Title: Bootstrap Subsamplings of Sparse Partial Least Squares -
Discriminant Analysis for Classification and Signature
Identification
Description: Applicable to any classification problem with more than 2 classes. It relies on bootstrap subsamplings of sPLS-DA and provides tools to select the most stable variables (defined as the ones consistently selected over the bootstrap subsamplings) and to predict the class of test samples.
Author: Florian Rohart [aut, cre], Kim-Anh Le Cao [boss], Christine Wells [boss]
Maintainer: Florian Rohart <florian.rohart@gmail.com>
Diff between bootsPLS versions 1.0.3 dated 2015-08-20 and 1.1.1 dated 2017-12-17
bootsPLS-1.0.3/bootsPLS/R/CV.spls.constraint.R |only bootsPLS-1.0.3/bootsPLS/R/grey_area.R |only bootsPLS-1.1.1/bootsPLS/DESCRIPTION | 10 bootsPLS-1.1.1/bootsPLS/MD5 | 57 ++-- bootsPLS-1.1.1/bootsPLS/NAMESPACE | 7 bootsPLS-1.1.1/bootsPLS/NEWS | 15 + bootsPLS-1.1.1/bootsPLS/R/CI.prediction.R | 61 ++-- bootsPLS-1.1.1/bootsPLS/R/bootsPLS.R | 192 +++++---------- bootsPLS-1.1.1/bootsPLS/R/compile.bootsPLS.object.R | 34 +- bootsPLS-1.1.1/bootsPLS/R/fit.model.R | 95 ++++--- bootsPLS-1.1.1/bootsPLS/R/helpers.R | 10 bootsPLS-1.1.1/bootsPLS/R/plot.CI.R |only bootsPLS-1.1.1/bootsPLS/R/plot.bootsPLS.R | 31 ++ bootsPLS-1.1.1/bootsPLS/R/plot.selection.comp.variable.R | 4 bootsPLS-1.1.1/bootsPLS/R/prediction.R | 54 ++-- bootsPLS-1.1.1/bootsPLS/R/routine.R | 76 ++--- bootsPLS-1.1.1/bootsPLS/R/selection.R | 45 ++- bootsPLS-1.1.1/bootsPLS/R/spls.hybrid.R | 8 bootsPLS-1.1.1/bootsPLS/R/zzz.R |only bootsPLS-1.1.1/bootsPLS/man/CI.prediction.Rd | 19 - bootsPLS-1.1.1/bootsPLS/man/MSC.Rd | 2 bootsPLS-1.1.1/bootsPLS/man/bootsPLS-package.Rd | 17 - bootsPLS-1.1.1/bootsPLS/man/bootsPLS.Rd | 29 +- bootsPLS-1.1.1/bootsPLS/man/component.selection.Rd | 5 bootsPLS-1.1.1/bootsPLS/man/fit.model.Rd | 25 + bootsPLS-1.1.1/bootsPLS/man/plot.bootsPLS.Rd | 4 bootsPLS-1.1.1/bootsPLS/man/plot.component.selection.Rd | 2 bootsPLS-1.1.1/bootsPLS/man/plot.predictCI.Rd |only bootsPLS-1.1.1/bootsPLS/man/plot.variable.selection.Rd | 2 bootsPLS-1.1.1/bootsPLS/man/prediction.Rd | 16 - bootsPLS-1.1.1/bootsPLS/man/spls.hybrid.Rd | 6 bootsPLS-1.1.1/bootsPLS/man/variable.selection.Rd | 7 32 files changed, 433 insertions(+), 400 deletions(-)
Title: Datasets for Spatial Analysis
Description: Diverse spatial datasets for demonstrating, benchmarking and teaching spatial data analysis.
It includes R data of class sf (defined by the package 'sf'), Spatial (sp), and nb (spdep).
Unlike other spatial data packages such as 'rnaturalearth' and 'maps',
it also contains data stored in a range of file formats including GeoJSON, ESRI Shapefile and GeoPackage.
Some of the datasets are designed to illustrate specific analysis techniques.
cycle_hire and cycle_hire_osm, for example, is designed to illustrate point pattern analysis techniques.
Author: Roger Bivand [aut] (0000-0003-2392-6140),
Jakub Nowosad [aut, cre] (0000-0002-1057-3721),
Robin Lovelace [aut] (0000-0001-5679-6536)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between spData versions 0.2.6.7 dated 2017-11-28 and 0.2.6.8 dated 2017-12-17
spData-0.2.6.7/spData/inst/shapes/lnd.geojson |only spData-0.2.6.8/spData/DESCRIPTION | 26 +++++++++++++------------- spData-0.2.6.8/spData/MD5 | 12 +++++++----- spData-0.2.6.8/spData/R/lnd.R | 2 -- spData-0.2.6.8/spData/R/seine.R |only spData-0.2.6.8/spData/data/datalist | 1 + spData-0.2.6.8/spData/data/seine.rda |only spData-0.2.6.8/spData/man/lnd.Rd | 2 -- spData-0.2.6.8/spData/man/seine.Rd |only 9 files changed, 21 insertions(+), 22 deletions(-)
Title: Ratio-of-Uniforms Simulation with Transformation
Description: Uses the generalized ratio-of-uniforms (RU) method to simulate
from univariate and (low-dimensional) multivariate continuous distributions.
The user specifies the log-density, up to an additive constant. The RU
algorithm is applied after relocation of mode of the density to zero, and
the user can choose a tuning parameter r. For details see Wakefield, Gelfand
and Smith (1991) <DOI:10.1007/BF01889987>, Efficient generation of random
variates via the ratio-of-uniforms method, Statistics and Computing (1991)
1, 129-133. A Box-Cox variable transformation can be used to make the input
density suitable for the RU method and to improve efficiency. In the
multivariate case rotation of axes can also be used to improve efficiency.
From version 1.2.0 the 'Rcpp' package
<https://cran.r-project.org/package=Rcpp> can be used to improve efficiency.
Author: Paul J. Northrop [aut, cre, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between rust versions 1.2.3 dated 2017-08-28 and 1.3.3 dated 2017-12-17
rust-1.2.3/rust/tests/testthat/test_find_lambda.R |only rust-1.2.3/rust/tests/testthat/test_find_lambda_one_d.R |only rust-1.2.3/rust/tests/testthat/test_ru.R |only rust-1.2.3/rust/tests/testthat/test_ru_equal_ru_rcpp.R |only rust-1.2.3/rust/tests/testthat/test_ru_rcpp.R |only rust-1.3.3/rust/DESCRIPTION | 18 rust-1.3.3/rust/MD5 | 63 - rust-1.3.3/rust/NAMESPACE | 2 rust-1.3.3/rust/NEWS.md | 6 rust-1.3.3/rust/R/RcppExports.R | 110 +- rust-1.3.3/rust/R/gp_example.R | 694 ---------------- rust-1.3.3/rust/R/ru_sampling.R | 4 rust-1.3.3/rust/R/ru_sampling_rcpp.R | 4 rust-1.3.3/rust/R/rust.R | 2 rust-1.3.3/rust/R/sample_diagnostics.R | 12 rust-1.3.3/rust/README.md | 4 rust-1.3.3/rust/build/vignette.rds |binary rust-1.3.3/rust/inst/doc/rust-using-rcpp-vignette.R | 5 rust-1.3.3/rust/inst/doc/rust-using-rcpp-vignette.Rmd | 8 rust-1.3.3/rust/inst/doc/rust-using-rcpp-vignette.html | 35 rust-1.3.3/rust/inst/doc/rust-vignette.R | 9 rust-1.3.3/rust/inst/doc/rust-vignette.Rmd | 17 rust-1.3.3/rust/inst/doc/rust-vignette.html | 22 rust-1.3.3/rust/inst/doc/rust-when-to-use-vignette.R |only rust-1.3.3/rust/inst/doc/rust-when-to-use-vignette.Rmd |only rust-1.3.3/rust/inst/doc/rust-when-to-use-vignette.html |only rust-1.3.3/rust/man/find_lambda_rcpp.Rd | 4 rust-1.3.3/rust/man/ru.Rd | 4 rust-1.3.3/rust/man/ru_rcpp.Rd | 4 rust-1.3.3/rust/src/RcppExports.cpp | 65 - rust-1.3.3/rust/src/init.c |only rust-1.3.3/rust/tests/testthat/test-find_lambda.R |only rust-1.3.3/rust/tests/testthat/test-find_lambda_one_d.R |only rust-1.3.3/rust/tests/testthat/test-ru.R |only rust-1.3.3/rust/tests/testthat/test-ru_equal_ru_rcpp.R |only rust-1.3.3/rust/tests/testthat/test-ru_rcpp.R |only rust-1.3.3/rust/vignettes/rust-using-rcpp-vignette.Rmd | 5 rust-1.3.3/rust/vignettes/rust-vignette.Rmd | 11 rust-1.3.3/rust/vignettes/rust-when-to-use-vignette.Rmd |only rust-1.3.3/rust/vignettes/rust.bib | 18 40 files changed, 241 insertions(+), 885 deletions(-)
Title: Empirical Bayes Estimation and Inference
Description: Kiefer-Wolfowitz maximum likelihood estimation for mixture models
and some other density estimation and regression methods based on convex
optimization. See Koenker and Gu (2017) REBayes: An R Package for Empirical
Bayes Mixture Methods, Journal of Statistical Software, 82, 1--26,
<DOI:10.18637/jss.v082.i08>.
Author: Roger Koenker [aut, cre],
Jiaying Gu [ctb],
Ivan Mizera [ctb]
Maintainer: Roger Koenker <rkoenker@uiuc.edu>
Diff between REBayes versions 1.1 dated 2017-11-25 and 1.2 dated 2017-12-17
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- R/KWDual.R | 11 +++++++---- R/medde.R | 2 ++ inst/doc/Bdecon.R | 2 +- inst/doc/Bdecon.Rnw | 2 +- inst/doc/Bdecon.pdf |binary inst/doc/medde.pdf |binary inst/doc/rebayes.pdf |binary man/KWDual.Rd | 7 +++---- vignettes/Bdecon.Rnw | 2 +- 11 files changed, 29 insertions(+), 25 deletions(-)
Title: Pharmacokinetic and Pharmacodynamic Data Management Functions
Description: A toolbox for data management common to pharmacokinetic and
pharmacokinetic modeling and simulation, such as resampling,
area-under-the-curve calculation, data chunking, custom csv
output, and project scaffolding.
Author: Devin Pastoor [aut, cre]
Maintainer: Devin Pastoor <devin.pastoor@gmail.com>
Diff between PKPDmisc versions 2.0.0 dated 2017-08-22 and 2.1.1 dated 2017-12-17
PKPDmisc-2.0.0/PKPDmisc/R/ids_per_plot.R |only PKPDmisc-2.0.0/PKPDmisc/man/ids_per_plot.Rd |only PKPDmisc-2.1.1/PKPDmisc/DESCRIPTION | 16 PKPDmisc-2.1.1/PKPDmisc/LICENSE | 4 PKPDmisc-2.1.1/PKPDmisc/MD5 | 275 +++--- PKPDmisc-2.1.1/PKPDmisc/NAMESPACE | 154 +-- PKPDmisc-2.1.1/PKPDmisc/R/AUC_inf.R | 156 +-- PKPDmisc-2.1.1/PKPDmisc/R/AUC_partial.R | 82 - PKPDmisc-2.1.1/PKPDmisc/R/NCA.R | 152 +-- PKPDmisc-2.1.1/PKPDmisc/R/PKPDmisc.R | 104 +- PKPDmisc-2.1.1/PKPDmisc/R/RcppExports.R | 216 ++-- PKPDmisc-2.1.1/PKPDmisc/R/as_numeric.R | 32 PKPDmisc-2.1.1/PKPDmisc/R/base_theme.R | 68 - PKPDmisc-2.1.1/PKPDmisc/R/bring_to_front.R | 18 PKPDmisc-2.1.1/PKPDmisc/R/capitalize_names.R | 74 - PKPDmisc-2.1.1/PKPDmisc/R/char_to_numeric.R | 54 - PKPDmisc-2.1.1/PKPDmisc/R/chunk_df.R | 124 +- PKPDmisc-2.1.1/PKPDmisc/R/chunking.R |only PKPDmisc-2.1.1/PKPDmisc/R/color_pallete.R | 44 - PKPDmisc-2.1.1/PKPDmisc/R/cols_to_factor.R | 46 - PKPDmisc-2.1.1/PKPDmisc/R/cols_to_numeric.R | 46 - PKPDmisc-2.1.1/PKPDmisc/R/correlation_covariance.R | 52 - PKPDmisc-2.1.1/PKPDmisc/R/file_rows.R | 28 PKPDmisc-2.1.1/PKPDmisc/R/groups.R | 62 - PKPDmisc-2.1.1/PKPDmisc/R/has_ext.R | 44 - PKPDmisc-2.1.1/PKPDmisc/R/jprint.R | 68 - PKPDmisc-2.1.1/PKPDmisc/R/new_rmd.R | 96 +- PKPDmisc-2.1.1/PKPDmisc/R/nm_comments.R | 80 - PKPDmisc-2.1.1/PKPDmisc/R/non_numerics.R | 48 - PKPDmisc-2.1.1/PKPDmisc/R/nonmem_report.R | 66 - PKPDmisc-2.1.1/PKPDmisc/R/ordinal_to_binary.R | 114 +- PKPDmisc-2.1.1/PKPDmisc/R/pad_left.R | 32 PKPDmisc-2.1.1/PKPDmisc/R/peek.R | 72 - PKPDmisc-2.1.1/PKPDmisc/R/phx_report.R | 54 - PKPDmisc-2.1.1/PKPDmisc/R/print_plots.R | 130 +- PKPDmisc-2.1.1/PKPDmisc/R/readers.R | 344 +++---- PKPDmisc-2.1.1/PKPDmisc/R/rename_table_pattern.R | 44 - PKPDmisc-2.1.1/PKPDmisc/R/replace_empty.R | 54 - PKPDmisc-2.1.1/PKPDmisc/R/replace_from_template.R | 70 - PKPDmisc-2.1.1/PKPDmisc/R/replace_list_elements.R | 44 - PKPDmisc-2.1.1/PKPDmisc/R/replacements.R | 96 +- PKPDmisc-2.1.1/PKPDmisc/R/resampling_functions.R | 352 ++++---- PKPDmisc-2.1.1/PKPDmisc/R/rf51_factory.R | 51 - PKPDmisc-2.1.1/PKPDmisc/R/round_columns.R | 76 - PKPDmisc-2.1.1/PKPDmisc/R/s_factory.R | 60 - PKPDmisc-2.1.1/PKPDmisc/R/s_pauc.R | 146 +-- PKPDmisc-2.1.1/PKPDmisc/R/s_quantiles.R | 112 +- PKPDmisc-2.1.1/PKPDmisc/R/set_bins.R | 144 +-- PKPDmisc-2.1.1/PKPDmisc/R/set_bins_df.R | 196 ++-- PKPDmisc-2.1.1/PKPDmisc/R/strip_attributes.R | 78 - PKPDmisc-2.1.1/PKPDmisc/R/strip_curves.R | 114 +- PKPDmisc-2.1.1/PKPDmisc/R/utils-pipe.R | 22 PKPDmisc-2.1.1/PKPDmisc/R/utils.R | 32 PKPDmisc-2.1.1/PKPDmisc/R/view_creator.R | 66 - PKPDmisc-2.1.1/PKPDmisc/R/wam.R | 176 ++-- PKPDmisc-2.1.1/PKPDmisc/R/writers.R | 34 PKPDmisc-2.1.1/PKPDmisc/README.md | 146 +-- PKPDmisc-2.1.1/PKPDmisc/build/vignette.rds |binary PKPDmisc-2.1.1/PKPDmisc/inst/doc/multiplot.R | 86 - PKPDmisc-2.1.1/PKPDmisc/inst/doc/multiplot.Rmd | 170 +-- PKPDmisc-2.1.1/PKPDmisc/inst/doc/multiplot.html | 396 ++++----- PKPDmisc-2.1.1/PKPDmisc/inst/doc/noncompartmental-analysis.R | 46 - PKPDmisc-2.1.1/PKPDmisc/inst/doc/noncompartmental-analysis.Rmd | 150 +-- PKPDmisc-2.1.1/PKPDmisc/inst/doc/noncompartmental-analysis.html | 434 +++++----- PKPDmisc-2.1.1/PKPDmisc/inst/rmarkdown/templates/basic/skeleton/skeleton.Rmd | 74 - PKPDmisc-2.1.1/PKPDmisc/inst/rmarkdown/templates/basic/template.yaml | 10 PKPDmisc-2.1.1/PKPDmisc/man/as_numeric.Rd | 54 - PKPDmisc-2.1.1/PKPDmisc/man/auc_inf.Rd | 48 - PKPDmisc-2.1.1/PKPDmisc/man/auc_partial.Rd | 80 - PKPDmisc-2.1.1/PKPDmisc/man/auc_partial_cpp.Rd | 50 - PKPDmisc-2.1.1/PKPDmisc/man/base_theme.Rd | 74 - PKPDmisc-2.1.1/PKPDmisc/man/basename_sans_ext.Rd | 28 PKPDmisc-2.1.1/PKPDmisc/man/bring_to_front.Rd | 40 PKPDmisc-2.1.1/PKPDmisc/man/calculate_wam.Rd | 58 - PKPDmisc-2.1.1/PKPDmisc/man/capitalize_names.Rd | 56 - PKPDmisc-2.1.1/PKPDmisc/man/capture_groups.Rd | 40 PKPDmisc-2.1.1/PKPDmisc/man/char_to_numeric.Rd | 54 - PKPDmisc-2.1.1/PKPDmisc/man/chunk.Rd |only PKPDmisc-2.1.1/PKPDmisc/man/chunk_df.Rd | 56 - PKPDmisc-2.1.1/PKPDmisc/man/color_pallete.Rd | 52 - PKPDmisc-2.1.1/PKPDmisc/man/cols_to_factor.Rd | 42 PKPDmisc-2.1.1/PKPDmisc/man/cols_to_numeric.Rd | 42 PKPDmisc-2.1.1/PKPDmisc/man/cor_to_cov.Rd | 32 PKPDmisc-2.1.1/PKPDmisc/man/cov_to_cor.Rd | 34 PKPDmisc-2.1.1/PKPDmisc/man/dapa_IV_oral.Rd | 58 - PKPDmisc-2.1.1/PKPDmisc/man/file_rows.Rd | 34 PKPDmisc-2.1.1/PKPDmisc/man/fill_backward.Rd | 48 - PKPDmisc-2.1.1/PKPDmisc/man/fill_forward.Rd | 50 - PKPDmisc-2.1.1/PKPDmisc/man/has_ext.Rd | 58 - PKPDmisc-2.1.1/PKPDmisc/man/is_dir.Rd | 28 PKPDmisc-2.1.1/PKPDmisc/man/jprint.Rd | 72 - PKPDmisc-2.1.1/PKPDmisc/man/lowercase_names.Rd | 54 - PKPDmisc-2.1.1/PKPDmisc/man/max_through.Rd | 46 - PKPDmisc-2.1.1/PKPDmisc/man/min_through.Rd | 46 - PKPDmisc-2.1.1/PKPDmisc/man/nca.Rd | 56 - PKPDmisc-2.1.1/PKPDmisc/man/new_report.Rd | 40 PKPDmisc-2.1.1/PKPDmisc/man/nm_description.Rd | 46 - PKPDmisc-2.1.1/PKPDmisc/man/nm_notes.Rd | 58 - PKPDmisc-2.1.1/PKPDmisc/man/nonmem_report.Rd | 62 - PKPDmisc-2.1.1/PKPDmisc/man/ordinal_to_binary.Rd | 72 - PKPDmisc-2.1.1/PKPDmisc/man/pad_left.Rd | 44 - PKPDmisc-2.1.1/PKPDmisc/man/peek.Rd | 78 - PKPDmisc-2.1.1/PKPDmisc/man/phx_report.Rd | 62 - PKPDmisc-2.1.1/PKPDmisc/man/pipe.Rd | 24 PKPDmisc-2.1.1/PKPDmisc/man/print_plots.Rd | 102 +- PKPDmisc-2.1.1/PKPDmisc/man/read_nonmem.Rd | 58 - PKPDmisc-2.1.1/PKPDmisc/man/read_phx.Rd | 96 +- PKPDmisc-2.1.1/PKPDmisc/man/rename_table_pattern.Rd | 64 - PKPDmisc-2.1.1/PKPDmisc/man/replace_dots.Rd | 48 - PKPDmisc-2.1.1/PKPDmisc/man/replace_empty.Rd | 42 PKPDmisc-2.1.1/PKPDmisc/man/replace_from_template.Rd | 58 - PKPDmisc-2.1.1/PKPDmisc/man/replace_list_elements.Rd | 54 - PKPDmisc-2.1.1/PKPDmisc/man/replace_values.Rd | 84 - PKPDmisc-2.1.1/PKPDmisc/man/resample_df.Rd | 134 +-- PKPDmisc-2.1.1/PKPDmisc/man/rf51_factory.Rd | 56 - PKPDmisc-2.1.1/PKPDmisc/man/round_columns.Rd | 70 - PKPDmisc-2.1.1/PKPDmisc/man/s_pauc.Rd | 60 - PKPDmisc-2.1.1/PKPDmisc/man/s_quantiles.Rd | 54 - PKPDmisc-2.1.1/PKPDmisc/man/sd_oral_richpk.Rd | 56 - PKPDmisc-2.1.1/PKPDmisc/man/set_bins.Rd | 82 - PKPDmisc-2.1.1/PKPDmisc/man/set_bins_cpp.Rd | 44 - PKPDmisc-2.1.1/PKPDmisc/man/set_bins_df.Rd | 82 - PKPDmisc-2.1.1/PKPDmisc/man/set_groups.Rd | 58 - PKPDmisc-2.1.1/PKPDmisc/man/strip_attributes.Rd | 82 - PKPDmisc-2.1.1/PKPDmisc/man/strip_curves.Rd | 68 - PKPDmisc-2.1.1/PKPDmisc/man/unique_non_numerics.Rd | 72 - PKPDmisc-2.1.1/PKPDmisc/man/view_creator.Rd | 72 - PKPDmisc-2.1.1/PKPDmisc/man/wam.Rd | 54 - PKPDmisc-2.1.1/PKPDmisc/man/write_nonmem.Rd | 72 - PKPDmisc-2.1.1/PKPDmisc/tests/testthat.R | 8 PKPDmisc-2.1.1/PKPDmisc/tests/testthat/test-chunk.R |only PKPDmisc-2.1.1/PKPDmisc/tests/testthat/test-extensions.R | 24 PKPDmisc-2.1.1/PKPDmisc/tests/testthat/test-jprint.R | 16 PKPDmisc-2.1.1/PKPDmisc/tests/testthat/test-min-max-through.R | 62 - PKPDmisc-2.1.1/PKPDmisc/tests/testthat/test-pad-left.R | 16 PKPDmisc-2.1.1/PKPDmisc/tests/testthat/test-partial_auc.R | 30 PKPDmisc-2.1.1/PKPDmisc/tests/testthat/test-replacement-flags.R | 40 PKPDmisc-2.1.1/PKPDmisc/tests/testthat/test-replacements.R | 36 PKPDmisc-2.1.1/PKPDmisc/tests/testthat/test-resampling.R | 32 PKPDmisc-2.1.1/PKPDmisc/vignettes/multiplot.Rmd | 170 +-- PKPDmisc-2.1.1/PKPDmisc/vignettes/noncompartmental-analysis.Rmd | 150 +-- 141 files changed, 5314 insertions(+), 5302 deletions(-)
Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between git2r versions 0.19.0 dated 2017-07-19 and 0.20.0 dated 2017-12-17
git2r-0.19.0/git2r/src/libgit2/include/git2/sys/remote.h |only git2r-0.19.0/git2r/src/libgit2/src/curl_stream.c |only git2r-0.19.0/git2r/src/libgit2/src/curl_stream.h |only git2r-0.19.0/git2r/src/libgit2/src/openssl_stream.c |only git2r-0.19.0/git2r/src/libgit2/src/openssl_stream.h |only git2r-0.19.0/git2r/src/libgit2/src/socket_stream.c |only git2r-0.19.0/git2r/src/libgit2/src/socket_stream.h |only git2r-0.19.0/git2r/src/libgit2/src/stransport_stream.h |only git2r-0.19.0/git2r/src/libgit2/src/tls_stream.c |only git2r-0.19.0/git2r/src/libgit2/src/tls_stream.h |only git2r-0.20.0/git2r/DESCRIPTION | 6 git2r-0.20.0/git2r/MD5 | 561 ++--- git2r-0.20.0/git2r/NEWS | 17 git2r-0.20.0/git2r/R/S4_classes.r | 6 git2r-0.20.0/git2r/R/blob.r | 2 git2r-0.20.0/git2r/R/bundle_r_package.r | 4 git2r-0.20.0/git2r/R/checkout.r | 15 git2r-0.20.0/git2r/R/commit.r | 6 git2r-0.20.0/git2r/R/config.r | 6 git2r-0.20.0/git2r/R/diff.r | 8 git2r-0.20.0/git2r/R/index.r | 5 git2r-0.20.0/git2r/R/libgit2.r | 2 git2r-0.20.0/git2r/R/merge.r | 8 git2r-0.20.0/git2r/R/pull.r | 2 git2r-0.20.0/git2r/R/push.r | 10 git2r-0.20.0/git2r/R/refspec.r | 4 git2r-0.20.0/git2r/R/repository.r | 11 git2r-0.20.0/git2r/R/stash.r | 2 git2r-0.20.0/git2r/R/status.r | 2 git2r-0.20.0/git2r/R/tree.r | 4 git2r-0.20.0/git2r/cleanup | 1 git2r-0.20.0/git2r/configure | 566 +++-- git2r-0.20.0/git2r/configure.ac | 51 git2r-0.20.0/git2r/inst/CITATION | 2 git2r-0.20.0/git2r/src/Makevars.in | 29 git2r-0.20.0/git2r/src/Makevars.win | 4 git2r-0.20.0/git2r/src/git2r_cred.c | 5 git2r-0.20.0/git2r/src/git2r_transfer.h | 5 git2r-0.20.0/git2r/src/libgit2/include/git2.h | 1 git2r-0.20.0/git2r/src/libgit2/include/git2/common.h | 4 git2r-0.20.0/git2r/src/libgit2/include/git2/config.h | 3 git2r-0.20.0/git2r/src/libgit2/include/git2/describe.h | 2 git2r-0.20.0/git2r/src/libgit2/include/git2/diff.h | 63 git2r-0.20.0/git2r/src/libgit2/include/git2/graph.h | 3 git2r-0.20.0/git2r/src/libgit2/include/git2/patch.h | 4 git2r-0.20.0/git2r/src/libgit2/include/git2/remote.h | 38 git2r-0.20.0/git2r/src/libgit2/include/git2/repository.h | 12 git2r-0.20.0/git2r/src/libgit2/include/git2/reset.h | 8 git2r-0.20.0/git2r/src/libgit2/include/git2/status.h | 4 git2r-0.20.0/git2r/src/libgit2/include/git2/sys/config.h | 5 git2r-0.20.0/git2r/src/libgit2/include/git2/types.h | 1 git2r-0.20.0/git2r/src/libgit2/src/annotated_commit.c | 2 git2r-0.20.0/git2r/src/libgit2/src/annotated_commit.h | 2 git2r-0.20.0/git2r/src/libgit2/src/apply.c | 12 git2r-0.20.0/git2r/src/libgit2/src/apply.h | 2 git2r-0.20.0/git2r/src/libgit2/src/attr.c | 10 git2r-0.20.0/git2r/src/libgit2/src/attr.h | 2 git2r-0.20.0/git2r/src/libgit2/src/attr_file.c | 11 git2r-0.20.0/git2r/src/libgit2/src/attr_file.h | 2 git2r-0.20.0/git2r/src/libgit2/src/attrcache.c | 29 git2r-0.20.0/git2r/src/libgit2/src/attrcache.h | 2 git2r-0.20.0/git2r/src/libgit2/src/blame.c | 1 git2r-0.20.0/git2r/src/libgit2/src/blame.h | 3 git2r-0.20.0/git2r/src/libgit2/src/blame_git.c | 1 git2r-0.20.0/git2r/src/libgit2/src/blame_git.h | 2 git2r-0.20.0/git2r/src/libgit2/src/blob.c | 4 git2r-0.20.0/git2r/src/libgit2/src/blob.h | 2 git2r-0.20.0/git2r/src/libgit2/src/branch.c | 3 git2r-0.20.0/git2r/src/libgit2/src/branch.h | 2 git2r-0.20.0/git2r/src/libgit2/src/buf_text.h | 2 git2r-0.20.0/git2r/src/libgit2/src/cache.c | 13 git2r-0.20.0/git2r/src/libgit2/src/cache.h | 2 git2r-0.20.0/git2r/src/libgit2/src/cc-compat.h | 2 git2r-0.20.0/git2r/src/libgit2/src/checkout.c | 32 git2r-0.20.0/git2r/src/libgit2/src/checkout.h | 2 git2r-0.20.0/git2r/src/libgit2/src/cherrypick.c | 1 git2r-0.20.0/git2r/src/libgit2/src/clone.c | 3 git2r-0.20.0/git2r/src/libgit2/src/clone.h | 4 git2r-0.20.0/git2r/src/libgit2/src/commit.c | 3 git2r-0.20.0/git2r/src/libgit2/src/commit.h | 2 git2r-0.20.0/git2r/src/libgit2/src/commit_list.c | 2 git2r-0.20.0/git2r/src/libgit2/src/commit_list.h | 2 git2r-0.20.0/git2r/src/libgit2/src/common.h | 15 git2r-0.20.0/git2r/src/libgit2/src/config.c | 29 git2r-0.20.0/git2r/src/libgit2/src/config.h | 2 git2r-0.20.0/git2r/src/libgit2/src/config_cache.c | 1 git2r-0.20.0/git2r/src/libgit2/src/config_file.c | 1075 ++-------- git2r-0.20.0/git2r/src/libgit2/src/config_file.h | 6 git2r-0.20.0/git2r/src/libgit2/src/config_parse.c |only git2r-0.20.0/git2r/src/libgit2/src/config_parse.h |only git2r-0.20.0/git2r/src/libgit2/src/crlf.c | 3 git2r-0.20.0/git2r/src/libgit2/src/delta.h | 1 git2r-0.20.0/git2r/src/libgit2/src/describe.c | 4 git2r-0.20.0/git2r/src/libgit2/src/diff.c | 174 + git2r-0.20.0/git2r/src/libgit2/src/diff.h | 2 git2r-0.20.0/git2r/src/libgit2/src/diff_driver.c | 4 git2r-0.20.0/git2r/src/libgit2/src/diff_driver.h | 1 git2r-0.20.0/git2r/src/libgit2/src/diff_file.c | 9 git2r-0.20.0/git2r/src/libgit2/src/diff_file.h | 1 git2r-0.20.0/git2r/src/libgit2/src/diff_generate.c | 9 git2r-0.20.0/git2r/src/libgit2/src/diff_generate.h | 6 git2r-0.20.0/git2r/src/libgit2/src/diff_parse.c | 9 git2r-0.20.0/git2r/src/libgit2/src/diff_parse.h | 2 git2r-0.20.0/git2r/src/libgit2/src/diff_print.c | 11 git2r-0.20.0/git2r/src/libgit2/src/diff_stats.c | 20 git2r-0.20.0/git2r/src/libgit2/src/diff_tform.c | 3 git2r-0.20.0/git2r/src/libgit2/src/diff_tform.h | 4 git2r-0.20.0/git2r/src/libgit2/src/diff_xdiff.c | 7 git2r-0.20.0/git2r/src/libgit2/src/diff_xdiff.h | 2 git2r-0.20.0/git2r/src/libgit2/src/errors.c | 2 git2r-0.20.0/git2r/src/libgit2/src/fetch.c | 4 git2r-0.20.0/git2r/src/libgit2/src/fetch.h | 4 git2r-0.20.0/git2r/src/libgit2/src/fetchhead.c | 13 git2r-0.20.0/git2r/src/libgit2/src/fetchhead.h | 3 git2r-0.20.0/git2r/src/libgit2/src/filebuf.c | 3 git2r-0.20.0/git2r/src/libgit2/src/filebuf.h | 2 git2r-0.20.0/git2r/src/libgit2/src/fileops.c | 3 git2r-0.20.0/git2r/src/libgit2/src/fileops.h | 1 git2r-0.20.0/git2r/src/libgit2/src/filter.c | 3 git2r-0.20.0/git2r/src/libgit2/src/filter.h | 1 git2r-0.20.0/git2r/src/libgit2/src/fnmatch.c | 4 git2r-0.20.0/git2r/src/libgit2/src/global.c | 14 git2r-0.20.0/git2r/src/libgit2/src/global.h | 6 git2r-0.20.0/git2r/src/libgit2/src/graph.c | 2 git2r-0.20.0/git2r/src/libgit2/src/hash.c | 1 git2r-0.20.0/git2r/src/libgit2/src/hash.h | 2 git2r-0.20.0/git2r/src/libgit2/src/hash/hash_generic.c | 4 git2r-0.20.0/git2r/src/libgit2/src/hash/hash_generic.h | 2 git2r-0.20.0/git2r/src/libgit2/src/hash/hash_win32.c | 4 git2r-0.20.0/git2r/src/libgit2/src/hash/hash_win32.h | 1 git2r-0.20.0/git2r/src/libgit2/src/hashsig.c | 3 git2r-0.20.0/git2r/src/libgit2/src/ident.c | 2 git2r-0.20.0/git2r/src/libgit2/src/idxmap.h | 3 git2r-0.20.0/git2r/src/libgit2/src/ignore.c | 108 - git2r-0.20.0/git2r/src/libgit2/src/ignore.h | 2 git2r-0.20.0/git2r/src/libgit2/src/index.c | 31 git2r-0.20.0/git2r/src/libgit2/src/index.h | 2 git2r-0.20.0/git2r/src/libgit2/src/indexer.c | 10 git2r-0.20.0/git2r/src/libgit2/src/indexer.h | 6 git2r-0.20.0/git2r/src/libgit2/src/iterator.c | 10 git2r-0.20.0/git2r/src/libgit2/src/iterator.h | 1 git2r-0.20.0/git2r/src/libgit2/src/merge.c | 195 + git2r-0.20.0/git2r/src/libgit2/src/merge.h | 2 git2r-0.20.0/git2r/src/libgit2/src/merge_driver.c | 4 git2r-0.20.0/git2r/src/libgit2/src/merge_driver.h | 2 git2r-0.20.0/git2r/src/libgit2/src/merge_file.c | 1 git2r-0.20.0/git2r/src/libgit2/src/message.h | 2 git2r-0.20.0/git2r/src/libgit2/src/mwindow.c | 2 git2r-0.20.0/git2r/src/libgit2/src/mwindow.h | 2 git2r-0.20.0/git2r/src/libgit2/src/netops.c | 4 git2r-0.20.0/git2r/src/libgit2/src/netops.h | 3 git2r-0.20.0/git2r/src/libgit2/src/object.c | 4 git2r-0.20.0/git2r/src/libgit2/src/object.h | 2 git2r-0.20.0/git2r/src/libgit2/src/object_api.c | 5 git2r-0.20.0/git2r/src/libgit2/src/odb.c | 30 git2r-0.20.0/git2r/src/libgit2/src/odb.h | 2 git2r-0.20.0/git2r/src/libgit2/src/odb_loose.c | 1 git2r-0.20.0/git2r/src/libgit2/src/odb_mempack.c | 1 git2r-0.20.0/git2r/src/libgit2/src/odb_pack.c | 1 git2r-0.20.0/git2r/src/libgit2/src/offmap.h | 1 git2r-0.20.0/git2r/src/libgit2/src/oid.c | 3 git2r-0.20.0/git2r/src/libgit2/src/oid.h | 11 git2r-0.20.0/git2r/src/libgit2/src/oidarray.c | 3 git2r-0.20.0/git2r/src/libgit2/src/oidarray.h | 1 git2r-0.20.0/git2r/src/libgit2/src/oidmap.h | 1 git2r-0.20.0/git2r/src/libgit2/src/pack.c | 8 git2r-0.20.0/git2r/src/libgit2/src/pack.h | 3 git2r-0.20.0/git2r/src/libgit2/src/parse.c |only git2r-0.20.0/git2r/src/libgit2/src/parse.h |only git2r-0.20.0/git2r/src/libgit2/src/patch.c | 11 git2r-0.20.0/git2r/src/libgit2/src/patch.h | 2 git2r-0.20.0/git2r/src/libgit2/src/patch_generate.c | 11 git2r-0.20.0/git2r/src/libgit2/src/patch_generate.h | 1 git2r-0.20.0/git2r/src/libgit2/src/patch_parse.c | 496 ++-- git2r-0.20.0/git2r/src/libgit2/src/patch_parse.h | 17 git2r-0.20.0/git2r/src/libgit2/src/path.c | 3 git2r-0.20.0/git2r/src/libgit2/src/path.h | 14 git2r-0.20.0/git2r/src/libgit2/src/pathspec.c | 3 git2r-0.20.0/git2r/src/libgit2/src/pathspec.h | 3 git2r-0.20.0/git2r/src/libgit2/src/pool.c | 8 git2r-0.20.0/git2r/src/libgit2/src/pool.h | 1 git2r-0.20.0/git2r/src/libgit2/src/posix.c | 5 git2r-0.20.0/git2r/src/libgit2/src/posix.h | 4 git2r-0.20.0/git2r/src/libgit2/src/pqueue.c | 1 git2r-0.20.0/git2r/src/libgit2/src/pqueue.h | 2 git2r-0.20.0/git2r/src/libgit2/src/proxy.c | 9 git2r-0.20.0/git2r/src/libgit2/src/proxy.h | 3 git2r-0.20.0/git2r/src/libgit2/src/push.c | 7 git2r-0.20.0/git2r/src/libgit2/src/push.h | 2 git2r-0.20.0/git2r/src/libgit2/src/rebase.c | 28 git2r-0.20.0/git2r/src/libgit2/src/refdb.c | 5 git2r-0.20.0/git2r/src/libgit2/src/refdb.h | 2 git2r-0.20.0/git2r/src/libgit2/src/refdb_fs.c | 3 git2r-0.20.0/git2r/src/libgit2/src/refdb_fs.h | 4 git2r-0.20.0/git2r/src/libgit2/src/reflog.c | 10 git2r-0.20.0/git2r/src/libgit2/src/reflog.h | 1 git2r-0.20.0/git2r/src/libgit2/src/refs.c | 9 git2r-0.20.0/git2r/src/libgit2/src/refs.h | 1 git2r-0.20.0/git2r/src/libgit2/src/refspec.c | 4 git2r-0.20.0/git2r/src/libgit2/src/refspec.h | 2 git2r-0.20.0/git2r/src/libgit2/src/remote.c | 49 git2r-0.20.0/git2r/src/libgit2/src/remote.h | 2 git2r-0.20.0/git2r/src/libgit2/src/repository.c | 60 git2r-0.20.0/git2r/src/libgit2/src/repository.h | 2 git2r-0.20.0/git2r/src/libgit2/src/reset.c | 11 git2r-0.20.0/git2r/src/libgit2/src/revert.c | 1 git2r-0.20.0/git2r/src/libgit2/src/revparse.c | 12 git2r-0.20.0/git2r/src/libgit2/src/revwalk.c | 4 git2r-0.20.0/git2r/src/libgit2/src/revwalk.h | 2 git2r-0.20.0/git2r/src/libgit2/src/settings.c | 14 git2r-0.20.0/git2r/src/libgit2/src/sha1_lookup.c | 222 -- git2r-0.20.0/git2r/src/libgit2/src/sha1_lookup.h | 8 git2r-0.20.0/git2r/src/libgit2/src/signature.c | 12 git2r-0.20.0/git2r/src/libgit2/src/signature.h | 2 git2r-0.20.0/git2r/src/libgit2/src/sortedcache.c | 7 git2r-0.20.0/git2r/src/libgit2/src/sortedcache.h | 2 git2r-0.20.0/git2r/src/libgit2/src/stash.c | 28 git2r-0.20.0/git2r/src/libgit2/src/status.c | 23 git2r-0.20.0/git2r/src/libgit2/src/status.h | 2 git2r-0.20.0/git2r/src/libgit2/src/streams |only git2r-0.20.0/git2r/src/libgit2/src/submodule.c | 16 git2r-0.20.0/git2r/src/libgit2/src/submodule.h | 2 git2r-0.20.0/git2r/src/libgit2/src/sysdir.c | 2 git2r-0.20.0/git2r/src/libgit2/src/sysdir.h | 1 git2r-0.20.0/git2r/src/libgit2/src/tag.c | 4 git2r-0.20.0/git2r/src/libgit2/src/tag.h | 2 git2r-0.20.0/git2r/src/libgit2/src/thread-utils.c | 1 git2r-0.20.0/git2r/src/libgit2/src/trace.c | 4 git2r-0.20.0/git2r/src/libgit2/src/trace.h | 2 git2r-0.20.0/git2r/src/libgit2/src/transaction.c | 3 git2r-0.20.0/git2r/src/libgit2/src/transport.c | 2 git2r-0.20.0/git2r/src/libgit2/src/transports/auth.c | 3 git2r-0.20.0/git2r/src/libgit2/src/transports/auth.h | 2 git2r-0.20.0/git2r/src/libgit2/src/transports/auth_negotiate.h | 1 git2r-0.20.0/git2r/src/libgit2/src/transports/cred.c | 2 git2r-0.20.0/git2r/src/libgit2/src/transports/cred.h | 2 git2r-0.20.0/git2r/src/libgit2/src/transports/cred_helpers.c | 1 git2r-0.20.0/git2r/src/libgit2/src/transports/git.c | 4 git2r-0.20.0/git2r/src/libgit2/src/transports/http.c | 9 git2r-0.20.0/git2r/src/libgit2/src/transports/local.c | 3 git2r-0.20.0/git2r/src/libgit2/src/transports/smart.c | 4 git2r-0.20.0/git2r/src/libgit2/src/transports/smart.h | 3 git2r-0.20.0/git2r/src/libgit2/src/transports/smart_pkt.c | 9 git2r-0.20.0/git2r/src/libgit2/src/transports/smart_protocol.c | 24 git2r-0.20.0/git2r/src/libgit2/src/transports/ssh.c | 11 git2r-0.20.0/git2r/src/libgit2/src/transports/ssh.h | 2 git2r-0.20.0/git2r/src/libgit2/src/transports/winhttp.c | 4 git2r-0.20.0/git2r/src/libgit2/src/tree-cache.c | 10 git2r-0.20.0/git2r/src/libgit2/src/tree-cache.h | 1 git2r-0.20.0/git2r/src/libgit2/src/tree.c | 4 git2r-0.20.0/git2r/src/libgit2/src/tree.h | 2 git2r-0.20.0/git2r/src/libgit2/src/tsort.c | 10 git2r-0.20.0/git2r/src/libgit2/src/unix/map.c | 5 git2r-0.20.0/git2r/src/libgit2/src/unix/posix.h | 8 git2r-0.20.0/git2r/src/libgit2/src/unix/realpath.c | 5 git2r-0.20.0/git2r/src/libgit2/src/util.c | 6 git2r-0.20.0/git2r/src/libgit2/src/util.h | 144 - git2r-0.20.0/git2r/src/libgit2/src/varint.c | 1 git2r-0.20.0/git2r/src/libgit2/src/varint.h | 2 git2r-0.20.0/git2r/src/libgit2/src/vector.c | 2 git2r-0.20.0/git2r/src/libgit2/src/win32/dir.c | 3 git2r-0.20.0/git2r/src/libgit2/src/win32/dir.h | 1 git2r-0.20.0/git2r/src/libgit2/src/win32/error.c | 2 git2r-0.20.0/git2r/src/libgit2/src/win32/error.h | 2 git2r-0.20.0/git2r/src/libgit2/src/win32/findfile.c | 3 git2r-0.20.0/git2r/src/libgit2/src/win32/findfile.h | 2 git2r-0.20.0/git2r/src/libgit2/src/win32/map.c | 2 git2r-0.20.0/git2r/src/libgit2/src/win32/msvc-compat.h |only git2r-0.20.0/git2r/src/libgit2/src/win32/path_w32.c | 19 git2r-0.20.0/git2r/src/libgit2/src/win32/path_w32.h | 1 git2r-0.20.0/git2r/src/libgit2/src/win32/posix_w32.c | 16 git2r-0.20.0/git2r/src/libgit2/src/win32/precompiled.h | 3 git2r-0.20.0/git2r/src/libgit2/src/win32/reparse.h | 9 git2r-0.20.0/git2r/src/libgit2/src/win32/thread.h | 2 git2r-0.20.0/git2r/src/libgit2/src/win32/utf-conv.c | 1 git2r-0.20.0/git2r/src/libgit2/src/win32/utf-conv.h | 3 git2r-0.20.0/git2r/src/libgit2/src/win32/w32_buffer.c | 2 git2r-0.20.0/git2r/src/libgit2/src/win32/w32_buffer.h | 2 git2r-0.20.0/git2r/src/libgit2/src/win32/w32_util.h | 2 git2r-0.20.0/git2r/src/libgit2/src/worktree.c | 3 git2r-0.20.0/git2r/src/libgit2/src/worktree.h | 2 git2r-0.20.0/git2r/src/libgit2/src/xdiff/xdiff.h | 2 git2r-0.20.0/git2r/src/libgit2/src/xdiff/xdiffi.c | 611 ++++- git2r-0.20.0/git2r/src/libgit2/src/zstream.c | 3 git2r-0.20.0/git2r/src/libgit2/src/zstream.h | 3 285 files changed, 3037 insertions(+), 2725 deletions(-)
Title: Efficient Sampling for Gaussian Linear Regression with Arbitrary
Priors
Description: Efficient sampling for Gaussian linear regression with arbitrary priors.
Author: P. Richard Hahn, Jingyu He, Hedibert Lopes
Maintainer: Jingyu He <jingyu.he@chicagobooth.edu>
Diff between bayeslm versions 0.5.0 dated 2017-11-11 and 0.6.0 dated 2017-12-17
DESCRIPTION | 17 ++++++++------- MD5 | 27 ++++++++++++------------ NAMESPACE | 1 inst/include/bayeslm.h | 3 ++ src/Makevars | 1 src/Makevars.win |only src/RcppExports.cpp | 2 - src/asymmetric.cpp | 18 +++++++++------- src/bayeslm.cpp | 18 +++++++++------- src/blasso.cpp | 19 +++++++++-------- src/gibbs.cpp | 2 - src/horseshoe.cpp | 24 ++++++++++++++------- src/nonlocal.cpp | 18 +++++++++------- src/ridge.cpp | 19 +++++++++-------- src/utilityFunctions.cpp | 52 ++++++++++++++++++++++++++++++++++++++++++++++- 15 files changed, 147 insertions(+), 74 deletions(-)
Title: Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM)
Description: Evaluate arbitrary function calls using workers on HPC schedulers
in single line of code. All processing is done on the network without
accessing the file system. Remote schedulers are supported via SSH.
Author: Michael Schubert <mschu.dev@gmail.com>
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between clustermq versions 0.8.2 dated 2017-11-30 and 0.8.2.1 dated 2017-12-17
DESCRIPTION | 8 MD5 | 26 - R/qsys.r | 18 - R/qsys_local.r | 2 R/qsys_lsf.r | 15 R/qsys_multicore.r | 20 - R/qsys_sge.r | 15 R/qsys_slurm.r | 15 R/qsys_ssh.r | 2 build/vignette.rds |binary inst/doc/clustermq.html | 653 ++++++++++++++++++++-------------------- tests/testthat/test-qsys.r | 5 tests/testthat/test-ssh_proxy.r | 5 tests/testthat/test-worker.r | 13 14 files changed, 427 insertions(+), 370 deletions(-)
Title: Free Sorting Data Analysis
Description: Provides tools for describing and analysing free sorting data. Main methods are computation of consensus partition and factorial analysis of the dissimilarity matrix between stimuli (using multidimensional scaling approach).
Author: Philippe Courcoux
Maintainer: Philippe Courcoux <philippe.courcoux@oniris-nantes.fr>
Diff between FreeSortR versions 1.2 dated 2016-05-24 and 1.3 dated 2017-12-17
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/MdsDiss.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: A Synchronized Tausworthe RNG for R and Python
Description: Random number generation designed for cross-language usage.
Author: Gertjan van den Burg <gertjanvandenburg@gmail.com>
Maintainer: Gertjan van den Burg <gertjanvandenburg@gmail.com>
Diff between SyncRNG versions 1.2.1 dated 2016-10-16 and 1.3.0 dated 2017-12-17
DESCRIPTION | 8 +- MD5 | 17 +++--- NAMESPACE | 3 - NEWS.md |only R/SyncRNG.R | 4 + R/syncrng-package.R |only README.md | 27 ++++++++-- man/SyncRNG-class.Rd | 2 man/syncrng-package.Rd |only src/syncrng.c | 132 +++++++++++++++++++++++++++++++++++++++++++------ tests/testthat/tests.R | 15 +++++ 11 files changed, 175 insertions(+), 33 deletions(-)
Title: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Description: Some helpful extensions and modifications to the 'ggplot2'
package. In particular, this package makes it easy to combine multiple
'ggplot2' plots into one and label them with letters, e.g. A, B, C, etc.,
as is often required for scientific publications. The package also provides
a streamlined and clean theme that is used in the Wilke lab, hence the
package name, which stands for Claus O. Wilke's plot package.
Author: Claus O. Wilke [aut, cre],
RStudio [cph] (Copyright for ggplot2 code copied to cowplot)
Maintainer: Claus O. Wilke <wilke@austin.utexas.edu>
Diff between cowplot versions 0.9.0 dated 2017-11-16 and 0.9.2 dated 2017-12-17
DESCRIPTION | 6 ++-- MD5 | 36 +++++++++++++-------------- NEWS | 9 ++++++ R/draw.R | 27 +++++++++++--------- R/plot_grid.R | 12 +++++---- R/plot_to_gtable.R | 27 +++++++++++++------- R/save.R | 54 +++++++++++++++++++++++++++++++++-------- R/setup.R | 2 - inst/doc/axis_position.html | 4 +-- inst/doc/introduction.R | 12 --------- inst/doc/introduction.Rmd | 16 ------------ inst/doc/introduction.html | 42 ++++++++++++------------------- inst/doc/plot_annotations.html | 16 ++++++------ inst/doc/plot_grid.html | 30 +++++++++++----------- inst/doc/shared_legends.html | 14 +++++----- man/draw_image.Rd | 27 +++++++++++--------- man/ggsave.Rd | 2 - man/plot_grid.Rd | 12 +++++---- vignettes/introduction.Rmd | 16 ------------ 19 files changed, 185 insertions(+), 179 deletions(-)
Title: The Ames Iowa Housing Data
Description: Raw and processed versions of the data from De Cock (2011) <http://ww2.amstat.org/publications/jse> are included in the package.
Author: Max Kuhn [aut, cre],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between AmesHousing versions 0.0.2 dated 2017-09-26 and 0.0.3 dated 2017-12-17
AmesHousing-0.0.2/AmesHousing/README.md |only AmesHousing-0.0.3/AmesHousing/DESCRIPTION | 6 - AmesHousing-0.0.3/AmesHousing/MD5 | 19 +-- AmesHousing-0.0.3/AmesHousing/NEWS.md | 11 +- AmesHousing-0.0.3/AmesHousing/R/ames_raw.R | 101 +++++++++++++++++++- AmesHousing-0.0.3/AmesHousing/R/make_ames.R | 37 +++++-- AmesHousing-0.0.3/AmesHousing/data/ames_geo.rda |binary AmesHousing-0.0.3/AmesHousing/data/ames_schools.rda |only AmesHousing-0.0.3/AmesHousing/data/datalist | 3 AmesHousing-0.0.3/AmesHousing/man/ames_raw.Rd | 86 +++++++++++++++++ AmesHousing-0.0.3/AmesHousing/man/ames_schools.Rd |only AmesHousing-0.0.3/AmesHousing/man/make_ames.Rd | 15 +- 12 files changed, 247 insertions(+), 31 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-05 1.3
2014-11-18 1.2
2014-10-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-23 1.7.3-2
2017-04-19 1.7.2-12
2016-11-16 1.7.1-24
2016-02-11 1.7.0-14
2015-07-13 1.6.2-10
2015-04-20 1.6.0-12
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-13 1.3-9
2015-04-27 1.3-8
2014-01-13 1.3-6
2011-10-19 1.2-1
2011-07-23 1.2-0
2010-11-24 1.1-0
2010-05-16 1.0-7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-13 3.4-3
2014-01-06 3.3-3
2012-12-18 3.2
2011-10-20 2.0-02
2011-05-26 2.0-00
2011-02-18 1.1-0.1
2010-04-03 1.1-0
2010-03-11 1.0-9
2009-10-15 1.0-6
2009-01-26 1.0-5
2008-08-20 1.0-4
2007-12-10 1.0-3
2007-10-16 1.0-2
2007-10-14 1.0-1
2007-10-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-24 3.0
Title: Utilities for Zonation Spatial Conservation Prioritization
Software
Description: Create new analysis setups and deal with results of
Zonation conservation prioritization software <https://github.com/cbig/zonation-core>.
This package uses data available in the 'zdat' (7.7 MB) package
for building the vignettes.
Author: Joona Lehtomaki [aut, cre]
Maintainer: Joona Lehtomaki <joona.lehtomaki@gmail.com>
Diff between zonator versions 0.5.8 dated 2017-08-20 and 0.5.9 dated 2017-12-17
DESCRIPTION | 8 - MD5 | 14 +-- NEWS.md | 6 + build/vignette.rds |binary inst/doc/zonator-project.html | 4 inst/doc/zonator-results.html | 30 +++---- tests/testthat/test-04-zresults.R | 162 +++++++++++++++++++------------------- tests/testthat/test-06-zproject.R | 2 8 files changed, 116 insertions(+), 110 deletions(-)
Title: Implement Material Design in Shiny Applications
Description: Allows shiny developers to incorporate UI elements based on Google's Material design. See <https://material.io/guidelines/> for more information.
Author: Eric Anderson [aut, cre],
Alvin Wang [ctb, cph] (Materialize CSS library),
Alan Chang [ctb, cph] (Materialize CSS library),
Alex Mark [ctb, cph] (Materialize CSS library),
Kevin Louie [ctb, cph] (Materialize CSS library)
Maintainer: Eric Anderson <eric.ray.anderson@gmail.com>
Diff between shinymaterial versions 0.4.1 dated 2017-10-28 and 0.5.0 dated 2017-12-17
shinymaterial-0.4.1/shinymaterial/tests/github.R |only shinymaterial-0.5.0/shinymaterial/DESCRIPTION | 6 shinymaterial-0.5.0/shinymaterial/MD5 | 119 - shinymaterial-0.5.0/shinymaterial/NAMESPACE | 13 shinymaterial-0.5.0/shinymaterial/R/shiny-material-dropdown.R | 4 shinymaterial-0.5.0/shinymaterial/R/shiny-material-file-input.R |only shinymaterial-0.5.0/shinymaterial/R/shiny-material-page.R | 113 - shinymaterial-0.5.0/shinymaterial/R/shiny-material-spinner.R |only shinymaterial-0.5.0/shinymaterial/R/shiny-material-tabs.R | 15 shinymaterial-0.5.0/shinymaterial/R/shiny-material-utils.R | 16 shinymaterial-0.5.0/shinymaterial/R/update-shiny-material-checkbox.R |only shinymaterial-0.5.0/shinymaterial/R/update-shiny-material-date-picker.R |only shinymaterial-0.5.0/shinymaterial/R/update-shiny-material-dropdown.R |only shinymaterial-0.5.0/shinymaterial/R/update-shiny-material-number-box.R |only shinymaterial-0.5.0/shinymaterial/R/update-shiny-material-password-box.R |only shinymaterial-0.5.0/shinymaterial/R/update-shiny-material-radio-button.R |only shinymaterial-0.5.0/shinymaterial/R/update-shiny-material-slider.R |only shinymaterial-0.5.0/shinymaterial/R/update-shiny-material-switch.R |only shinymaterial-0.5.0/shinymaterial/R/update-shiny-material-text-box.R |only shinymaterial-0.5.0/shinymaterial/inst/doc/shinymaterial.pdf |binary shinymaterial-0.5.0/shinymaterial/inst/img |only shinymaterial-0.5.0/shinymaterial/inst/js/shiny-material-checkbox.js | 50 shinymaterial-0.5.0/shinymaterial/inst/js/shiny-material-file-input.js |only shinymaterial-0.5.0/shinymaterial/inst/js/shiny-material-side-nav-tabs.js | 2 shinymaterial-0.5.0/shinymaterial/inst/js/shiny-material-slider.js | 13 shinymaterial-0.5.0/shinymaterial/inst/js/shiny-material-tabs.js | 1 shinymaterial-0.5.0/shinymaterial/inst/materialize |only shinymaterial-0.5.0/shinymaterial/man/material_file_input.Rd |only shinymaterial-0.5.0/shinymaterial/man/material_page.Rd | 12 shinymaterial-0.5.0/shinymaterial/man/material_spinner_show.Rd |only shinymaterial-0.5.0/shinymaterial/man/update_material_checkbox.Rd |only shinymaterial-0.5.0/shinymaterial/man/update_material_date_picker.Rd |only shinymaterial-0.5.0/shinymaterial/man/update_material_dropdown.Rd |only shinymaterial-0.5.0/shinymaterial/man/update_material_number_box.Rd |only shinymaterial-0.5.0/shinymaterial/man/update_material_password_box.Rd |only shinymaterial-0.5.0/shinymaterial/man/update_material_radio_button.Rd |only shinymaterial-0.5.0/shinymaterial/man/update_material_slider.Rd |only shinymaterial-0.5.0/shinymaterial/man/update_material_switch.Rd |only shinymaterial-0.5.0/shinymaterial/man/update_material_text_box.Rd |only shinymaterial-0.5.0/shinymaterial/tests/app.R | 1096 +++++----- shinymaterial-0.5.0/shinymaterial/tests/fileInputTest |only shinymaterial-0.5.0/shinymaterial/tests/include_font_app |only shinymaterial-0.5.0/shinymaterial/tests/renderUITest |only shinymaterial-0.5.0/shinymaterial/tests/test.csv |only shinymaterial-0.5.0/shinymaterial/tests/testUpdateDropdown |only shinymaterial-0.5.0/shinymaterial/tests/test_spinner |only shinymaterial-0.5.0/shinymaterial/tests/www |only 47 files changed, 925 insertions(+), 535 deletions(-)
Title: Heatmaps for Multiple Network Data
Description: Simplify the exploratory data analysis process for multiple network data sets with the help
of hierarchical clustering and heatmaps. Multiple network data consists of multiple disjoint
networks that share common graph, node and edge variables. Contains the tools necessary to
convert this raw data into a single dynamic report, summarizing the relationships
of the graph, node and structural characteristics of the networks.
Author: Phil Boileau [aut, cre]
Maintainer: Phil Boileau <philippe.boileau@mail.concordia.ca>
Diff between neatmaps versions 1.0.6 dated 2017-10-16 and 1.0.7 dated 2017-12-17
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/plotDendrogram.R | 7 +++---- README.md | 20 +++----------------- 4 files changed, 13 insertions(+), 28 deletions(-)
Title: Bindings to Selected 'liblwgeom' Functions for Simple Features
Description: Access to selected functions found in 'liblwgeom' <https://github.com/postgis/postgis/tree/svn-trunk/liblwgeom>, the geometry library used by 'PostGIS' <http://postgis.net/>.
Author: Edzer Pebesma [aut, cre] (0000-0001-8049-7069),
Colin Rundel [ctb],
liblwgeom developers [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between lwgeom versions 0.1-0 dated 2017-11-16 and 0.1-1 dated 2017-12-17
DESCRIPTION | 13 MD5 | 58 + NAMESPACE | 5 R/RcppExports.R | 16 R/bounding_circle.R | 8 R/geodetic.R | 30 - R/init.R | 7 R/split.R | 1 R/subdivide.R |only R/valid.R | 2 configure | 1157 ++++++++++++++++++++++++++++++++++++++- configure.ac | 323 ++++++++++ man/bounding_circle.Rd | 4 man/lw_geodetic.Rd | 15 man/st_split.Rd | 3 man/st_subdivide.Rd |only man/valid.Rd | 2 src/Makevars.in | 2 src/Makevars.win | 2 src/RcppExports.cpp | 53 + src/geodetic.cpp | 16 src/geos.cpp |only src/liblwgeom/lwboundingcircle.c | 3 src/lwgeom.cpp | 10 src/proj.cpp |only tests/azimuth.Rout.save | 6 tests/geod.R | 6 tests/geod.Rout.save | 23 tests/testthat.Rout.save | 6 tests/testthat/test_lwgeom.R | 10 tests/twkb.R | 2 tests/twkb.Rout.save | 14 32 files changed, 1699 insertions(+), 98 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.2 dated 2017-02-15 and 0.3.3 dated 2017-12-17
ChangeLog | 75 +++++ DESCRIPTION | 8 MD5 | 42 +- README.md | 28 + build/vignette.rds |binary inst/NEWS.Rd | 30 +- inst/doc/littler-examples.Rmd | 131 ++++----- inst/doc/littler-examples.html | 535 ++++++++++++++++++++++++-------------- inst/examples/build.r | 26 + inst/examples/c4c.r | 2 inst/examples/cow.r |only inst/examples/dratInsert.r | 10 inst/examples/getRStudioDesktop.r | 22 - inst/examples/getRStudioServer.r | 24 - inst/examples/install2.r | 34 +- inst/examples/installGithub.r | 10 inst/examples/installRepo.r | 6 inst/examples/pnrrs.r |only inst/examples/rcc.r | 8 inst/examples/rd2md.r | 11 inst/examples/runit.r | 15 - inst/examples/testInstalled.r | 6 vignettes/littler-examples.Rmd | 131 ++++----- 23 files changed, 749 insertions(+), 405 deletions(-)
Title: Simply Create LaTeX and HTML Tables
Description: Creates HTML and LaTeX tables. Provides similar
functionality to 'xtable', but does more, with a simpler interface. Includes
a 'huxreg' function for quick creation of regression tables. Allows export to
Microsoft Word or Powerpoint using the 'officer' package.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between huxtable versions 1.1.0 dated 2017-10-20 and 1.2.0 dated 2017-12-17
DESCRIPTION | 20 +- MD5 | 46 +++--- NAMESPACE | 1 NEWS.md | 7 R/LaTeX.R | 11 + R/attributes.R | 8 - R/huxreg.R | 19 +- R/huxtable.R | 9 + R/row-col-fns.R | 12 - R/screen.R | 32 +++- R/utils.R | 47 ++++-- README.md | 12 - inst/doc/design-principles.html | 18 +- inst/doc/huxreg.html | 274 +++++++++++++++++++-------------------- inst/doc/huxtable.html | 48 +++--- man/add_footnote.Rd | 6 man/hux_logo.Rd | 2 man/huxreg.Rd | 9 - man/report_latex_dependencies.Rd | 4 man/valign.Rd | 10 - tests/testthat.R | 1 tests/testthat/functions.R | 7 tests/testthat/test-huxreg.R | 10 - tests/testthat/test-output.R | 7 24 files changed, 361 insertions(+), 259 deletions(-)
Title: Elastic Functional Data Analysis
Description: Performs alignment, PCA, and modeling of multidimensional and
unidimensional functions using the square-root velocity framework
(Srivastava et al., 2011 <arXiv:1103.3817> and
Tucker et al., 2014 <DOI:10.1016/j.csda.2012.12.001>). This framework
allows for elastic analysis of functional data through phase and
amplitude separation.
Author: J. Derek Tucker <jdtuck@sandia.gov>
Maintainer: J. Derek Tucker <jdtuck@sandia.gov>
Diff between fdasrvf versions 1.8.2 dated 2017-09-21 and 1.8.3 dated 2017-12-17
DESCRIPTION | 10 +-- MD5 | 66 ++++++++++++--------- NAMESPACE | 5 + NEWS | 7 +- R/bayesian_functions.R | 22 ++++++- R/curve_functions.R | 83 +++++++++++++++------------ R/curve_karcher_mean.R | 5 - R/curve_srvf_align.R | 27 ++++++-- R/fdasrvf-package.r | 5 - R/horizFPCA.R | 13 +++- R/multiple_align_functions.R |only R/pair_align_functions.R | 25 +++++--- R/pair_align_functions_expomap.R |only R/plot.hfpca.R | 32 ++++++++-- R/plot.vfpca.R | 51 ++++++++++++---- R/reparam_curve.R | 55 +++++++++++++---- R/time_warping.R | 4 - R/utility_functions.R | 47 +++++++++++++++ R/vertFPCA.R | 32 ++++++---- R/warp_f_gamma.R | 10 ++- R/warp_q_gamma.R | 17 +++-- README.md | 5 + man/curve_karcher_mean.Rd | 4 - man/curve_srvf_align.Rd | 4 - man/fdasrvf.Rd | 2 man/multiple_align_functions.Rd |only man/pair_align_functions.Rd | 16 +++-- man/pair_align_functions_expomap.Rd |only man/reparam_curve.Rd | 4 - man/vertFPCA.Rd | 6 + man/warp_f_gamma.Rd | 4 - man/warp_q_gamma.Rd | 4 - src/Makevars | 2 src/Makevars.win | 2 src/fdasrsf/pair_align_functions_expomap.cpp |only tests |only 36 files changed, 409 insertions(+), 160 deletions(-)
Title: Copula Based Cluster Analysis
Description: A copula based clustering algorithm that finds clusters according to the complex multivariate dependence structure of the data generating process. The updated version of the algorithm is described in Di Lascio, F.M.L. and Giannerini, S. (2016). "Clustering dependent observations with copula functions". Statistical Papers, p.1-17. <doi:10.1007/s00362-016-0822-3>.
Author: Francesca Marta Lilja Di Lascio, Simone Giannerini
Maintainer: Francesca Marta Lilja Di Lascio <marta.dilascio@unibz.it>
Diff between CoClust versions 0.3-1 dated 2015-04-15 and 0.3-2 dated 2017-12-17
ChangeLog | 9 +++- DESCRIPTION | 12 +++--- MD5 | 16 ++++---- NAMESPACE | 1 R/CoClust.R | 2 - R/Internal_functions.R | 4 +- inst/CITATION | 91 +++++++++++++++++++++++++++++++++++++++++++------ man/CoClust-class.Rd | 10 ++++- man/CoClust.Rd | 10 ++++- 9 files changed, 122 insertions(+), 33 deletions(-)
Title: Credit Risk Scorecard
Description: Makes the development of credit risk scorecard easily and efficiently by providing functions such as information value, variable filter, optimal woe binning, scorecard scaling and performance evaluation etc. The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard: Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards. Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.1.3 dated 2017-11-17 and 0.1.4 dated 2017-12-17
DESCRIPTION | 6 MD5 | 47 +- NAMESPACE | 4 NEWS.md | 6 R/condition_fun.R | 49 +- R/germancredit.R | 4 R/iv.R | 38 +- R/perf.R | 283 ++++++++------- R/scorecard.R | 135 +++---- R/splitdf.R | 42 +- R/var_filter.R | 44 +- R/woebin.R | 915 ++++++++++++++++++++++++++++++--------------------- README.md | 41 +- man/germancredit.Rd | 2 man/iv.Rd | 2 man/perf_eva.Rd | 20 - man/perf_psi.Rd | 48 +- man/scorecard.Rd | 20 - man/scorecard_ply.Rd | 20 - man/split_df.Rd | 6 man/var_filter.Rd | 2 man/woebin.Rd | 18 - man/woebin_adj.Rd |only man/woebin_plot.Rd | 16 man/woebin_ply.Rd | 16 25 files changed, 1026 insertions(+), 758 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for working with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Daniel C. Reuman [ctb],
Helen Wearing [ctb],
Simon N. Wood [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb],
Eamon O'Dea [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 1.15 dated 2017-09-19 and 1.16 dated 2017-12-17
DESCRIPTION | 20 - MD5 | 48 +-- NAMESPACE | 3 R/bake.R | 8 R/builder.R | 616 +++++++++++++++++++++--------------------- R/csnippet.R | 8 R/minim.R | 127 ++++---- R/plugins.R | 166 +++++++---- R/pomp.R | 90 ++---- R/pomp_methods.R | 8 R/sannbox.R | 254 ++++++++--------- R/simulate_pomp.R | 274 +++++++++--------- build/partial.rdb |binary data/LondonYorke.rda |binary data/ewcitmeas.rda |binary data/ewmeas.rda |binary inst/NEWS | 35 ++ inst/NEWS.Rd | 16 + inst/examples/gillespie.sir.R | 8 man/pomp.Rd | 85 +++-- man/traj_match.Rd | 85 +++-- src/init.c | 2 src/pomp_internal.h | 2 src/simulate.c | 148 +++++----- src/ssa.c | 46 ++- 25 files changed, 1116 insertions(+), 933 deletions(-)
Title: Detecting Correlated Genomic Regions
Description: Performs correlation matrix segmentation and applies a test
procedure to detect highly correlated regions in gene expression.
Author: Eleni Ioanna Delatola, Emilie Lebarbier, Tristan Mary-Huard, Francois
Radvanyi, Stephane Robin, Jennifer Wong
Maintainer: Eleni Ioanna Delatola <eldelatola@yahoo.gr>
Diff between SegCorr versions 1.1 dated 2015-11-04 and 1.2 dated 2017-12-17
DESCRIPTION | 10 +-- MD5 | 22 +++---- NAMESPACE | 4 - R/SegCorr.R | 139 +++++++++++++++++++++++------------------------- R/segmented_signal.R | 60 +++++++++----------- man/CNV_correction.Rd | 29 +++------- man/EXP_raw.Rd | 6 +- man/SNP.Rd | 4 - man/SegCorr-package.Rd | 12 ++-- man/SegCorr.Rd | 35 +++++------- man/segmentation.Rd | 12 ++-- man/segmented_signal.Rd | 21 +++---- 12 files changed, 167 insertions(+), 187 deletions(-)
Title: R Interface to 'Keras'
Description: Interface to 'Keras' <https://keras.io>, a high-level neural
networks 'API'. 'Keras' was developed with a focus on enabling fast experimentation,
supports both convolution based networks and recurrent networks (as well as
combinations of the two), and runs seamlessly on both 'CPU' and 'GPU' devices.
Author: JJ Allaire [aut, cre],
François Chollet [aut, cph],
RStudio [ctb, cph, fnd],
Google [ctb, cph, fnd],
Yuan Tang [ctb, cph],
Daniel Falbel [ctb, cph],
Wouter Van Der Bijl [ctb, cph],
Martin Studer [ctb, cph]
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between keras versions 2.0.9 dated 2017-11-16 and 2.1.2 dated 2017-12-17
DESCRIPTION | 10 MD5 | 299 +- NAMESPACE | 156 + NEWS.md | 28 R/applications.R | 10 R/backend.R |only R/datasets.R | 2 R/history.R | 44 R/layers-core.R | 2 R/losses.R | 9 R/metrics-callback.R | 3 R/metrics.R | 11 R/model-persistence.R | 15 R/model.R | 175 - R/package.R | 74 R/preprocessing.R | 21 R/reexports.R | 4 R/utils.R | 93 build/vignette.rds |binary inst/doc/backend.R | 19 inst/doc/backend.Rmd | 1076 ++++++-- inst/doc/backend.html | 2544 ++++++++++++++----- inst/doc/custom_layers.R | 4 inst/doc/custom_layers.Rmd | 4 inst/doc/custom_layers.html | 4 inst/doc/faq.R | 22 inst/doc/faq.Rmd | 39 inst/doc/faq.html | 29 inst/doc/sequential_model.R | 3 inst/doc/sequential_model.Rmd | 3 inst/doc/sequential_model.html | 3 inst/doc/training_visualization.Rmd | 2 inst/doc/why_use_keras.R |only inst/doc/why_use_keras.Rmd |only inst/doc/why_use_keras.html |only inst/python/kerastools/generator.py |only man/application_inception_resnet_v2.Rd | 4 man/application_inception_v3.Rd | 4 man/application_mobilenet.Rd | 4 man/application_resnet50.Rd | 4 man/application_vgg.Rd | 4 man/application_xception.Rd | 4 man/backend.Rd | 2 man/compile.Rd | 11 man/dataset_imdb.Rd | 2 man/evaluate.keras.engine.training.Model.Rd | 21 man/export_savedmodel.keras.engine.training.Model.Rd | 5 man/fit.Rd | 60 man/fit_generator.Rd | 28 man/flow_images_from_directory.Rd | 9 man/image_data_generator.Rd | 12 man/imagenet_preprocess_input.Rd | 2 man/k_abs.Rd |only man/k_all.Rd |only man/k_any.Rd |only man/k_arange.Rd |only man/k_argmax.Rd |only man/k_argmin.Rd |only man/k_backend.Rd |only man/k_batch_dot.Rd |only man/k_batch_flatten.Rd |only man/k_batch_get_value.Rd |only man/k_batch_normalization.Rd |only man/k_batch_set_value.Rd |only man/k_bias_add.Rd |only man/k_binary_crossentropy.Rd |only man/k_cast.Rd |only man/k_cast_to_floatx.Rd |only man/k_categorical_crossentropy.Rd |only man/k_clear_session.Rd |only man/k_clip.Rd |only man/k_concatenate.Rd |only man/k_constant.Rd |only man/k_conv1d.Rd |only man/k_conv2d.Rd |only man/k_conv2d_transpose.Rd |only man/k_conv3d.Rd |only man/k_conv3d_transpose.Rd |only man/k_cos.Rd |only man/k_count_params.Rd |only man/k_ctc_batch_cost.Rd |only man/k_ctc_decode.Rd |only man/k_ctc_label_dense_to_sparse.Rd |only man/k_cumprod.Rd |only man/k_cumsum.Rd |only man/k_depthwise_conv2d.Rd |only man/k_dot.Rd |only man/k_dropout.Rd |only man/k_dtype.Rd |only man/k_elu.Rd |only man/k_epsilon.Rd |only man/k_equal.Rd |only man/k_eval.Rd |only man/k_exp.Rd |only man/k_expand_dims.Rd |only man/k_eye.Rd |only man/k_flatten.Rd |only man/k_floatx.Rd |only man/k_foldl.Rd |only man/k_foldr.Rd |only man/k_function.Rd |only man/k_gather.Rd |only man/k_get_session.Rd |only man/k_get_uid.Rd |only man/k_get_value.Rd |only man/k_get_variable_shape.Rd |only man/k_gradients.Rd |only man/k_greater.Rd |only man/k_greater_equal.Rd |only man/k_hard_sigmoid.Rd |only man/k_identity.Rd |only man/k_image_data_format.Rd |only man/k_in_test_phase.Rd |only man/k_in_top_k.Rd |only man/k_in_train_phase.Rd |only man/k_int_shape.Rd |only man/k_is_keras_tensor.Rd |only man/k_is_placeholder.Rd |only man/k_is_sparse.Rd |only man/k_l2_normalize.Rd |only man/k_learning_phase.Rd |only man/k_less.Rd |only man/k_less_equal.Rd |only man/k_local_conv1d.Rd |only man/k_local_conv2d.Rd |only man/k_log.Rd |only man/k_logsumexp.Rd |only man/k_manual_variable_initialization.Rd |only man/k_map_fn.Rd |only man/k_max.Rd |only man/k_maximum.Rd |only man/k_mean.Rd |only man/k_min.Rd |only man/k_minimum.Rd |only man/k_moving_average_update.Rd |only man/k_ndim.Rd |only man/k_normalize_batch_in_training.Rd |only man/k_not_equal.Rd |only man/k_one_hot.Rd |only man/k_ones.Rd |only man/k_ones_like.Rd |only man/k_permute_dimensions.Rd |only man/k_placeholder.Rd |only man/k_pool2d.Rd |only man/k_pool3d.Rd |only man/k_pow.Rd |only man/k_print_tensor.Rd |only man/k_prod.Rd |only man/k_random_binomial.Rd |only man/k_random_normal.Rd |only man/k_random_normal_variable.Rd |only man/k_random_uniform.Rd |only man/k_random_uniform_variable.Rd |only man/k_relu.Rd |only man/k_repeat.Rd |only man/k_repeat_elements.Rd |only man/k_reset_uids.Rd |only man/k_reshape.Rd |only man/k_resize_images.Rd |only man/k_resize_volumes.Rd |only man/k_reverse.Rd |only man/k_rnn.Rd |only man/k_round.Rd |only man/k_separable_conv2d.Rd |only man/k_set_learning_phase.Rd |only man/k_set_value.Rd |only man/k_shape.Rd |only man/k_sigmoid.Rd |only man/k_sign.Rd |only man/k_sin.Rd |only man/k_softmax.Rd |only man/k_softplus.Rd |only man/k_softsign.Rd |only man/k_sparse_categorical_crossentropy.Rd |only man/k_spatial_2d_padding.Rd |only man/k_spatial_3d_padding.Rd |only man/k_sqrt.Rd |only man/k_square.Rd |only man/k_squeeze.Rd |only man/k_stack.Rd |only man/k_std.Rd |only man/k_stop_gradient.Rd |only man/k_sum.Rd |only man/k_switch.Rd |only man/k_tanh.Rd |only man/k_temporal_padding.Rd |only man/k_tile.Rd |only man/k_to_dense.Rd |only man/k_transpose.Rd |only man/k_truncated_normal.Rd |only man/k_update.Rd |only man/k_update_add.Rd |only man/k_update_sub.Rd |only man/k_var.Rd |only man/k_variable.Rd |only man/k_zeros.Rd |only man/k_zeros_like.Rd |only man/loss_mean_squared_error.Rd | 11 man/metric_binary_accuracy.Rd | 11 man/multi_gpu_model.Rd | 23 man/normalize.Rd | 3 man/plot.keras_training_history.Rd | 7 man/predict.keras.engine.training.Model.Rd | 3 man/reexports.Rd | 4 man/save_model_hdf5.Rd | 9 man/serialize_model.Rd | 3 man/use_implementation.Rd |only man/with_custom_object_scope.Rd |only tests/testthat/test-activations.R | 3 tests/testthat/test-backend.R | 106 tests/testthat/test-custom-layers.R | 3 tests/testthat/test-generators.R | 1 tests/testthat/test-layers.R | 6 tests/testthat/test-losses.R | 5 tests/testthat/test-metrics.R | 9 tests/testthat/test-model-persistence.R | 44 tests/testthat/test-utils.R | 41 tests/testthat/utils.R | 5 vignettes/backend.Rmd | 1076 ++++++-- vignettes/custom_layers.Rmd | 4 vignettes/faq.Rmd | 39 vignettes/images/arxiv-mentions.png |only vignettes/images/aws-logo.png |only vignettes/images/favicon.ico |only vignettes/images/google-logo.png |only vignettes/images/microsoft-logo.png |only vignettes/images/nvidia-logo.png |only vignettes/sequential_model.Rmd | 3 vignettes/training_visualization.Rmd | 2 vignettes/why_use_keras.Rmd |only 230 files changed, 4972 insertions(+), 1333 deletions(-)
Title: Training Run Tools for 'TensorFlow'
Description: Create and manage unique directories for each 'TensorFlow'
training run. Provides a unique, time stamped directory for each run
along with functions to retrieve the directory of the latest run or
latest several runs.
Author: JJ Allaire [aut, cre],
RStudio [cph, fnd],
Mike Bostock [cph] (D3 library - https://d3js.org/),
Masayuki Tanaka [cph] (C3 library - http://c3js.org/),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [cph] (jQuery library; authors:
inst/views/components/jquery-AUTHORS.txt),
Shaun Bowe [cph] (jQuery visibilityChanged plugin),
Materialize [cph] (Materizlize library - https://materializecss.com/),
Yuxi You [cph] (Vue.js library - https://vuejs.org/),
Kevin Decker [cph] (jsdiff library -
https://github.com/kpdecker/jsdiff/),
Rodrigo Fernandes [cph] (diff2html library - https://diff2html.xyz/),
Ivan Sagalaev [cph] (highlight.js library - https://highlightjs.org/),
Yauheni Pakala [cph] (highlightjs-line-numbers library)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between tfruns versions 1.0 dated 2017-10-07 and 1.1 dated 2017-12-17
DESCRIPTION | 11 - MD5 | 58 +++++---- NAMESPACE | 1 R/flags.R | 4 R/ls_runs.R | 23 +++ R/run_dir.R | 11 + R/run_metadata.R | 9 + R/training_run.R | 191 +++++++++++++++++++++++++++--- build/vignette.rds |binary inst/doc/managing.R | 2 inst/doc/managing.Rmd | 4 inst/doc/managing.html | 2 inst/doc/overview.R | 26 ---- inst/doc/overview.Rmd | 50 ------- inst/doc/overview.html | 32 ----- inst/doc/tuning.R |only inst/doc/tuning.Rmd |only inst/doc/tuning.html |only inst/views/compare_runs.html | 2 inst/views/components/dashboard.html | 12 + inst/views/components/metrics_charts.html | 65 +++++++--- inst/views/view_run.html | 15 +- man/compare_runs.Rd | 2 man/save_run_comparison.Rd | 2 man/training_run.Rd | 5 man/tuning_run.Rd |only man/write_run_metadata.Rd | 5 tests/testthat.R | 3 tests/testthat/test-flags.R | 12 + tests/testthat/test-tuning.R |only vignettes/managing.Rmd | 4 vignettes/overview.Rmd | 50 ------- vignettes/tuning.Rmd |only 33 files changed, 368 insertions(+), 233 deletions(-)
Title: R Interface to 'TensorFlow'
Description: Interface to 'TensorFlow' <https://www.tensorflow.org/>,
an open source software library for numerical computation using data
flow graphs. Nodes in the graph represent mathematical operations,
while the graph edges represent the multidimensional data arrays
(tensors) communicated between them. The flexible architecture allows
you to deploy computation to one or more 'CPUs' or 'GPUs' in a desktop,
server, or mobile device with a single 'API'. 'TensorFlow' was originally
developed by researchers and engineers working on the Google Brain Team
within Google's Machine Intelligence research organization for the
purposes of conducting machine learning and deep neural networks research,
but the system is general enough to be applicable in a wide variety
of other domains as well.
Author: JJ Allaire [aut, cre],
RStudio [cph, fnd],
Yuan Tang [aut, cph],
Dirk Eddelbuettel [ctb, cph],
Nick Golding [ctb, cph],
Google Inc. [ctb, cph] (Examples and Tutorials)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between tensorflow versions 1.4.1 dated 2017-11-16 and 1.4.2 dated 2017-12-17
DESCRIPTION | 8 ++++---- MD5 | 6 ++++-- NAMESPACE | 7 +++++++ R/eager.R |only man/tfe_enable_eager_execution.Rd |only 5 files changed, 15 insertions(+), 6 deletions(-)
Title: Dynamic String Formatting
Description: Pass named and unnamed character vectors into specified positions
in strings. This represents an attempt to replicate some of python's string
formatting.
Author: Alexander Hoyle
Maintainer: Alexander Hoyle <alexander@alexanderhoyle.com>
Diff between stringformattr versions 0.1.1 dated 2017-01-20 and 0.1.2 dated 2017-12-17
DESCRIPTION | 10 +- LICENSE | 4 - MD5 | 12 +-- R/format.R | 169 +++++++++++++++++++++----------------------- README.md | 44 +++++------ man/binary-string-concat.Rd | 5 - man/format-string.Rd | 3 7 files changed, 122 insertions(+), 125 deletions(-)
More information about stringformattr at CRAN
Permanent link
Title: Metagenomics Longitudinal Differential Abundance Method
Description: Identify time intervals of differentially abundant metagenomics features in longitudinal studies <doi:10.1145/3107411.3107429>.
Author: Ahmed Metwally, Yang Dai, Patricia Finn, David Perkins
Maintainer: Ahmed Metwally <ametwa2@uic.edu>
Diff between MetaLonDA versions 1.0.5 dated 2017-10-20 and 1.0.7 dated 2017-12-17
DESCRIPTION | 14 - LICENSE |only MD5 | 43 +-- NAMESPACE | 50 +-- R/CurveFitting.R | 562 ++++++++++++++++++++--------------------- R/Metalonda.R | 569 ++++++++++++++++++++++-------------------- R/Permutation.R | 152 +++++------ R/Visualization.R | 458 +++++++++++++++++---------------- R/metalonda_test_data.R | 4 man/areaPermutation.Rd | 69 ++--- man/curveFitting.Rd | 75 ++--- man/findSigInterval.Rd | 59 ++-- man/intervalArea.Rd | 67 ++-- man/metalonda.Rd | 118 ++++---- man/metalondaAll.Rd | 111 ++++---- man/metalonda_test_data.Rd | 29 +- man/normalize.Rd | 39 +- man/permutation.Rd | 83 +++--- man/visualizeARHistogram.Rd | 43 +-- man/visualizeArea.Rd | 65 ++-- man/visualizeFeature.Rd | 71 ++--- man/visualizeFeatureSpline.Rd | 55 +--- man/visualizeTimeIntervals.Rd | 42 +-- 23 files changed, 1409 insertions(+), 1369 deletions(-)