-2.3-57/sirt/man/greenyang.reliability.Rd | 1 sirt-2.3-57/sirt/man/invariance.alignment.Rd | 1 sirt-2.3-57/sirt/man/isop.Rd | 1 sirt-2.3-57/sirt/man/isop.scoring.Rd | 1 sirt-2.3-57/sirt/man/isop.test.Rd | 1 sirt-2.3-57/sirt/man/latent.regression.em.raschtype.Rd | 1 sirt-2.3-57/sirt/man/lavaan2mirt.Rd | 1 sirt-2.3-57/sirt/man/lc.2raters.Rd | 1 sirt-2.3-57/sirt/man/likelihood.adjustment.Rd | 1 sirt-2.3-57/sirt/man/linking.haberman.Rd | 1 sirt-2.3-57/sirt/man/linking.robust.Rd | 1 sirt-2.3-57/sirt/man/lsdm.Rd | 1 sirt-2.3-57/sirt/man/lsem.estimate.Rd | 1 sirt-2.3-57/sirt/man/lsem.permutationTest.Rd | 1 sirt-2.3-57/sirt/man/marginal.truescore.reliability.Rd | 1 sirt-2.3-57/sirt/man/matrixfunctions.sirt.Rd | 1 sirt-2.3-57/sirt/man/mcmc.2pno.Rd | 1 sirt-2.3-57/sirt/man/mcmc.2pno.ml.Rd | 1 sirt-2.3-57/sirt/man/mcmc.2pnoh.Rd | 1 sirt-2.3-57/sirt/man/mcmc.3pno.testlet.Rd | 1 sirt-2.3-57/sirt/man/mcmc.list.descriptives.Rd | 1 sirt-2.3-57/sirt/man/mcmc_Rhat.Rd | 1 sirt-2.3-57/sirt/man/mcmc_coef.Rd | 1 sirt-2.3-57/sirt/man/mcmclist2coda.Rd | 1 sirt-2.3-57/sirt/man/md.pattern.sirt.Rd | 1 sirt-2.3-57/sirt/man/mirt.specify.partable.Rd | 1 sirt-2.3-57/sirt/man/mirt.wrapper.Rd | 1 sirt-2.3-57/sirt/man/mle.pcm.group.Rd | 1 sirt-2.3-57/sirt/man/modelfit.sirt.Rd | 1 sirt-2.3-57/sirt/man/monoreg.rowwise.Rd | 1 sirt-2.3-57/sirt/man/nedelsky.sim.Rd | 1 sirt-2.3-57/sirt/man/noharm.sirt.Rd | 1 sirt-2.3-57/sirt/man/np.dich.Rd | 1 sirt-2.3-57/sirt/man/parmsummary_extend.Rd | 1 sirt-2.3-57/sirt/man/pbivnorm2.Rd | 1 sirt-2.3-57/sirt/man/pcm.conversion.Rd | 1 sirt-2.3-57/sirt/man/pcm.fit.Rd | 1 sirt-2.3-57/sirt/man/person.parameter.rasch.copula.Rd | 1 sirt-2.3-57/sirt/man/personfit.stat.Rd | 1 sirt-2.3-57/sirt/man/pgenlogis.Rd | 1 sirt-2.3-57/sirt/man/plausible.value.imputation.raschtype.Rd | 1 sirt-2.3-57/sirt/man/plot.mcmc.sirt.Rd | 1 sirt-2.3-57/sirt/man/plot.np.dich.Rd | 1 sirt-2.3-57/sirt/man/polychoric2.Rd | 1 sirt-2.3-57/sirt/man/prior_model_parse.Rd | 1 sirt-2.3-57/sirt/man/prmse.subscores.scales.Rd | 1 sirt-2.3-57/sirt/man/prob.guttman.Rd | 1 sirt-2.3-57/sirt/man/qmc.nodes.Rd | 1 sirt-2.3-57/sirt/man/rasch.copula.Rd | 1 sirt-2.3-57/sirt/man/rasch.evm.pcm.Rd | 1 sirt-2.3-57/sirt/man/rasch.jml.Rd | 1 sirt-2.3-57/sirt/man/rasch.jml.biascorr.Rd | 1 sirt-2.3-57/sirt/man/rasch.jml.jackknife1.Rd | 1 sirt-2.3-57/sirt/man/rasch.mirtlc.Rd | 1 sirt-2.3-57/sirt/man/rasch.mml.Rd | 1 sirt-2.3-57/sirt/man/rasch.pairwise.Rd | 1 sirt-2.3-57/sirt/man/rasch.pairwise.itemcluster.Rd | 1 sirt-2.3-57/sirt/man/rasch.pml3.Rd | 5 sirt-2.3-57/sirt/man/rasch.prox.Rd | 1 sirt-2.3-57/sirt/man/rasch.va.Rd | 1 sirt-2.3-57/sirt/man/reliability.nonlinearSEM.Rd | 1 sirt-2.3-57/sirt/man/rinvgamma2.Rd | 1 sirt-2.3-57/sirt/man/rm.facets.Rd | 113 sirt-2.3-57/sirt/man/rm.sdt.Rd | 62 sirt-2.3-57/sirt/man/sia.sirt.Rd | 1 sirt-2.3-57/sirt/man/sim.qm.ramsay.Rd | 1 sirt-2.3-57/sirt/man/sim.rasch.dep.Rd | 1 sirt-2.3-57/sirt/man/sim.raschtype.Rd | 1 sirt-2.3-57/sirt/man/sirt-defunct.Rd | 1 sirt-2.3-57/sirt/man/sirt-package.Rd | 1 sirt-2.3-57/sirt/man/sirt-utilities.Rd | 34 sirt-2.3-57/sirt/man/smirt.Rd | 1 sirt-2.3-57/sirt/man/stratified.cronbach.alpha.Rd | 1 sirt-2.3-57/sirt/man/summary.mcmc.sirt.Rd | 1 sirt-2.3-57/sirt/man/tam2mirt.Rd | 1 sirt-2.3-57/sirt/man/testlet.marginalized.Rd | 1 sirt-2.3-57/sirt/man/tetrachoric2.Rd | 1 sirt-2.3-57/sirt/man/truescore.irt.Rd | 1 sirt-2.3-57/sirt/man/unidim.test.csn.Rd | 1 sirt-2.3-57/sirt/man/wle.rasch.Rd | 1 sirt-2.3-57/sirt/man/wle.rasch.jackknife.Rd | 1 sirt-2.3-57/sirt/man/xxirt.Rd | 1 sirt-2.3-57/sirt/man/xxirt_createParTable.Rd | 1 sirt-2.3-57/sirt/man/xxirt_createThetaDistribution.Rd | 1 sirt-2.3-57/sirt/src/RcppExports.cpp | 1 sirt-2.3-57/sirt/src/eigenvaluessirt.cpp | 77 sirt-2.3-57/sirt/src/evm_comp_matrix_poly.cpp | 509 ++-- sirt-2.3-57/sirt/src/first_eigenvalue_sirt.h | 98 sirt-2.3-57/sirt/src/gooijer_isop.cpp | 1 sirt-2.3-57/sirt/src/gooijercsntableaux.h | 1 sirt-2.3-57/sirt/src/invariance_alignment.cpp | 151 - sirt-2.3-57/sirt/src/matrixfunctions_sirt.cpp | 1 sirt-2.3-57/sirt/src/mle_pcm_group_c.cpp | 1 sirt-2.3-57/sirt/src/noharm_sirt_auxfunctions.cpp | 1 sirt-2.3-57/sirt/src/pbivnorm_rcpp_aux.h | 1 sirt-2.3-57/sirt/src/polychoric2_tetrachoric2_rcpp_aux.cpp | 18 sirt-2.3-57/sirt/src/probs_multcat_items_counts_csirt.cpp | 1 sirt-2.3-57/sirt/src/rm_smirt_mml2_code.cpp | 137 - sirt-2.3-57/sirt/src/xxirt_functions.cpp | 103 611 files changed, 1910 insertions(+), 2832 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013,
<doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2017,
<doi:10.7287/peerj.preprints.3188v1>); see 'citation("Rcpp")' for details.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 0.12.13 dated 2017-09-28 and 0.12.14 dated 2017-11-23
ChangeLog | 58 +++++++++++++++++++ DESCRIPTION | 13 ++-- MD5 | 68 +++++++++++----------- build/Rcpp.pdf |binary build/vignette.rds |binary inst/CITATION | 70 ++++++++++++++--------- inst/NEWS.Rd | 22 +++++++ inst/bib/Rcpp.bib | 2 inst/doc/Rcpp-FAQ.Rmd | 3 inst/doc/Rcpp-FAQ.pdf |binary inst/doc/Rcpp-attributes.Rmd | 3 inst/doc/Rcpp-attributes.pdf |binary inst/doc/Rcpp-extending.Rmd | 3 inst/doc/Rcpp-extending.pdf |binary inst/doc/Rcpp-introduction.pdf |binary inst/doc/Rcpp-jss-2011.pdf |binary inst/doc/Rcpp-modules.Rmd | 3 inst/doc/Rcpp-modules.pdf |binary inst/doc/Rcpp-package.pdf |binary inst/doc/Rcpp-quickref.pdf |binary inst/doc/Rcpp-sugar.Rmd | 3 inst/doc/Rcpp-sugar.pdf |binary inst/doc/Rcpp-unitTests.pdf |binary inst/doc/Rcpp.bib | 2 inst/include/Rcpp.h | 4 - inst/include/Rcpp/config.h | 4 - inst/include/Rcpp/iostream/Rstreambuf.h | 49 ++++++---------- inst/include/Rcpp/vector/MatrixRow.h | 97 ++++++++++++++++++++++---------- inst/include/Rcpp/vector/VectorBase.h | 5 + vignettes/Rcpp-FAQ.Rmd | 3 vignettes/Rcpp-attributes.Rmd | 3 vignettes/Rcpp-extending.Rmd | 3 vignettes/Rcpp-modules.Rmd | 3 vignettes/Rcpp-sugar.Rmd | 3 vignettes/Rcpp.bib | 2 35 files changed, 296 insertions(+), 130 deletions(-)
Title: Depth Measures in Multivariate, Regression and Functional
Settings
Description: Tools to compute depth measures and implementations of related
tasks such as outlier detection, data exploration and
classification of multivariate, regression and functional data.
Author: Pieter Segaert [aut, cre],
Mia Hubert [aut],
Peter Rousseeuw [aut],
Jakob Raymaekers [aut],
Kaveh Vakili [ctb]
Maintainer: Pieter Segaert <Pieter.Segaert@kuleuven.be>
Diff between mrfDepth versions 1.0.5 dated 2017-10-13 and 1.0.6 dated 2017-11-23
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Misc.R | 2 +- inst/NEWS.Rd | 11 +++++++++++ src/randy.cpp | 5 ++--- 5 files changed, 22 insertions(+), 12 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. The standard textbook for such data is John Aitchison's (1986). "The statistical analysis of compositional data". Chapman & Hall.
Author: Michail Tsagris [aut, cre], Giorgos Athineou [aut]
Maintainer: Michail Tsagris <mtsagris@yahoo.gr>
Diff between Compositional versions 2.6 dated 2017-10-07 and 2.7 dated 2017-11-23
DESCRIPTION | 10 +- MD5 | 99 ++++++++++---------- NAMESPACE | 3 R/alfa.knn.R | 51 +++++----- R/alfa.tune.R | 2 R/alfadista.R |only R/alfaknn.tune.R | 20 ++-- R/alfapcr.tune.R | 9 - R/alfarda.tune.R | 13 -- R/alfareg.tune.R | 8 - R/alfaridge.tune.R | 15 +-- R/comp.den.R | 22 ++-- R/comp.knn.R | 206 ++++++++++++++++++++++++++----------------- R/compknn.tune.R | 24 +---- R/diri.reg.R | 1 R/diri.reg2.R | 8 - R/glm.pcr.R | 28 ++--- R/glmpcr.tune.R | 36 ++----- R/hotel1T2.R | 2 R/hotel2T2.R | 4 R/james.R | 13 +- R/maovjames.R | 3 R/mkde.R | 4 R/multivreg.R | 7 - R/ols.compreg.R | 8 - R/pcr.R | 42 ++------ R/pcr.tune.R | 54 ++++------- R/rda.R | 22 ++-- R/rda.tune.R | 7 - R/ridge.reg.R | 26 +---- R/ridge.tune.R | 21 +--- R/spatmed.reg.R | 3 man/Compositional-package.Rd | 7 - man/alfa.reg.Rd | 2 man/alfadist.Rd | 8 + man/alfapcr.tune.Rd | 7 - man/alfarda.tune.Rd | 8 - man/alfareg.tune.Rd | 12 -- man/alfaridge.tune.Rd | 10 -- man/comp.knn.Rd | 14 +- man/comp.reg.Rd | 28 ++--- man/compknn.tune.Rd | 6 - man/diri.reg.Rd | 29 ++++-- man/glmpcr.tune.Rd | 4 man/kl.compreg.Rd | 2 man/multivreg.Rd | 40 ++++---- man/ols.compreg.Rd | 30 +++--- man/pcr.tune.Rd | 4 man/rda.tune.Rd | 6 - man/ridge.tune.Rd | 9 - man/spatmed.reg.Rd | 2 51 files changed, 468 insertions(+), 531 deletions(-)
Title: Simulation of Dynamic Microbial Inactivation
Description: Prediction and adjustment to experimental data of microbial
inactivation. Several models available in the literature are implemented.
Author: Alberto Garre [aut, cre],
Pablo S. Fernandez [aut],
Jose A. Egea [aut]
Maintainer: Alberto Garre <garre.alberto@gmail.com>
Diff between bioinactivation versions 1.1.5 dated 2017-01-29 and 1.2.0 dated 2017-11-23
DESCRIPTION | 12 +- MD5 | 107 +++++++++--------- NAMESPACE | 9 + NEWS.md | 10 + R/arrhenius_model.R |only R/dynamic_fit.R | 2 R/fit_MCMC.R | 8 - R/function_mapping.R | 9 + R/isothermal_fit.R | 10 + R/isothermal_models.R | 23 +++ R/make_predictions.R | 11 + R/methods_s3_plot.R | 170 +++++++++++++++++++++++----- build/vignette.rds |binary inst/doc/inactivation.R | 14 ++ inst/doc/inactivation.Rmd | 53 ++++++++ inst/doc/inactivation.html | 202 +++++++++++++++++++--------------- man/Arrhenius_iso.Rd |only man/Bigelow_iso.Rd | 1 man/WeibullMafart_iso.Rd | 1 man/WeibullPeleg_iso.Rd | 1 man/build_temperature_interpolator.Rd | 1 man/check_model_params.Rd | 1 man/dArrhenius_model.Rd |only man/dBigelow_model.Rd | 2 man/dGeeraerd_model.Rd | 2 man/dMafart_model.Rd | 2 man/dPeleg_model.Rd | 2 man/dynamic_inactivation.Rd | 1 man/fit_dynamic_inactivation.Rd | 1 man/fit_inactivation_MCMC.Rd | 7 - man/fit_isothermal_inactivation.Rd | 4 man/get_isothermal_model_data.Rd | 1 man/get_model_data.Rd | 1 man/get_prediction_cost.Rd | 1 man/is.FitInactivation.Rd | 1 man/is.FitInactivationMCMC.Rd | 1 man/is.IsoFitInactivation.Rd | 1 man/is.PredInactivationMCMC.Rd | 1 man/is.SimulInactivation.Rd | 1 man/isothermal_inactivation.Rd | 1 man/laterosporus_dyna.Rd | 1 man/laterosporus_iso.Rd | 1 man/plot.FitInactivation.Rd | 15 ++ man/plot.FitInactivationMCMC.Rd | 15 ++ man/plot.IsoFitInactivation.Rd | 7 - man/plot.PredInactivationMCMC.Rd | 1 man/plot.SimulInactivation.Rd | 15 ++ man/predict_inactivation.Rd | 1 man/predict_inactivation_MCMC.Rd | 1 man/sample_IsoFit.Rd | 1 man/sample_MCMCfit.Rd | 1 man/sample_dynaFit.Rd | 1 man/summary.FitInactivation.Rd | 1 man/summary.FitInactivationMCMC.Rd | 1 man/summary.IsoFitInactivation.Rd | 1 vignettes/inactivation.Rmd | 53 ++++++++ 56 files changed, 555 insertions(+), 236 deletions(-)
More information about bioinactivation at CRAN
Permanent link
More information about TrajDataMining at CRAN
Permanent link
Title: Sustainable Transport Planning
Description: Functionality and data access tools for transport planning,
including origin-destination analysis, route allocation and modelling travel
patterns.
Author: Robin Lovelace [aut, cre] (0000-0001-5679-6536),
Richard Ellison [aut],
Barry Rowlingson [ctb] (Author of overline),
Nick Bearman [ctb] (Co-author of gclip),
Malcolm Morgan [ctb] (Co-author of angle_diff),
Nikolai Berkoff [ctb] (Co-author of line2route),
Scott Chamberlin [rev] (Scott reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/10)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stplanr versions 0.1.9 dated 2017-07-12 and 0.2.1 dated 2017-11-23
stplanr-0.1.9/stplanr/man/bb2poly.Rd |only stplanr-0.1.9/stplanr/man/gprojected.Rd |only stplanr-0.1.9/stplanr/man/line2points.Rd |only stplanr-0.1.9/stplanr/man/toptail.Rd |only stplanr-0.1.9/stplanr/vignettes/RJwrapper.brf |only stplanr-0.1.9/stplanr/vignettes/RJwrapper.pdf |only stplanr-0.1.9/stplanr/vignettes/RJwrapper.tex |only stplanr-0.1.9/stplanr/vignettes/stplanr-paper.tex |only stplanr-0.2.1/stplanr/DESCRIPTION | 23 stplanr-0.2.1/stplanr/MD5 | 206 ++--- stplanr-0.2.1/stplanr/NAMESPACE | 69 + stplanr-0.2.1/stplanr/NEWS.md | 24 stplanr-0.2.1/stplanr/R/RcppExports.R | 12 stplanr-0.2.1/stplanr/R/SpatialLinesNetwork.R | 374 +++++++-- stplanr-0.2.1/stplanr/R/aggregate_funs.R | 106 ++ stplanr-0.2.1/stplanr/R/as_sf_fun.R |only stplanr-0.2.1/stplanr/R/catchmentArea.R | 394 +++++++--- stplanr-0.2.1/stplanr/R/crs-funs.R | 40 - stplanr-0.2.1/stplanr/R/cyclestreets.R | 22 stplanr-0.2.1/stplanr/R/data.r | 58 - stplanr-0.2.1/stplanr/R/geo-functions.R | 220 ++++- stplanr-0.2.1/stplanr/R/geo_code.R | 52 + stplanr-0.2.1/stplanr/R/geo_projected.R |only stplanr-0.2.1/stplanr/R/line_sample.R |only stplanr-0.2.1/stplanr/R/linefuns.R | 57 + stplanr-0.2.1/stplanr/R/od-funs.R | 214 ++++- stplanr-0.2.1/stplanr/R/od_coords.R |only stplanr-0.2.1/stplanr/R/oneway.R | 1 stplanr-0.2.1/stplanr/R/osrmfunctions.R | 122 ++- stplanr-0.2.1/stplanr/R/overline.R | 261 ++++-- stplanr-0.2.1/stplanr/R/route.R |only stplanr-0.2.1/stplanr/R/routes.R | 30 stplanr-0.2.1/stplanr/R/stplanr-package.R | 14 stplanr-0.2.1/stplanr/R/toptail.R | 80 +- stplanr-0.2.1/stplanr/README.md | 50 - stplanr-0.2.1/stplanr/build/vignette.rds |binary stplanr-0.2.1/stplanr/data/cents_sf.rda |only stplanr-0.2.1/stplanr/data/destinations_sf.rda |only stplanr-0.2.1/stplanr/data/flowlines_sf.rda |only stplanr-0.2.1/stplanr/data/routes_fast_sf.rda |only stplanr-0.2.1/stplanr/data/routes_slow_sf.rda |only stplanr-0.2.1/stplanr/data/zones_sf.rda |only stplanr-0.2.1/stplanr/inst/doc/introducing-stplanr.R | 17 stplanr-0.2.1/stplanr/inst/doc/introducing-stplanr.Rmd | 23 stplanr-0.2.1/stplanr/inst/doc/introducing-stplanr.html | 53 - stplanr-0.2.1/stplanr/inst/doc/stplanr-paper.html | 68 - stplanr-0.2.1/stplanr/man/SpatialLinesNetwork.Rd | 8 stplanr-0.2.1/stplanr/man/angle_diff.Rd | 1 stplanr-0.2.1/stplanr/man/as_sf_fun.Rd |only stplanr-0.2.1/stplanr/man/bbox_scale.Rd | 20 stplanr-0.2.1/stplanr/man/buff_geo.Rd | 12 stplanr-0.2.1/stplanr/man/calc_catchment.Rd | 6 stplanr-0.2.1/stplanr/man/calc_catchment_sum.Rd | 6 stplanr-0.2.1/stplanr/man/cents.Rd | 15 stplanr-0.2.1/stplanr/man/destination_zones.Rd | 5 stplanr-0.2.1/stplanr/man/find_network_nodes.Rd | 2 stplanr-0.2.1/stplanr/man/flow.Rd | 4 stplanr-0.2.1/stplanr/man/flowlines.Rd | 8 stplanr-0.2.1/stplanr/man/gclip.Rd | 4 stplanr-0.2.1/stplanr/man/geo_bb.Rd |only stplanr-0.2.1/stplanr/man/geo_bb_matrix.Rd |only stplanr-0.2.1/stplanr/man/geo_buffer.Rd |only stplanr-0.2.1/stplanr/man/geo_code.Rd | 20 stplanr-0.2.1/stplanr/man/geo_projected.Rd |only stplanr-0.2.1/stplanr/man/geo_select_aeq.Rd |only stplanr-0.2.1/stplanr/man/geo_toptail.Rd |only stplanr-0.2.1/stplanr/man/gsection.Rd | 24 stplanr-0.2.1/stplanr/man/islines.Rd | 19 stplanr-0.2.1/stplanr/man/line2df.Rd | 1 stplanr-0.2.1/stplanr/man/line2route.Rd | 35 stplanr-0.2.1/stplanr/man/lineLabels.Rd | 6 stplanr-0.2.1/stplanr/man/line_bearing.Rd | 1 stplanr-0.2.1/stplanr/man/line_sample.Rd |only stplanr-0.2.1/stplanr/man/line_to_points.Rd |only stplanr-0.2.1/stplanr/man/locate2spdf.Rd | 6 stplanr-0.2.1/stplanr/man/mapshape.Rd | 12 stplanr-0.2.1/stplanr/man/n_sample_length.Rd |only stplanr-0.2.1/stplanr/man/n_vertices.Rd | 2 stplanr-0.2.1/stplanr/man/nearest2spdf.Rd | 6 stplanr-0.2.1/stplanr/man/nearest_cyclestreets.Rd | 8 stplanr-0.2.1/stplanr/man/nearest_osm.Rd | 6 stplanr-0.2.1/stplanr/man/od2line.Rd | 1 stplanr-0.2.1/stplanr/man/od_aggregate.Rd | 50 - stplanr-0.2.1/stplanr/man/od_coords.Rd |only stplanr-0.2.1/stplanr/man/onewaygeo.Rd | 16 stplanr-0.2.1/stplanr/man/onewayid.Rd | 1 stplanr-0.2.1/stplanr/man/overline.Rd | 43 - stplanr-0.2.1/stplanr/man/pipe.Rd |only stplanr-0.2.1/stplanr/man/plot-SpatialLinesNetwork-ANY-method.Rd | 2 stplanr-0.2.1/stplanr/man/plot-sfNetwork-ANY-method.Rd |only stplanr-0.2.1/stplanr/man/points2flow.Rd | 2 stplanr-0.2.1/stplanr/man/points2line.Rd | 2 stplanr-0.2.1/stplanr/man/points2odf.Rd | 1 stplanr-0.2.1/stplanr/man/route.Rd |only stplanr-0.2.1/stplanr/man/route_cyclestreet.Rd | 26 stplanr-0.2.1/stplanr/man/route_graphhopper.Rd | 2 stplanr-0.2.1/stplanr/man/route_network.Rd | 6 stplanr-0.2.1/stplanr/man/route_osrm.Rd |only stplanr-0.2.1/stplanr/man/routes_fast.Rd | 10 stplanr-0.2.1/stplanr/man/routes_slow.Rd | 7 stplanr-0.2.1/stplanr/man/sfNetwork-class.Rd |only stplanr-0.2.1/stplanr/man/sln2points.Rd | 6 stplanr-0.2.1/stplanr/man/sum_network_links.Rd | 8 stplanr-0.2.1/stplanr/man/sum_network_routes.Rd | 2 stplanr-0.2.1/stplanr/man/summary-SpatialLinesNetwork-method.Rd | 2 stplanr-0.2.1/stplanr/man/summary-sfNetwork-method.Rd |only stplanr-0.2.1/stplanr/man/toptail_buff.Rd | 2 stplanr-0.2.1/stplanr/man/toptailgs.Rd | 2 stplanr-0.2.1/stplanr/man/viaroute.Rd | 4 stplanr-0.2.1/stplanr/man/viaroute2sldf.Rd | 5 stplanr-0.2.1/stplanr/man/weightfield.Rd | 11 stplanr-0.2.1/stplanr/man/zones.Rd | 10 stplanr-0.2.1/stplanr/src/RcppExports.cpp | 37 stplanr-0.2.1/stplanr/src/spatialnetworks.cpp | 122 +++ stplanr-0.2.1/stplanr/tests/benchmarks/line2route-parallel.R | 11 stplanr-0.2.1/stplanr/tests/testthat/test-overline.R | 5 stplanr-0.2.1/stplanr/tests/testthat/test-route_cyclestreet.R | 4 stplanr-0.2.1/stplanr/vignettes/README-cycle-trip-1.png |binary stplanr-0.2.1/stplanr/vignettes/README-plot2-1.png |binary stplanr-0.2.1/stplanr/vignettes/README-rnet-1.png |binary stplanr-0.2.1/stplanr/vignettes/README-unnamed-chunk-11-1.png |binary stplanr-0.2.1/stplanr/vignettes/introducing-stplanr.Rmd | 23 122 files changed, 2259 insertions(+), 991 deletions(-)
Title: Spatial Ecology Miscellaneous Methods
Description: Collection of R functions and data sets for the support of spatial ecology analyses with a focus on pre-, core and post- modelling analyses of species distribution, niche quantification and community assembly. Written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) & Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland.
Author: Olivier Broennimann [aut],
Valeria Di Cola [cre, aut],
Blaise Petitpierre [ctb],
Frank Breiner [ctb],
Manuela D`Amen [ctb],
Christophe Randin [ctb],
Robin Engler [ctb],
Wim Hordijk [ctb],
Julien Pottier [ctb],
Mirko Di Febbraro [ctb],
Loic Pellissier [ctb],
Dorothea Pio [ctb],
Ruben Garcia Mateo [ctb],
Anne Dubuis [ctb],
Daniel Scherrer [ctb],
Luigi Maiorano [ctb],
Achilleas Psomas [ctb],
Charlotte Ndiribe [ctb],
Nicolas Salamin [ctb],
Niklaus Zimmermann [ctb],
Antoine Guisan [aut]
Maintainer: Valeria Di Cola <valeriadicola@gmail.com>
Diff between ecospat versions 2.1.1 dated 2016-11-02 and 2.2.0 dated 2017-11-23
ecospat-2.1.1/ecospat/R/ecospat.exdet.R |only ecospat-2.1.1/ecospat/inst/doc/ecospat.pdf |only ecospat-2.1.1/ecospat/inst/doc/vignette_ecospat_package.pdf |only ecospat-2.1.1/ecospat/man/ecospat.exdet.Rd |only ecospat-2.2.0/ecospat/DESCRIPTION | 17 ecospat-2.2.0/ecospat/MD5 | 68 ecospat-2.2.0/ecospat/NAMESPACE | 20 ecospat-2.2.0/ecospat/NEWS | 23 ecospat-2.2.0/ecospat/R/ecospat.CommunityEval.R | 15 ecospat-2.2.0/ecospat/R/ecospat.ESM.R | 519 +++--- ecospat-2.2.0/ecospat/R/ecospat.RangeSizeQuantification.R |only ecospat-2.2.0/ecospat/R/ecospat.binary_models.R | 52 ecospat-2.2.0/ecospat/R/ecospat.boyce.R | 3 ecospat-2.2.0/ecospat/R/ecospat.climan.R |only ecospat-2.2.0/ecospat/R/ecospat.co_occ.R | 908 +++++------ ecospat-2.2.0/ecospat/R/ecospat.cooccindex.R |only ecospat-2.2.0/ecospat/R/ecospat.makeDataFrame.R | 42 ecospat-2.2.0/ecospat/R/ecospat.mdr.R |only ecospat-2.2.0/ecospat/R/ecospat.nichedynamic.R | 4 ecospat-2.2.0/ecospat/R/ecospat.nicheoverlap.R | 734 ++++---- ecospat-2.2.0/ecospat/R/ecospat.occprep.R | 121 - ecospat-2.2.0/ecospat/build/vignette.rds |binary ecospat-2.2.0/ecospat/data/datalist | 3 ecospat-2.2.0/ecospat/data/ecospat.testMdr.txt.gz |only ecospat-2.2.0/ecospat/inst/doc/vignette_ecospat_package.R | 2 ecospat-2.2.0/ecospat/inst/doc/vignette_ecospat_package.Rmd | 8 ecospat-2.2.0/ecospat/inst/doc/vignette_ecospat_package.html |only ecospat-2.2.0/ecospat/inst/ecospat.pdf |only ecospat-2.2.0/ecospat/man/ecospat-package.Rd | 58 ecospat-2.2.0/ecospat/man/ecospat.CommunityEval.Rd | 5 ecospat-2.2.0/ecospat/man/ecospat.ESM.EnsembleModeling.Rd | 17 ecospat-2.2.0/ecospat/man/ecospat.ESM.EnsembleProjection.Rd | 3 ecospat-2.2.0/ecospat/man/ecospat.ESM.Modeling.Rd | 9 ecospat-2.2.0/ecospat/man/ecospat.ESM.Projection.Rd | 5 ecospat-2.2.0/ecospat/man/ecospat.binary.model.Rd | 112 - ecospat-2.2.0/ecospat/man/ecospat.climan.Rd |only ecospat-2.2.0/ecospat/man/ecospat.mdr.Rd |only ecospat-2.2.0/ecospat/man/ecospat.occ.desaggregation.Rd | 22 ecospat-2.2.0/ecospat/man/ecospat.occupied.patch.Rd |only ecospat-2.2.0/ecospat/man/ecospat.plot.overlap.test.Rd | 5 ecospat-2.2.0/ecospat/man/ecospat.rangesize.Rd |only ecospat-2.2.0/ecospat/man/ecospat.testMdr.Rd |only ecospat-2.2.0/ecospat/vignettes/vignette_ecospat_package.Rmd | 8 43 files changed, 1428 insertions(+), 1355 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Pacote para analise multivariada, que possui funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise de cluster hierarquico e nao hierarquico, regressao linear, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani <ossanipc@hotmail.com>
Marcelo Angelo Cirillo <macufla@des.ufla.br>
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 1.9.8 dated 2017-04-18 and 1.9.9 dated 2017-11-23
DESCRIPTION | 14 ++-- MD5 | 85 ++++++++++++++----------- NAMESPACE | 4 + R/Biplot.R | 61 ++++++++---------- R/CCA.R | 2 R/Cluster.R | 107 ++++++++++++++------------------ R/FA.R | 73 +++++++++++---------- R/GrandTour.R |only R/IM.R | 17 ++--- R/MDS.R | 54 ++++++---------- R/MFA.R | 18 ++--- R/PP_Index.R |only R/PP_Optimizer.R |only R/Plot.CA.R | 79 +++++++++++------------ R/Plot.CCA.R | 73 ++++++++++----------- R/Plot.FA.R | 91 +++++++++++++-------------- R/Plot.MFA.R | 163 ++++++++++++++++++++++++------------------------- R/Plot.PCA.R | 55 +++++++--------- R/Plot.PP.R |only R/Plot.Regressao.R | 122 +++++++++++++++++------------------- R/Regressao.R | 19 ++--- inst |only man/Biplot.Rd | 18 ++--- man/CA.Rd | 2 man/CCA.Rd | 6 - man/Cluster.Rd | 31 +++------ man/Data_Cafes.Rd | 8 +- man/Data_Individuos.Rd | 8 +- man/FA.Rd | 8 +- man/GrandTour.Rd |only man/IM.Rd | 9 +- man/LocLab.Rd | 7 -- man/MDS.Rd | 16 ++-- man/MFA.Rd | 12 +-- man/MVar.pt-package.Rd | 62 +++++++++++++++--- man/NormTest.Rd | 4 - man/PCA.Rd | 4 - man/PP_Index.Rd |only man/PP_Optimizer.Rd |only man/Plot.CA.Rd | 12 +-- man/Plot.CCA.Rd | 7 -- man/Plot.FA.Rd | 7 -- man/Plot.MFA.Rd | 20 ++---- man/Plot.PCA.Rd | 10 +-- man/Plot.PP.Rd |only man/Plot.Regressao.Rd | 20 ++---- man/Regressao.Rd | 14 +--- src |only 48 files changed, 653 insertions(+), 669 deletions(-)
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms.
Author: Marc Girondot <marc.girondot@u-psud.fr>
Maintainer: Marc Girondot <marc.girondot@u-psud.fr>
Diff between embryogrowth versions 7.0 dated 2017-09-26 and 7.1 dated 2017-11-23
DESCRIPTION | 8 +- MD5 | 48 +++++++----- NEWS | 7 + R/ChangeSSM.R | 26 +++--- R/SSM.R | 20 ++--- R/embryogrowth-package.R | 33 +++++++- R/info.nests.R | 55 ++++++++++--- R/plot.NestsResult.R | 55 +++++++++---- R/plotR.R | 2 R/resultNest_3p_Dallwitz.R |only R/resultNest_4p_SSM.R |only R/resultNest_5p_Dallwitz.R |only R/resultNest_6p_SSM.R |only R/searchR.R | 159 ++++++++++++++++++++++++++++++++++------ R/tempConst.R | 39 ++++++--- data/resultNest_3p_Dallwitz.rda |only data/resultNest_4p_SSM.rda |only data/resultNest_5p_Dallwitz.rda |only data/resultNest_6p_SSM.rda |only inst/shiny/ui.R | 2 man/ChangeSSM.Rd | 22 ++--- man/embryogrowth-package.Rd | 33 +++++++- man/info.nests.Rd | 26 ++++-- man/plot.NestsResult.Rd | 43 +++++++--- man/plotR.Rd | 2 man/resultNest_3p_Dallwitz.Rd |only man/resultNest_4p_SSM.Rd |only man/resultNest_5p_Dallwitz.Rd |only man/resultNest_6p_SSM.Rd |only man/searchR.Rd | 125 +++++++++++++++++++++++++++---- man/tempConst.Rd | 39 ++++++--- 31 files changed, 565 insertions(+), 179 deletions(-)
Title: Copula Based Bivariate Beta-Binomial Model for Diagnostic Test
Accuracy Studies
Description: Modelling of sensitivity and specificity on their natural scale
using copula based bivariate beta-binomial distribution to yield marginal
mean sensitivity and specificity. The intrinsic negative correlation between
sensitivity and specificity is modelled using a copula function. A forest plot
can be obtained for categorical covariates or for the model with intercept only.
Nyaga VN, Arbyn M, Aerts M (2017) <doi:10.18637/jss.v082.c01>.
Author: Victoria N Nyaga [aut, cre]
Maintainer: Victoria N Nyaga <victoria.nyaga@outlook.com>
Diff between CopulaDTA versions 0.0.6 dated 2017-10-11 and 1.0.0 dated 2017-11-23
DESCRIPTION | 9 ++++--- MD5 | 42 ++++++++++++++++++------------------- R/data.R | 4 +++ R/fit.R | 16 ++++++++++++++ R/model.R | 9 ++++--- R/plot.R | 28 ++++++++++++++++++------ R/print.R | 27 +++++++++++++++++------ R/summary.R | 29 +++++++++++++++++++------ R/traceplot.R | 41 +++++++++++++++++++++++++++++++----- inst/CITATION | 30 +++++++++++++++----------- inst/doc/CopulaDTA_Vignette.R | 13 ++++++----- inst/doc/CopulaDTA_Vignette.Rmd | 13 ++++++----- inst/doc/CopulaDTA_Vignette.html | 44 ++++++++++++++++++++------------------- man/ascus.Rd | 3 ++ man/cdtamodel.Rd | 10 +++++--- man/fit.cdtamodel.Rd | 17 +++++++++++++++ man/forestplot.cdtafit.Rd | 28 ++++++++++++++++++------ man/print.cdtafit.Rd | 27 +++++++++++++++++------ man/summary.cdtafit.Rd | 30 ++++++++++++++++++++------ man/telomerase.Rd | 3 ++ man/traceplot.cdtafit.Rd | 35 ++++++++++++++++++++++++++++++- vignettes/CopulaDTA_Vignette.Rmd | 13 ++++++----- 22 files changed, 339 insertions(+), 132 deletions(-)
Title: Tools for Biostatistics, Public Policy, and Law
Description: Statistical tests widely utilized in biostatistics, public policy, and law. Along with the well-known tests for equality of means and variances, randomness,
measures of relative variability etc, the package contains new robust tests of symmetry,
omnibus and directional tests of normality, and their graphical counterparts such as
Robust QQ plot; a robust trend tests for variances etc. All implemented tests and methods
are illustrated by simulations and real-life examples from legal statistics, economics,
and biostatistics.
Author: Joseph L. Gastwirth [aut],
Yulia R. Gel [aut],
W. L. Wallace Hui [aut],
Vyacheslav Lyubchich [aut, cre],
Weiwen Miao [aut],
Kimihiro Noguchi [aut]
Maintainer: Vyacheslav Lyubchich <lyubchic@umces.edu>
Diff between lawstat versions 3.1 dated 2017-01-16 and 3.2 dated 2017-11-23
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NAMESPACE | 3 +-- R/lnested.test.R | 6 +++--- R/ltrend.test.R | 6 +++--- man/brunner.munzel.test.Rd | 10 ++++++++-- man/lnested.test.Rd | 2 -- man/ltrend.test.Rd | 2 -- man/symmetry.test.Rd | 2 +- 9 files changed, 29 insertions(+), 28 deletions(-)
Title: Penalized Likelihood Estimation and Dynamic Prediction under the
Joint Frailty-Copula Models Between Tumour Progression and
Death for Meta-Analysis
Description: Perform the Cox regression and dynamic prediction methods under
the joint frailty-copula model between tumour progression and death for meta-analysis.
A penalized likelihood is employed for estimating model parameters, where the baseline hazard functions are approximated by smoothing splines.
The methods are applicable for meta-analytic data combining several studies.
The methods can analyze data having information on both terminal event time (e.g., time-to-death) and non-terminal event time (e.g., time-to-tumour progression).
See Emura et al. (2015) <doi:10.1177/0962280215604510> and
Emura et al. (2017) <doi:10.1177/0962280216688032> for details.
Survival data from ovarian cancer patients are also available.
Author: Takeshi Emura
Maintainer: Takeshi Emura <takeshiemura@gmail.com>
Diff between joint.Cox versions 2.13 dated 2017-09-03 and 2.14 dated 2017-11-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/joint.Cox-package.Rd | 4 ++-- man/splineCox.reg.Rd | 12 ++++++++---- 4 files changed, 17 insertions(+), 13 deletions(-)
Title: Functions for University of Auckland Course STATS 201/208 Data
Analysis
Description: A set of functions used in teaching STATS 201/208 Data Analysis at
the University of Auckland. The functions are designed to make parts of R more
accessible to a large undergraduate population who are mostly not statistics
majors.
Author: Andrew Balemi, Dineika Chandra, James Curran, Brant Deppa, Mike Forster,
Brendan McArdle, Ben Stevenson, Chris Wild
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between s20x versions 3.1-23 dated 2017-08-08 and 3.1-25 dated 2017-11-23
s20x-3.1-23/s20x/data/airpass.df.txt.gz |only s20x-3.1-23/s20x/data/apples.df.txt.gz |only s20x-3.1-23/s20x/data/arousal.df.txt.gz |only s20x-3.1-23/s20x/data/beer.df.txt.gz |only s20x-3.1-23/s20x/data/body.df.txt.gz |only s20x-3.1-23/s20x/data/books.df.txt.gz |only s20x-3.1-23/s20x/data/bursary.df.txt.gz |only s20x-3.1-23/s20x/data/butterfat.df.txt.gz |only s20x-3.1-23/s20x/data/camplake.df.txt.gz |only s20x-3.1-23/s20x/data/chalk.df.txt.gz |only s20x-3.1-23/s20x/data/computer.df.txt.gz |only s20x-3.1-23/s20x/data/course.df.txt.gz |only s20x-3.1-23/s20x/data/course2way.df.txt.gz |only s20x-3.1-23/s20x/data/diamonds.df.txt.gz |only s20x-3.1-23/s20x/data/fire.df.txt.gz |only s20x-3.1-23/s20x/data/fruitfly.df.txt.gz |only s20x-3.1-23/s20x/data/house.df.txt.gz |only s20x-3.1-23/s20x/data/incomes.df.txt.gz |only s20x-3.1-23/s20x/data/lakemary.df.txt.gz |only s20x-3.1-23/s20x/data/larain.df.txt.gz |only s20x-3.1-23/s20x/data/mazda.df.txt.gz |only s20x-3.1-23/s20x/data/mening.df.txt.gz |only s20x-3.1-23/s20x/data/mergers.df.txt.gz |only s20x-3.1-23/s20x/data/mozart.df.txt.gz |only s20x-3.1-23/s20x/data/nail.df.txt.gz |only s20x-3.1-23/s20x/data/oysters.df.txt.gz |only s20x-3.1-23/s20x/data/peru.df.txt.gz |only s20x-3.1-23/s20x/data/rain.df.txt.gz |only s20x-3.1-23/s20x/data/seeds.df.txt.gz |only s20x-3.1-23/s20x/data/sheep.df.txt.gz |only s20x-3.1-23/s20x/data/skulls.df.txt.gz |only s20x-3.1-23/s20x/data/soyabean.df.txt.gz |only s20x-3.1-23/s20x/data/teach.df.txt.gz |only s20x-3.1-23/s20x/data/technitron.df.txt.gz |only s20x-3.1-23/s20x/data/thyroid.df.txt.gz |only s20x-3.1-23/s20x/data/toothpaste.df.txt.gz |only s20x-3.1-23/s20x/data/zoo.df.txt.gz |only s20x-3.1-25/s20x/DESCRIPTION | 8 - s20x-3.1-25/s20x/MD5 | 100 +++++++------- s20x-3.1-25/s20x/NAMESPACE | 2 s20x-3.1-25/s20x/R/cooks20x.R | 30 +++- s20x-3.1-25/s20x/R/eovcheck.R | 28 ++-- s20x-3.1-25/s20x/R/modcheck.R |only s20x-3.1-25/s20x/R/normcheck.R | 202 +++++++++++++++++++++-------- s20x-3.1-25/s20x/R/pairs20x.R | 7 - s20x-3.1-25/s20x/R/summary2way.R | 85 ++++++++---- s20x-3.1-25/s20x/data/airpass.df.txt |only s20x-3.1-25/s20x/data/apples.df.txt |only s20x-3.1-25/s20x/data/arousal.df.txt |only s20x-3.1-25/s20x/data/beer.df.txt |only s20x-3.1-25/s20x/data/body.df.txt |only s20x-3.1-25/s20x/data/books.df.txt |only s20x-3.1-25/s20x/data/bursary.df.txt |only s20x-3.1-25/s20x/data/butterfat.df.txt |only s20x-3.1-25/s20x/data/camplake.df.txt |only s20x-3.1-25/s20x/data/chalk.df.txt |only s20x-3.1-25/s20x/data/computer.df.txt |only s20x-3.1-25/s20x/data/course.df.txt |only s20x-3.1-25/s20x/data/course2way.df.txt |only s20x-3.1-25/s20x/data/diamonds.df.txt |only s20x-3.1-25/s20x/data/fire.df.txt |only s20x-3.1-25/s20x/data/fruitfly.df.txt |only s20x-3.1-25/s20x/data/house.df.txt |only s20x-3.1-25/s20x/data/incomes.df.txt |only s20x-3.1-25/s20x/data/lakemary.df.txt |only s20x-3.1-25/s20x/data/larain.df.txt |only s20x-3.1-25/s20x/data/mazda.df.txt |only s20x-3.1-25/s20x/data/mening.df.txt |only s20x-3.1-25/s20x/data/mergers.df.txt |only s20x-3.1-25/s20x/data/mozart.df.txt |only s20x-3.1-25/s20x/data/nail.df.txt |only s20x-3.1-25/s20x/data/oysters.df.txt |only s20x-3.1-25/s20x/data/peru.df.txt |only s20x-3.1-25/s20x/data/rain.df.txt |only s20x-3.1-25/s20x/data/seeds.df.txt |only s20x-3.1-25/s20x/data/sheep.df.txt |only s20x-3.1-25/s20x/data/skulls.df.txt |only s20x-3.1-25/s20x/data/soyabean.df.txt |only s20x-3.1-25/s20x/data/teach.df.txt |only s20x-3.1-25/s20x/data/technitron.df.txt |only s20x-3.1-25/s20x/data/thyroid.df.txt |only s20x-3.1-25/s20x/data/toothpaste.df.txt |only s20x-3.1-25/s20x/data/zoo.df.txt |only s20x-3.1-25/s20x/man/cooks20x.Rd | 11 + s20x-3.1-25/s20x/man/eovcheck.Rd | 15 +- s20x-3.1-25/s20x/man/modcheck.Rd |only s20x-3.1-25/s20x/man/normcheck.Rd | 29 +++- s20x-3.1-25/s20x/man/pairs20x.Rd | 4 s20x-3.1-25/s20x/man/summary2way.Rd | 54 +++++-- 89 files changed, 398 insertions(+), 177 deletions(-)
Title: Satellite Nightlight Data Extraction
Description: The Rnightlights package extracts raster and zonal statistics
from satellite nightlight rasters downloaded from the United States
National Oceanic and Atmospheric Administration (<http://www.noaa.gov>)
free data repositories. Both the DMSP-OLS annual and SNPP-VIIRS monthly
nightlight raster data are supported. Satellite nightlight raster tiles are
downloaded and cropped to the country boundaries using shapefiles from the GADM
database of Global Administrative Areas (<http://gadm.org>). Zonal statistics
are then calculated at the lowest administrative boundary for the selected
country and cached locally for future retrieval. Finally, a simple data
explorer/browser is included that allows one to visualize the cached data e.g.
graphing, mapping and clustering regional data.
Author: Christopher Njuguna [aut, cre, cph],
Henrik Bengtsson [ctb] (data setup,
https://cran.r-project.org/package=R.cache),
Black Guru [ctb] (gdal zonal,
http://www.guru-gis.net/efficient-zonal-statistics-using-r-and-gdal/),
Jeff Chen [ctb] (masq function,
https://commercedataservice.github.io/tutorial_viirs_part1/),
Star Ying [ctb] (masq function,
https://commercedataservice.github.io/tutorial_viirs_part1/),
Chris Elvidge [ctb] (information + masq function)
Maintainer: Christopher Njuguna <chris.njuguna@gmail.com>
Diff between Rnightlights versions 0.1.3 dated 2017-11-21 and 0.1.4 dated 2017-11-23
DESCRIPTION | 6 ++--- MD5 | 52 ++++++++++++++++++++++---------------------- NEWS.md | 37 ++++++++++++++++--------------- R/ctrynldata.R | 12 +++++----- R/downloadnltiles.R | 6 ++--- R/getnlurl.R | 6 ++--- R/nightlights.R | 14 +++++------ R/nlperiod.R | 34 +++++++++++++--------------- R/tiles.R | 4 +-- R/utils.R | 2 - README.md | 22 ++++++++++-------- inst/application/server.R | 14 +++++------ man/downloadNlTiles.Rd | 4 +-- man/downloadNlTilesOLS.Rd | 2 - man/downloadNlTilesVIIRS.Rd | 4 +-- man/existsCtryNlData.Rd | 2 - man/getAllNlPeriods.Rd | 4 +-- man/getCtryNlData.Rd | 2 - man/getNlUrlVIIRS.Rd | 4 +-- man/insertNlDataCol.Rd | 2 - man/listNlTiles.Rd | 6 ++--- man/nlRange.Rd | 4 +-- man/pkgOptions.Rd | 4 +-- man/processNLCountry.Rd | 4 +-- man/processNlData.Rd | 8 +++--- man/validNlPeriod.Rd | 2 - man/validNlPeriodVIIRS.Rd | 8 +++--- 27 files changed, 136 insertions(+), 133 deletions(-)
Title: A Button-Based GUI for Financial and Economic Data Analysis
Description: A GUI designed to support the analysis of financial-economic time
series data.
Author: Ho Tsung-wu
Maintainer: Ho Tsung-wu <tsungwu@mail.shu.edu.tw>
Diff between iClick versions 1.2 dated 2016-02-24 and 1.3 dated 2017-11-23
DESCRIPTION | 14 ++++++------- MD5 | 21 ++++++++++++------- NAMESPACE | 11 +++++----- R/iClick_VisAssetPrice.R | 47 ++++++++++---------------------------------- R/iClick_VisOneReturns.R | 2 - R/iClick_functions.R | 25 +++++++++++++++++++++++ R/iClick_lm.R |only data/FFplusMOM.rda |only man/FFplusMOM.Rd |only man/VIF_no.Rd |only man/iClick.ARIMA.Rd | 12 +++++------ man/iClick.GARCH.Rd | 8 ++++--- man/iClick.VisOneReturns.Rd | 4 +-- man/iClick.lm.Rd |only 14 files changed, 76 insertions(+), 68 deletions(-)
More information about adjustedcranlogs at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-26 0.1.4
Title: Power and Reversal Power Distributions
Description: Density, distribution function, quantile function and random generation for the family of power and reversal power distributions.
Author: Susan Anyosa [aut, cre],
Jorge Luis Bazán Guzmán [aut],
Artur Lemonte [aut]
Maintainer: Susan Anyosa <susanaliciach@gmail.com>
Diff between powdist versions 0.1.3 dated 2017-08-16 and 0.1.4 dated 2017-11-23
powdist-0.1.3/powdist/R/dpc.R |only powdist-0.1.3/powdist/R/dpgmav.R |only powdist-0.1.3/powdist/R/dpgmiv.R |only powdist-0.1.3/powdist/R/dpl.R |only powdist-0.1.3/powdist/R/dpn.R |only powdist-0.1.3/powdist/R/drpc.R |only powdist-0.1.3/powdist/R/drpgmav.R |only powdist-0.1.3/powdist/R/drpgmiv.R |only powdist-0.1.3/powdist/R/drpl.R |only powdist-0.1.3/powdist/R/drpn.R |only powdist-0.1.3/powdist/R/ppc.R |only powdist-0.1.3/powdist/R/ppgmav.R |only powdist-0.1.3/powdist/R/ppgmiv.R |only powdist-0.1.3/powdist/R/ppl.R |only powdist-0.1.3/powdist/R/ppn.R |only powdist-0.1.3/powdist/R/prpc.R |only powdist-0.1.3/powdist/R/prpgmav.R |only powdist-0.1.3/powdist/R/prpgmiv.R |only powdist-0.1.3/powdist/R/prpl.R |only powdist-0.1.3/powdist/R/prpn.R |only powdist-0.1.3/powdist/R/qpc.R |only powdist-0.1.3/powdist/R/qpgmav.R |only powdist-0.1.3/powdist/R/qpgmiv.R |only powdist-0.1.3/powdist/R/qpl.R |only powdist-0.1.3/powdist/R/qpn.R |only powdist-0.1.3/powdist/R/qrpc.R |only powdist-0.1.3/powdist/R/qrpgmav.R |only powdist-0.1.3/powdist/R/qrpgmiv.R |only powdist-0.1.3/powdist/R/qrpl.R |only powdist-0.1.3/powdist/R/qrpn.R |only powdist-0.1.3/powdist/R/rpc.R |only powdist-0.1.3/powdist/R/rpgmav.R |only powdist-0.1.3/powdist/R/rpgmiv.R |only powdist-0.1.3/powdist/R/rpl.R |only powdist-0.1.3/powdist/R/rpn.R |only powdist-0.1.3/powdist/R/rrpc.R |only powdist-0.1.3/powdist/R/rrpgmav.R |only powdist-0.1.3/powdist/R/rrpgmiv.R |only powdist-0.1.3/powdist/R/rrpl.R |only powdist-0.1.3/powdist/R/rrpn.R |only powdist-0.1.3/powdist/man/pc.Rd |only powdist-0.1.3/powdist/man/pgmav.Rd |only powdist-0.1.3/powdist/man/pgmiv.Rd |only powdist-0.1.3/powdist/man/pl.Rd |only powdist-0.1.3/powdist/man/pn.Rd |only powdist-0.1.3/powdist/man/revpc.Rd |only powdist-0.1.3/powdist/man/revpgmav.Rd |only powdist-0.1.3/powdist/man/revpgmiv.Rd |only powdist-0.1.3/powdist/man/revpl.Rd |only powdist-0.1.3/powdist/man/revpn.Rd |only powdist-0.1.4/powdist/DESCRIPTION | 14 - powdist-0.1.4/powdist/MD5 | 143 ++++++++----- powdist-0.1.4/powdist/NAMESPACE | 123 +++++++---- powdist-0.1.4/powdist/R/dexpow.R |only powdist-0.1.4/powdist/R/dgumbel.R |only powdist-0.1.4/powdist/R/dpcauchy.R |only powdist-0.1.4/powdist/R/dpexpow.R |only powdist-0.1.4/powdist/R/dplaplace.R |only powdist-0.1.4/powdist/R/dplogis.R |only powdist-0.1.4/powdist/R/dpnorm.R |only powdist-0.1.4/powdist/R/dprgumbel.R |only powdist-0.1.4/powdist/R/dpt.R |only powdist-0.1.4/powdist/R/drgumbel.R |only powdist-0.1.4/powdist/R/drpcauchy.R |only powdist-0.1.4/powdist/R/drpexpow.R |only powdist-0.1.4/powdist/R/drplaplace.R |only powdist-0.1.4/powdist/R/drplogis.R |only powdist-0.1.4/powdist/R/drpnorm.R |only powdist-0.1.4/powdist/R/drprgumbel.R |only powdist-0.1.4/powdist/R/drpt.R |only powdist-0.1.4/powdist/R/pexpow.R |only powdist-0.1.4/powdist/R/pgumbel.R |only powdist-0.1.4/powdist/R/powdist-package.R | 10 powdist-0.1.4/powdist/R/ppcauchy.R |only powdist-0.1.4/powdist/R/ppexpow.R |only powdist-0.1.4/powdist/R/pplaplace.R |only powdist-0.1.4/powdist/R/pplogis.R |only powdist-0.1.4/powdist/R/ppnorm.R |only powdist-0.1.4/powdist/R/pprgumbel.R |only powdist-0.1.4/powdist/R/ppt.R |only powdist-0.1.4/powdist/R/prgumbel.R |only powdist-0.1.4/powdist/R/prpcauchy.R |only powdist-0.1.4/powdist/R/prpexpow.R |only powdist-0.1.4/powdist/R/prplaplace.R |only powdist-0.1.4/powdist/R/prplogis.R |only powdist-0.1.4/powdist/R/prpnorm.R |only powdist-0.1.4/powdist/R/prprgumbel.R |only powdist-0.1.4/powdist/R/prpt.R |only powdist-0.1.4/powdist/R/qexpow.R |only powdist-0.1.4/powdist/R/qgumbel.R |only powdist-0.1.4/powdist/R/qpcauchy.R |only powdist-0.1.4/powdist/R/qpexpow.R |only powdist-0.1.4/powdist/R/qplaplace.R |only powdist-0.1.4/powdist/R/qplogis.R |only powdist-0.1.4/powdist/R/qpnorm.R |only powdist-0.1.4/powdist/R/qprgumbel.R |only powdist-0.1.4/powdist/R/qpt.R |only powdist-0.1.4/powdist/R/qrgumbel.R |only powdist-0.1.4/powdist/R/qrpcauchy.R |only powdist-0.1.4/powdist/R/qrpexpow.R |only powdist-0.1.4/powdist/R/qrplaplace.R |only powdist-0.1.4/powdist/R/qrplogis.R |only powdist-0.1.4/powdist/R/qrpnorm.R |only powdist-0.1.4/powdist/R/qrprgumbel.R |only powdist-0.1.4/powdist/R/qrpt.R |only powdist-0.1.4/powdist/R/rexpow.R |only powdist-0.1.4/powdist/R/rgumbel.R |only powdist-0.1.4/powdist/R/rpcauchy.R |only powdist-0.1.4/powdist/R/rpexpow.R |only powdist-0.1.4/powdist/R/rplaplace.R |only powdist-0.1.4/powdist/R/rplogis.R |only powdist-0.1.4/powdist/R/rpnorm.R |only powdist-0.1.4/powdist/R/rprgumbel.R |only powdist-0.1.4/powdist/R/rpt.R |only powdist-0.1.4/powdist/R/rrgumbel.R |only powdist-0.1.4/powdist/R/rrpcauchy.R |only powdist-0.1.4/powdist/R/rrpexpow.R |only powdist-0.1.4/powdist/R/rrplaplace.R |only powdist-0.1.4/powdist/R/rrplogis.R |only powdist-0.1.4/powdist/R/rrpnorm.R |only powdist-0.1.4/powdist/R/rrprgumbel.R |only powdist-0.1.4/powdist/R/rrpt.R |only powdist-0.1.4/powdist/man/ExponentialPower.Rd |only powdist-0.1.4/powdist/man/Gumbel.Rd |only powdist-0.1.4/powdist/man/PowerCauchy.Rd |only powdist-0.1.4/powdist/man/PowerExponentialPower.Rd |only powdist-0.1.4/powdist/man/PowerLaplace.Rd |only powdist-0.1.4/powdist/man/PowerLogistic.Rd |only powdist-0.1.4/powdist/man/PowerNormal.Rd |only powdist-0.1.4/powdist/man/PowerReversalGumbel.Rd |only powdist-0.1.4/powdist/man/PowerT.Rd |only powdist-0.1.4/powdist/man/ReversalGumbel.Rd |only powdist-0.1.4/powdist/man/ReversalPowerCauchy.Rd |only powdist-0.1.4/powdist/man/ReversalPowerExponentialPower.Rd |only powdist-0.1.4/powdist/man/ReversalPowerLaplace.Rd |only powdist-0.1.4/powdist/man/ReversalPowerLogistic.Rd |only powdist-0.1.4/powdist/man/ReversalPowerNormal.Rd |only powdist-0.1.4/powdist/man/ReversalPowerReversalGumbel.Rd |only powdist-0.1.4/powdist/man/ReversalPowerT.Rd |only powdist-0.1.4/powdist/man/powdist-package.Rd | 10 140 files changed, 188 insertions(+), 112 deletions(-)
Title: Fitting Point Process Models via the Palm Likelihood
Description: Functions to fit point process models using the Palm likelihood. First proposed by Tanaka, Ogata, and Stoyan (2008) <DOI:10.1002/bimj.200610339>, maximisation of the Palm likelihood can provide computationally efficient parameter estimation for point process models in situations where the full likelihood is intractable. This package is chiefly focused on Neyman-Scott point processes, but can also fit void processes. The development of this package was motivated by the analysis of capture-recapture surveys on which individuals cannot be identified---the data from which can conceptually be seen as a clustered point process. As such, some of the functions in this package are specifically for the estimation of cetacean density from two-camera aerial surveys.
Author: Ben Stevenson <ben.stevenson@auckland.ac.nz>
Maintainer: Ben Stevenson <ben.stevenson@auckland.ac.nz>
Diff between palm versions 1.0.0 dated 2017-01-30 and 1.1.0 dated 2017-11-23
palm-1.0.0/palm/man/coef.palm_twocamerachild.Rd |only palm-1.1.0/palm/DESCRIPTION | 12 palm-1.1.0/palm/MD5 | 53 ++- palm-1.1.0/palm/NAMESPACE | 4 palm-1.1.0/palm/NEWS | 16 + palm-1.1.0/palm/R/RcppExports.R | 4 palm-1.1.0/palm/R/fit-ns.r | 320 ++++++++++++++---------- palm-1.1.0/palm/R/methods.r | 80 +++--- palm-1.1.0/palm/R/palm.r |only palm-1.1.0/palm/R/refclass.r | 124 +++++++-- palm-1.1.0/palm/README.md | 10 palm-1.1.0/palm/data/porpoise.RData |only palm-1.1.0/palm/man/boot.palm.Rd | 10 palm-1.1.0/palm/man/coef.palm.Rd | 13 palm-1.1.0/palm/man/confint.palm.Rd | 22 + palm-1.1.0/palm/man/example.1D.Rd | 8 palm-1.1.0/palm/man/example.2D.Rd | 8 palm-1.1.0/palm/man/example.twocamera.Rd | 3 palm-1.1.0/palm/man/fit.ns.Rd | 56 ++-- palm-1.1.0/palm/man/fit.twocamera.Rd | 39 ++ palm-1.1.0/palm/man/fit.void.Rd | 40 ++- palm-1.1.0/palm/man/palm.Rd |only palm-1.1.0/palm/man/plot.palm.Rd | 21 + palm-1.1.0/palm/man/porpoise.data.Rd |only palm-1.1.0/palm/man/sim.ns.Rd | 26 - palm-1.1.0/palm/man/sim.twocamera.Rd |only palm-1.1.0/palm/man/sim.void.Rd | 23 + palm-1.1.0/palm/man/summary.palm.Rd | 1 palm-1.1.0/palm/src/RcppExports.cpp | 4 palm-1.1.0/palm/src/palm_init.c |only palm-1.1.0/palm/tests/testthat/test-fits.r | 22 - 31 files changed, 615 insertions(+), 304 deletions(-)
Title: Floating-Point Genetic Algorithms with Statistical Forecast
Based Inheritance Operator
Description: The implemented algorithm performs a floating-point genetic algorithm search with a statistical forecasting operator that generates offspring which probably will be generated in future generations. Use of this operator enhances the search capabilities of floating-point genetic algorithms because offspring generated by usual genetic operators rapidly forecasted before performing more generations.
Author: Mehmet Hakan Satman
Maintainer: Mehmet Hakan Satman <mhsatman@istanbul.edu.tr>
Diff between forega versions 1.0.2 dated 2017-09-22 and 1.0.3 dated 2017-11-23
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/forega-package.Rd | 4 ++-- src/Chromosome.cpp | 2 +- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Corpora Co-Occurrence Comparison
Description: A set of functions used to compare co-occurrence between two corpora.
Author: Anthony Hennessey [aut, cre],
Viola Wiegand [aut],
Michaela Mahlberg [aut],
Christopher R. Tench [aut],
Jamie Lentin [aut]
Maintainer: Anthony Hennessey <anthony.hennessey@nottingham.ac.uk>
Diff between CorporaCoCo versions 1.0-2 dated 2017-03-31 and 1.1-0 dated 2017-11-23
ChangeLog | 17 +++++- DESCRIPTION | 17 +++--- MD5 | 41 +++++++++------ NEWS |only R/coco-class.R | 29 ++++------- R/coco.R | 9 +++ R/surface.R | 20 +++++++ R/surface_coco.R | 8 +-- README.md | 45 ++++++++++------- build |only inst/doc/faq.pdf |binary inst/doc/faq.pdf.asis |only inst/doc/proof_of_concept.pdf |binary inst/doc/proof_of_concept.pdf.asis |only man/CorporaCoCo-package.Rd | 10 ++- man/coco-class.Rd | 7 +- man/coco.Rd | 16 ++++-- man/surface.Rd | 65 ++++++++++++++++++------- man/surface_coco.Rd | 11 +++- tests/coco.R | 9 +++ tests/surface.R | 95 +++++++++++++++++++++++++++++++++++++ tests/surface_coco.R | 10 +++ tools |only vignettes |only 24 files changed, 307 insertions(+), 102 deletions(-)
Title: Mean and Variance Modeling of Binary Data
Description: Modeling under- and over-dispersed binary data using extended Poisson process models (EPPM) as in the article MJ Faddy and DM Smith (2012) <doi:10.1002/bimj.201100214> .
Author: David M Smith, Malcolm J Faddy
Maintainer: David M. Smith <smithdm1@us.ibm.com>
Diff between BinaryEPPM versions 2.0 dated 2016-11-28 and 2.1 dated 2017-11-23
DESCRIPTION | 12 - MD5 | 72 ++++---- R/BBprob.R | 5 R/BinaryEPPM.R | 304 +++++++++++++++++-------------------- R/CBprob.R | 27 +-- R/GBprob.R | 4 R/LL.Regression.Binary.R | 11 - R/Model.BCBinProb.R | 64 ++++--- R/Model.Binary.R | 4 R/Model.JMVGB.R | 71 ++++---- R/hatvalues.BinaryEPPM.R | 8 R/loglog.R | 2 R/negcomplog.R |only R/plot.BinaryEPPM.R | 3 R/predict.BinaryEPPM.R | 137 +++++++++++----- R/print.BinaryEPPM.R | 3 R/print.summaryBinaryEPPM.R | 14 - R/residuals.BinaryEPPM.R | 25 ++- R/summary.BinaryEPPM.R | 6 build/partial.rdb |binary data/Berkshires.litters.rda |binary data/GasolineYield.rda |binary data/Hiroshima.case.rda |binary data/Hiroshima.grouped.rda |binary data/KupperHaseman.case.rda |binary data/Luningetal.litters.rda |binary data/Parkes.litters.rda |binary data/Titanic.survivors.case.rda |binary data/Titanic.survivors.grouped.rda |binary data/Williams.litters.rda |binary data/Yorkshires.litters.rda |binary data/foodstamp.case.rda |binary data/foodstamp.grouped.rda |binary data/ropespores.case.rda |binary data/ropespores.grouped.rda |binary man/GasolineYield.Rd | 1 man/negcomplog.Rd |only man/predict.BinaryEPPM.Rd | 11 - 38 files changed, 416 insertions(+), 368 deletions(-)
Title: Convert 'ODK' or 'XLSForm' to 'SPSS' Data Frame
Description: After develop a 'ODK' <https://opendatakit.org/> frame, we can link the frame to 'Google Sheets' <https://www.google.com/sheets/about/> and collect data through 'Android' <https://www.android.com/>. This data uploaded to a 'Google sheets'. odk2spss() function help to convert the 'odk' frame into 'SPSS' <https://www.ibm.com/analytics/us/en/technology/spss/> frame. Also able to add downloaded 'Google sheets' data or read data from 'Google sheets' by using 'ODK' frame 'submission_url'.
Author: Muntashir-Al-Arefin
Maintainer: Muntashir-Al-Arefin <muntashir.a2i@gmail.com>
Diff between odk versions 1.3 dated 2017-11-02 and 1.4 dated 2017-11-23
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/odk2spss.R | 33 +++++++++++++++++++++++++++++---- 3 files changed, 34 insertions(+), 9 deletions(-)
Title: The W-Test on Genetic Interactions Testing
Description: Perform the calculation of W-test, diagnostic checking, calculate
minor allele frequency (MAF) and odds ratio.
Author: Rui Sun, Maggie Haitian Wang
Maintainer: Rui Sun <rsunzju@gmail.com>
Diff between wtest versions 1.0 dated 2016-08-05 and 2.0 dated 2017-11-23
DESCRIPTION | 11 +-- MD5 | 27 ++++--- NAMESPACE | 50 +++++++------- R/hf.calculation.R | 6 + R/table.function.R | 2 R/w.diagnosis.R | 3 R/w.qqplot.R | 11 ++- R/wtest.R | 10 ++ man/hf.calculation.Rd | 83 ++++++++++++----------- man/maf.Rd | 47 ++++++------- man/odds.ratio.Rd | 59 ++++++++--------- man/w.diagnosis.Rd | 100 ++++++++++++++-------------- man/w.qqplot.Rd | 84 +++++++++++++----------- man/wtest.Rd | 173 +++++++++++++++++++++++++------------------------- src/wtest_init.c |only 15 files changed, 346 insertions(+), 320 deletions(-)
Title: Geographic Information System Application
Description: A geographic information system (GIS) graphical user interface (GUI) that
provides data viewing, management, and analysis tools.
Author: Jason C. Fisher [aut, cre] (0000-0001-9032-8912)
Maintainer: Jason C. Fisher <jfisher@usgs.gov>
Diff between RSurvey versions 0.9.1 dated 2017-02-24 and 0.9.2 dated 2017-11-23
DESCRIPTION | 11 +--- LICENSE.note | 126 ++++++++++++++++++++++++++++++++++++++++++++------ MD5 | 20 +++---- NEWS.md | 8 +++ R/BuildHistogram.R | 7 +- R/ChoosePch.R | 2 R/ImportSpreadsheet.R | 2 R/ImportText.R | 2 R/LaunchGui.R | 48 ++++++++++--------- R/zzz.R | 18 +------ README.md | 50 +++++++++---------- 11 files changed, 198 insertions(+), 96 deletions(-)
Title: Multiple Hypotheses Testing for Discrete Data
Description: A comprehensive tool for almost all existing multiple testing
methods for discrete data. The package also provides some novel multiple testing
procedures controlling FWER/FDR for discrete data. Given discrete p-values
and their domains, the [method].p.adjust function returns adjusted p-values,
which can be used to compare with the nominal significant level alpha and make
decisions. For users' convenience, the functions also provide the output option
for printing decision rules.
Author: Yalin Zhu, Wenge Guo
Maintainer: Yalin Zhu <yalin.zhu@outlook.com>
Diff between MHTdiscrete versions 0.1.3 dated 2017-02-08 and 1.0.0 dated 2017-11-23
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ R/FWERSD.R | 8 ++++++++ R/FWERSS.R | 19 +++++++++++++++++++ R/FWERSU.R | 10 ++++++++-- R/MHTdiscrete.R | 2 +- R/Pval.R | 10 +++++++--- man/MBonf.p.adjust.Rd | 9 +++++++++ man/MHTdiscrete.Rd | 2 +- man/MHoch.p.adjust.Rd | 10 +++++++++- man/MHolm.p.adjust.Rd | 8 ++++++++ man/MixBonf.p.adjust.Rd | 12 ++++++++++++ man/getPval.Rd | 6 +++++- 13 files changed, 103 insertions(+), 25 deletions(-)