Title: Utilities for Working with Air Quality Monitoring Data
Description: Utilities for working with air quality monitoring data
with a focus on small particulates (PM2.5) generated by wildfire
smoke. Functions are provided for downloading available data from
the United States Environmental Protection Agency (US EPA) and
it's AirNow air quality site. Additional sources of PM2.5 data
made accessible by the package include: AIRSIS (password protected),
the Western Regional Climate Center (WRCC) and the open source site OpenAQ.
Author: Jonathan Callahan [aut, cre],
Rohan Aras [aut],
Zach Dingels [aut],
Jon Hagg [aut],
Jimin Kim [aut],
Helen Miller [aut],
Rex Thompson [aut],
Alice Yang [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between PWFSLSmoke versions 0.99.33 dated 2017-12-12 and 1.0.3 dated 2018-01-04
PWFSLSmoke-0.99.33/PWFSLSmoke/R/airnow_downloadData.R |only PWFSLSmoke-0.99.33/PWFSLSmoke/data/CarmelValley.RData |only PWFSLSmoke-0.99.33/PWFSLSmoke/man/CarmelValley.Rd |only PWFSLSmoke-0.99.33/PWFSLSmoke/man/airnow_downloadData.Rd |only PWFSLSmoke-0.99.33/PWFSLSmoke/man/openaq_assignStateCode.Rd |only PWFSLSmoke-0.99.33/PWFSLSmoke/man/openaq_createDataDataframes.Rd |only PWFSLSmoke-0.99.33/PWFSLSmoke/man/openaq_createMetaDataframes.Rd |only PWFSLSmoke-0.99.33/PWFSLSmoke/man/openaq_downloadData.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/DESCRIPTION | 9 PWFSLSmoke-1.0.3/PWFSLSmoke/MD5 | 338 +++++----- PWFSLSmoke-1.0.3/PWFSLSmoke/NAMESPACE | 19 PWFSLSmoke-1.0.3/PWFSLSmoke/R/PWFSLSmoke.R | 47 - PWFSLSmoke-1.0.3/PWFSLSmoke/R/addAQILines.R | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/R/addClustering.R | 86 +- PWFSLSmoke-1.0.3/PWFSLSmoke/R/addGoogleAddress.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/addGoogleElevation.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/addGoogleMetadata.R | 15 PWFSLSmoke-1.0.3/PWFSLSmoke/R/addMazamaMetadata.R | 11 PWFSLSmoke-1.0.3/PWFSLSmoke/R/addUSGSElevation.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/airnow_createDataDataframes.R | 61 + PWFSLSmoke-1.0.3/PWFSLSmoke/R/airnow_createMetaDataframes.R | 227 +++++- PWFSLSmoke-1.0.3/PWFSLSmoke/R/airnow_createMonitorObjects.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/airnow_downloadHourlyData.R | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/R/airnow_downloadParseData.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/airnow_downloadSites.R | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/R/airnow_load.R | 7 PWFSLSmoke-1.0.3/PWFSLSmoke/R/airnow_loadLatest.R | 3 PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsisDump_createMonitorObject.R | 24 PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsisDump_parseData.R | 30 PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_BAM1020QualityControl.R | 146 ++-- PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_EBAMQualityControl.R | 158 ++-- PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_ESAMQualityControl.R | 142 ++-- PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_availableUnits.R | 44 - PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_createDataDataframe.R | 40 - PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_createMetaDataframe.R | 191 ++--- PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_createMonitorObject.R | 50 + PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_createRawDataframe.R | 35 - PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_currentStatus.R | 50 - PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_downloadData.R | 15 PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_identifyMonitorType.R | 58 + PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_loadLatest.R | 5 PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_parseData.R | 46 - PWFSLSmoke-1.0.3/PWFSLSmoke/R/airsis_qualityControl.R | 58 + PWFSLSmoke-1.0.3/PWFSLSmoke/R/createEmptyMetaDataframe.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/epa_createDataDataframe.R | 18 PWFSLSmoke-1.0.3/PWFSLSmoke/R/epa_createMetaDataframe.R | 133 ++- PWFSLSmoke-1.0.3/PWFSLSmoke/R/epa_createMonitorObject.R | 77 -- PWFSLSmoke-1.0.3/PWFSLSmoke/R/epa_downloadData.R | 121 --- PWFSLSmoke-1.0.3/PWFSLSmoke/R/epa_parseData.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/initializeMazamaSpatialUtils.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorDygraph.R | 13 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorEsriMap.R | 7 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorGoogleMap.R | 7 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorLeaflet.R | 12 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorMap.R | 5 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorMap_performance.R | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorPlot_dailyBarplot.R | 9 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorPlot_hourlyBarplot.R | 7 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorPlot_rollingMean.R | 9 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorPlot_timeOfDaySpaghetti.R | 7 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitorPlot_timeseries.R | 32 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_aqi.R | 8 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_collapse.R | 10 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_combine.R | 31 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_dailyStatistic.R | 103 +-- PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_dailyThreshold.R | 13 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_distance.R | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_isEmpty.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_isolate.R | 11 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_join.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_nowcast.R | 9 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_replaceData.R | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_rollingMean.R | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_scaleData.R | 5 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_subset.R | 37 - PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_subsetBy.R | 11 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_subsetByDistance.R | 14 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_subsetData.R | 26 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_subsetMeta.R | 29 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_timeAverage.R | 5 PWFSLSmoke-1.0.3/PWFSLSmoke/R/monitor_trim.R | 5 PWFSLSmoke-1.0.3/PWFSLSmoke/R/openaq_assignStateCode.R | 140 ++-- PWFSLSmoke-1.0.3/PWFSLSmoke/R/openaq_createDataDataframes.R | 186 ++--- PWFSLSmoke-1.0.3/PWFSLSmoke/R/openaq_createMetaDataframes.R | 232 +++--- PWFSLSmoke-1.0.3/PWFSLSmoke/R/openaq_downloadData.R | 170 ++--- PWFSLSmoke-1.0.3/PWFSLSmoke/R/skill_ROC.R | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/R/skill_ROCPlot.R | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/R/timeInfo.R | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/R/upgradeMeta_v1.0.R |only PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrccDump_createMonitorObject.R | 24 PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_EBAMQualityControl.R | 164 ++-- PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_ESAMQualityControl.R | 164 ++-- PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_createDataDataframe.R | 50 - PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_createMetaDataframe.R | 190 ++--- PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_createMonitorObject.R | 59 + PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_createRawDataframe.R | 32 PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_downloadData.R | 18 PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_loadLatest.R | 5 PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_parseData.R | 22 PWFSLSmoke-1.0.3/PWFSLSmoke/R/wrcc_qualityControl.R | 43 - PWFSLSmoke-1.0.3/PWFSLSmoke/README.md | 42 - PWFSLSmoke-1.0.3/PWFSLSmoke/data/Carmel_Valley.RData |only PWFSLSmoke-1.0.3/PWFSLSmoke/data/Northwest_Megafires.RData |binary PWFSLSmoke-1.0.3/PWFSLSmoke/inst/doc/Data_Model.R | 22 PWFSLSmoke-1.0.3/PWFSLSmoke/inst/doc/Data_Model.Rmd | 75 +- PWFSLSmoke-1.0.3/PWFSLSmoke/inst/doc/Data_Model.html | 194 +++-- PWFSLSmoke-1.0.3/PWFSLSmoke/inst/doc/Maps_and_Timeseries_Plots.R | 30 PWFSLSmoke-1.0.3/PWFSLSmoke/inst/doc/Maps_and_Timeseries_Plots.Rmd | 38 - PWFSLSmoke-1.0.3/PWFSLSmoke/inst/doc/Maps_and_Timeseries_Plots.html | 58 - PWFSLSmoke-1.0.3/PWFSLSmoke/inst/doc/NowCast.R | 34 - PWFSLSmoke-1.0.3/PWFSLSmoke/inst/doc/NowCast.Rmd | 68 -- PWFSLSmoke-1.0.3/PWFSLSmoke/inst/doc/NowCast.html | 264 +++---- PWFSLSmoke-1.0.3/PWFSLSmoke/man/AIRSIS.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/CONUS.Rd | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/man/Carmel_Valley.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/US_52.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/WRCC.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/addAQILines.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/addClustering.Rd | 10 PWFSLSmoke-1.0.3/PWFSLSmoke/man/addGoogleAddress.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/addGoogleElevation.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/addMazamaMetadata.Rd | 8 PWFSLSmoke-1.0.3/PWFSLSmoke/man/addUSGSElevation.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/airnow_createDataDataframes.Rd | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airnow_createMetaDataframes.Rd | 13 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airnow_createMonitorObjects.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/airnow_downloadHourlyData.Rd | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airnow_downloadParseData.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/airnow_downloadSites.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airnow_load.Rd | 5 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsisDump_parseData.Rd | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_BAM1020QualityControl.Rd | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_EBAMQualityControl.Rd | 8 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_ESAMQualityControl.Rd | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_availableUnits.Rd | 7 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_createDataDataframe.Rd | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_createMetaDataframe.Rd | 32 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_createMonitorObject.Rd | 31 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_createRawDataframe.Rd | 12 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_downloadData.Rd | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_parseData.Rd | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/man/airsis_qualityControl.Rd | 24 PWFSLSmoke-1.0.3/PWFSLSmoke/man/createEmptyMetaDataframe.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/epa_createDataDataframe.Rd | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/man/epa_createMetaDataframe.Rd | 29 PWFSLSmoke-1.0.3/PWFSLSmoke/man/epa_createMonitorObject.Rd | 28 PWFSLSmoke-1.0.3/PWFSLSmoke/man/epa_downloadData.Rd | 69 -- PWFSLSmoke-1.0.3/PWFSLSmoke/man/epa_parseData.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/initializeMazamaSpatialUtils.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitorEsriMap.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitorGoogleMap.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitorMap_performance.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitorPlot_dailyBarplot.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitorPlot_hourlyBarplot.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitorPlot_rollingMean.Rd | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitorPlot_timeOfDaySpaghetti.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitorPlot_timeseries.Rd | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_dailyStatistic.Rd | 28 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_dailyThreshold.Rd | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_isEmpty.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_join.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_nowcast.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_replaceData.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_rollingMean.Rd | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_scaleData.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_subset.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_subsetBy.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_timeAverage.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/monitor_trim.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/skill_ROC.Rd | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/man/skill_ROCPlot.Rd | 4 PWFSLSmoke-1.0.3/PWFSLSmoke/man/timeInfo.Rd | 2 PWFSLSmoke-1.0.3/PWFSLSmoke/man/upgradeMeta_v1.0.Rd |only PWFSLSmoke-1.0.3/PWFSLSmoke/man/wrcc_EBAMQualityControl.Rd | 8 PWFSLSmoke-1.0.3/PWFSLSmoke/man/wrcc_ESAMQualityControl.Rd | 8 PWFSLSmoke-1.0.3/PWFSLSmoke/man/wrcc_createDataDataframe.Rd | 10 PWFSLSmoke-1.0.3/PWFSLSmoke/man/wrcc_createMetaDataframe.Rd | 27 PWFSLSmoke-1.0.3/PWFSLSmoke/man/wrcc_createMonitorObject.Rd | 29 PWFSLSmoke-1.0.3/PWFSLSmoke/man/wrcc_createRawDataframe.Rd | 12 PWFSLSmoke-1.0.3/PWFSLSmoke/man/wrcc_downloadData.Rd | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/man/wrcc_parseData.Rd | 6 PWFSLSmoke-1.0.3/PWFSLSmoke/man/wrcc_qualityControl.Rd | 10 PWFSLSmoke-1.0.3/PWFSLSmoke/vignettes/Data_Model.Rmd | 75 +- PWFSLSmoke-1.0.3/PWFSLSmoke/vignettes/Maps_and_Timeseries_Plots.Rmd | 38 - PWFSLSmoke-1.0.3/PWFSLSmoke/vignettes/Maps_and_Timeseries_Plots_files |only PWFSLSmoke-1.0.3/PWFSLSmoke/vignettes/NowCast.Rmd | 68 -- 186 files changed, 3231 insertions(+), 2533 deletions(-)
Title: Kernel for 'Jupyter'
Description: Provides a full implementation of the 'Jupyter' <http://jupyter.org/> messaging protocol in C++ by leveraging 'Rcpp' and 'Xeus' <https://github.com/QuantStack/xeus>.
'Jupyter' supplies an interactive computing environment and a messaging protocol defined over 'ZeroMQ' for multiple programming languages. This package implements
the 'Jupyter' kernel interface so that 'R' is exposed to this interactive computing environment. 'ZeroMQ' functionality is provided by the 'pbdZMQ' package.
'Xeus' is a C++ library that facilitates the implementation of kernels for 'Jupyter'. Additionally, 'Xeus' provides an interface to libraries that exist in the 'Jupyter' ecosystem for building widgets,
plotting, and more <https://blog.jupyter.org/interactive-workflows-for-c-with-jupyter-fe9b54227d92>. 'JuniperKernel' uses 'Xeus' as a library for the 'Jupyter' messaging protocol.
Author: Spencer Aiello [aut, cre, cph],
Wei-Chen Chen [ctb],
Stephan Brumme [cph],
Jake Luciani [cph],
Tony Plate [cph],
Matthieu Decorde [cph],
RStudio (Hadley Wickham) [cph],
Sylvain Corlay [cph],
Johan Mabille [cph],
Niels Lohmann [cph]
Maintainer: Spencer Aiello <spnrpa@gmail.com>
Diff between JuniperKernel versions 1.0.0.0 dated 2017-12-19 and 1.2.0.0 dated 2018-01-04
JuniperKernel-1.0.0.0/JuniperKernel/inst/include/json.hpp |only JuniperKernel-1.0.0.0/JuniperKernel/inst/include/zmq.h |only JuniperKernel-1.0.0.0/JuniperKernel/inst/include/zmq.hpp |only JuniperKernel-1.0.0.0/JuniperKernel/inst/include/zmq_addon.hpp |only JuniperKernel-1.0.0.0/JuniperKernel/inst/include/zmq_utils.h |only JuniperKernel-1.0.0.0/JuniperKernel/inst/pbdZMQ-0.2-6.zip |only JuniperKernel-1.0.0.0/JuniperKernel/inst/pbdzmq_copyright |only JuniperKernel-1.0.0.0/JuniperKernel/inst/zeromq-4.2.2.tar.gz |only JuniperKernel-1.0.0.0/JuniperKernel/inst/zmq_copyright |only JuniperKernel-1.2.0.0/JuniperKernel/DESCRIPTION | 24 JuniperKernel-1.2.0.0/JuniperKernel/MD5 | 101 JuniperKernel-1.2.0.0/JuniperKernel/NAMESPACE | 1 JuniperKernel-1.2.0.0/JuniperKernel/NEWS.md |only JuniperKernel-1.2.0.0/JuniperKernel/R/RcppExports.R | 20 JuniperKernel-1.2.0.0/JuniperKernel/R/booter.R | 3 JuniperKernel-1.2.0.0/JuniperKernel/R/complete_request.R | 3 JuniperKernel-1.2.0.0/JuniperKernel/R/is_complete_request.R | 4 JuniperKernel-1.2.0.0/JuniperKernel/R/juniper.R | 3 JuniperKernel-1.2.0.0/JuniperKernel/R/zzz.R | 2 JuniperKernel-1.2.0.0/JuniperKernel/configure | 38 JuniperKernel-1.2.0.0/JuniperKernel/inst/COPYRIGHTS | 27 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/jclient |only JuniperKernel-1.2.0.0/JuniperKernel/inst/include/juniper/conf.h | 2 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/juniper/gdevice.h | 2 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/juniper/jmessage.h | 15 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/juniper/juniper.h | 14 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/juniper/requests.h | 25 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/juniper/utils.h | 20 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/juniper/xbridge.h | 2 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xeus/nl_json.hpp |15116 +++++----- JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xeus/xeus.hpp | 4 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xany.hpp | 4 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xbase64.hpp | 11 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xbasic_fixed_string.hpp | 33 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xclosure.hpp | 6 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xdynamic_bitset.hpp | 39 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xfunctional.hpp |only JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xhash.hpp | 78 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xiterator_base.hpp | 136 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xmeta_utils.hpp | 53 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xoptional.hpp | 440 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xoptional_sequence.hpp | 6 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xtl_config.hpp | 2 JuniperKernel-1.2.0.0/JuniperKernel/inst/include/xtl/xtype_traits.hpp | 57 JuniperKernel-1.2.0.0/JuniperKernel/inst/runits |only JuniperKernel-1.2.0.0/JuniperKernel/src/Makevars.in | 4 JuniperKernel-1.2.0.0/JuniperKernel/src/Makevars.win | 37 JuniperKernel-1.2.0.0/JuniperKernel/src/RcppExports.cpp | 63 JuniperKernel-1.2.0.0/JuniperKernel/src/install.libs.R |only JuniperKernel-1.2.0.0/JuniperKernel/src/juniper.cpp | 54 JuniperKernel-1.2.0.0/JuniperKernel/tests |only 51 files changed, 9403 insertions(+), 7046 deletions(-)
Title: Data Preprocessing, Binning for Classification and Regression
Description: Various supervised and unsupervised binning tools
including using entropy, recursive partition methods
and clustering.
Author: Chapman Siu
Maintainer: Chapman Siu <chpmn.siu@gmail.com>
Diff between binst versions 0.2.0 dated 2016-06-17 and 0.2.1 dated 2018-01-04
DESCRIPTION | 12 ++++----- MD5 | 6 ++-- R/binst.R | 61 +---------------------------------------------- tests/testthat/test_dt.R | 4 +-- 4 files changed, 13 insertions(+), 70 deletions(-)
Title: Density Estimation for Grouped Data
Description: Functions for density estimation based on
grouped data, and next-generation gene expression
data.
Author: Bin Wang <bwang@southalabama.edu>.
Maintainer: Bin Wang <bwang@southalabama.edu>
Diff between bda versions 5.1.6 dated 2015-07-29 and 10.1.9 dated 2018-01-04
bda-10.1.9/bda/DESCRIPTION | 15 +- bda-10.1.9/bda/MD5 | 46 ++++-- bda-10.1.9/bda/NAMESPACE | 41 ++++- bda-10.1.9/bda/PORTING | 30 ++++ bda-10.1.9/bda/R/EDA.R | 194 ++++++++++++++++++++++++--- bda-10.1.9/bda/R/EIVLPReg.R |only bda-10.1.9/bda/R/MetaMeanTest.R |only bda-10.1.9/bda/R/NGS.R |only bda-10.1.9/bda/R/compare.R |only bda-10.1.9/bda/R/lpsmooth.R | 263 +++++++++++++++++++++++++++---------- bda-10.1.9/bda/R/lt50.R | 10 - bda-10.1.9/bda/R/mixnorm.R | 13 + bda-10.1.9/bda/R/mixture.R |only bda-10.1.9/bda/man/DEGTest.Rd |only bda-10.1.9/bda/man/Dagum.Rd | 6 bda-10.1.9/bda/man/MetaMeanTest.Rd |only bda-10.1.9/bda/man/NGSNormalize.Rd |only bda-10.1.9/bda/man/NGSPermTest.Rd |only bda-10.1.9/bda/man/bde.Rd | 5 bda-10.1.9/bda/man/binNGS.Rd |only bda-10.1.9/bda/man/compare.Rd |only bda-10.1.9/bda/man/eda.Rd | 9 - bda-10.1.9/bda/man/fitLogNormal.Rd |only bda-10.1.9/bda/man/fitNGS.Rd |only bda-10.1.9/bda/man/lpsmooth.Rd | 14 + bda-10.1.9/bda/man/lpsvariance.Rd |only bda-10.1.9/bda/man/lt50.logit.Rd | 6 bda-10.1.9/bda/man/nmixCopula.Rd |only bda-10.1.9/bda/src/Ckernel.c | 37 +++++ bda-10.1.9/bda/src/Fkernel.f | 104 ++++++++++++++ bda-10.1.9/bda/src/init.c | 13 + bda-5.1.6/bda/R/bemmix.R |only 32 files changed, 668 insertions(+), 138 deletions(-)
Title: Financial Market Date Calculations
Description: Implements common date calculations relevant for specifying
the economic nature of financial market contracts that are typically defined
by International Swap Dealer Association (ISDA, <http://www2.isda.org>) legal
documentation. This includes methods to check whether dates are business
days in certain locales, functions to adjust and shift dates and time length
(or day counter) calculations.
Author: Imanuel Costigan [aut, cre]
Maintainer: Imanuel Costigan <i.costigan@me.com>
Diff between fmdates versions 0.1.3 dated 2017-10-08 and 0.1.4 dated 2018-01-04
DESCRIPTION | 25 +++---- MD5 | 16 ++-- NEWS | 6 + R/calendar-methods.R | 182 +++++++++++++++++++++++++-------------------------- README.md | 11 --- build/vignette.rds |binary inst/doc/dates.Rmd | 2 inst/doc/dates.html | 20 +++-- vignettes/dates.Rmd | 2 9 files changed, 134 insertions(+), 130 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete gamma, discrete Laplace,
discrete normal, discrete uniform, discrete Weibull, Frechet,
gamma-Poisson, generalized extreme value, Gompertz,
generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t,
Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy,
Laplace, location-scale t, logarithmic, Lomax, multivariate
hypergeometric, multinomial, negative hypergeometric,
non-standard beta, normal mixture, Poisson mixture, Pareto,
power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam,
slash, triangular, truncated binomial, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zero-inflated negative binomial, zero-inflated Poisson.
Author: Tymoteusz Wolodzko
Maintainer: Tymoteusz Wolodzko <twolodzko+extraDistr@gmail.com>
Diff between extraDistr versions 1.8.7 dated 2017-09-22 and 1.8.8 dated 2018-01-04
extraDistr-1.8.7/extraDistr/R/tuckey-lambda-distribution.R |only extraDistr-1.8.7/extraDistr/man/TuckeyLambda.Rd |only extraDistr-1.8.7/extraDistr/man/extraDistr-deprecated.Rd |only extraDistr-1.8.8/extraDistr/DESCRIPTION | 13 extraDistr-1.8.8/extraDistr/MD5 | 158 +++++----- extraDistr-1.8.8/extraDistr/NAMESPACE | 4 extraDistr-1.8.8/extraDistr/NEWS.md | 13 extraDistr-1.8.8/extraDistr/R/extraDistr-deprecated.R | 58 --- extraDistr-1.8.8/extraDistr/R/gev-distribution.R | 14 extraDistr-1.8.8/extraDistr/R/gpd-distribution.R | 2 extraDistr-1.8.8/extraDistr/R/huber-distribution.R | 13 extraDistr-1.8.8/extraDistr/R/inverse-gamma-distribution.R | 4 extraDistr-1.8.8/extraDistr/R/lomax-distribution.R | 4 extraDistr-1.8.8/extraDistr/R/power-distribution.R | 2 extraDistr-1.8.8/extraDistr/R/tukey-lambda-distribution.R |only extraDistr-1.8.8/extraDistr/man/GEV.Rd | 14 extraDistr-1.8.8/extraDistr/man/GPD.Rd | 2 extraDistr-1.8.8/extraDistr/man/Huber.Rd | 14 extraDistr-1.8.8/extraDistr/man/InvGamma.Rd | 4 extraDistr-1.8.8/extraDistr/man/Lomax.Rd | 4 extraDistr-1.8.8/extraDistr/man/PowerDist.Rd | 2 extraDistr-1.8.8/extraDistr/man/TukeyLambda.Rd |only extraDistr-1.8.8/extraDistr/src/bernoulli-distribution.cpp | 6 extraDistr-1.8.8/extraDistr/src/beta-binomial-distribution.cpp | 22 - extraDistr-1.8.8/extraDistr/src/beta-negative-binomial-distribution.cpp | 26 - extraDistr-1.8.8/extraDistr/src/beta-prime-distribution.cpp | 34 -- extraDistr-1.8.8/extraDistr/src/bhattacharjee-distribution.cpp | 4 extraDistr-1.8.8/extraDistr/src/birnbaum-saunders-distribution.cpp | 25 + extraDistr-1.8.8/extraDistr/src/bivariate-normal-distribution.cpp | 2 extraDistr-1.8.8/extraDistr/src/bivariate-poisson-distribution.cpp | 55 ++- extraDistr-1.8.8/extraDistr/src/categorical-distribution-lp.cpp | 4 extraDistr-1.8.8/extraDistr/src/categorical-distribution.cpp | 12 extraDistr-1.8.8/extraDistr/src/dirichlet-distribution.cpp | 7 extraDistr-1.8.8/extraDistr/src/dirichlet-multinomial-distribution.cpp | 2 extraDistr-1.8.8/extraDistr/src/discrete-gamma-distribution.cpp | 2 extraDistr-1.8.8/extraDistr/src/discrete-laplace-distribution.cpp | 34 +- extraDistr-1.8.8/extraDistr/src/discrete-normal-distribution.cpp | 2 extraDistr-1.8.8/extraDistr/src/discrete-uniform-distribution.cpp | 6 extraDistr-1.8.8/extraDistr/src/discrete-weibull-distribution.cpp | 9 extraDistr-1.8.8/extraDistr/src/frechet-distribution.cpp | 26 + extraDistr-1.8.8/extraDistr/src/gamma-poisson-distribution.cpp | 15 extraDistr-1.8.8/extraDistr/src/gev-distribution.cpp | 60 ++- extraDistr-1.8.8/extraDistr/src/gompertz-distribution.cpp | 28 - extraDistr-1.8.8/extraDistr/src/gpd-distribution.cpp | 72 +++- extraDistr-1.8.8/extraDistr/src/gumbel-distribution.cpp | 28 + extraDistr-1.8.8/extraDistr/src/half-cauchy-distribution.cpp | 24 + extraDistr-1.8.8/extraDistr/src/half-normal-distribution.cpp | 21 - extraDistr-1.8.8/extraDistr/src/half-t-distribution.cpp | 22 - extraDistr-1.8.8/extraDistr/src/huber-distribution.cpp | 31 + extraDistr-1.8.8/extraDistr/src/inverse-gamma-distribution.cpp | 25 + extraDistr-1.8.8/extraDistr/src/kumaraswamy-distribution.cpp | 22 - extraDistr-1.8.8/extraDistr/src/laplace-distribution.cpp | 25 + extraDistr-1.8.8/extraDistr/src/location-scale-t-distribution.cpp | 6 extraDistr-1.8.8/extraDistr/src/logarithmic-series-distribution.cpp | 42 +- extraDistr-1.8.8/extraDistr/src/lomax-distribution.cpp | 26 - extraDistr-1.8.8/extraDistr/src/mixture-of-normal-distributions.cpp | 66 +++- extraDistr-1.8.8/extraDistr/src/mixture-of-poisson-distributions.cpp | 64 +++- extraDistr-1.8.8/extraDistr/src/multinomial-distribution.cpp | 2 extraDistr-1.8.8/extraDistr/src/multivariate-hypergeometric-distribution.cpp | 2 extraDistr-1.8.8/extraDistr/src/negative-hypergeometric-distribution.cpp | 21 + extraDistr-1.8.8/extraDistr/src/non-standart-beta-distribution.cpp | 6 extraDistr-1.8.8/extraDistr/src/pareto-distribution.cpp | 20 - extraDistr-1.8.8/extraDistr/src/power-distribution.cpp | 70 ++-- extraDistr-1.8.8/extraDistr/src/proportion-distribution.cpp | 6 extraDistr-1.8.8/extraDistr/src/rayleigh-distribution.cpp | 28 + extraDistr-1.8.8/extraDistr/src/shared.h | 7 extraDistr-1.8.8/extraDistr/src/shared_inline.h | 4 extraDistr-1.8.8/extraDistr/src/shifted-gompertz-distribution.cpp | 33 +- extraDistr-1.8.8/extraDistr/src/skellam-distribution.cpp | 2 extraDistr-1.8.8/extraDistr/src/slash-distribution.cpp | 7 extraDistr-1.8.8/extraDistr/src/triangular-distribution.cpp | 33 +- extraDistr-1.8.8/extraDistr/src/truncated-binomial-distribution.cpp | 24 - extraDistr-1.8.8/extraDistr/src/truncated-normal-distribution.cpp | 6 extraDistr-1.8.8/extraDistr/src/truncated-poisson-distribution.cpp | 24 - extraDistr-1.8.8/extraDistr/src/tuckey-lambda-distribution.cpp | 2 extraDistr-1.8.8/extraDistr/src/wald-distribution.cpp | 6 extraDistr-1.8.8/extraDistr/src/zero-inflated-binomial-distribution.cpp | 21 + extraDistr-1.8.8/extraDistr/src/zero-inflated-negative-binomial-distribution.cpp | 22 + extraDistr-1.8.8/extraDistr/src/zero-inflated-poisson-distribution.cpp | 22 + extraDistr-1.8.8/extraDistr/tests/testthat/helper_pure_r_implementations.R |only extraDistr-1.8.8/extraDistr/tests/testthat/test-log-probs.R |only extraDistr-1.8.8/extraDistr/tests/testthat/test-misc.R | 9 extraDistr-1.8.8/extraDistr/tests/testthat/test-probabilities.R | 6 extraDistr-1.8.8/extraDistr/tests/testthat/test-pure-r-benchmarks.R |only 84 files changed, 955 insertions(+), 608 deletions(-)
Title: Categorical Regression Splines
Description: Regression splines that handle a mix of continuous and categorical (discrete) data often encountered in applied settings. I would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <http://www.nserc-crsng.gc.ca>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <http://www.sshrc-crsh.gc.ca>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <https://www.sharcnet.ca>).
Author: Jeffrey S. Racine [aut, cre],
Zhenghua Nie [aut],
Brian D. Ripley [ctb] (stepCV.R)
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between crs versions 0.15-29 dated 2017-10-31 and 0.15-30 dated 2018-01-04
CHANGELOG | 13 +++++++++++-- DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NAMESPACE | 2 +- R/crs.R | 4 ++-- R/np.regression.glp.R | 8 ++++---- R/util.R | 9 --------- R/zzz.R | 2 +- build/vignette.rds |binary inst/doc/crs.pdf |binary inst/doc/crs_faq.Rnw | 15 +++++++++++++-- inst/doc/crs_faq.pdf |binary inst/doc/spline_primer.pdf |binary vignettes/crs_faq.Rnw | 15 +++++++++++++-- 14 files changed, 62 insertions(+), 40 deletions(-)
Title: Exact Test from the Combinations of Mutually Exclusive
Alterations (CoMEt) Algorithm
Description: An algorithm for identifying combinations of mutually exclusive alterations in cancer genomes. CoMEt represents the mutations in a set M of k genes with a 2^k dimensional contingency table, and then computes the tail probability of observing T(M) exclusive alterations using an exact statistical test.
Author: Max Leiserson [aut, cre],
Hsin-Ta Wu [aut],
Fabio Vandin [ctb],
Vivian Hsiao [ctb],
Benjamin Raphael [ctb]
Maintainer: Max Leiserson <mdml@cs.umd.edu>
Diff between cometExactTest versions 0.1.3 dated 2015-10-31 and 0.1.4 dated 2018-01-04
DESCRIPTION | 14 ++++----- LICENSE | 4 +- MD5 | 11 +++---- NAMESPACE | 2 - R/cometexacttest.R | 70 +++++++++++++++++++++++----------------------- src/cometexacttest.c | 48 +++++++++++++++---------------- src/cometexacttest_init.c |only 7 files changed, 76 insertions(+), 73 deletions(-)
More information about cometExactTest at CRAN
Permanent link
Title: Interface to 'Digital Ocean'
Description: Provides a set of functions for interacting with the 'Digital
Ocean' API at <https://developers.digitalocean.com/documentation/v2>, including
creating images, destroying them, rebooting, getting details on regions, and
available images.
Author: Scott Chamberlain [aut, cre],
Hadley Wickham [aut],
Winston Chang [aut],
Bob Rudis [ctb],
RStudio [cph]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between analogsea versions 0.5.0 dated 2016-11-11 and 0.6.0 dated 2018-01-04
analogsea-0.5.0/analogsea/data |only analogsea-0.5.0/analogsea/man/tag_rename.Rd |only analogsea-0.6.0/analogsea/DESCRIPTION | 14 - analogsea-0.6.0/analogsea/LICENSE | 2 analogsea-0.6.0/analogsea/MD5 | 162 ++++++++--------- analogsea-0.6.0/analogsea/NAMESPACE | 26 +- analogsea-0.6.0/analogsea/NEWS.md | 85 ++++++-- analogsea-0.6.0/analogsea/R/cloud_config.R | 2 analogsea-0.6.0/analogsea/R/data.R |only analogsea-0.6.0/analogsea/R/debian.R | 3 analogsea-0.6.0/analogsea/R/deprecated_defunct.R |only analogsea-0.6.0/analogsea/R/docklet.R | 44 +++- analogsea-0.6.0/analogsea/R/domain-records.R | 79 ++++++-- analogsea-0.6.0/analogsea/R/droplet-actions.R | 5 analogsea-0.6.0/analogsea/R/droplet_execute.R | 2 analogsea-0.6.0/analogsea/R/droplets_create.R | 2 analogsea-0.6.0/analogsea/R/images.R | 2 analogsea-0.6.0/analogsea/R/keys.R | 39 ++-- analogsea-0.6.0/analogsea/R/onload.R | 1 analogsea-0.6.0/analogsea/R/spaces.R |only analogsea-0.6.0/analogsea/R/tags.R | 21 +- analogsea-0.6.0/analogsea/R/volume-actions.R | 2 analogsea-0.6.0/analogsea/README.md | 2 analogsea-0.6.0/analogsea/build/vignette.rds |binary analogsea-0.6.0/analogsea/man/account.Rd | 1 analogsea-0.6.0/analogsea/man/action.Rd | 1 analogsea-0.6.0/analogsea/man/actions.Rd | 3 analogsea-0.6.0/analogsea/man/adjectives.Rd | 1 analogsea-0.6.0/analogsea/man/analogsea-defunct.Rd |only analogsea-0.6.0/analogsea/man/analogsea-deprecated.Rd |only analogsea-0.6.0/analogsea/man/analogsea-package.Rd | 4 analogsea-0.6.0/analogsea/man/cloud_config.Rd | 3 analogsea-0.6.0/analogsea/man/debian.Rd | 5 analogsea-0.6.0/analogsea/man/do_oauth.Rd | 1 analogsea-0.6.0/analogsea/man/do_options.Rd | 1 analogsea-0.6.0/analogsea/man/docklet_create.Rd | 54 ++++- analogsea-0.6.0/analogsea/man/docklets_create.Rd | 6 analogsea-0.6.0/analogsea/man/domain_create.Rd | 1 analogsea-0.6.0/analogsea/man/domain_records.Rd | 62 ++++-- analogsea-0.6.0/analogsea/man/domains.Rd | 3 analogsea-0.6.0/analogsea/man/droplet.Rd | 3 analogsea-0.6.0/analogsea/man/droplet_action.Rd | 13 - analogsea-0.6.0/analogsea/man/droplet_actions.Rd | 1 analogsea-0.6.0/analogsea/man/droplet_create.Rd | 9 analogsea-0.6.0/analogsea/man/droplet_delete.Rd | 1 analogsea-0.6.0/analogsea/man/droplet_do_actions.Rd | 1 analogsea-0.6.0/analogsea/man/droplet_execute.Rd | 3 analogsea-0.6.0/analogsea/man/droplet_freeze.Rd | 1 analogsea-0.6.0/analogsea/man/droplet_kernels_list.Rd | 1 analogsea-0.6.0/analogsea/man/droplet_modify.Rd | 5 analogsea-0.6.0/analogsea/man/droplet_reuse.Rd | 1 analogsea-0.6.0/analogsea/man/droplet_snapshot.Rd | 5 analogsea-0.6.0/analogsea/man/droplet_ssh.Rd | 3 analogsea-0.6.0/analogsea/man/droplet_upgrades_list.Rd | 1 analogsea-0.6.0/analogsea/man/droplet_wait.Rd | 1 analogsea-0.6.0/analogsea/man/droplets.Rd | 1 analogsea-0.6.0/analogsea/man/droplets_cost.Rd | 1 analogsea-0.6.0/analogsea/man/droplets_create.Rd | 6 analogsea-0.6.0/analogsea/man/httr-verbs.Rd | 7 analogsea-0.6.0/analogsea/man/image_actions.Rd | 1 analogsea-0.6.0/analogsea/man/image_convert.Rd | 1 analogsea-0.6.0/analogsea/man/image_delete.Rd | 3 analogsea-0.6.0/analogsea/man/image_transfer.Rd | 1 analogsea-0.6.0/analogsea/man/images.Rd | 3 analogsea-0.6.0/analogsea/man/key-crud.Rd | 3 analogsea-0.6.0/analogsea/man/keys.Rd | 15 - analogsea-0.6.0/analogsea/man/neighbors.Rd | 3 analogsea-0.6.0/analogsea/man/nouns.Rd | 1 analogsea-0.6.0/analogsea/man/pipe.Rd | 1 analogsea-0.6.0/analogsea/man/rate_limit.Rd | 1 analogsea-0.6.0/analogsea/man/regions.Rd | 1 analogsea-0.6.0/analogsea/man/resize.Rd | 1 analogsea-0.6.0/analogsea/man/sizes.Rd | 1 analogsea-0.6.0/analogsea/man/snapshots.Rd | 3 analogsea-0.6.0/analogsea/man/spaces.Rd |only analogsea-0.6.0/analogsea/man/standardise_keys.Rd | 1 analogsea-0.6.0/analogsea/man/tag_create.Rd | 1 analogsea-0.6.0/analogsea/man/tag_delete.Rd | 3 analogsea-0.6.0/analogsea/man/tag_rename-defunct.Rd |only analogsea-0.6.0/analogsea/man/tag_resource.Rd | 1 analogsea-0.6.0/analogsea/man/tag_resource_delete.Rd | 1 analogsea-0.6.0/analogsea/man/tags.Rd | 5 analogsea-0.6.0/analogsea/man/volume-actions.Rd | 7 analogsea-0.6.0/analogsea/man/volumes.Rd | 5 analogsea-0.6.0/analogsea/man/words.Rd | 1 analogsea-0.6.0/analogsea/tests/testthat/test-space.R |only 86 files changed, 448 insertions(+), 319 deletions(-)
Title: Spatial Methods and Indices
Description: Functions for spatial methods based on generalized estimating equations (GEE) and
wavelet-revised methods (WRM), functions for scaling by wavelet multiresolution regression (WMRR),
conducting multi-model inference, and stepwise model selection. Further, contains functions
for spatially corrected model accuracy measures.
Author: Gudrun Carl [cre, aut], Ingolf Kuehn [aut], Sam Levin [aut]
Maintainer: Sam Levin <levisc8@gmail.com>
Diff between spind versions 2.1.1 dated 2017-09-03 and 2.1.2 dated 2018-01-04
DESCRIPTION | 10 - MD5 | 76 ++++----- NAMESPACE | 53 +++++- R/AIC_Calc.R | 18 +- R/GEE.R | 314 ++++++++++++++++++++++----------------- R/Predict_GEE.R | 3 R/Predict_WRM.R | 40 +++- R/WRM.R | 108 +++++++------ R/acfft.R | 16 + R/adjusted.actuals.R | 16 + R/mmiGEE.R | 29 ++- R/mmiWMRR.R | 25 +-- R/plot_covar.R | 46 +++-- R/rvi_plot.R | 52 ++---- R/scale_WMRR.R | 73 +++++---- R/spind.R | 5 R/step_spind.R | 69 +++++--- R/summary_GEE.R | 11 - R/summary_WRM.R | 4 R/th_dep.R | 3 R/th_indep.R | 79 ++++++--- R/upscale.R | 21 +- R/wavecovar.R | 1 R/wavevar.R | 2 build/vignette.rds |binary inst/doc/spind_vignette.R | 2 inst/doc/spind_vignette.Rmd | 12 - inst/doc/spind_vignette.html | 82 +++++----- man/GEE.Rd | 9 - man/WRM.Rd | 2 man/aic.calc.Rd | 1 man/mmiGEE.Rd | 6 man/mmiWMRR.Rd | 10 - man/scaleWMRR.Rd | 9 - man/step.spind.Rd | 2 man/wavevar.Rd | 1 tests/testthat/test_scaleWMRR.R | 6 tests/testthat/test_step_spind.R | 21 ++ vignettes/spind_vignette.Rmd | 12 - 39 files changed, 749 insertions(+), 500 deletions(-)
Title: Nonparametric Kernel Smoothing Methods for Mixed Data Types
Description: Nonparametric (and semiparametric) kernel methods that seamlessly handle a mix of continuous, unordered, and ordered factor data types. We would like to gratefully acknowledge support from the Natural Sciences and Engineering Research Council of Canada (NSERC, <http://www.nserc-crsng.gc.ca>), the Social Sciences and Humanities Research Council of Canada (SSHRC, <http://www.sshrc-crsh.gc.ca>), and the Shared Hierarchical Academic Research Computing Network (SHARCNET, <http://www.sharcnet.ca>).
Author: Jeffrey S. Racine [aut, cre],
Tristen Hayfield [aut]
Maintainer: Jeffrey S. Racine <racinej@mcmaster.ca>
Diff between np versions 0.60-4 dated 2017-12-04 and 0.60-5 dated 2018-01-04
CHANGELOG | 7 +++++ DESCRIPTION | 8 +++--- MD5 | 24 ++++++++++-------- NAMESPACE | 2 + R/np.plot.R | 48 ++++++++++++++---------------------- R/npuniden.boundary.R |only R/npuniden.reflect.R |only R/zzz.R | 2 - inst/doc/entropy_np.pdf |binary inst/doc/np.pdf |binary inst/doc/np_faq.Rnw | 62 +++++++++++------------------------------------ inst/doc/np_faq.pdf |binary man/npuniden.boundary.Rd |only man/npuniden.reflect.Rd |only vignettes/np_faq.Rnw | 62 +++++++++++------------------------------------ 15 files changed, 77 insertions(+), 138 deletions(-)
Title: Simple Tools for Examining and Cleaning Dirty Data
Description: The main janitor functions can: perfectly format data.frame column
names; provide quick one- and two-variable tabulations (i.e., frequency
tables and crosstabs); and isolate duplicate records. Other janitor functions
nicely format the tabulation results. These tabulate-and-report functions
approximate popular features of SPSS and Microsoft Excel. This package
follows the principles of the "tidyverse" and works well with the pipe function
%>%. janitor was built with beginning-to-intermediate R users in mind and is
optimized for user-friendliness. Advanced R users can already do everything
covered here, but with janitor they can do it faster and save their thinking for
the fun stuff.
Author: Sam Firke [aut, cre],
Chris Haid [ctb],
Ryan Knight [ctb]
Maintainer: Sam Firke <samuel.firke@gmail.com>
Diff between janitor versions 0.3.0 dated 2017-05-06 and 0.3.1 dated 2018-01-04
DESCRIPTION | 6 MD5 | 14 NEWS.md | 9 R/adorn_crosstab.R | 2 R/adorn_helpers.R | 2 build/vignette.rds |binary inst/doc/introduction.html | 852 ++++++++++++++++++++++++++++++++++++--------- man/adorn_crosstab.Rd | 2 8 files changed, 722 insertions(+), 165 deletions(-)
Title: Planning and Analyzing Dose Finding Experiments
Description: The DoseFinding package provides functions for the design and analysis
of dose-finding experiments (with focus on pharmaceutical Phase
II clinical trials). It provides functions for: multiple contrast
tests, fitting non-linear dose-response models (using Bayesian and
non-Bayesian estimation), calculating optimal designs and an
implementation of the MCPMod methodology.
Author: Bjoern Bornkamp, Jose Pinheiro, Frank Bretz
Maintainer: Bjoern Bornkamp <bbnkmp@gmail.com>
Diff between DoseFinding versions 0.9-15 dated 2016-07-26 and 0.9-16 dated 2018-01-04
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NAMESPACE | 2 +- R/planMod.R | 26 ++++++++++++++------------ man/DoseFinding-package.Rd | 4 ++-- man/planMod.Rd | 10 ++++------ src/DoseFinding_init.c |only tests/testplanMod.R | 15 +++++++++++++++ 9 files changed, 51 insertions(+), 32 deletions(-)
Title: Interface to the Numerai Machine Learning Tournament API
Description: Routines to interact with the Numerai Machine Learning Tournament
API <https://numer.ai>. The functionality includes the ability to automatically download the
current tournament data, submit predictions, and to get information for your
user. General 'GraphQL' queries can also be executed.
Author: Omni Analytics Group [aut],
Eric Hare [cre]
Maintainer: Eric Hare <eric@omnianalytics.io>
Diff between Rnumerai versions 0.1 dated 2017-12-05 and 0.2 dated 2018-01-04
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/source.R | 6 +++--- README.md | 10 ++++++---- man/submit_predictions.Rd | 2 +- 5 files changed, 17 insertions(+), 15 deletions(-)
Title: Analysis of Quaternary Science Data
Description: Functions for the analysis of Quaternary science data, including
constrained clustering, WA, WAPLS, IKFA, MLRC and MAT transfer
functions, and stratigraphic diagrams.
Author: Steve Juggins
Maintainer: ORPHANED
Diff between rioja versions 0.9-15 dated 2017-06-18 and 0.9-15.1 dated 2018-01-04
DESCRIPTION | 11 +++++++---- MD5 | 12 ++++++------ src/lread.c | 2 +- src/mat.cpp | 18 +++++++++--------- src/mlrc.cpp | 2 +- src/rdfmt.c | 2 +- src/wa.cpp | 2 +- 7 files changed, 26 insertions(+), 23 deletions(-)
Title: Robust PCA by Projection Pursuit
Description: Provides functions for robust PCA by projection pursuit. The methods are described in Croux et al. (2006) <doi:10.2139/ssrn.968376>, Croux et al. (2013) <doi:10.1080/00401706.2012.727746>, Todorov and Filzmoser (2013) <doi:10.1007/978-3-642-33042-1_31>.
Author: Peter Filzmoser, Heinrich Fritz, Klaudius Kalcher
Maintainer: ORPHANED
Diff between pcaPP versions 1.9-72 dated 2017-06-27 and 1.9-72.1 dated 2018-01-04
DESCRIPTION | 12 ++++++++---- MD5 | 4 ++-- src/hess.cpp | 6 +++--- 3 files changed, 13 insertions(+), 9 deletions(-)
Title: Fish Migration Monitoring
Description: Graphical outputs and treatment for a database of fish pass
monitoring. It is a part of the 'STACOMI' open source project developed in
France by the French Agency for Biodiversity (AFB) institute to centralize
data obtained by fish pass monitoring. Version 0.5.3.1 is available in French and
English. See <http://stacomir.r-forge.r-project.org/> for more information on
'STACOMI'.
Author: Cedric Briand [aut, cre],
Marion Legrand [aut],
Timothee Besse [aut]
Maintainer: Cedric Briand <cedric.briand00@gmail.com>
Diff between stacomiR versions 0.5.3 dated 2017-06-26 and 0.5.3.1 dated 2018-01-04
DESCRIPTION | 17 ++-- MD5 | 52 +++++++------ NAMESPACE | 2 R/fungraph_glasseel.R | 2 R/interface_report_mig_char.R | 2 R/po/R-stacomiR_fr_FR.mo |binary R/po/R-stacomiR_fr_FR.po | 53 +++++++------ R/ref_horodate.R | 2 R/ref_timestep.R | 6 - R/report_ge_weight.R | 4 - R/report_mig_char.R | 17 ++-- R/report_mig_env.R | 2 R/report_mig_interannual.R | 104 ++++++++++++++------------- R/report_mig_mult.R | 17 +++- R/report_sea_age.R | 2 R/stacomi.R | 9 ++ inst/config/generate_Roxygen2.R | 10 +- inst/cran-comments |only inst/po |only man/calcule-report_mig_mult-method.Rd | 6 + man/choice_c-report_mig_char-method.Rd | 3 man/envir_stacomi.Rd | 9 +- man/figures |only man/fun_report_mig_mult.Rd | 4 - man/stacomi.Rd | 2 man/summary-report_mig_interannual-method.Rd | 3 po |only 27 files changed, 190 insertions(+), 138 deletions(-)
Title: 'Neurovault' Database API Access
Description: Uses 'Neurovault' API <https://neurovault.org/api-docs> to
download statistical maps of the human brain stored on that platform.
Author: John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between neurovault versions 0.5.4 dated 2017-12-01 and 0.5.5 dated 2018-01-04
DESCRIPTION | 8 - MD5 | 13 - NAMESPACE | 2 NEWS.md | 4 R/nv_collections.R | 3 README.md |only build/vignette.rds |binary inst/doc/neurovault.html | 349 +++++++++++++++++++++++------------------------ 8 files changed, 197 insertions(+), 182 deletions(-)
Title: Linear and Nonlinear Methods for Analyzing Dendroclimatological
Data
Description: Provides novel dendroclimatological methods, primarily used by the
Tree-ring research community. There are two core functions. The first one is
daily_response(), which finds the optimal sequence of days that are related
to one or more tree-ring proxy records. The second one is compare_methods(),
which effectively compares several linear and nonlinear regression algorithms.
Author: Jernej Jevsenak [aut, cre], Tom Levanic [ctb]
Maintainer: Jernej Jevsenak <jernej.jevsenak@gmail.com>
Diff between dendroTools versions 0.0.4 dated 2017-10-23 and 0.0.5 dated 2018-01-04
dendroTools-0.0.4/dendroTools/R/calculate_measures.R |only dendroTools-0.0.4/dendroTools/R/example_MVA.R |only dendroTools-0.0.4/dendroTools/R/example_TRW.R |only dendroTools-0.0.4/dendroTools/R/example_proxies_2.R |only dendroTools-0.0.4/dendroTools/data/example_MVA.rda |only dendroTools-0.0.4/dendroTools/data/example_TRW.rda |only dendroTools-0.0.4/dendroTools/data/example_proxies_2.rda |only dendroTools-0.0.4/dendroTools/man/calculate_measures.Rd |only dendroTools-0.0.4/dendroTools/man/example_MVA.Rd |only dendroTools-0.0.4/dendroTools/man/example_TRW.Rd |only dendroTools-0.0.4/dendroTools/man/example_proxies_2.Rd |only dendroTools-0.0.5/dendroTools/DESCRIPTION | 17 dendroTools-0.0.5/dendroTools/MD5 | 87 dendroTools-0.0.5/dendroTools/NAMESPACE | 12 dendroTools-0.0.5/dendroTools/NEWS.md | 25 dendroTools-0.0.5/dendroTools/R/KRE_daily_temperatures.R | 2 dendroTools-0.0.5/dendroTools/R/LJ_daily_precipitation.R |only dendroTools-0.0.5/dendroTools/R/LJ_daily_temperatures.R | 8 dendroTools-0.0.5/dendroTools/R/calculate_metrics.R |only dendroTools-0.0.5/dendroTools/R/compare_methods.R | 705 +++++-- dendroTools-0.0.5/dendroTools/R/count_ones.R | 8 dendroTools-0.0.5/dendroTools/R/daily_response.R | 952 ++++++++-- dendroTools-0.0.5/dendroTools/R/data_MVA.R |only dendroTools-0.0.5/dendroTools/R/data_TRW.R |only dendroTools-0.0.5/dendroTools/R/data_TRW_1.R |only dendroTools-0.0.5/dendroTools/R/example_proxies_individual.R |only dendroTools-0.0.5/dendroTools/R/plot_extreme.R | 361 +-- dendroTools-0.0.5/dendroTools/R/plot_heatmap.R | 42 dendroTools-0.0.5/dendroTools/R/plot_specific.R | 368 ++- dendroTools-0.0.5/dendroTools/R/round_df.R | 3 dendroTools-0.0.5/dendroTools/R/smooth_matrix.R | 11 dendroTools-0.0.5/dendroTools/R/years_to_rownames.R | 4 dendroTools-0.0.5/dendroTools/build |only dendroTools-0.0.5/dendroTools/data/LJ_daily_precipitation.rda |only dendroTools-0.0.5/dendroTools/data/LJ_daily_temperatures.rda |binary dendroTools-0.0.5/dendroTools/data/data_MVA.rda |only dendroTools-0.0.5/dendroTools/data/data_TRW.rda |only dendroTools-0.0.5/dendroTools/data/data_TRW_1.rda |only dendroTools-0.0.5/dendroTools/data/example_proxies_individual.rda |only dendroTools-0.0.5/dendroTools/inst |only dendroTools-0.0.5/dendroTools/man/KRE_daily_temperatures.Rd | 2 dendroTools-0.0.5/dendroTools/man/LJ_daily_precipitation.Rd |only dendroTools-0.0.5/dendroTools/man/LJ_daily_temperatures.Rd | 8 dendroTools-0.0.5/dendroTools/man/calculate_metrics.Rd |only dendroTools-0.0.5/dendroTools/man/compare_methods.Rd | 90 dendroTools-0.0.5/dendroTools/man/count_ones.Rd | 7 dendroTools-0.0.5/dendroTools/man/daily_response.Rd | 247 +- dendroTools-0.0.5/dendroTools/man/data_MVA.Rd |only dendroTools-0.0.5/dendroTools/man/data_TRW.Rd |only dendroTools-0.0.5/dendroTools/man/data_TRW_1.Rd |only dendroTools-0.0.5/dendroTools/man/example_proxies_individual.Rd |only dendroTools-0.0.5/dendroTools/man/plot_extreme.Rd | 30 dendroTools-0.0.5/dendroTools/man/plot_heatmap.Rd | 11 dendroTools-0.0.5/dendroTools/man/plot_specific.Rd | 25 dendroTools-0.0.5/dendroTools/man/round_df.Rd | 1 dendroTools-0.0.5/dendroTools/man/smooth_matrix.Rd | 9 dendroTools-0.0.5/dendroTools/man/years_to_rownames.Rd | 2 dendroTools-0.0.5/dendroTools/tests/testthat/test_general.R | 20 dendroTools-0.0.5/dendroTools/vignettes |only 59 files changed, 2145 insertions(+), 912 deletions(-)
Title: Normalizing Transformation Functions
Description: Estimate a suite of normalizing transformations, including
a new technique based on ranks which can guarantee normally distributed
transformed data if there are no ties: ordered quantile normalization.
The package is built to estimate the best normalizing transformation for
a vector consistently and accurately. It implements the Box-Cox
transformation, the Yeo-Johnson transformation, three types of Lambert
WxF transformations, and the ordered quantile normalization
transformation.
Author: Ryan Andrew Peterson [aut, cre]
Maintainer: Ryan Andrew Peterson <ryan-peterson@uiowa.edu>
Diff between bestNormalize versions 0.2.2 dated 2017-11-14 and 1.0.0 dated 2018-01-04
DESCRIPTION | 14 MD5 | 49 +- NAMESPACE | 15 NEWS.md | 15 R/bestNormalize-package.R | 2 R/bestNormalize.R | 137 +++++- R/boxcox.R | 4 R/lambert.R | 4 R/orderNorm.R | 71 +-- R/plots.R |only R/yeojohnson.R | 93 ++-- README.md | 78 ++- build/vignette.rds |binary inst/doc/bestNormalize.R | 79 +-- inst/doc/bestNormalize.Rmd | 170 ++++--- inst/doc/bestNormalize.html | 820 ++++++++++++++---------------------- man/bestNormalize-package.Rd | 2 man/bestNormalize.Rd | 47 +- man/boxcox.Rd | 2 man/lambert.Rd | 4 man/orderNorm.Rd | 23 - man/plot.bestNormalize.Rd |only man/yeojohnson.Rd | 45 - tests/testthat/test_bestNormalize.R | 7 tests/testthat/test_lambert.R | 2 vignettes/bestNormalize.Rmd | 170 ++++--- vignettes/parallel_timings.jpg |only 27 files changed, 990 insertions(+), 863 deletions(-)
Title: Implementation of SparseDC Algorithm
Description: Implements the algorithm described in
Barron, M., Zhang, S. and Li, J. 2017, "A sparse differential
clustering algorithm for tracing cell type changes via single-cell
RNA-sequencing data", Nucleic Acids Research, gkx1113,
<doi:10.1093/nar/gkx1113>. This algorithm clusters samples from two
different populations, links the clusters across the conditions and
identifies marker genes for these changes. The package was designed for
scRNA-Seq data but is also applicable to many other data types, just
replace cells with samples and genes with variables. The package also
contains functions for estimating the parameters for SparseDC as outlined
in the paper. We recommend that users further select their marker genes
using the magnitude of the cluster centers.
Author: Jun Li [aut, cre],
Martin Barron [aut]
Maintainer: Jun Li <jun.li@nd.edu>
Diff between SparseDC versions 0.1.14 dated 2017-10-18 and 0.1.17 dated 2018-01-04
DESCRIPTION | 23 +++++++++++++---------- MD5 | 8 ++++---- R/sparsedc_cluster.R | 6 ++++-- build/vignette.rds |binary inst/doc/SparseDC.html | 46 +++++++++++++++++++++++----------------------- 5 files changed, 44 insertions(+), 39 deletions(-)
Title: 'fastText' Wrapper for Text Classification and Word
Representation
Description: Learning text representations and text classifiers may rely
on the same simple and efficient approach. 'fastText' is an open-source, free,
lightweight library that allows users to perform both tasks.
It transforms text into continuous vectors that can later
be used on many language related task.
It works on standard, generic hardware (no 'GPU' required).
It also includes model size reduction feature.
'fastText' original source code is available
at <https://github.com/facebookresearch/fastText>.
Author: Michaël Benesty [aut, cre, cph],
Facebook, Inc [cph]
Maintainer: Michaël Benesty <michael@benesty.fr>
Diff between fastrtext versions 0.2.4 dated 2017-12-09 and 0.2.5 dated 2018-01-04
DESCRIPTION | 10 +- MD5 | 74 ++++++++-------- NAMESPACE | 2 NEWS.md | 9 + R/API.R | 69 ++++++++++++--- inst/doc/list_commands.html | 4 inst/doc/supervised_learning.html | 42 ++++----- inst/doc/unsupervised_learning.html | 118 ++++++++++++------------- man/execute.Rd | 2 man/get_analogies.Rd | 2 man/get_dictionary.Rd | 2 man/get_labels.Rd | 2 man/get_nn.Rd | 2 man/get_parameters.Rd | 2 man/get_sentence_representation.Rd | 4 man/get_tokenized_text.Rd |only man/get_word_distance.Rd | 2 man/get_word_ids.Rd |only man/get_word_vectors.Rd | 2 man/predict.Rcpp_fastrtext.Rd | 2 src/fastrtext.cpp | 79 ++++++++++++----- src/fasttext/args.cc | 28 ++++++ src/fasttext/args.h | 28 +++--- src/fasttext/dictionary.cc | 44 +++++++-- src/fasttext/dictionary.h | 12 +- src/fasttext/fasttext.cc | 164 ++++++++++++++++++++++-------------- src/fasttext/fasttext.h | 19 +++- src/fasttext/main.cc | 51 +++++++++-- src/fasttext/matrix.cc | 92 ++++++++------------ src/fasttext/matrix.h | 79 +++++++++++------ src/fasttext/model.cc | 4 src/fasttext/productquantizer.cc | 22 ++-- src/fasttext/qmatrix.cc | 47 ++++------ src/fasttext/qmatrix.h | 5 - src/fasttext/vector.cc | 67 +++++--------- src/fasttext/vector.h | 30 ++++-- src/r_compliance.cc | 14 ++- src/r_compliance.h | 8 - tests/testthat/test-unsupervised.R | 34 +++++++ 39 files changed, 720 insertions(+), 457 deletions(-)
Title: Programming with Big Data -- Interface to ZeroMQ
Description: 'ZeroMQ' is a well-known library for high-performance
asynchronous messaging in scalable, distributed applications. This
package provides high level R wrapper functions to easily utilize
'ZeroMQ'. We mainly focus on interactive client/server programming
frameworks. For convenience, a minimal 'ZeroMQ' library (4.2.2)
is shipped with 'pbdZMQ', which can be used if no system installation
of 'ZeroMQ' is available. A few wrapper functions compatible with
'rzmq' are also provided.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
Christian Heckendorf [aut] (file transfer),
George Ostrouchov [aut] (Mac OSX),
Whit Armstrong [ctb] (some functions are modified from the rzmq package
for backwards compatibility),
Brian Ripley [ctb] (C code of shellexec, and Solaris),
R Core team [ctb] (some functions are modified from the R source code),
Philipp A. [ctb] (Fedora),
Elliott Sales de Andrade [ctb] (sprintf),
Spencer Aiello [ctb] (windows conf)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdZMQ versions 0.2-6 dated 2017-05-15 and 0.3-0 dated 2018-01-04
pbdZMQ-0.2-6/pbdZMQ/R/R_zmq_poll2.r |only pbdZMQ-0.2-6/pbdZMQ/R/czmq.r |only pbdZMQ-0.2-6/pbdZMQ/R/pyzmq_wrapper.r |only pbdZMQ-0.2-6/pbdZMQ/demo/mspoller2.r |only pbdZMQ-0.2-6/pbdZMQ/inst/examples/reqrep/pyzmq_client.r |only pbdZMQ-0.2-6/pbdZMQ/inst/examples/reqrep/pyzmq_server.r |only pbdZMQ-0.2-6/pbdZMQ/inst/zmq_copyright/MAINTAINERS |only pbdZMQ-0.2-6/pbdZMQ/man/b4_poll2.Rd |only pbdZMQ-0.2-6/pbdZMQ/man/pyzmq.Rd |only pbdZMQ-0.2-6/pbdZMQ/src/R_zmq_poll2.c |only pbdZMQ-0.2-6/pbdZMQ/src/pkg.m4 |only pbdZMQ-0.2-6/pbdZMQ/src/zmqsrc.win32 |only pbdZMQ-0.2-6/pbdZMQ/src/zmqsrc.win64 |only pbdZMQ-0.2-6/pbdZMQ/src/zmqsrc/src/Makefile.am |only pbdZMQ-0.2-6/pbdZMQ/src/zmqsrc/src/Makefile.in |only pbdZMQ-0.2-6/pbdZMQ/src/zmqsrc/zeromq.spec |only pbdZMQ-0.2-6/pbdZMQ/tests/pyzmq.R |only pbdZMQ-0.3-0/pbdZMQ/ChangeLog | 37 pbdZMQ-0.3-0/pbdZMQ/DESCRIPTION | 22 pbdZMQ-0.3-0/pbdZMQ/INSTALL | 18 pbdZMQ-0.3-0/pbdZMQ/MD5 | 703 - pbdZMQ-0.3-0/pbdZMQ/NAMESPACE | 12 pbdZMQ-0.3-0/pbdZMQ/R/111_control.r | 10 pbdZMQ-0.3-0/pbdZMQ/R/R_zmq_poll.r | 21 pbdZMQ-0.3-0/pbdZMQ/R/address.r | 8 pbdZMQ-0.3-0/pbdZMQ/R/get_conf.r | 84 pbdZMQ-0.3-0/pbdZMQ/R/get_conf_zmq.r |only pbdZMQ-0.3-0/pbdZMQ/R/zmq.r |only pbdZMQ-0.3-0/pbdZMQ/R/zzz.r.in | 48 pbdZMQ-0.3-0/pbdZMQ/README.md | 67 pbdZMQ-0.3-0/pbdZMQ/demo/00Index | 2 pbdZMQ-0.3-0/pbdZMQ/demo/check_eintr.r |only pbdZMQ-0.3-0/pbdZMQ/inst/doc/pbdZMQ-guide.pdf |binary pbdZMQ-0.3-0/pbdZMQ/inst/zmq_copyright/AUTHORS | 247 pbdZMQ-0.3-0/pbdZMQ/man/b3_poll.Rd | 8 pbdZMQ-0.3-0/pbdZMQ/man/xx_czmq_wrapper.Rd | 4 pbdZMQ-0.3-0/pbdZMQ/man/zz_zmq_control.Rd | 7 pbdZMQ-0.3-0/pbdZMQ/man/zz_zmq_flags.Rd |only pbdZMQ-0.3-0/pbdZMQ/src/Makevars.in | 3 pbdZMQ-0.3-0/pbdZMQ/src/Makevars.win | 26 pbdZMQ-0.3-0/pbdZMQ/src/R_zmq.h | 4 pbdZMQ-0.3-0/pbdZMQ/src/R_zmq_poll.c | 9 pbdZMQ-0.3-0/pbdZMQ/src/R_zmq_transfer.c | 2 pbdZMQ-0.3-0/pbdZMQ/src/R_zmq_utility.c | 16 pbdZMQ-0.3-0/pbdZMQ/src/build_zmq.in | 11 pbdZMQ-0.3-0/pbdZMQ/src/build_zmq_linux.inc | 59 pbdZMQ-0.3-0/pbdZMQ/src/build_zmq_mingw.inc | 110 pbdZMQ-0.3-0/pbdZMQ/src/install.libs.R | 76 pbdZMQ-0.3-0/pbdZMQ/src/shellexec_wcc.c | 6 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc.win |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/Makefile.am | 820 + pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/Makefile.in | 4935 ++++++++++ pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/acinclude.m4 | 425 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/aclocal.m4 | 918 + pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/autogen.sh | 10 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/compile | 99 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/config.guess | 184 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/config.sub | 110 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/depcomp | 485 - pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/install-sh | 14 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/libtool.m4 | 52 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/lt_obsolete.m4 | 4 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/ltmain.sh | 4 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/missing | 412 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/config/test-driver |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/configure | 5166 +++++++---- pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/configure.ac | 607 - pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/include/zmq.h | 244 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/include/zmq.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/include/zmq_addon.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/include/zmq_utils.h | 46 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/m4 |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/address.cpp | 75 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/address.hpp | 40 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/array.hpp | 42 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/atomic_counter.hpp | 78 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/atomic_ptr.hpp | 77 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/blob.hpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/client.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/client.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/clock.cpp | 96 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/clock.hpp | 42 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/command.hpp | 49 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/condition_variable.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/config.hpp | 37 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ctx.cpp | 257 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ctx.hpp | 65 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/curve_client.cpp | 64 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/curve_client.hpp | 46 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/curve_server.cpp | 61 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/curve_server.hpp | 44 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/dbuffer.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/dealer.cpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/dealer.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/decoder.hpp | 105 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/decoder_allocators.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/decoder_allocators.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/devpoll.cpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/devpoll.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/dgram.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/dgram.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/dish.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/dish.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/dist.cpp | 57 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/dist.hpp | 31 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/encoder.hpp | 34 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/epoll.cpp | 52 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/epoll.hpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/err.cpp | 208 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/err.hpp | 53 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/fd.hpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/fq.cpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/fq.hpp | 30 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/gather.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/gather.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/gssapi_client.cpp | 34 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/gssapi_client.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/gssapi_mechanism_base.cpp | 42 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/gssapi_mechanism_base.hpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/gssapi_server.cpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/gssapi_server.hpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/i_decoder.hpp | 33 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/i_encoder.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/i_engine.hpp | 35 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/i_mailbox.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/i_poll_events.hpp | 48 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/io_object.cpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/io_object.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/io_thread.cpp | 34 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/io_thread.hpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ip.cpp | 89 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ip.hpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ipc_address.cpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ipc_address.hpp | 30 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ipc_connecter.cpp | 45 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ipc_connecter.hpp | 34 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ipc_listener.cpp | 202 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ipc_listener.hpp | 47 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/kqueue.cpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/kqueue.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/lb.cpp | 45 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/lb.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/libzmq.pc.cmake.in | 3 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/libzmq.pc.in | 3 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/likely.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/macros.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/mailbox.cpp | 37 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/mailbox.hpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/mailbox_safe.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/mailbox_safe.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/mechanism.cpp | 50 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/mechanism.hpp | 30 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/metadata.cpp | 33 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/metadata.hpp | 42 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/msg.cpp | 287 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/msg.hpp | 164 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/mtrie.cpp | 100 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/mtrie.hpp | 37 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/mutex.hpp | 78 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/norm_engine.cpp | 110 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/norm_engine.hpp | 74 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/null_mechanism.cpp | 35 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/null_mechanism.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/object.cpp | 52 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/object.hpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/options.cpp | 343 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/options.hpp | 83 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/own.cpp | 33 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/own.hpp | 34 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pair.cpp | 33 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pair.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pgm_receiver.cpp | 53 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pgm_receiver.hpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pgm_sender.cpp | 51 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pgm_sender.hpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pgm_socket.cpp | 144 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pgm_socket.hpp | 45 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pipe.cpp | 135 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pipe.hpp | 71 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/plain_client.cpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/plain_client.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/plain_server.cpp | 35 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/plain_server.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/platform.hpp.in | 77 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/poll.cpp | 39 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/poll.hpp | 30 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/poller.hpp | 53 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/poller_base.cpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/poller_base.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pollset.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pollset.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/precompiled.cpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/precompiled.hpp | 107 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/proxy.cpp | 69 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/proxy.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pub.cpp | 42 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pub.hpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pull.cpp | 33 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/pull.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/push.cpp | 37 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/push.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/radio.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/radio.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/random.cpp | 34 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/random.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/raw_decoder.cpp | 61 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/raw_decoder.hpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/raw_encoder.cpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/raw_encoder.hpp | 34 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/reaper.cpp | 39 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/reaper.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/rep.cpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/rep.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/req.cpp | 72 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/req.hpp | 31 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/router.cpp | 152 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/router.hpp | 39 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/scatter.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/scatter.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/select.cpp | 448 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/select.hpp | 104 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/server.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/server.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/session_base.cpp | 119 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/session_base.hpp | 33 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/signaler.cpp | 228 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/signaler.hpp | 31 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/socket_base.cpp | 740 + pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/socket_base.hpp | 103 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/socket_poller.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/socket_poller.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/socks.cpp | 49 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/socks.hpp | 38 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/socks_connecter.cpp | 74 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/socks_connecter.hpp | 33 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/stdint.hpp | 34 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/stream.cpp | 68 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/stream.hpp | 30 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/stream_engine.cpp | 358 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/stream_engine.hpp | 56 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/sub.cpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/sub.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tcp.cpp | 145 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tcp.hpp | 36 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tcp_address.cpp | 358 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tcp_address.hpp | 41 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tcp_connecter.cpp | 165 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tcp_connecter.hpp | 41 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tcp_listener.cpp | 98 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tcp_listener.hpp | 31 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/thread.cpp | 66 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/thread.hpp | 38 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/timers.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/timers.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tipc_address.cpp | 45 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tipc_address.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tipc_connecter.cpp | 34 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tipc_connecter.hpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tipc_listener.cpp | 32 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tipc_listener.hpp | 30 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/trie.cpp | 56 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/trie.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tweetnacl.c |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/tweetnacl.h |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/udp_address.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/udp_address.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/udp_engine.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/udp_engine.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/v1_decoder.cpp | 59 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/v1_decoder.hpp | 40 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/v1_encoder.cpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/v1_encoder.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/v2_decoder.cpp | 117 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/v2_decoder.hpp | 47 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/v2_encoder.cpp | 29 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/v2_encoder.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/v2_protocol.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/version.rc.in |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/vmci.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/vmci.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/vmci_address.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/vmci_address.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/vmci_connecter.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/vmci_connecter.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/vmci_listener.cpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/vmci_listener.hpp |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/windows.hpp | 51 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/wire.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/xpub.cpp | 205 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/xpub.hpp | 52 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/xsub.cpp | 52 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/xsub.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ypipe.hpp | 33 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ypipe_base.hpp | 28 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/ypipe_conflate.hpp | 30 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/yqueue.hpp | 58 pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/zmq.cpp | 571 + pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/zmq_draft.h |only pbdZMQ-0.3-0/pbdZMQ/src/zmqsrc/src/zmq_utils.cpp | 195 pbdZMQ-0.3-0/pbdZMQ/src/zzz.c | 6 pbdZMQ-0.3-0/pbdZMQ/tests/address.R |only pbdZMQ-0.3-0/pbdZMQ/tests/ports.R |only pbdZMQ-0.3-0/pbdZMQ/tests/send_recv.R |only pbdZMQ-0.3-0/pbdZMQ/vignettes/pbdZMQ-include/99-faq.tex | 24 304 files changed, 21003 insertions(+), 7701 deletions(-)
Title: Generalized Joint Attribute Modeling
Description: Analyzes joint attribute data (e.g., species abundance) that are combinations of continuous and discrete data with Gibbs sampling.
Author: James S. Clark, Daniel Taylor-Rodriquez
Maintainer: James S. Clark <jimclark@duke.edu>
Diff between gjam versions 2.1.7 dated 2017-12-22 and 2.1.8 dated 2018-01-04
DESCRIPTION | 8 +- MD5 | 39 +++++------ NAMESPACE | 3 R/RcppExports.R | 4 + R/gjamHfunctions.R | 157 ++++++++++++++++++++++++++++++++++++++------- inst/doc/gjamVignette.R | 40 +++++++++++ inst/doc/gjamVignette.Rmd | 67 ++++++++++++++++++- inst/doc/gjamVignette.html | 97 +++++++++++++++++++++------ man/gjam-package.Rd | 14 ++-- man/gjam.Rd | 2 man/gjamCensorY.Rd | 2 man/gjamIIE.Rd | 2 man/gjamIIEplot.Rd | 2 man/gjamOrdination.Rd | 3 man/gjamPoints2Grid.Rd | 2 man/gjamPredict.Rd | 3 man/gjamSensitivity.Rd |only man/gjamSimData.Rd | 2 src/RcppExports.cpp | 15 ++++ src/cppFns.cpp | 25 +++++++ vignettes/gjamVignette.Rmd | 67 ++++++++++++++++++- 21 files changed, 472 insertions(+), 82 deletions(-)
Title: String Distance Calculation with Tidy Data Principles
Description: Calculation of string distance following the tidy data principles. Built on top
of the 'stringdist' package.
Author: Colin Fay [aut, cre]
Maintainer: Colin Fay <contact@colinfay.me>
Diff between tidystringdist versions 0.1.0 dated 2017-09-29 and 0.1.2 dated 2018-01-04
DESCRIPTION | 13 MD5 | 29 +- NAMESPACE | 5 NEWS.md | 14 R/globalVariables.R | 2 R/tidycomb.R | 13 R/tidystringdist.R | 20 - R/utils.R |only README.md | 166 +++++++---- build/vignette.rds |binary inst/doc/Getting_started.R | 15 - inst/doc/Getting_started.Rmd | 27 + inst/doc/Getting_started.html | 476 ++++++++++++++++++++++++--------- man/tidy_stringdist.Rd | 2 tests/testthat/test-tidy_string_dist.R | 9 vignettes/Getting_started.Rmd | 27 + 16 files changed, 582 insertions(+), 236 deletions(-)
More information about tidystringdist at CRAN
Permanent link
Title: Geometric Shadow Calculations
Description: Functions for calculating (1) shadow heights; (2) shadow footprint on ground polygons; and (3) Sky View Factor values. Inputs include a polygonal layer of obstacle outlines along with their heights, sun azimuth and sun elevation. The package also provides functions for related preliminary calculations: breaking polygons into line segments, finding segment azimuth, shifting segments by azimuth and distance, constructing the footprint of a line-of-sight between an observer and the sun, and creating a 3D grid covering surface area of extruded polygons.
Author: Michael Dorman [aut, cre],
Evyatar Erell [ctb],
Itai Kloog [ctb],
Adi Vulkan [ctb]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between shadow versions 0.4.0 dated 2017-11-05 and 0.4.5 dated 2018-01-04
shadow-0.4.0/shadow/R/shadow.R |only shadow-0.4.5/shadow/DESCRIPTION | 11 +++++---- shadow-0.4.5/shadow/MD5 | 30 +++++++++++++++---------- shadow-0.4.5/shadow/NAMESPACE | 4 +++ shadow-0.4.5/shadow/NEWS.md | 7 +++++ shadow-0.4.5/shadow/R/inShadow.R |only shadow-0.4.5/shadow/R/plotGrid.R |only shadow-0.4.5/shadow/R/shadow-package.R |only shadow-0.4.5/shadow/R/shadowFootprint.R | 2 - shadow-0.4.5/shadow/R/shadowHeight.R | 14 +++++------ shadow-0.4.5/shadow/R/shiftAz.R | 4 +-- shadow-0.4.5/shadow/R/surfaceGrid.R |only shadow-0.4.5/shadow/build/vignette.rds |binary shadow-0.4.5/shadow/inst/doc/introduction.html | 18 ++++++++------- shadow-0.4.5/shadow/man/inShadow.Rd |only shadow-0.4.5/shadow/man/plotGrid.Rd |only shadow-0.4.5/shadow/man/shadow.Rd | 2 - shadow-0.4.5/shadow/man/shadowFootprint.Rd | 2 - shadow-0.4.5/shadow/man/shadowHeight.Rd | 10 +++----- shadow-0.4.5/shadow/man/surfaceGrid.Rd |only 20 files changed, 60 insertions(+), 44 deletions(-)
Title: An Individual-Based Population Genetic Simulation Environment
Description: An interface between R and the metasim simulation engine.
The simulation environment is documented in: "Strand, A.(2002) <DOI:10.1046/j.1471-8286.2002.00208.x> Metasim 1.0: an individual-based environment for simulating population genetics of
complex population dynamics. Mol. Ecol. Notes.
Please see the vignettes CreatingLandscapes and Simulating to get some ideas on how to use the packages.
See the rmetasim vignette to get an overview and to see important changes to the
code in the most recent version.
Author: Allan Strand <stranda@cofc.edu>,
James Niehaus
Maintainer: Allan Strand <stranda@cofc.edu>
Diff between rmetasim versions 3.1.5 dated 2017-11-07 and 3.1.6 dated 2018-01-04
DESCRIPTION | 10 MD5 | 22 - build/vignette.rds |binary inst/doc/ApplyCarryToStage.html | 405 ++++++--------------- inst/doc/CreatingLandscapes.html | 701 ++++++++++++------------------------- inst/doc/Sexuality-and-mating.html | 258 +++---------- inst/doc/Simulating.R | 77 +--- inst/doc/Simulating.Rmd | 61 +-- inst/doc/Simulating.html | 526 +++++++++------------------ inst/doc/rmetasim.html | 241 ++---------- src/const.h | 2 vignettes/Simulating.Rmd | 61 +-- 12 files changed, 745 insertions(+), 1619 deletions(-)
Title: Multivariate Synthetic Control Method Using Time Series
Description: Three generalizations of the synthetic control method (which has
already an implementation in package 'Synth') are implemented: first,
'MSCMT' allows for using multiple outcome variables, second, time series
can be supplied as economic predictors, and third, a well-defined
cross-validation approach can be used.
Much effort has been taken to make the implementation as stable as possible
(including edge cases) without losing computational efficiency.
A detailed description of the main algorithms is given in
Becker and Klößner (2018) <doi:10.1016/j.ecosta.2017.08.002>.
Author: Martin Becker [aut, cre] (<https://orcid.org/0000-0003-2336-9751>),
Stefan Klößner [aut],
Karline Soetaert [com],
LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between MSCMT versions 1.3.0 dated 2017-08-17 and 1.3.1 dated 2018-01-04
DESCRIPTION | 25 +- MD5 | 32 +-- NAMESPACE | 2 NEWS | 13 + R/Helpers.r | 16 - R/MSCMT-package.r | 2 R/atomOpt.r | 46 ++-- R/mscmt.r | 10 - R/multiOpt.r | 380 ++++++++++++++++++++--------------------- R/zzz.r | 6 build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 11 - inst/doc/CheckingSynth.html | 6 inst/doc/WorkingWithMSCMT.html | 20 +- src/DE.c | 8 src/inverse.f | 59 ++++-- 17 files changed, 350 insertions(+), 286 deletions(-)
Title: Detrend Images
Description: Image series affected by bleaching must be corrected by
'detrending' prior to the performance of quantitative analysis.
'detrendr' is for correctly detrending images. It uses Nolan's algorithm
(Nolan et al., 2017 <doi:10.1093/bioinformatics/btx434>).
Author: Rory Nolan [aut, cre, cph],
Sergi Padilla-Parra [ths, cph]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between detrendr versions 0.1.0 dated 2017-10-24 and 0.2.0 dated 2018-01-04
detrendr-0.1.0/detrendr/R/io.R |only detrendr-0.1.0/detrendr/R/med_reflect.R |only detrendr-0.1.0/detrendr/man/display.Rd |only detrendr-0.1.0/detrendr/man/read_tif.Rd |only detrendr-0.1.0/detrendr/man/write_tif.Rd |only detrendr-0.1.0/detrendr/src/med_reflect.cpp |only detrendr-0.1.0/detrendr/src/med_reflect.h |only detrendr-0.1.0/detrendr/src/med_reflect_parallel.cpp |only detrendr-0.1.0/detrendr/tests/testthat/test-med_reflect.R |only detrendr-0.1.0/detrendr/tests/testthat/test_io.R |only detrendr-0.2.0/detrendr/DESCRIPTION | 13 detrendr-0.2.0/detrendr/MD5 | 94 ++---- detrendr-0.2.0/detrendr/NAMESPACE | 3 detrendr-0.2.0/detrendr/NEWS.md | 11 detrendr-0.2.0/detrendr/R/RcppExports.R | 40 -- detrendr-0.2.0/detrendr/R/best_degree.R | 84 +++-- detrendr-0.2.0/detrendr/R/best_l.R | 150 ++++------ detrendr-0.2.0/detrendr/R/best_tau.R | 151 ++++------ detrendr-0.2.0/detrendr/R/class_constructors.R | 40 +- detrendr-0.2.0/detrendr/R/detrend.R | 192 ++++++++----- detrendr-0.2.0/detrendr/R/detrendr.R | 19 + detrendr-0.2.0/detrendr/R/myrs.R | 3 detrendr-0.2.0/detrendr/R/pillar_stats.R | 130 +++++--- detrendr-0.2.0/detrendr/R/smooth.R | 21 - detrendr-0.2.0/detrendr/R/utils.R | 2 detrendr-0.2.0/detrendr/README.md |only detrendr-0.2.0/detrendr/build/vignette.rds |binary detrendr-0.2.0/detrendr/inst/CITATION | 2 detrendr-0.2.0/detrendr/inst/doc/detrendr.R | 25 - detrendr-0.2.0/detrendr/inst/doc/detrendr.Rmd | 17 - detrendr-0.2.0/detrendr/inst/doc/detrendr.html | 55 +-- detrendr-0.2.0/detrendr/man/best_degree.Rd | 26 + detrendr-0.2.0/detrendr/man/best_l.Rd | 26 + detrendr-0.2.0/detrendr/man/best_tau.Rd | 37 +- detrendr-0.2.0/detrendr/man/brightness_pillars.Rd | 21 - detrendr-0.2.0/detrendr/man/detrended_img.Rd | 31 +- detrendr-0.2.0/detrendr/man/detrending.Rd | 24 + detrendr-0.2.0/detrendr/man/detrendr.Rd |only detrendr-0.2.0/detrendr/man/pillar-stats.Rd | 33 +- detrendr-0.2.0/detrendr/src/RcppExports.cpp | 128 ++------ detrendr-0.2.0/detrendr/src/pillar_utils.h | 5 detrendr-0.2.0/detrendr/src/rbernoulli_parallel.cpp | 4 detrendr-0.2.0/detrendr/src/rpois_parallel.cc | 12 detrendr-0.2.0/detrendr/src/smooth.cc | 20 - detrendr-0.2.0/detrendr/src/smooth.h | 92 ++---- detrendr-0.2.0/detrendr/src/smooth_parallel.cc | 156 +++------- detrendr-0.2.0/detrendr/tests/testthat/test-myrs.R | 15 - detrendr-0.2.0/detrendr/tests/testthat/test-smooth.R | 12 detrendr-0.2.0/detrendr/tests/testthat/test_best_tau.R | 12 detrendr-0.2.0/detrendr/tests/testthat/test_detrend.R | 59 ++- detrendr-0.2.0/detrendr/tests/testthat/test_pillar_stats.R | 2 detrendr-0.2.0/detrendr/tests/testthat/test_pillar_utils.R | 2 detrendr-0.2.0/detrendr/tests/testthat/test_utils.R | 2 detrendr-0.2.0/detrendr/vignettes/detrendr.Rmd | 17 - 54 files changed, 903 insertions(+), 885 deletions(-)
Title: Charles's Utility Function using Formula
Description: Utility functions that provides wrapper to descriptive base functions
like cor, mean and table. It makes use of the formula interface to pass
variables to functions. It also provides operators to concatenate (%+%), to
repeat (%n%) and manage character vectors for nice display.
Author: Charles-Édouard Giguère
Maintainer: Charles-Édouard Giguère <ce.giguere@gmail.com>
Diff between CUFF versions 1.3 dated 2017-05-08 and 1.4 dated 2018-01-04
ChangeLog | 5 ++++- DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NAMESPACE | 4 ++-- R/corr.R | 11 +++++------ man/corr.Rd | 4 ++-- 6 files changed, 22 insertions(+), 20 deletions(-)
Title: Active Function Cross-Entropy Clustering
Description: Active function cross-entropy clustering partitions the n-dimensional data into the clusters by finding the parameters of the mixed generalized multivariate normal distribution, that optimally approximates the scattering of the data in the n-dimensional space, whose density function is of the form: p_1*N(mi_1,^sigma_1,sigma_1,f_1)+...+p_k*N(mi_k,^sigma_k,sigma_k,f_k). The above-mentioned generalization is performed by introducing so called "f-adapted Gaussian densities" (i.e. the ordinary Gaussian densities adapted by the "active function"). Additionally, the active function cross-entropy clustering performs the automatic reduction of the unnecessary clusters. For more information please refer to P. Spurek, J. Tabor, K.Byrski, "Active function Cross-Entropy Clustering" (2017) <doi:10.1016/j.eswa.2016.12.011>.
Author: Krzysztof Byrski [aut, cre], Przemyslaw Spurek [ctb]
Maintainer: Krzysztof Byrski <krzysiek.byrski@uj.edu.pl>
Diff between afCEC versions 1.0.1 dated 2018-01-04 and 1.0.2 dated 2018-01-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- man/afCEC-package.Rd | 2 +- src/afCEC.cpp | 2 +- 4 files changed, 8 insertions(+), 8 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-02 0.2-2
2016-04-19 0.2
2016-04-13 0.1-6-1
2015-11-23 0.1-6
2015-11-20 0.1-5
2015-10-23 0.1-4
2015-06-16 0.1-3
2015-06-14 0.1-2
Title: Wrap R Functions for Debugging and Parametric Programming
Description: Powerful tools for writing and debugging R code. Provides: 'let()' which converts non-standard evaluation interfaces to
parametric standard evaluation interface, 'DebugFnW()' to capture function context on error for
debugging, and ':=' named map builder, and lambda-abstraction.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between wrapr versions 1.0.2 dated 2017-12-14 and 1.1.0 dated 2018-01-04
DESCRIPTION | 8 ++-- MD5 | 63 ++++++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 8 ++++ R/atblock.R | 68 +++++------------------------------- R/bpipe.R | 51 +++++++++++++++++++++++---- R/let.R | 3 + R/mapvars.R | 2 + R/qae.R | 23 +++++++++++- R/qc.R | 2 + build/vignette.rds |binary inst/doc/CornerCases.html | 4 +- inst/doc/DebugFnW.html | 6 +-- inst/doc/SubstitutionModes.Rmd | 4 +- inst/doc/SubstitutionModes.html | 6 +-- inst/doc/dot_pipe.html | 4 +- inst/doc/lambda.html | 4 +- inst/doc/let.html | 4 +- inst/doc/named_map_builder.html | 4 +- inst/doc/wrapr_applicable.R |only inst/doc/wrapr_applicable.Rmd |only inst/doc/wrapr_applicable.html |only man/ateval.Rd | 23 +----------- man/beval.Rd | 35 +----------------- man/grapes-.-greater-than-grapes.Rd | 10 +++-- man/grapes-greater-than-.-grapes.Rd | 11 ++++- man/let.Rd | 2 - man/mapsyms.Rd | 3 + man/qae.Rd | 3 + man/qc.Rd | 3 + man/qe.Rd | 3 + man/qs.Rd |only man/seval.Rd | 10 +---- vignettes/SubstitutionModes.Rmd | 4 +- vignettes/wrapr_applicable.Rmd |only 35 files changed, 184 insertions(+), 188 deletions(-)
Title: Load Census TIGER/Line Shapefiles
Description: Download TIGER/Line shapefiles from the United States Census Bureau
(<https://www.census.gov/geo/maps-data/data/tiger-line.html>) and load into R as 'SpatialDataFrame' or 'sf' objects.
Author: Kyle Walker [aut, cre],
Bob Rudis [ctb]
Maintainer: Kyle Walker <kyle.walker@tcu.edu>
Diff between tigris versions 0.6.1 dated 2018-01-03 and 0.6.2 dated 2018-01-04
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- NAMESPACE | 1 + R/enumeration_units.R | 6 +++--- R/states.R | 2 +- R/tigris-package.R | 1 + 6 files changed, 18 insertions(+), 16 deletions(-)
Title: Fast and Light-Weight Caching (Memoization) of Objects and
Results to Speed Up Computations
Description: Memoization can be used to speed up repetitive and computational expensive function calls. The first time a function that implements memoization is called the results are stored in a cache memory. The next time the function is called with the same set of parameters, the results are momentarily retrieved from the cache avoiding repeating the calculations. With this package, any R object can be cached in a key-value storage where the key can be an arbitrary set of R objects. The cache memory is persistent (on the file system).
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.cache versions 0.12.0 dated 2015-11-12 and 0.13.0 dated 2018-01-04
R.cache-0.12.0/R.cache/R/006.fixVarArgs.R |only R.cache-0.12.0/R.cache/README.md |only R.cache-0.13.0/R.cache/DESCRIPTION | 14 R.cache-0.13.0/R.cache/MD5 | 88 - R.cache-0.13.0/R.cache/NEWS | 878 +++++++++++------- R.cache-0.13.0/R.cache/R/999.NonDocumentedObjects.R | 7 R.cache-0.13.0/R.cache/R/Object.getChecksum.R | 12 R.cache-0.13.0/R.cache/R/addMemoization.R | 12 R.cache-0.13.0/R.cache/R/addREADME.R | 8 R.cache-0.13.0/R.cache/R/clearCache.R | 23 R.cache-0.13.0/R.cache/R/evalWithMemoization.R | 7 R.cache-0.13.0/R.cache/R/findCache.R | 16 R.cache-0.13.0/R.cache/R/generateCache.R | 17 R.cache-0.13.0/R.cache/R/getCachePath.R | 23 R.cache-0.13.0/R.cache/R/getCacheRootPath.R | 28 R.cache-0.13.0/R.cache/R/getChecksum.R | 12 R.cache-0.13.0/R.cache/R/loadCache.R | 61 - R.cache-0.13.0/R.cache/R/memoizedCall.R | 12 R.cache-0.13.0/R.cache/R/options.R |only R.cache-0.13.0/R.cache/R/private.assertDigest.R | 31 R.cache-0.13.0/R.cache/R/private.baseLoad.R | 42 R.cache-0.13.0/R.cache/R/readCacheHeader.R | 23 R.cache-0.13.0/R.cache/R/saveCache.R | 79 - R.cache-0.13.0/R.cache/R/setCachePath.R | 7 R.cache-0.13.0/R.cache/R/setCacheRootPath.R | 31 R.cache-0.13.0/R.cache/R/setupCacheRootPath.R | 11 R.cache-0.13.0/R.cache/R/textPrompt.R | 9 R.cache-0.13.0/R.cache/R/zzz.R | 10 R.cache-0.13.0/R.cache/inst/_Rcache/README.txt | 2 R.cache-0.13.0/R.cache/man/Options_used_by_R.cache.Rd |only R.cache-0.13.0/R.cache/man/R.cache-package.Rd | 2 R.cache-0.13.0/R.cache/man/loadCache.Rd | 2 R.cache-0.13.0/R.cache/man/saveCache.Rd | 2 R.cache-0.13.0/R.cache/man/setCacheRootPath.Rd | 2 R.cache-0.13.0/R.cache/man/setupCacheRootPath.Rd | 2 R.cache-0.13.0/R.cache/tests/Object.getChecksum.R | 10 R.cache-0.13.0/R.cache/tests/addMemoization.R | 113 +- R.cache-0.13.0/R.cache/tests/clearCache.R | 32 R.cache-0.13.0/R.cache/tests/evalWithMemoization.R | 92 - R.cache-0.13.0/R.cache/tests/getCachePath.R | 20 R.cache-0.13.0/R.cache/tests/getCacheRootPath.R | 93 + R.cache-0.13.0/R.cache/tests/loadCache.R | 9 R.cache-0.13.0/R.cache/tests/memoizedCall.R | 80 - R.cache-0.13.0/R.cache/tests/readCacheHeader.R | 48 R.cache-0.13.0/R.cache/tests/setCachePath.R | 24 R.cache-0.13.0/R.cache/tests/setCacheRootPath.R | 18 R.cache-0.13.0/R.cache/tests/textPrompt.R | 30 47 files changed, 998 insertions(+), 1044 deletions(-)
Title: Programming with Big Data -- Interface to MPI
Description: An efficient interface to MPI by utilizing S4
classes and methods with a focus on Single Program/Multiple Data
('SPMD')
parallel programming style, which is intended for batch parallel
execution.
Author: Wei-Chen Chen [aut, cre],
George Ostrouchov [aut],
Drew Schmidt [aut],
Pragneshkumar Patel [aut],
Hao Yu [aut],
Christian Heckendorf [ctb] (FreeBSD),
Brian Ripley [ctb] (Windows HPC Pack 2012),
R Core team [ctb] (some functions are modified from the base packages)
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdMPI versions 0.3-3 dated 2016-12-18 and 0.3-4 dated 2018-01-04
ChangeLog | 15 ++++++++++++ DESCRIPTION | 8 +++--- MD5 | 47 +++++++++++++++++++------------------- R/api_apply_RC.r | 2 - R/float32.r |only R/spmd_allreduce.r | 21 ++++++++++++++++- R/spmd_allreduce_obj.r | 10 +++++--- R/spmd_communicator.r | 6 ++++ R/spmd_gatherv_obj.r | 6 +++- R/spmd_reduce.r | 30 +++++++++++++++++++++++- R/spmd_reduce_obj.r | 10 +++++--- README.md | 6 ++-- man/aa_allreduce-method.Rd | 2 + man/aa_reduce-method.Rd | 2 + man/cc_comm.Rd | 2 + man/yy_api_task_pull.Rd | 4 +-- man/zz_spmd_internal.Rd | 5 ++++ src/pkg_global.h | 2 - src/spmd.c | 26 ++++++++++++--------- src/spmd.h | 6 ++++ src/spmd_allreduce.c | 51 ++++++++++++++++++++++++++++++++++++++++++ src/spmd_communicator.c | 21 ++++++++++++++++- src/spmd_communicator_spawn.c | 9 ++++--- src/spmd_reduce.c | 51 ++++++++++++++++++++++++++++++++++++++++++ src/zzz.c | 7 ++++- 25 files changed, 287 insertions(+), 62 deletions(-)
Title: Latin Hypercube Samples
Description: Provides a number of methods for creating and augmenting Latin Hypercube Samples.
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between lhs versions 0.15 dated 2017-12-20 and 0.16 dated 2018-01-04
ChangeLog | 21 +++++++++++++-------- DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/doc/augmentLHS_Example.pdf |binary tests/runTests.R | 23 ++++++++--------------- 5 files changed, 30 insertions(+), 32 deletions(-)
Title: Provides Access to Git Repositories
Description: Interface to the 'libgit2' library, which is a pure C
implementation of the 'Git' core methods. Provides access to 'Git'
repositories to extract data and running some basic 'Git'
commands.
Author: See AUTHORS file.
Maintainer: Stefan Widgren <stefan.widgren@gmail.com>
Diff between git2r versions 0.20.0 dated 2017-12-17 and 0.21.0 dated 2018-01-04
git2r-0.20.0/git2r/src/libgit2/src/config_parse.c |only git2r-0.20.0/git2r/src/libgit2/src/config_parse.h |only git2r-0.20.0/git2r/src/libgit2/src/parse.c |only git2r-0.20.0/git2r/src/libgit2/src/parse.h |only git2r-0.20.0/git2r/src/libgit2/src/streams |only git2r-0.21.0/git2r/DESCRIPTION | 8 git2r-0.21.0/git2r/MD5 | 572 ++--- git2r-0.21.0/git2r/NEWS | 13 git2r-0.21.0/git2r/R/libgit2.r | 2 git2r-0.21.0/git2r/R/odb.r | 21 git2r-0.21.0/git2r/R/refspec.r | 4 git2r-0.21.0/git2r/R/remote.r | 2 git2r-0.21.0/git2r/R/status.r | 4 git2r-0.21.0/git2r/inst/CITATION | 4 git2r-0.21.0/git2r/man/odb_blobs-methods.Rd | 3 git2r-0.21.0/git2r/man/odb_objects-methods.Rd | 3 git2r-0.21.0/git2r/man/tree-index-methods.Rd | 2 git2r-0.21.0/git2r/src/Makevars.in | 29 git2r-0.21.0/git2r/src/git2r_arg.c | 32 git2r-0.21.0/git2r/src/git2r_blame.c | 2 git2r-0.21.0/git2r/src/git2r_blob.c | 8 git2r-0.21.0/git2r/src/git2r_branch.c | 22 git2r-0.21.0/git2r/src/git2r_clone.c | 8 git2r-0.21.0/git2r/src/git2r_commit.c | 6 git2r-0.21.0/git2r/src/git2r_config.c | 8 git2r-0.21.0/git2r/src/git2r_cred.c | 2 git2r-0.21.0/git2r/src/git2r_diff.c | 10 git2r-0.21.0/git2r/src/git2r_graph.c | 6 git2r-0.21.0/git2r/src/git2r_libgit2.c | 6 git2r-0.21.0/git2r/src/git2r_merge.c | 6 git2r-0.21.0/git2r/src/git2r_note.c | 12 git2r-0.21.0/git2r/src/git2r_object.c | 4 git2r-0.21.0/git2r/src/git2r_odb.c | 16 git2r-0.21.0/git2r/src/git2r_reference.c | 4 git2r-0.21.0/git2r/src/git2r_reflog.c | 2 git2r-0.21.0/git2r/src/git2r_remote.c | 18 git2r-0.21.0/git2r/src/git2r_repository.c | 12 git2r-0.21.0/git2r/src/git2r_revparse.c | 4 git2r-0.21.0/git2r/src/git2r_revwalk.c | 6 git2r-0.21.0/git2r/src/git2r_signature.c | 2 git2r-0.21.0/git2r/src/git2r_stash.c | 8 git2r-0.21.0/git2r/src/git2r_status.c | 4 git2r-0.21.0/git2r/src/git2r_tag.c | 6 git2r-0.21.0/git2r/src/libgit2/include/git2.h | 1 git2r-0.21.0/git2r/src/libgit2/include/git2/config.h | 3 git2r-0.21.0/git2r/src/libgit2/include/git2/describe.h | 2 git2r-0.21.0/git2r/src/libgit2/include/git2/diff.h | 63 git2r-0.21.0/git2r/src/libgit2/include/git2/graph.h | 3 git2r-0.21.0/git2r/src/libgit2/include/git2/patch.h | 4 git2r-0.21.0/git2r/src/libgit2/include/git2/remote.h | 38 git2r-0.21.0/git2r/src/libgit2/include/git2/repository.h | 12 git2r-0.21.0/git2r/src/libgit2/include/git2/reset.h | 8 git2r-0.21.0/git2r/src/libgit2/include/git2/status.h | 4 git2r-0.21.0/git2r/src/libgit2/include/git2/sys/config.h | 5 git2r-0.21.0/git2r/src/libgit2/include/git2/sys/remote.h |only git2r-0.21.0/git2r/src/libgit2/include/git2/types.h | 1 git2r-0.21.0/git2r/src/libgit2/src/annotated_commit.c | 2 git2r-0.21.0/git2r/src/libgit2/src/annotated_commit.h | 2 git2r-0.21.0/git2r/src/libgit2/src/apply.c | 3 git2r-0.21.0/git2r/src/libgit2/src/apply.h | 2 git2r-0.21.0/git2r/src/libgit2/src/attr.c | 10 git2r-0.21.0/git2r/src/libgit2/src/attr.h | 2 git2r-0.21.0/git2r/src/libgit2/src/attr_file.c | 11 git2r-0.21.0/git2r/src/libgit2/src/attr_file.h | 2 git2r-0.21.0/git2r/src/libgit2/src/attrcache.c | 10 git2r-0.21.0/git2r/src/libgit2/src/attrcache.h | 2 git2r-0.21.0/git2r/src/libgit2/src/blame.c | 1 git2r-0.21.0/git2r/src/libgit2/src/blame.h | 3 git2r-0.21.0/git2r/src/libgit2/src/blame_git.c | 1 git2r-0.21.0/git2r/src/libgit2/src/blame_git.h | 2 git2r-0.21.0/git2r/src/libgit2/src/blob.c | 4 git2r-0.21.0/git2r/src/libgit2/src/blob.h | 2 git2r-0.21.0/git2r/src/libgit2/src/branch.c | 3 git2r-0.21.0/git2r/src/libgit2/src/branch.h | 2 git2r-0.21.0/git2r/src/libgit2/src/buf_text.h | 2 git2r-0.21.0/git2r/src/libgit2/src/cache.c | 4 git2r-0.21.0/git2r/src/libgit2/src/cache.h | 2 git2r-0.21.0/git2r/src/libgit2/src/checkout.c | 23 git2r-0.21.0/git2r/src/libgit2/src/checkout.h | 2 git2r-0.21.0/git2r/src/libgit2/src/cherrypick.c | 1 git2r-0.21.0/git2r/src/libgit2/src/clone.c | 3 git2r-0.21.0/git2r/src/libgit2/src/clone.h | 4 git2r-0.21.0/git2r/src/libgit2/src/commit.c | 3 git2r-0.21.0/git2r/src/libgit2/src/commit.h | 2 git2r-0.21.0/git2r/src/libgit2/src/commit_list.c | 2 git2r-0.21.0/git2r/src/libgit2/src/commit_list.h | 2 git2r-0.21.0/git2r/src/libgit2/src/common.h | 8 git2r-0.21.0/git2r/src/libgit2/src/config.c | 22 git2r-0.21.0/git2r/src/libgit2/src/config.h | 2 git2r-0.21.0/git2r/src/libgit2/src/config_cache.c | 1 git2r-0.21.0/git2r/src/libgit2/src/config_file.c | 1075 +++++++--- git2r-0.21.0/git2r/src/libgit2/src/config_file.h | 6 git2r-0.21.0/git2r/src/libgit2/src/crlf.c | 3 git2r-0.21.0/git2r/src/libgit2/src/curl_stream.c |only git2r-0.21.0/git2r/src/libgit2/src/curl_stream.h |only git2r-0.21.0/git2r/src/libgit2/src/delta.h | 1 git2r-0.21.0/git2r/src/libgit2/src/describe.c | 4 git2r-0.21.0/git2r/src/libgit2/src/diff.c | 155 - git2r-0.21.0/git2r/src/libgit2/src/diff.h | 2 git2r-0.21.0/git2r/src/libgit2/src/diff_driver.c | 4 git2r-0.21.0/git2r/src/libgit2/src/diff_driver.h | 1 git2r-0.21.0/git2r/src/libgit2/src/diff_file.c | 9 git2r-0.21.0/git2r/src/libgit2/src/diff_file.h | 1 git2r-0.21.0/git2r/src/libgit2/src/diff_generate.c | 9 git2r-0.21.0/git2r/src/libgit2/src/diff_generate.h | 6 git2r-0.21.0/git2r/src/libgit2/src/diff_parse.c | 9 git2r-0.21.0/git2r/src/libgit2/src/diff_parse.h | 2 git2r-0.21.0/git2r/src/libgit2/src/diff_print.c | 2 git2r-0.21.0/git2r/src/libgit2/src/diff_stats.c | 2 git2r-0.21.0/git2r/src/libgit2/src/diff_tform.c | 3 git2r-0.21.0/git2r/src/libgit2/src/diff_tform.h | 4 git2r-0.21.0/git2r/src/libgit2/src/diff_xdiff.c | 7 git2r-0.21.0/git2r/src/libgit2/src/diff_xdiff.h | 2 git2r-0.21.0/git2r/src/libgit2/src/errors.c | 2 git2r-0.21.0/git2r/src/libgit2/src/fetch.c | 4 git2r-0.21.0/git2r/src/libgit2/src/fetch.h | 4 git2r-0.21.0/git2r/src/libgit2/src/fetchhead.c | 4 git2r-0.21.0/git2r/src/libgit2/src/fetchhead.h | 3 git2r-0.21.0/git2r/src/libgit2/src/filebuf.c | 3 git2r-0.21.0/git2r/src/libgit2/src/filebuf.h | 2 git2r-0.21.0/git2r/src/libgit2/src/fileops.c | 3 git2r-0.21.0/git2r/src/libgit2/src/fileops.h | 1 git2r-0.21.0/git2r/src/libgit2/src/filter.c | 3 git2r-0.21.0/git2r/src/libgit2/src/filter.h | 1 git2r-0.21.0/git2r/src/libgit2/src/fnmatch.c | 4 git2r-0.21.0/git2r/src/libgit2/src/global.c | 5 git2r-0.21.0/git2r/src/libgit2/src/global.h | 6 git2r-0.21.0/git2r/src/libgit2/src/graph.c | 2 git2r-0.21.0/git2r/src/libgit2/src/hash.c | 1 git2r-0.21.0/git2r/src/libgit2/src/hash.h | 2 git2r-0.21.0/git2r/src/libgit2/src/hash/hash_generic.c | 4 git2r-0.21.0/git2r/src/libgit2/src/hash/hash_generic.h | 2 git2r-0.21.0/git2r/src/libgit2/src/hash/hash_win32.c | 4 git2r-0.21.0/git2r/src/libgit2/src/hash/hash_win32.h | 1 git2r-0.21.0/git2r/src/libgit2/src/hashsig.c | 3 git2r-0.21.0/git2r/src/libgit2/src/ident.c | 2 git2r-0.21.0/git2r/src/libgit2/src/idxmap.h | 3 git2r-0.21.0/git2r/src/libgit2/src/ignore.c | 108 - git2r-0.21.0/git2r/src/libgit2/src/ignore.h | 2 git2r-0.21.0/git2r/src/libgit2/src/index.c | 4 git2r-0.21.0/git2r/src/libgit2/src/index.h | 2 git2r-0.21.0/git2r/src/libgit2/src/indexer.c | 10 git2r-0.21.0/git2r/src/libgit2/src/indexer.h | 6 git2r-0.21.0/git2r/src/libgit2/src/iterator.c | 1 git2r-0.21.0/git2r/src/libgit2/src/iterator.h | 1 git2r-0.21.0/git2r/src/libgit2/src/merge.c | 187 - git2r-0.21.0/git2r/src/libgit2/src/merge.h | 2 git2r-0.21.0/git2r/src/libgit2/src/merge_driver.c | 4 git2r-0.21.0/git2r/src/libgit2/src/merge_driver.h | 2 git2r-0.21.0/git2r/src/libgit2/src/merge_file.c | 1 git2r-0.21.0/git2r/src/libgit2/src/message.h | 2 git2r-0.21.0/git2r/src/libgit2/src/mwindow.c | 2 git2r-0.21.0/git2r/src/libgit2/src/mwindow.h | 2 git2r-0.21.0/git2r/src/libgit2/src/netops.c | 4 git2r-0.21.0/git2r/src/libgit2/src/netops.h | 3 git2r-0.21.0/git2r/src/libgit2/src/object.c | 4 git2r-0.21.0/git2r/src/libgit2/src/object.h | 2 git2r-0.21.0/git2r/src/libgit2/src/object_api.c | 5 git2r-0.21.0/git2r/src/libgit2/src/odb.c | 4 git2r-0.21.0/git2r/src/libgit2/src/odb.h | 2 git2r-0.21.0/git2r/src/libgit2/src/odb_loose.c | 1 git2r-0.21.0/git2r/src/libgit2/src/odb_mempack.c | 1 git2r-0.21.0/git2r/src/libgit2/src/odb_pack.c | 1 git2r-0.21.0/git2r/src/libgit2/src/offmap.h | 1 git2r-0.21.0/git2r/src/libgit2/src/oid.c | 3 git2r-0.21.0/git2r/src/libgit2/src/oid.h | 11 git2r-0.21.0/git2r/src/libgit2/src/oidarray.c | 3 git2r-0.21.0/git2r/src/libgit2/src/oidarray.h | 1 git2r-0.21.0/git2r/src/libgit2/src/oidmap.h | 1 git2r-0.21.0/git2r/src/libgit2/src/openssl_stream.c |only git2r-0.21.0/git2r/src/libgit2/src/openssl_stream.h |only git2r-0.21.0/git2r/src/libgit2/src/pack.c | 8 git2r-0.21.0/git2r/src/libgit2/src/pack.h | 3 git2r-0.21.0/git2r/src/libgit2/src/patch.c | 11 git2r-0.21.0/git2r/src/libgit2/src/patch.h | 2 git2r-0.21.0/git2r/src/libgit2/src/patch_generate.c | 11 git2r-0.21.0/git2r/src/libgit2/src/patch_generate.h | 1 git2r-0.21.0/git2r/src/libgit2/src/patch_parse.c | 488 ++-- git2r-0.21.0/git2r/src/libgit2/src/patch_parse.h | 17 git2r-0.21.0/git2r/src/libgit2/src/path.c | 3 git2r-0.21.0/git2r/src/libgit2/src/path.h | 14 git2r-0.21.0/git2r/src/libgit2/src/pathspec.c | 3 git2r-0.21.0/git2r/src/libgit2/src/pathspec.h | 3 git2r-0.21.0/git2r/src/libgit2/src/pool.c | 8 git2r-0.21.0/git2r/src/libgit2/src/pool.h | 1 git2r-0.21.0/git2r/src/libgit2/src/posix.c | 5 git2r-0.21.0/git2r/src/libgit2/src/posix.h | 4 git2r-0.21.0/git2r/src/libgit2/src/pqueue.c | 1 git2r-0.21.0/git2r/src/libgit2/src/pqueue.h | 2 git2r-0.21.0/git2r/src/libgit2/src/proxy.c | 9 git2r-0.21.0/git2r/src/libgit2/src/proxy.h | 3 git2r-0.21.0/git2r/src/libgit2/src/push.c | 7 git2r-0.21.0/git2r/src/libgit2/src/push.h | 2 git2r-0.21.0/git2r/src/libgit2/src/rebase.c | 1 git2r-0.21.0/git2r/src/libgit2/src/refdb.c | 5 git2r-0.21.0/git2r/src/libgit2/src/refdb.h | 2 git2r-0.21.0/git2r/src/libgit2/src/refdb_fs.c | 3 git2r-0.21.0/git2r/src/libgit2/src/refdb_fs.h | 4 git2r-0.21.0/git2r/src/libgit2/src/reflog.c | 1 git2r-0.21.0/git2r/src/libgit2/src/reflog.h | 1 git2r-0.21.0/git2r/src/libgit2/src/refs.c | 9 git2r-0.21.0/git2r/src/libgit2/src/refs.h | 1 git2r-0.21.0/git2r/src/libgit2/src/refspec.c | 4 git2r-0.21.0/git2r/src/libgit2/src/refspec.h | 2 git2r-0.21.0/git2r/src/libgit2/src/remote.c | 49 git2r-0.21.0/git2r/src/libgit2/src/remote.h | 2 git2r-0.21.0/git2r/src/libgit2/src/repository.c | 42 git2r-0.21.0/git2r/src/libgit2/src/repository.h | 2 git2r-0.21.0/git2r/src/libgit2/src/reset.c | 11 git2r-0.21.0/git2r/src/libgit2/src/revert.c | 1 git2r-0.21.0/git2r/src/libgit2/src/revparse.c | 3 git2r-0.21.0/git2r/src/libgit2/src/revwalk.c | 4 git2r-0.21.0/git2r/src/libgit2/src/revwalk.h | 2 git2r-0.21.0/git2r/src/libgit2/src/settings.c | 14 git2r-0.21.0/git2r/src/libgit2/src/sha1_lookup.c | 222 ++ git2r-0.21.0/git2r/src/libgit2/src/sha1_lookup.h | 8 git2r-0.21.0/git2r/src/libgit2/src/signature.c | 12 git2r-0.21.0/git2r/src/libgit2/src/signature.h | 2 git2r-0.21.0/git2r/src/libgit2/src/socket_stream.c |only git2r-0.21.0/git2r/src/libgit2/src/socket_stream.h |only git2r-0.21.0/git2r/src/libgit2/src/sortedcache.c | 7 git2r-0.21.0/git2r/src/libgit2/src/sortedcache.h | 2 git2r-0.21.0/git2r/src/libgit2/src/stash.c | 1 git2r-0.21.0/git2r/src/libgit2/src/status.c | 23 git2r-0.21.0/git2r/src/libgit2/src/status.h | 2 git2r-0.21.0/git2r/src/libgit2/src/stransport_stream.h |only git2r-0.21.0/git2r/src/libgit2/src/submodule.c | 16 git2r-0.21.0/git2r/src/libgit2/src/submodule.h | 2 git2r-0.21.0/git2r/src/libgit2/src/sysdir.c | 2 git2r-0.21.0/git2r/src/libgit2/src/sysdir.h | 1 git2r-0.21.0/git2r/src/libgit2/src/tag.c | 4 git2r-0.21.0/git2r/src/libgit2/src/tag.h | 2 git2r-0.21.0/git2r/src/libgit2/src/thread-utils.c | 1 git2r-0.21.0/git2r/src/libgit2/src/tls_stream.c |only git2r-0.21.0/git2r/src/libgit2/src/tls_stream.h |only git2r-0.21.0/git2r/src/libgit2/src/trace.c | 4 git2r-0.21.0/git2r/src/libgit2/src/trace.h | 2 git2r-0.21.0/git2r/src/libgit2/src/transaction.c | 3 git2r-0.21.0/git2r/src/libgit2/src/transport.c | 2 git2r-0.21.0/git2r/src/libgit2/src/transports/auth.c | 3 git2r-0.21.0/git2r/src/libgit2/src/transports/auth.h | 2 git2r-0.21.0/git2r/src/libgit2/src/transports/auth_negotiate.h | 1 git2r-0.21.0/git2r/src/libgit2/src/transports/cred.c | 2 git2r-0.21.0/git2r/src/libgit2/src/transports/cred.h | 2 git2r-0.21.0/git2r/src/libgit2/src/transports/cred_helpers.c | 1 git2r-0.21.0/git2r/src/libgit2/src/transports/git.c | 4 git2r-0.21.0/git2r/src/libgit2/src/transports/http.c | 9 git2r-0.21.0/git2r/src/libgit2/src/transports/local.c | 3 git2r-0.21.0/git2r/src/libgit2/src/transports/smart.c | 4 git2r-0.21.0/git2r/src/libgit2/src/transports/smart.h | 3 git2r-0.21.0/git2r/src/libgit2/src/transports/smart_protocol.c | 15 git2r-0.21.0/git2r/src/libgit2/src/transports/ssh.c | 11 git2r-0.21.0/git2r/src/libgit2/src/transports/ssh.h | 2 git2r-0.21.0/git2r/src/libgit2/src/transports/winhttp.c | 4 git2r-0.21.0/git2r/src/libgit2/src/tree-cache.c | 1 git2r-0.21.0/git2r/src/libgit2/src/tree-cache.h | 1 git2r-0.21.0/git2r/src/libgit2/src/tree.c | 4 git2r-0.21.0/git2r/src/libgit2/src/tree.h | 2 git2r-0.21.0/git2r/src/libgit2/src/tsort.c | 1 git2r-0.21.0/git2r/src/libgit2/src/unix/map.c | 5 git2r-0.21.0/git2r/src/libgit2/src/unix/posix.h | 8 git2r-0.21.0/git2r/src/libgit2/src/unix/realpath.c | 5 git2r-0.21.0/git2r/src/libgit2/src/util.c | 6 git2r-0.21.0/git2r/src/libgit2/src/util.h | 144 + git2r-0.21.0/git2r/src/libgit2/src/varint.c | 1 git2r-0.21.0/git2r/src/libgit2/src/varint.h | 2 git2r-0.21.0/git2r/src/libgit2/src/vector.c | 2 git2r-0.21.0/git2r/src/libgit2/src/win32/dir.c | 3 git2r-0.21.0/git2r/src/libgit2/src/win32/dir.h | 1 git2r-0.21.0/git2r/src/libgit2/src/win32/error.c | 2 git2r-0.21.0/git2r/src/libgit2/src/win32/error.h | 2 git2r-0.21.0/git2r/src/libgit2/src/win32/findfile.c | 3 git2r-0.21.0/git2r/src/libgit2/src/win32/findfile.h | 2 git2r-0.21.0/git2r/src/libgit2/src/win32/map.c | 2 git2r-0.21.0/git2r/src/libgit2/src/win32/path_w32.c | 19 git2r-0.21.0/git2r/src/libgit2/src/win32/path_w32.h | 1 git2r-0.21.0/git2r/src/libgit2/src/win32/posix_w32.c | 16 git2r-0.21.0/git2r/src/libgit2/src/win32/precompiled.h | 3 git2r-0.21.0/git2r/src/libgit2/src/win32/thread.h | 2 git2r-0.21.0/git2r/src/libgit2/src/win32/utf-conv.c | 1 git2r-0.21.0/git2r/src/libgit2/src/win32/utf-conv.h | 3 git2r-0.21.0/git2r/src/libgit2/src/win32/w32_buffer.c | 2 git2r-0.21.0/git2r/src/libgit2/src/win32/w32_buffer.h | 2 git2r-0.21.0/git2r/src/libgit2/src/win32/w32_util.h | 2 git2r-0.21.0/git2r/src/libgit2/src/worktree.c | 3 git2r-0.21.0/git2r/src/libgit2/src/worktree.h | 2 git2r-0.21.0/git2r/src/libgit2/src/xdiff/xdiff.h | 2 git2r-0.21.0/git2r/src/libgit2/src/xdiff/xdiffi.c | 611 ----- git2r-0.21.0/git2r/src/libgit2/src/zstream.c | 3 git2r-0.21.0/git2r/src/libgit2/src/zstream.h | 3 290 files changed, 2293 insertions(+), 2663 deletions(-)
Title: Plots Coefficients from Fitted Models
Description: Plots the coefficients from model objects. This very quickly shows the user the point estimates and confidence intervals for fitted models.
Author: Jared P. Lander
Maintainer: Jared P. Lander <packages@jaredlander.com>
Diff between coefplot versions 1.2.4 dated 2016-01-10 and 1.2.5 dated 2018-01-04
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Title: Multiscale Codependence Analysis
Description: Computation of Multiscale Codependence Analysis and spatial eigenvector maps, as an additional feature. Early development version.
Author: Guillaume Guenard and Pierre Legendre, with contributions from Bertrand Pages
Maintainer: Guillaume Guenard <guillaume.guenard@gmail.com>
Diff between codep versions 0.6-5 dated 2017-01-25 and 0.7-1 dated 2018-01-04
codep-0.6-5/codep/man/mca-class.Rd |only codep-0.7-1/codep/DESCRIPTION | 8 +++--- codep-0.7-1/codep/MD5 | 21 ++++++++-------- codep-0.7-1/codep/NAMESPACE | 14 +++++----- codep-0.7-1/codep/R/mca.R | 32 ++++++++++++------------ codep-0.7-1/codep/man/cdp-class.Rd |only codep-0.7-1/codep/man/codep-package.Rd | 12 ++++----- codep-0.7-1/codep/man/mca.Rd | 34 ++++++++++++-------------- codep-0.7-1/codep/man/minpermute.Rd | 10 +++---- codep-0.7-1/codep/man/product-distribution.Rd | 4 +-- codep-0.7-1/codep/src/codep.c | 2 - codep-0.7-1/codep/src/codep.h | 2 - codep-0.7-1/codep/src/registerDynamicSymbol.c |only 13 files changed, 69 insertions(+), 70 deletions(-)
Title: Fluid Data Transformations
Description: Supplies higher-order fluid data transform operators that include pivot and anti-pivot as special cases. Based on the 'DBI' database interface.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between cdata versions 0.5.0 dated 2017-11-12 and 0.5.1 dated 2018-01-04
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Title: Discrete-Event Simulation for R
Description: A process-oriented and trajectory-based Discrete-Event Simulation
(DES) package for R. It is designed as a generic yet powerful framework. The
architecture encloses a robust and fast simulation core written in C++ with
automatic monitoring capabilities. It provides a rich and flexible R API that
revolves around the concept of trajectory, a common path in the simulation
model for entities of the same type.
Author: Iñaki Ucar [aut, cph, cre] (0000-0001-6403-5550),
Bart Smeets [aut, cph]
Maintainer: Iñaki Ucar <i.ucar86@gmail.com>
Diff between simmer versions 3.6.4 dated 2017-11-04 and 3.6.5 dated 2018-01-04
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Title: Causal Mediation Analysis Using Weighting Approach
Description: We implement causal mediation analysis using the methods proposed by Hong (2010) and Hong, Deutsch & Hill (2015) <doi:10.3102/1076998615583902>. It allows the estimation and hypothesis testing of causal mediation effects through ratio of mediator probability weights (RMPW). This strategy conveniently relaxes the assumption of no treatment-by-mediator interaction while greatly simplifying the outcome model specification without invoking strong distributional assumptions. We also implement a sensitivity analysis by extending the RMPW method to assess potential bias in the presence of omitted pretreatment or posttreatment covariates. The sensitivity analysis strategy was proposed by Hong, Qin, and Yang (2018) <doi:10.3102/1076998617749561>.
Author: Xu Qin, Guanglei Hong, and Fan Yang
Maintainer: Xu Qin <xuqin@uchicago.edu>
Diff between rmpw versions 0.0.2 dated 2017-12-21 and 0.0.3 dated 2018-01-04
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- build/partial.rdb |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Probabilistic and Possibilistic Cluster Analysis
Description: Partitioning clustering divides the objects in a data set into non-overlapping subsets or clusters by using the prototype-based probabilistic and possibilistic clustering algorithms. This package covers a set of the functions for Fuzzy C-Means (Bezdek, 1974) <doi:10.1080/01969727308546047>, Possibilistic C-Means (Krishnapuram & Keller, 1993) <doi:10.1109/91.227387>, Possibilistic Fuzzy C-Means (Pal et al, 2005) <doi:10.1109/TFUZZ.2004.840099>, Possibilistic Clustering Algorithm (Yang et al, 2006) <doi:10.1016/j.patcog.2005.07.005>, Possibilistic C-Means with Repulsion (Wachs et al, 2006) <doi:10.1007/3-540-31662-0_6> and the other variants of hard and soft clustering algorithms. The cluster prototypes and membership matrices required by these partitioning algorithms are initialized with different initialization techniques that are available in the package 'inaparc'. As the distance metrics, not only the Euclidean distance but also a set of the commonly used distance metrics are available to use with some of the algorithms in the package.
Author: Zeynel Cebeci [aut, cre], Figen Yildiz [aut], Alper Tuna Kavlak [aut], Cagatay Cebeci [aut], Hasan Onder [aut]
Maintainer: Zeynel Cebeci <zcebeci@cukurova.edu.tr>
Diff between ppclust versions 0.1.0 dated 2017-11-29 and 0.1.1 dated 2018-01-04
DESCRIPTION | 14 - MD5 | 34 ++-- NAMESPACE | 1 build/vignette.rds |binary inst/NEWS.Rd | 7 inst/doc/fcm.Rmd | 16 +- inst/doc/fcm.html | 391 +++++++++++++++++++++++++++++++++++------------------ inst/doc/pcm.Rmd | 19 +- inst/doc/pcm.pdf |binary inst/doc/pfcm.Rmd | 4 inst/doc/pfcm.html | 82 +++++------ inst/doc/upfc.Rmd | 4 inst/doc/upfc.html | 36 ++-- man/gg.Rd | 6 vignettes/fcm.Rmd | 16 +- vignettes/pcm.Rmd | 19 +- vignettes/pfcm.Rmd | 4 vignettes/upfc.Rmd | 4 18 files changed, 403 insertions(+), 254 deletions(-)
Title: Fast Multivariate Normal and Student's t Methods
Description: Provides computationally efficient tools related to
the multivariate normal and Student's t distributions. The main functionalities are:
simulating multivariate random vectors, evaluating multivariate
normal or Student's t densities and Mahalanobis distances. These tools are very efficient
thanks to the use of C++ code and of the OpenMP API.
Author: Matteo Fasiolo [aut, cre],
Thijs van den Berg [ctb]
Maintainer: Matteo Fasiolo <matteo.fasiolo@gmail.com>
Diff between mvnfast versions 0.2.2 dated 2017-08-14 and 0.2.4 dated 2018-01-04
ChangeLog |only DESCRIPTION | 17 +- MD5 | 47 +++---- R/dmvn.R | 2 R/dmvt.R | 2 R/maha.R | 2 R/ms.R | 5 R/rmvn.R | 2 R/rmvt.R | 2 build/vignette.rds |binary inst/doc/mvnfast.Rmd | 18 +- inst/doc/mvnfast.html | 308 +++++++++++++++++++++++++++++++++++++++----------- inst/tests/test-ms.R | 4 man/ms.Rd | 3 src/Makevars | 2 src/Makevars.win | 9 - src/dmixtCpp.cpp | 2 src/dmvtCpp.cpp | 2 src/mahaCpp.cpp | 2 src/msCpp.cpp | 2 src/rmixnCpp.cpp | 2 src/rmixtCpp.cpp | 2 src/rmvnCpp.cpp | 2 src/rmvtCpp.cpp | 2 vignettes/mvnfast.Rmd | 18 +- 25 files changed, 325 insertions(+), 132 deletions(-)
Title: Sensitivity Analysis Tools for LSD
Description: Tools for sensitivity analysis of LSD simulation models. Reads object-oriented data produced by LSD simulation models and performs screening and global sensitivity analysis (Sobol decomposition method, Saltelli et al. (2008) ISBN:9780470725177). A Kriging or polynomial meta-model (Kleijnen (2009) <doi:10.1016/j.ejor.2007.10.013>) is estimated using the simulation data to provide the data required by the Sobol decomposition. LSD (Laboratory for Simulation Development) is free software developed by Marco Valente (documentation and downloads available at <http://labsimdev.org>).
Author: Marcelo C. Pereira
Maintainer: Marcelo C. Pereira <marcelocpereira@uol.com.br>
Diff between LSDsensitivity versions 0.1.2 dated 2017-11-29 and 0.1.4 dated 2018-01-04
DESCRIPTION | 15 ++++++++------- MD5 | 9 +++++---- NAMESPACE | 13 ++----------- R/morris.R |only R/morris_oat.R | 11 +++++------ build/partial.rdb |binary 6 files changed, 20 insertions(+), 28 deletions(-)
More information about LSDsensitivity at CRAN
Permanent link
Title: Classification, Regression and Feature Evaluation
Description: A suite of machine learning algorithms written in C++ with the R
interface contains several learning techniques for classification and regression.
Predictive models include e.g., classification and regression trees with
optional constructive induction and models in the leaves, random forests, kNN,
naive Bayes, and locally weighted regression. All predictions obtained with these
models can be explained and visualized with the 'ExplainPrediction' package.
This package is especially strong in feature evaluation where it contains several variants of
Relief algorithm and many impurity based attribute evaluation functions, e.g., Gini,
information gain, MDL, and DKM. These methods can be used for feature selection
or discretization of numeric attributes.
The OrdEval algorithm and its visualization is used for evaluation
of data sets with ordinal features and class, enabling analysis according to the
Kano model of customer satisfaction.
Several algorithms support parallel multithreaded execution via OpenMP.
The top-level documentation is reachable through ?CORElearn.
Author: Marko Robnik-Sikonja and Petr Savicky
Maintainer: "Marko Robnik-Sikonja" <marko.robnik@fri.uni-lj.si>
Diff between CORElearn versions 1.51.2 dated 2017-08-08 and 1.52.0 dated 2018-01-04
ChangeLog | 1 DESCRIPTION | 8 MD5 | 10 R/Rinterface.R | 2444 +++++++++++++++++++++++++++---------------------------- src/Rfront.cpp | 2 src/frontend.cpp | 2 6 files changed, 1243 insertions(+), 1224 deletions(-)
Title: Statistical Methods for Phenology Analysis in Temperate Fruit
Trees
Description: The phenology of plants (i.e. the timing of their annual life
phases) depends on climatic cues. For temperate trees and many other plants,
spring phases, such as leaf emergence and flowering, have been found to result
from the effects of both cool (chilling) conditions and heat. Fruit tree
scientists (pomologists) have developed some metrics to quantify chilling
and heat. 'chillR' contains functions for processing temperature records into
chilling (Chilling Hours, Utah Chill Units and Chill Portions) and heat units
(Growing Degree Hours). Regarding chilling metrics, Chill Portions are often
considered the most promising, but they are difficult to calculate. This package
makes it easy. 'chillR' also contains procedures for conducting a PLS analysis
relating phenological dates (e.g. bloom dates) to either mean temperatures or
mean chill and heat accumulation rates, based on long-term weather and phenology
records. As of version 0.65, it also includes functions for generating weather
scenarios with a weather generator, for conducting climate change analyses
for temperature-based climatic metrics and for plotting results from such
analyses.
Author: Eike Luedeling
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between chillR versions 0.66 dated 2017-03-24 and 0.70.0 dated 2018-01-04
DESCRIPTION | 14 - MD5 | 186 ++++++++++++--------- NAMESPACE | 15 + R/Date2YEARMODA.R |only R/RMSEP_RPD.R |only R/bloom_prediction.R | 33 +-- R/bloom_prediction2.R |only R/check_temperature_record.R |only R/chillR-package.R | 29 +++ R/daylength.R |only R/filter_temperatures.R |only R/fix_weather.R | 2 R/handle_chile_agromet.R | 4 R/handle_cimis.R | 126 ++++++++------ R/handle_gsod.R | 23 +- R/handle_ucipm.R | 6 R/handle_wunderground.R | 4 R/interpolate_gaps_hourly.R |only R/make_all_day_table.R | 212 ++++++++++++++++++++---- R/make_hourly_temps.R | 110 +++++++----- R/patch_daily_temperatures.R |only R/plot_pheno_results.R | 18 +- R/runn_mean.R | 48 +++-- R/stack_hourly_temps.R | 33 ++- R/stage_transitions.R |only R/tempResponse.R | 10 + R/tempResponse_hourtable.R |only R/temp_models.R | 46 +++++ R/temperature_generation.R | 5 build |only data/Winters_hours_gaps.rda |only inst |only man/Chilling_Hours.Rd | 7 man/Date2YEARMODA.Rd |only man/Dynamic_Model.Rd | 7 man/GDD.Rd | 7 man/GDH.Rd | 7 man/GDH_model.Rd |only man/KA_bloom.Rd | 1 man/KA_weather.Rd | 1 man/PLS_chill_force.Rd | 7 man/PLS_pheno.Rd | 7 man/RMSEP.Rd |only man/RPD.Rd |only man/RPIQ.Rd |only man/Utah_Model.Rd | 7 man/VIP.Rd | 11 - man/Winters_hours_gaps.Rd |only man/YEARMODA2Date.Rd | 1 man/bloom_prediction.Rd | 7 man/bloom_prediction2.Rd |only man/california_stations.Rd | 1 man/check_temperature_record.Rd |only man/check_temperature_scenario.Rd | 1 man/chile_agromet2chillR.Rd | 7 man/chillR-package.Rd | 9 - man/chilling.Rd | 7 man/chilling_hourtable.Rd | 7 man/color_bar_maker.Rd | 7 man/daily_chill.Rd | 7 man/daylength.Rd |only man/extract_differences_between_characters.Rd | 1 man/extract_temperatures_from_grids.Rd | 1 man/filter_temperatures.Rd |only man/fix_weather.Rd | 1 man/get_last_date.Rd | 1 man/get_weather.Rd | 7 man/handle_chile_agromet.Rd | 7 man/handle_cimis.Rd | 7 man/handle_gsod.Rd | 7 man/handle_ucipm.Rd | 7 man/handle_wunderground.Rd | 7 man/identify_common_string.Rd | 1 man/interpolate_gaps.Rd | 7 man/interpolate_gaps_hourly.Rd |only man/leap_year.Rd | 7 man/make_JDay.Rd | 7 man/make_all_day_table.Rd | 67 ++++++- man/make_california_UCIPM_station_list.Rd | 7 man/make_chill_plot.Rd | 1 man/make_climate_scenario_from_files.Rd | 1 man/make_daily_chill_figures.Rd | 7 man/make_daily_chill_plot.Rd | 1 man/make_hourly_temps.Rd | 13 - man/make_multi_pheno_trend_plot.Rd | 1 man/make_pheno_trend_plot.Rd | 7 man/ordered_climate_list.Rd | 1 man/patch_daily_temperatures.Rd |only man/plot_PLS.Rd | 7 man/plot_climate_scenarios.Rd | 1 man/read_tab.Rd | 1 man/runn_mean.Rd | 13 + man/select_by_file_extension.Rd | 1 man/stack_hourly_temps.Rd | 16 + man/stage_transitions.Rd |only man/step_model.Rd | 1 man/tempResponse.Rd | 16 + man/tempResponse_hourtable.Rd |only man/temperature_generation.Rd | 1 man/temperature_scenario_baseline_adjustment.Rd | 1 man/temperature_scenario_from_records.Rd | 1 man/test_if_equal.Rd | 1 man/weather2chillR.Rd | 7 vignettes |only 104 files changed, 830 insertions(+), 451 deletions(-)
Title: Best Subset Selection in Linear, Logistic and CoxPH Models
Description: An implementation of best subset selection in generalized linear model and Cox proportional hazard model via the primal dual active set algorithm proposed by Wen, C., Zhang, A., Quan, S. and Wang, X. (2017) <arXiv:1709.06254>. The algorithm formulates coefficient parameters and residuals as primal and dual variables and utilizes efficient active set selection strategies based on the complementarity of the primal and dual variables.
Author: Canhong Wen, Aijun Zhang, Shijie Quan, Xueqin Wang
Maintainer: Canhong Wen <wencanhong@gmail.com>
Diff between BeSS versions 1.0.3 dated 2017-08-22 and 1.0.4 dated 2018-01-04
DESCRIPTION | 13 - MD5 | 72 +++-- NAMESPACE | 7 R/RcppExports.R | 20 + R/bess.R | 606 +++++++++++++++++++++++++---------------------- R/bess.cox.R | 43 +-- R/bess.glm.R | 168 ++++++------- R/bess.lm.R | 114 +++++--- R/bess.one.R | 28 +- R/coef.bess.R | 10 R/gbess.glm.R |only R/gbess.lm.R |only R/gen.data.R | 134 +++++----- R/plot.bess.R | 3 R/predict.bess.R | 59 +++- R/print.bess.R | 4 R/print.bess.one.R |only R/summary.bess.R | 48 +++ R/summary.bess.one.R |only data/SAheart.RData |only data/prostate.RData |only man/SAheart.Rd |only man/aic.Rd | 2 man/bess-internal.Rd | 23 + man/bess.Rd | 53 +++- man/bess.one.Rd | 47 ++- man/coef.bess.Rd | 6 man/coef.bess.one.Rd |only man/deviance.bess.Rd | 6 man/deviance.bess.one.Rd |only man/gen.data.Rd | 2 man/gravier.Rd | 6 man/logLik.bess.Rd | 8 man/logLik.bess.one.Rd |only man/plot.bess.Rd | 2 man/predict.bess.Rd | 11 man/predict.bess.one.Rd |only man/print.bess.Rd | 4 man/print.bess.one.Rd |only man/prostate.Rd |only man/summary.bess.Rd |only man/summary.bess.one.Rd |only src/RcppExports.cpp | 76 +++++ src/bess.cpp | 103 ++++--- src/group.cpp |only 45 files changed, 994 insertions(+), 684 deletions(-)
Title: Bayesian Inference of Landscape Occupancy from Presence-Only
Data
Description: Natural history museums and herbaria collectively hold hundreds of millions of zoological, botanical, and paleontological specimens. These collections serve as the foundation for understanding the distribution of life on Earth and the basis for addressing loss of biodiversity, emerging diseases, and other pressing global problems as well as important question in ecology and evolution. One of the short comings of these kind of data is that the lack of evidence of the presence of a species in a certain region does not mean the species is truly absent there. Likewise, specimens are often misidentified, and therefore the report of a species in a locality is not always evidence that a viable population occurs there. The goal of this project is to develop a method which could be used to estimate the probability of presence of a species in a certain study region based on certain sampling effort and presence reports.
Author: Camilo Sanin [aut, cre, cph],
Adam B. Smith [aut, cph],
Missouri Botanical Garden [cph],
Trustees of Columbia University [cph]
Maintainer: Camilo Sanin <camilosanin@gmail.com>
Diff between bayesLopod versions 1.0.0 dated 2017-11-27 and 1.0.1 dated 2018-01-04
bayesLopod-1.0.0/bayesLopod/exec/psyip.stan |only bayesLopod-1.0.0/bayesLopod/exec/psyip_CAR.stan |only bayesLopod-1.0.0/bayesLopod/exec/psyipi.stan |only bayesLopod-1.0.0/bayesLopod/exec/psyipi_CAR.stan |only bayesLopod-1.0.0/bayesLopod/exec/psyipiq.stan |only bayesLopod-1.0.0/bayesLopod/exec/psyipiq_CAR.stan |only bayesLopod-1.0.0/bayesLopod/exec/psyipq.stan |only bayesLopod-1.0.0/bayesLopod/exec/psyipq_CAR.stan |only bayesLopod-1.0.1/bayesLopod/DESCRIPTION | 12 bayesLopod-1.0.1/bayesLopod/MD5 | 42 bayesLopod-1.0.1/bayesLopod/NEWS.md | 5 bayesLopod-1.0.1/bayesLopod/R/lopodRaster.R | 8 bayesLopod-1.0.1/bayesLopod/R/lopodShape.R | 12 bayesLopod-1.0.1/bayesLopod/R/lopodSummary.R | 2 bayesLopod-1.0.1/bayesLopod/R/modelLopod.R | 32 bayesLopod-1.0.1/bayesLopod/R/modelParams.R | 32 bayesLopod-1.0.1/bayesLopod/README.md | 48 bayesLopod-1.0.1/bayesLopod/exec/psiip.stan |only bayesLopod-1.0.1/bayesLopod/exec/psiip_CAR.stan |only bayesLopod-1.0.1/bayesLopod/exec/psiipi.stan |only bayesLopod-1.0.1/bayesLopod/exec/psiipi_CAR.stan |only bayesLopod-1.0.1/bayesLopod/exec/psiipiq.stan |only bayesLopod-1.0.1/bayesLopod/exec/psiipiq_CAR.stan |only bayesLopod-1.0.1/bayesLopod/exec/psiipq.stan |only bayesLopod-1.0.1/bayesLopod/exec/psiipq_CAR.stan |only bayesLopod-1.0.1/bayesLopod/man/lopodRaster.Rd | 8 bayesLopod-1.0.1/bayesLopod/man/lopodShape.Rd | 12 bayesLopod-1.0.1/bayesLopod/man/lopodSummary.Rd | 2 bayesLopod-1.0.1/bayesLopod/src/Modules.cpp | 272 bayesLopod-1.0.1/bayesLopod/src/include/models.hpp | 7736 +++++++++++---------- 30 files changed, 4344 insertions(+), 3879 deletions(-)
Title: Tools for Combinatorics and Computational Mathematics
Description: Provides optimized functions implemented in C++ with 'Rcpp'
for solving problems in combinatorics and computational mathematics.
There is a combination function and a permutation function that are
both flexible as well as efficient with respect to speed and memory.
There are optional constraint parameters that when utilized, generate
all combinations/permutations of a vector meeting a specific criteria
(E.g. finding all combinations such that the sum is less than a
bound). Both functions are capable of handling mulitsets as well.
Additionally, there are various sieving functions that quickly
generate essential components for problems common in computational
mathematics (E.g. number of coprime elements, divisors, prime
factorizations, and complete factorizations for many numbers as
well as primes numbers in a range).
Author: Joseph Wood
Maintainer: Joseph Wood <jwood000@gmail.com>
Diff between RcppAlgos versions 0.2.4 dated 2017-12-18 and 0.2.5 dated 2018-01-04
RcppAlgos-0.2.4/RcppAlgos/src/ExpTableC.cpp |only RcppAlgos-0.2.5/RcppAlgos/DESCRIPTION | 12 ++-- RcppAlgos-0.2.5/RcppAlgos/MD5 | 29 +++++++---- RcppAlgos-0.2.5/RcppAlgos/NEWS | 16 ++++-- RcppAlgos-0.2.5/RcppAlgos/R/RcppExports.R | 4 - RcppAlgos-0.2.5/RcppAlgos/README.md | 10 +--- RcppAlgos-0.2.5/RcppAlgos/man/combinatoricsGeneral.Rd | 10 ++-- RcppAlgos-0.2.5/RcppAlgos/src/CombPermUtility.cpp | 4 + RcppAlgos-0.2.5/RcppAlgos/src/CombinatoricsContainer.cpp | 26 +++++----- RcppAlgos-0.2.5/RcppAlgos/src/DivisorSieveContainer.cpp | 8 +-- RcppAlgos-0.2.5/RcppAlgos/src/PrimesContainer.cpp | 37 +++++++++++---- RcppAlgos-0.2.5/RcppAlgos/src/RcppExports.cpp | 12 ---- RcppAlgos-0.2.5/RcppAlgos/tests |only 13 files changed, 94 insertions(+), 74 deletions(-)
Title: Get Data from the 'KOF Datenservice' API
Description: Read Swiss time series data from the 'KOF Datenservice' API, <https://datenservice.kof.ethz.ch>. The API provides macroeconomic survey data, business cycle and further macro economic time series about Switzerland. The package itself is a set of wrappers around the 'KOF Datenservice' API. The 'kofdata' package is able to consume public information as well as data that requires an API token.
Author: Matthias Bannert [aut, cre],
Severin Thoeni [aut]
Maintainer: Matthias Bannert <bannert@kof.ethz.ch>
Diff between kofdata versions 0.1 dated 2017-11-12 and 0.1.1 dated 2018-01-04
DESCRIPTION | 6 +++--- MD5 | 11 +++++++---- NAMESPACE | 1 + NEWS |only R/get_dataset.R | 2 +- R/json_to_ts.R | 1 + R/translate_legacy_key.R |only man/translate_legacy_key.Rd |only 8 files changed, 13 insertions(+), 8 deletions(-)
Title: Kalman Filter and Smoother for Exponential Family State Space
Models
Description: State space modelling is an efficient and flexible method for
statistical inference of a broad class of time series and other data. KFAS
includes fast functions for Kalman filtering, smoothing, forecasting, and
simulation of multivariate exponential family state space models, with
observations from Gaussian, Poisson, binomial, negative binomial, and gamma
distributions.
Author: Jouni Helske <jouni.helske@iki.fi>
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between KFAS versions 1.3.0 dated 2017-12-08 and 1.3.1 dated 2018-01-04
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/KFAS.pdf |binary src/filter1step.f95 | 4 ++-- 6 files changed, 14 insertions(+), 11 deletions(-)
Title: Toolkit Implementation of gWidgets for RGtk2
Description: Port of the gWidgets API to the RGtk2 toolkit.
Author: Michael Lawrence, John Verzani
Maintainer: John Verzani <jverzani@gmail.com>
Diff between gWidgetsRGtk2 versions 0.0-84 dated 2017-07-17 and 0.0-85 dated 2018-01-04
DESCRIPTION | 7 ++++--- MD5 | 34 +++++++++++++++++----------------- R/aacR5Classes.R | 20 ++++++++++---------- R/gbutton.R | 4 ++-- R/gcheckbox.R | 10 +++++----- R/gdfedit.R | 26 +++++++++++++------------- R/gdialogs.R | 2 +- R/gdroplist.R | 8 ++++---- R/gedit.R | 2 +- R/ggraphics.R | 34 +++++++++++++++++----------------- R/ghtml.R | 4 ++-- R/gradio.R | 4 ++-- R/gslider.R | 8 ++++---- R/gtext.R | 2 +- R/gtkStuff.R | 38 +++++++++++++++++++------------------- R/gtree.R | 16 ++++++++-------- R/gvarbrowser.R | 40 ++++++++++++++++++++-------------------- R/gwindow.R | 12 ++++++------ 18 files changed, 136 insertions(+), 135 deletions(-)
Title: Implementation of gWidgets2 for the RGtk2 Package
Description: Implements the 'gWidgets2' API for 'RGtk2.'
Author: John Verzani
Maintainer: John Verzani <jverzani@gmail.com>
Diff between gWidgets2RGtk2 versions 1.0-6 dated 2017-07-10 and 1.0-7 dated 2018-01-04
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++-------- R/gbutton.R | 2 - man/add_editable_cell_renderer.Rd | 1 man/ensure_type.Rd | 1 man/gWidgets2RGtk2-package.Rd | 36 +++++++++++++++++--------------- man/gWidgets2RGtk2-undocumented.Rd | 40 ++++++++++++++++++++---------------- man/guiWidgetsToolkitRGtk2-class.Rd | 1 man/isFirstMouseClick.Rd | 1 man/isRightMouseClick.Rd | 1 10 files changed, 56 insertions(+), 53 deletions(-)
More information about gWidgets2RGtk2 at CRAN
Permanent link
Title: Mixed Effects Cox Models
Description: Cox proportional hazards models containing Gaussian random
effects, also known as frailty models.
Author: Terry M. Therneau [aut, cre]
Maintainer: Terry M. Therneau <therneau@mayo.edu>
Diff between coxme versions 2.2-5 dated 2015-06-15 and 2.2-7 dated 2018-01-04
coxme-2.2-5/coxme/noweb/noweb.sty |only coxme-2.2-7/coxme/DESCRIPTION | 7 -- coxme-2.2-7/coxme/MD5 | 56 ++++++++--------- coxme-2.2-7/coxme/NAMESPACE | 10 ++- coxme-2.2-7/coxme/R/bdsmatrix.R | 2 coxme-2.2-7/coxme/R/coxme.fit.R | 91 ++++++++++++++--------------- coxme-2.2-7/coxme/R/print.coxme.R | 2 coxme-2.2-7/coxme/build/vignette.rds |binary coxme-2.2-7/coxme/inst/NEWS.Rd | 21 ++++++ coxme-2.2-7/coxme/inst/doc/coxme.pdf |binary coxme-2.2-7/coxme/inst/doc/laplace.pdf |binary coxme-2.2-7/coxme/inst/doc/lmekin.pdf |binary coxme-2.2-7/coxme/inst/doc/variance.pdf |binary coxme-2.2-7/coxme/man/coxme.Rd | 16 ++--- coxme-2.2-7/coxme/man/coxme.object.Rd | 2 coxme-2.2-7/coxme/man/lmekin.Rd | 1 coxme-2.2-7/coxme/noweb/Makefile | 14 ++-- coxme-2.2-7/coxme/noweb/all.nw | 100 +++++++++++++++----------------- coxme-2.2-7/coxme/noweb/bdsmatrix.Rnw | 2 coxme-2.2-7/coxme/noweb/fit.Rnw | 97 +++++++++++++++---------------- coxme-2.2-7/coxme/noweb/main.Rnw | 1 coxme-2.2-7/coxme/src/agfit6b.c | 35 ++++++++--- coxme-2.2-7/coxme/src/agfit6d.c | 3 coxme-2.2-7/coxme/src/bdsmatrix_stub.h | 74 ++++++++++++++++------- coxme-2.2-7/coxme/src/coxfit6a.c | 2 coxme-2.2-7/coxme/src/coxfit6b.c | 38 +++++++++--- coxme-2.2-7/coxme/src/coxfit6d.c | 3 coxme-2.2-7/coxme/src/init.c |only coxme-2.2-7/coxme/tests/test1.Rout.save | 19 +----- coxme-2.2-7/coxme/tests/test4.Rout.save | 16 +---- 30 files changed, 341 insertions(+), 271 deletions(-)
Title: Read-Write Support for 'NumPy' Files via 'Rcpp'
Description: The 'cnpy' library written by Carl Rogers provides read and write
facilities for files created with (or for) the 'NumPy' extension for 'Python'.
Vectors and matrices of numeric types can be read or written to and from
files as well as compressed files. Support for integer files is available if
the package has been built with -std=c++11 which is the default starting
with release 0.2.3 following the release of R 3.1.0, and available on all
platforms following the release of R 3.3.0 with the updated 'Rtools'.
Author: Dirk Eddelbuettel and Wush Wu
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppCNPy versions 0.2.7 dated 2017-09-22 and 0.2.8 dated 2018-01-04
ChangeLog | 7 +++++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- build/vignette.rds |binary inst/NEWS.Rd | 7 +++++++ inst/doc/RcppCNPy-intro.R | 1 + inst/doc/RcppCNPy-intro.Rmd | 1 + inst/doc/RcppCNPy-intro.pdf |binary vignettes/RcppCNPy-intro.Rmd | 1 + 9 files changed, 29 insertions(+), 12 deletions(-)
Title: Linear Regression with Non-Constant Variances
Description: Runs a linear regression in which both the expected value and the variance can vary per observation. The expected values mu follows the standard linear model mu = X_mu * beta_mu. The standard deviation sigma follows the model log(sigma) = X_sigma * beta_sigma. The package comes with two vignettes: 'Intro' gives an introduction, 'Math' gives mathematical details.
Author: Posthuma Partners <info@posthuma-partners.nl>
Maintainer: Marco Nijmeijer <nijmeijer@posthuma-partners.nl>
Diff between lmvar versions 1.3.0 dated 2017-09-07 and 1.4.0 dated 2018-01-04
lmvar-1.3.0/lmvar/R/alias.lmvar.R |only lmvar-1.3.0/lmvar/R/examples/fwbw.lmvar_examples.R |only lmvar-1.3.0/lmvar/R/fwbw.lmvar.R |only lmvar-1.3.0/lmvar/R/nobs.lmvar.R |only lmvar-1.3.0/lmvar/man/alias.lmvar.Rd |only lmvar-1.3.0/lmvar/man/fwbw.lmvar.Rd |only lmvar-1.3.0/lmvar/man/nobs.lmvar.Rd |only lmvar-1.4.0/lmvar/DESCRIPTION | 10 lmvar-1.4.0/lmvar/MD5 | 99 ++++---- lmvar-1.4.0/lmvar/NAMESPACE | 7 lmvar-1.4.0/lmvar/NEWS.md | 29 ++ lmvar-1.4.0/lmvar/R/alias.lmvar_no_fit.R |only lmvar-1.4.0/lmvar/R/cv.lm.R | 4 lmvar-1.4.0/lmvar/R/cv.lmvar.R | 4 lmvar-1.4.0/lmvar/R/dfree.R | 6 lmvar-1.4.0/lmvar/R/examples/alias_examples.R | 4 lmvar-1.4.0/lmvar/R/examples/dfree_examples.R | 4 lmvar-1.4.0/lmvar/R/examples/fwbw.lmvar_no_fit_examples.R |only lmvar-1.4.0/lmvar/R/examples/lmvar_no_fit_examples.R |only lmvar-1.4.0/lmvar/R/examples/nobs_examples.R | 5 lmvar-1.4.0/lmvar/R/examples/plot_lm_loglik_examples.R |only lmvar-1.4.0/lmvar/R/fisher.R | 2 lmvar-1.4.0/lmvar/R/fitted.lmvar.R | 2 lmvar-1.4.0/lmvar/R/fwbw.R | 2 lmvar-1.4.0/lmvar/R/fwbw.lm.R | 54 ++-- lmvar-1.4.0/lmvar/R/fwbw.lmvar_no_fit.R |only lmvar-1.4.0/lmvar/R/lmvar.R | 161 +++++++++++--- lmvar-1.4.0/lmvar/R/lmvar_no_fit.R |only lmvar-1.4.0/lmvar/R/make_matrix_full_rank.sparseqr.R | 23 +- lmvar-1.4.0/lmvar/R/nobs.lmvar_no_fit.R |only lmvar-1.4.0/lmvar/R/plot_lm_loglik.R |only lmvar-1.4.0/lmvar/R/print.cvlmvar.R | 48 ++-- lmvar-1.4.0/lmvar/R/summary.lmvar.R | 2 lmvar-1.4.0/lmvar/R/vcov.lmvar.R | 2 lmvar-1.4.0/lmvar/README.md | 2 lmvar-1.4.0/lmvar/build/vignette.rds |binary lmvar-1.4.0/lmvar/inst/doc/Intro.Rmd | 36 ++- lmvar-1.4.0/lmvar/inst/doc/Intro.html | 34 ++ lmvar-1.4.0/lmvar/inst/doc/Math.ltx | 45 ++- lmvar-1.4.0/lmvar/inst/doc/Math.pdf |binary lmvar-1.4.0/lmvar/man/alias.lmvar_no_fit.Rd |only lmvar-1.4.0/lmvar/man/cv.lm.Rd | 4 lmvar-1.4.0/lmvar/man/cv.lmvar.Rd | 4 lmvar-1.4.0/lmvar/man/dfree.Rd | 6 lmvar-1.4.0/lmvar/man/fisher.Rd | 2 lmvar-1.4.0/lmvar/man/fitted.lmvar.Rd | 2 lmvar-1.4.0/lmvar/man/fwbw.Rd | 2 lmvar-1.4.0/lmvar/man/fwbw.lm.Rd | 19 - lmvar-1.4.0/lmvar/man/fwbw.lmvar_no_fit.Rd |only lmvar-1.4.0/lmvar/man/lmvar.Rd | 38 ++- lmvar-1.4.0/lmvar/man/lmvar_no_fit.Rd |only lmvar-1.4.0/lmvar/man/nobs.lmvar_no_fit.Rd |only lmvar-1.4.0/lmvar/man/plot_lm_loglik.Rd |only lmvar-1.4.0/lmvar/man/summary.lmvar.Rd | 2 lmvar-1.4.0/lmvar/man/vcov.lmvar.Rd | 2 lmvar-1.4.0/lmvar/tests/testthat/test_extractors.R | 3 lmvar-1.4.0/lmvar/tests/testthat/test_fwbw.R | 86 ++++++- lmvar-1.4.0/lmvar/tests/testthat/test_lmvar.R | 32 ++ lmvar-1.4.0/lmvar/tests/testthat/test_lmvar_no_fit.R |only lmvar-1.4.0/lmvar/vignettes/Intro.Rmd | 36 ++- lmvar-1.4.0/lmvar/vignettes/Math.ltx | 45 ++- 61 files changed, 623 insertions(+), 245 deletions(-)
Title: An Analytical Tool for Aquatic Respirometry
Description: Calculates metabolic rate of fish and other aquatic organisms measured using
an intermittent-flow respirometry approach. The tool is used to run a set of
graphical QC tests of raw respirometry data, correct it for background
respiration and chamber effect, filter and extract target values of absolute
and mass-specific metabolic rate. Experimental design should include background
respiration tests and measuring of one or two metabolic rate traits. The package
allows a user to import raw respirometry data obtained from 'AutoResp'
(see <http://www.loligosystems.com> for more information) or other logger
software.
Author: Sergey Morozov [aut, cre], R.J. Scott McCairns [aut], Federico Calboli [ctb]
Maintainer: Sergey Morozov <sergey.morozov@helsinki.fi>
Diff between FishResp versions 0.1.0 dated 2017-05-08 and 0.2.0 dated 2018-01-04
DESCRIPTION | 34 - MD5 | 132 ++- NAMESPACE | 8 R/AMR.R | 21 R/AMR.clean.R | 9 R/AMR.raw.R | 4 R/AMR.slope.R | 18 R/FishResp.R | 12 R/QC.activity.R | 42 - R/QC.meas.R | 57 - R/QC.slope.R | 36 - R/SMR.R | 21 R/SMR.clean.R | 9 R/SMR.raw.R | 4 R/SMR.slope.R | 18 R/calculate.MR.R | 38 - R/convert.rMR.R |only R/convert.respirometry.R |only R/correct.meas.R | 1032 ++++++++++++++++++++++++++++--- R/export.MR.R | 91 +- R/extract.slope.R | 240 ++++--- R/import.meas.R | 282 ++++---- R/import.test.R | 331 ++++----- R/info.R | 6 R/input.info.R | 47 - R/post.R | 4 R/pre.R | 4 R/results.R | 29 data/AMR.RData |binary data/AMR.clean.RData |binary data/AMR.raw.RData |binary data/AMR.slope.RData |binary data/SMR.RData |binary data/SMR.clean.RData |binary data/SMR.raw.RData |binary data/SMR.slope.RData |binary data/info.RData |binary data/post.RData |binary data/pre.RData |binary data/results.RData |binary inst/extdata/stickleback/AMR_raw.txt.xz |binary inst/extdata/stickleback/SMR_raw.txt.xz |binary inst/extdata/stickleback/post_raw.txt.xz |binary inst/extdata/stickleback/pre_raw.txt.xz |binary man/AMR.Rd | 11 man/AMR.clean.Rd | 7 man/AMR.raw.Rd | 3 man/AMR.slope.Rd | 9 man/FishResp.Rd | 12 man/QC.activity.Rd | 24 man/QC.meas.Rd | 34 - man/QC.slope.Rd | 28 man/SMR.Rd | 20 man/SMR.clean.Rd | 8 man/SMR.raw.Rd | 3 man/SMR.slope.Rd | 17 man/calculate.MR.Rd | 19 man/convert.rMR.Rd |only man/convert.respirometry.Rd |only man/correct.meas.Rd | 54 - man/export.MR.Rd | 29 man/extract.slope.Rd | 63 + man/import.meas.Rd | 45 - man/import.test.Rd | 64 - man/info.Rd | 5 man/input.info.Rd | 25 man/post.Rd | 3 man/pre.Rd | 3 man/results.Rd | 28 69 files changed, 1902 insertions(+), 1141 deletions(-)
Title: Tests for General Factorial Designs
Description: Implemented are the Wald-type statistic,
a permuted version thereof as well as the ANOVA-type statistic
for general factorial designs, even with non-normal error terms
and/or heteroscedastic variances, for crossed designs with an
arbitrary number of factors and nested designs with up to three factors.
Author: Sarah Friedrich, Frank Konietschke, Markus Pauly
Maintainer: Sarah Friedrich <sarah.friedrich@uni-ulm.de>
Diff between GFD versions 0.2.4 dated 2017-07-10 and 0.2.5 dated 2018-01-04
DESCRIPTION | 10 +++++----- MD5 | 21 +++++++++++---------- NAMESPACE | 1 + R/GFD-function.R | 29 ++++++++++++++++++++--------- R/GUI.R | 5 +++-- R/calculate_statistics.R | 14 ++++++++++---- build/vignette.rds |binary inst/NEWS.md |only inst/doc/IntroductionToGFD.Rmd | 3 ++- inst/doc/IntroductionToGFD.html | 35 ++++++++++++++++++----------------- man/GFD.Rd | 20 ++++++++++++++------ vignettes/IntroductionToGFD.Rmd | 3 ++- 12 files changed, 86 insertions(+), 55 deletions(-)
Title: Active Function Cross-Entropy Clustering
Description: Active function cross-entropy clustering partitions the n-dimensional data into the clusters by finding the parameters of the mixed generalized multivariate normal distribution, that optimally approximates the scattering of the data in the n-dimensional space, whose density function is of the form: p_1*N(mi_1,^sigma_1,sigma_1,f_1)+...+p_k*N(mi_k,^sigma_k,sigma_k,f_k). The above-mentioned generalization is performed by introducing so called "f-adapted Gaussian densities" (i.e. the ordinary Gaussian densities adapted by the "active function"). Additionally, the active function cross-entropy clustering performs the automatic reduction of the unnecessary clusters. For more information please refer to P. Spurek, J. Tabor, K.Byrski, "Active function Cross-Entropy Clustering" (2017) <doi:10.1016/j.eswa.2016.12.011>.
Author: Krzysztof Byrski [aut, cre], Przemyslaw Spurek [ctb]
Maintainer: Krzysztof Byrski <krzysiek.byrski@uj.edu.pl>
Diff between afCEC versions 1.0.0 dated 2017-12-15 and 1.0.1 dated 2018-01-04
DESCRIPTION | 8 - MD5 | 31 ++--- R/RcppExports.R | 8 - README.md |only data/airplane.rda |binary data/cat.rda |binary data/dog.rda |binary data/fire.rda |binary data/helicopter.rda |binary data/pathbased.rda |binary data/rabbit.rda |binary data/ship.rda |binary data/spiral.rda |binary data/trumpet.rda |binary man/afCEC-package.Rd | 4 src/RcppExports.cpp | 21 +++ src/afCEC.cpp | 289 +++++++++++++++++++++++++++++++++------------------ 17 files changed, 234 insertions(+), 127 deletions(-)
Title: Three-Way Data Analysis Through Densities
Description: The three-way data consists of a set of variables measured on several groups of individuals. To each group is associated an estimated probability density function. The package provides tools to create or manage such data and functional methods (principal component analysis, multidimensional scaling, cluster analysis, discriminant analysis...) for such probability densities.
Author: Rachid Boumaza[aut, cre], Pierre Santagostini [aut], Smail Yousfi [aut], Gilles Hunault [ctb], Julie Bourbeillon [ctb], Besnik Pumo [ctb], Sabine Demotes-Mainard [aut]
Maintainer: Rachid Boumaza <rachid.boumaza@agrocampus-ouest.fr>
Diff between dad versions 3.0.1 dated 2017-09-01 and 3.1.0 dated 2018-01-04
DESCRIPTION | 10 ++--- MD5 | 80 ++++++++++++++++++++++++++----------------- NAMESPACE | 20 ++++++++-- R/as.data.frame.foldert.R |only R/fhclustd.R | 25 ++++++------- R/fmdsd.R | 5 +- R/foldert.R |only R/fpcad.R | 4 +- R/fpcat.R |only R/interpret.fpcat.R |only R/is.foldert.R |only R/l2d.R | 12 +++++- R/matdistl2d.R | 33 +++++++++++------ R/matipl2d.R | 44 +++++++++++------------ R/plot.fmdsd.R | 2 - R/plot.fpcad.R | 2 - R/plot.fpcat.R |only R/plotframes.R | 2 - R/print.fpcad.R | 13 ++++-- R/print.fpcat.R |only R/summary.foldert.R |only data/castles.rda |only data/floribundity.rda |only man/as.data.frame.foldert.Rd |only man/as.folder.Rd | 2 - man/as.folderh.foldermtg.Rd | 9 +++- man/castles.Rd |only man/castles.dated.Rd | 2 - man/castles.nondated.Rd | 2 - man/dad-package.Rd | 9 +++- man/fhclustd.Rd | 38 +++++++++++++++++--- man/floribundity.Rd |only man/fmdsd.Rd | 7 ++- man/folder.Rd | 6 +-- man/foldert.Rd |only man/fpcad.Rd | 11 ++++- man/fpcat.Rd |only man/interpret.Rd | 11 +++-- man/interpret.fpcat.Rd |only man/is.foldert.Rd |only man/l2d.Rd | 2 - man/matdistl2d.Rd | 14 +++---- man/matipl2d.Rd | 14 +++---- man/plot.fpcat.Rd |only man/print.foldermtg.Rd | 4 +- man/print.fpcat.Rd |only man/summary.folder.Rd | 10 +---- man/summary.folderh.Rd | 19 ++++++++-- man/summary.foldermtg.Rd | 2 - man/summary.foldert.Rd |only man/varietyleaves.Rd | 2 - 51 files changed, 258 insertions(+), 158 deletions(-)
Title: Repeatability Estimation for Gaussian and Non-Gaussian Data
Description: Estimating repeatability (intra-class
correlation) from Gaussian, binary, proportion and count data.
Author: Martin Stoffel <martin.adam.stoffel@gmail.com>,
Shinichi Nakagawa <s.nakagawa@unsw.edu.au>,
Holger Schielzeth <holger.schielzeth@uni-jena.de>
Maintainer: Martin Stoffel <martin.adam.stoffel@gmail.com>
Diff between rptR versions 0.9.2 dated 2017-04-25 and 0.9.21 dated 2018-01-04
DESCRIPTION | 10 +++--- MD5 | 52 ++++++++++++++++---------------- NEWS.md | 9 +++++ R/rptGaussian.R | 2 - R/rptPoisson.R | 2 - README.md | 6 ++- build/vignette.rds |binary inst/CITATION | 6 +++ inst/doc/rptR.html | 68 +++++++++++++++++++++---------------------- man/BeetlesBody.Rd | 1 man/BeetlesFemale.Rd | 1 man/BeetlesMale.Rd | 1 man/LRT_nongaussian.Rd | 1 man/bootstrap_nongaussian.Rd | 1 man/group_vars.Rd | 1 man/permut_nongaussian.Rd | 1 man/plot.rpt.Rd | 9 ++--- man/print.rpt.Rd | 9 ++--- man/print.summary.rpt.Rd | 9 ++--- man/rpt.Rd | 11 +++--- man/rptBinary.Rd | 11 +++--- man/rptGaussian.Rd | 13 +++----- man/rptPoisson.Rd | 11 +++--- man/rptProportion.Rd | 11 +++--- man/rptR.Rd | 9 ++--- man/summary.rpt.Rd | 9 ++--- man/with_warnings.Rd | 1 27 files changed, 130 insertions(+), 135 deletions(-)
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.
Author: David Meyer [aut, cre],
Christian Buchta [aut]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between proxy versions 0.4-20 dated 2017-12-12 and 0.4-21 dated 2018-01-04
DESCRIPTION | 8 +++---- MD5 | 12 +++++----- inst/NEWS.Rd | 7 +++++- inst/doc/overview.pdf |binary src/apply.c | 57 +++++++++++++++++++++++++++++++++----------------- src/distance.c | 11 +++++++-- src/util.c | 6 +++-- 7 files changed, 67 insertions(+), 34 deletions(-)
Title: Model Response Styles in Partial Credit Models
Description: Implementation of PCMRS (Partial Credit Model with Response Styles) as proposed in by Tutz, Schauberger and Berger (2016) <https://epub.ub.uni-muenchen.de/29373/> . PCMRS is an extension of the regular partial credit model. PCMRS allows for an additional person parameter that characterizes the response style of the person. By taking the response style into account, the estimates of the item parameters are less biased than in partial credit models.
Author: Gunther Schauberger
Maintainer: Gunther Schauberger <gunther@stat.uni-muenchen.de>
Diff between PCMRS versions 0.0-2 dated 2017-11-15 and 0.1-1 dated 2018-01-04
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/cppEPCM.cpp | 44 +++++++++++++++++++++++++++----------------- 3 files changed, 33 insertions(+), 23 deletions(-)
Title: Variable Selection for Latent Class Analysis
Description: Variable selection for latent class analysis for model-based clustering of multivariate categorical data. The package implements a general framework for selecting the subset of variables with relevant clustering information and discard those that are redundant and/or not informative. The variable selection method is based on the approach of Fop et al. (2017) <doi:10.1214/17-AOAS1061> and Dean and Raftery (2010) <doi:10.1007/s10463-009-0258-9>. Different algorithms are available to perform the selection: stepwise, swap-stepwise and evolutionary stochastic search. Concomitant covariates used to predict the class membership probabilities can also be included in the latent class analysis model. The selection procedure can be run in parallel on multiple cores machines.
Author: Michael Fop [aut, cre],
Thomas Brendan Murphy [ctb]
Maintainer: Michael Fop <michael.fop@ucd.ie>
Diff between LCAvarsel versions 1.0 dated 2017-11-20 and 1.1 dated 2018-01-04
DESCRIPTION | 14 ++++---------- MD5 | 15 ++++++++------- R/LCAvarsel.R | 11 ++++++----- R/selBWD.R | 15 +++++++++------ R/selFWD.R | 15 +++++++++------ inst/CITATION | 6 +++--- inst/NEWS |only man/LCAvarsel.Rd | 11 ++++++++--- man/internal-functions.Rd | 4 ++-- 9 files changed, 49 insertions(+), 42 deletions(-)
Title: Indoor Positioning Fingerprinting Toolset
Description: Algorithms and utility functions for indoor positioning using fingerprinting techniques.
These functions are designed for manipulation of RSSI (Received Signal Strength Intensity) data
sets, estimation of positions,comparison of the performance of different models, and graphical
visualization of data. Machine learning algorithms and methods such as k-nearest neighbors or
probabilistic fingerprinting are implemented in this package to perform analysis
and estimations over RSSI data sets.
Author: Emilio Sansano [aut, cre],
Raúl Montoliu [ctb]
Maintainer: Emilio Sansano <esansano@uji.es>
Diff between ipft versions 0.7.1 dated 2017-08-29 and 0.7.2 dated 2018-01-04
ipft-0.7.1/ipft/man/ipfDist.Rd |only ipft-0.7.1/ipft/man/ipfEstbp.Rd |only ipft-0.7.1/ipft/man/ipfPlotEst.Rd |only ipft-0.7.1/ipft/man/ipfPlotLoc.Rd |only ipft-0.7.1/ipft/man/ipfProb.Rd |only ipft-0.7.1/ipft/man/ipfProx.Rd |only ipft-0.7.1/ipft/src/init.c |only ipft-0.7.2/ipft/DESCRIPTION | 6 - ipft-0.7.2/ipft/MD5 | 45 +++++----- ipft-0.7.2/ipft/NAMESPACE | 12 +- ipft-0.7.2/ipft/R/RcppExports.R | 10 +- ipft-0.7.2/ipft/R/data.R | 12 +- ipft-0.7.2/ipft/R/ipft.R | 94 +++++++++++----------- ipft-0.7.2/ipft/data/ipfpwap.rda |binary ipft-0.7.2/ipft/data/ipftest.rda |binary ipft-0.7.2/ipft/data/ipftrain.rda |binary ipft-0.7.2/ipft/man/ipfCluster.Rd | 6 + ipft-0.7.2/ipft/man/ipfDistance.Rd |only ipft-0.7.2/ipft/man/ipfEstimate.Rd | 2 ipft-0.7.2/ipft/man/ipfEstimateBeaconPositions.Rd |only ipft-0.7.2/ipft/man/ipfGroup.Rd | 2 ipft-0.7.2/ipft/man/ipfPlotEstimation.Rd |only ipft-0.7.2/ipft/man/ipfPlotLocation.Rd |only ipft-0.7.2/ipft/man/ipfProbabilistic.Rd |only ipft-0.7.2/ipft/man/ipfProximity.Rd |only ipft-0.7.2/ipft/man/ipfTransform.Rd | 6 - ipft-0.7.2/ipft/man/ipfpwap.Rd | 4 ipft-0.7.2/ipft/man/ipftest.Rd | 4 ipft-0.7.2/ipft/man/ipftrain.Rd | 4 ipft-0.7.2/ipft/src/RcppExports.cpp | 24 ++++- 30 files changed, 127 insertions(+), 104 deletions(-)
Title: Estimation and Hypothesis Testing for Threshold Regression
Description: Threshold regression models are also called two-phase regression, broken-stick regression, split-point regression, structural change models, and regression kink models. Methods for both continuous and discontinuous threshold models are included, but the support for the former is much greater. This package is described in Fong, Huang, Gilbert and Permar (2017) chngpt: threshold regression model estimation and inference, BMC Bioinformatics, in press, <DOI:10.1186/s12859-017-1863-x>.
Author: Youyi Fong
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between chngpt versions 2017.12-26 dated 2018-01-03 and 2018.1-3 dated 2018-01-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/Makevars.win | 4 ++-- src/chnpgt_boot.cc | 21 +++++++++++---------- 4 files changed, 19 insertions(+), 18 deletions(-)
Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <http://curl.haxx.se/libcurl/>
Provides functions to allow one to compose general HTTP requests
and provides convenient functions to fetch URIs, get & post
forms, etc. and process the results returned by the Web server.
This provides a great deal of control over the HTTP/FTP/...
connection and the form of the request while providing a
higher-level interface than is available just using R socket
connections. Additionally, the underlying implementation is
robust and extensive, supporting FTP/FTPS/TFTP (uploads and
downloads), SSL/HTTPS, telnet, dict, ldap, and also supports
cookies, redirects, authentication, etc.
Author: Duncan Temple Lang and the CRAN team
Maintainer: Duncan Temple Lang <duncan@r-project.org>
Diff between RCurl versions 1.95-4.9 dated 2017-12-27 and 1.95-4.10 dated 2018-01-04
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- src/curl.c | 32 ++++++++++++++++++-------------- src/json.c | 20 +++++++++++--------- src/myUTF8.c | 59 +++-------------------------------------------------------- 5 files changed, 39 insertions(+), 86 deletions(-)
Title: Next-Generation Sequencing (NGS) Data Analysis Toolkit
Description: Can be used to facilitate the analysis of NGS data, such as visualization, conversion of data format for WEB service input and other purpose.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>
Diff between ngstk versions 0.1.1.1 dated 2017-11-27 and 0.2.1 dated 2018-01-04
ngstk-0.1.1.1/ngstk/R/hander.R |only ngstk-0.1.1.1/ngstk/R/mhander.R |only ngstk-0.1.1.1/ngstk/inst/extdata/config/hander.toml |only ngstk-0.1.1.1/ngstk/inst/extdata/config/mhander.toml |only ngstk-0.1.1.1/ngstk/man/show_handers.Rd |only ngstk-0.1.1.1/ngstk/man/show_mhanders.Rd |only ngstk-0.1.1.1/ngstk/tests/testthat/test_e_hander.R |only ngstk-0.2.1/ngstk/ChangeLog | 18 ngstk-0.2.1/ngstk/DESCRIPTION | 6 ngstk-0.2.1/ngstk/MD5 | 69 +-- ngstk-0.2.1/ngstk/NAMESPACE | 5 ngstk-0.2.1/ngstk/R/cbioportal_trasefer.R | 90 ++-- ngstk-0.2.1/ngstk/R/filter.R | 63 +-- ngstk-0.2.1/ngstk/R/format.R | 12 ngstk-0.2.1/ngstk/R/handler.R |only ngstk-0.2.1/ngstk/R/mhandler.R |only ngstk-0.2.1/ngstk/R/proteinpaint_transefer.R | 94 ++-- ngstk-0.2.1/ngstk/R/split.R | 25 - ngstk-0.2.1/ngstk/R/utils.R | 165 +++++--- ngstk-0.2.1/ngstk/build/vignette.rds |binary ngstk-0.2.1/ngstk/inst/doc/ngstk.R | 20 ngstk-0.2.1/ngstk/inst/doc/ngstk.Rmd | 24 - ngstk-0.2.1/ngstk/inst/doc/ngstk.html | 390 ++++++++++++++++--- ngstk-0.2.1/ngstk/inst/extdata/config/handler.toml |only ngstk-0.2.1/ngstk/inst/extdata/config/mhandler.toml |only ngstk-0.2.1/ngstk/inst/extdata/config/theme.toml | 31 + ngstk-0.2.1/ngstk/man/batch_file.Rd |only ngstk-0.2.1/ngstk/man/format_filenames.Rd | 6 ngstk-0.2.1/ngstk/man/fusions2oncoprinter.Rd | 26 - ngstk-0.2.1/ngstk/man/fusions2pp.Rd | 28 - ngstk-0.2.1/ngstk/man/fusions2pp_meta.Rd | 28 - ngstk-0.2.1/ngstk/man/fusions_filter.Rd | 30 - ngstk-0.2.1/ngstk/man/muts2mutation_mapper.Rd | 26 - ngstk-0.2.1/ngstk/man/muts2oncoprinter.Rd | 26 - ngstk-0.2.1/ngstk/man/muts2pp.Rd | 26 - ngstk-0.2.1/ngstk/man/set_colors.Rd | 6 ngstk-0.2.1/ngstk/man/show_handlers.Rd |only ngstk-0.2.1/ngstk/man/show_mhandlers.Rd |only ngstk-0.2.1/ngstk/tests/testthat/test_a_utils.R | 17 ngstk-0.2.1/ngstk/tests/testthat/test_d_filter.R | 20 ngstk-0.2.1/ngstk/tests/testthat/test_e_handler.R |only ngstk-0.2.1/ngstk/tests/testthat/test_l_format.R | 12 ngstk-0.2.1/ngstk/vignettes/ngstk.Rmd | 24 - 43 files changed, 878 insertions(+), 409 deletions(-)
Title: Lightweight Biology Software Installer
Description: Can be used to install and download massive bioinformatics analysis softwares and databases, such as NGS reads mapping tools with its required databases.
Author: Jianfeng Li [aut, cre]
Maintainer: Jianfeng Li <lee_jianfeng@sjtu.edu.cn>
Diff between BioInstaller versions 0.3.1 dated 2017-11-26 and 0.3.2 dated 2018-01-04
ChangeLog | 73 + DESCRIPTION | 6 MD5 | 36 R/crawl.R | 13 R/install.R | 20 R/install_utils.R | 4 R/utils_function.R | 12 README.md | 2 build/vignette.rds |binary inst/doc/BioInstaller.html | 952 ++++++++++++++-------- inst/doc/write_configuration_file.html | 8 inst/extdata/config/db/db_annovar.toml | 201 ++++ inst/extdata/config/db/db_main.toml | 168 +++ inst/extdata/config/db/db_meta.toml | 130 ++- inst/extdata/config/github/github.toml | 271 ------ inst/extdata/config/nongithub/nongithub.toml | 394 --------- inst/extdata/config/nongithub/nongithub_meta.toml | 12 man/craw.all.versions.Rd | 12 man/install.bioinfo.Rd | 4 19 files changed, 1312 insertions(+), 1006 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-15 0.9
2014-01-14 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-07-11 0.2.1
2017-05-29 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-07-19 0.71.0
2016-06-27 0.70
2015-12-08 0.65
2015-06-30 0.55
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-18 1.2.0
2015-04-08 1.1.1
2015-02-28 1.1.0
2015-01-06 1.0.4
2014-12-16 1.0