Title: Groovy Language Integration
Description: Integrates the Groovy scripting language with the R Project for Statistical Computing.
Author: Thomas P. Fuller <thomas.fuller@coherentlogic.com>
Maintainer: Thomas P. Fuller <thomas.fuller@coherentlogic.com>
Diff between rGroovy versions 1.0 dated 2015-10-31 and 1.2 dated 2018-01-16
rGroovy-1.0/rGroovy/tests/test_all.R |only rGroovy-1.2/rGroovy/DESCRIPTION | 18 rGroovy-1.2/rGroovy/INDEX | 8 rGroovy-1.2/rGroovy/MD5 | 25 - rGroovy-1.2/rGroovy/NAMESPACE | 14 rGroovy-1.2/rGroovy/NEWS | 18 rGroovy-1.2/rGroovy/R/rGroovy.R | 463 +++++++++++----------- rGroovy-1.2/rGroovy/man/About.Rd | 23 - rGroovy-1.2/rGroovy/man/CheckJRERuntimeVersion.Rd |only rGroovy-1.2/rGroovy/man/Evaluate.Rd | 56 +- rGroovy-1.2/rGroovy/man/Execute.Rd | 72 +-- rGroovy-1.2/rGroovy/man/Initialize.Rd | 44 +- rGroovy-1.2/rGroovy/man/rGroovy.Rd | 100 ++-- rGroovy-1.2/rGroovy/tests/testthat.R |only rGroovy-1.2/rGroovy/tests/testthat/test_rGroovy.R | 225 +++++++--- 15 files changed, 594 insertions(+), 472 deletions(-)
Title: The 'jamovi' Analyses
Description: A suite of common statistical methods such as descriptives,
t-tests, ANOVAs, correlation matrices, proportion tests, contingency tables,
and factor analysis. This package is also useable from the 'jamovi'
statistical spreadsheet (see <https://www.jamovi.org> for more information).
Author: Ravi Selker, Jonathon Love, Damian Dropmann
Maintainer: Jonathon Love <jon@thon.cc>
Diff between jmv versions 0.8.1.11 dated 2017-12-07 and 0.8.1.14 dated 2018-01-16
DESCRIPTION | 12 ++++++------ MD5 | 15 +++++++++------ NAMESPACE | 1 + R/ancova.b.R | 2 +- R/anovarm.b.R | 6 +++--- R/cfa.b.R | 19 ++++++++++--------- R/descriptives.b.R | 2 +- R/loglinear.b.R |only R/loglinear.h.R |only man/logLinear.Rd |only 10 files changed, 31 insertions(+), 26 deletions(-)
Title: Functions for Optimal Matching
Description: Distance based bipartite matching using the RELAX-IV minimum cost flow solver,
oriented to matching of treatment and control groups in observational
studies. Routines are provided to generate distances from generalised linear models (propensity
score matching), formulas giving variables on which to limit matched distances, stratified or
exact matching directives, or calipers, alone or in combination.
Author: Ben B. Hansen <ben.hansen@umich.edu>, Mark Fredrickson
<mark.m.fredrickson@gmail.com>, Josh Buckner, Josh Errickson, and Peter
Solenberger, with embedded Fortran code due to Dimitri P. Bertsekas
<dimitrib@mit.edu> and Paul Tseng
Maintainer: Mark M. Fredrickson <mark.m.fredrickson@gmail.com>
Diff between optmatch versions 0.9-7 dated 2016-12-29 and 0.9-8 dated 2018-01-16
optmatch-0.9-7/optmatch/tests/mahal-dist.Rout.save |only optmatch-0.9-8/optmatch/DESCRIPTION | 8 optmatch-0.9-8/optmatch/MD5 | 185 ++++--- optmatch-0.9-8/optmatch/NAMESPACE | 12 optmatch-0.9-8/optmatch/NEWS | 26 + optmatch-0.9-8/optmatch/R/InfinitySparseMatrix.R | 27 - optmatch-0.9-8/optmatch/R/Optmatch-package.R | 2 optmatch-0.9-8/optmatch/R/Optmatch.R | 8 optmatch-0.9-8/optmatch/R/RcppExports.R | 8 optmatch-0.9-8/optmatch/R/boxplotMethods.R | 35 + optmatch-0.9-8/optmatch/R/exactMatch.R | 13 optmatch-0.9-8/optmatch/R/feasible.R | 46 + optmatch-0.9-8/optmatch/R/fmatch.R | 6 optmatch-0.9-8/optmatch/R/fullmatch.R | 34 - optmatch-0.9-8/optmatch/R/makedist.R | 13 optmatch-0.9-8/optmatch/R/match_on.R | 48 +- optmatch-0.9-8/optmatch/R/matchfailed.R | 1 optmatch-0.9-8/optmatch/R/pairmatch.R | 56 +- optmatch-0.9-8/optmatch/R/subDivStrat.R | 22 optmatch-0.9-8/optmatch/R/utilities.R | 47 +- optmatch-0.9-8/optmatch/R/zzzDistanceSpecification.R | 16 optmatch-0.9-8/optmatch/build/vignette.rds |binary optmatch-0.9-8/optmatch/inst/doc/fullmatch-vignette.pdf |binary optmatch-0.9-8/optmatch/inst/doc/matching-from-foreign-software.pdf |binary optmatch-0.9-8/optmatch/inst/examples/subdim.R |only optmatch-0.9-8/optmatch/man/InfinitySparseMatrix-class.Rd | 7 optmatch-0.9-8/optmatch/man/antiExactMatch.Rd | 7 optmatch-0.9-8/optmatch/man/as.InfinitySparseMatrix.Rd | 1 optmatch-0.9-8/optmatch/man/caliper-methods.Rd | 7 optmatch-0.9-8/optmatch/man/caliperSize.Rd | 2 optmatch-0.9-8/optmatch/man/caliperUpperBound.Rd | 2 optmatch-0.9-8/optmatch/man/cbindrbind.Rd | 13 optmatch-0.9-8/optmatch/man/compare_optmatch.Rd | 1 optmatch-0.9-8/optmatch/man/dimnames-InfinitySparseMatrix.Rd | 3 optmatch-0.9-8/optmatch/man/distUnion.Rd | 1 optmatch-0.9-8/optmatch/man/dist_digest.Rd | 2 optmatch-0.9-8/optmatch/man/effectiveSampleSize.Rd | 3 optmatch-0.9-8/optmatch/man/exactMatch.Rd | 16 optmatch-0.9-8/optmatch/man/fill.NAs.Rd | 7 optmatch-0.9-8/optmatch/man/findSubproblems.Rd |only optmatch-0.9-8/optmatch/man/fmla2treatedblocking.Rd | 2 optmatch-0.9-8/optmatch/man/fullmatch.Rd | 25 - optmatch-0.9-8/optmatch/man/getMaxProblemSize.Rd | 3 optmatch-0.9-8/optmatch/man/ismBinaryOps.Rd | 3 optmatch-0.9-8/optmatch/man/makeOptmatch.Rd | 2 optmatch-0.9-8/optmatch/man/match_on-methods.Rd | 20 optmatch-0.9-8/optmatch/man/matched.Rd | 9 optmatch-0.9-8/optmatch/man/matched.distances.Rd | 1 optmatch-0.9-8/optmatch/man/maxCaliper.Rd | 1 optmatch-0.9-8/optmatch/man/mdist.Rd | 13 optmatch-0.9-8/optmatch/man/minExactMatch.Rd | 1 optmatch-0.9-8/optmatch/man/minmaxctlcap.Rd | 7 optmatch-0.9-8/optmatch/man/missing_x_msg.Rd | 2 optmatch-0.9-8/optmatch/man/nuclearplants.Rd | 1 optmatch-0.9-8/optmatch/man/num_eligible_matches-methods.Rd | 7 optmatch-0.9-8/optmatch/man/optmatch-defunct.Rd | 3 optmatch-0.9-8/optmatch/man/optmatch.Rd | 1 optmatch-0.9-8/optmatch/man/optmatch_restrictions.Rd | 1 optmatch-0.9-8/optmatch/man/optmatch_same_distance.Rd | 1 optmatch-0.9-8/optmatch/man/pairmatch.Rd | 15 optmatch-0.9-8/optmatch/man/plantdist.Rd | 1 optmatch-0.9-8/optmatch/man/predict.CBPS.Rd | 1 optmatch-0.9-8/optmatch/man/print.optmatch.Rd | 1 optmatch-0.9-8/optmatch/man/relaxinfo.Rd | 1 optmatch-0.9-8/optmatch/man/scoreCaliper.Rd | 1 optmatch-0.9-8/optmatch/man/scores.Rd | 7 optmatch-0.9-8/optmatch/man/setFeasibilityConstants.Rd | 2 optmatch-0.9-8/optmatch/man/setMaxProblemSize.Rd |only optmatch-0.9-8/optmatch/man/setTryRecovery.Rd | 2 optmatch-0.9-8/optmatch/man/show-BlockedInfinitySparseMatrix-method.Rd | 1 optmatch-0.9-8/optmatch/man/show-InfinitySparseMatrix-method.Rd | 1 optmatch-0.9-8/optmatch/man/sort.ism.Rd | 3 optmatch-0.9-8/optmatch/man/stratumStructure.Rd | 11 optmatch-0.9-8/optmatch/man/subdim-methods.Rd | 18 optmatch-0.9-8/optmatch/man/subproblemSuccess.Rd | 2 optmatch-0.9-8/optmatch/man/subset.InfinitySparseMatrix.Rd | 1 optmatch-0.9-8/optmatch/man/summary.ism.Rd | 5 optmatch-0.9-8/optmatch/man/update.optmatch.Rd | 1 optmatch-0.9-8/optmatch/man/validDistanceSpecification.Rd | 2 optmatch-0.9-8/optmatch/src/Makevars | 2 optmatch-0.9-8/optmatch/src/RcppExports.cpp | 8 optmatch-0.9-8/optmatch/src/optmatch_init.c |only optmatch-0.9-8/optmatch/tests/mahal-dist.R | 12 optmatch-0.9-8/optmatch/tests/testthat/test.InfinitySparseMatrix.R | 22 optmatch-0.9-8/optmatch/tests/testthat/test.RItools.R | 13 optmatch-0.9-8/optmatch/tests/testthat/test.exactMatch.R | 27 + optmatch-0.9-8/optmatch/tests/testthat/test.fill.NAs.R | 3 optmatch-0.9-8/optmatch/tests/testthat/test.fullmatch.R | 232 +++++++++- optmatch-0.9-8/optmatch/tests/testthat/test.fullmatch.infeasible.recovery.R | 2 optmatch-0.9-8/optmatch/tests/testthat/test.makedist.R | 17 optmatch-0.9-8/optmatch/tests/testthat/test.match_on.R | 142 +++++- optmatch-0.9-8/optmatch/tests/testthat/test.maxControlsCap.old.R | 18 optmatch-0.9-8/optmatch/tests/testthat/test.pairmatch.R | 136 +++++ optmatch-0.9-8/optmatch/tests/testthat/test.pairmatch.old.R | 100 ++-- optmatch-0.9-8/optmatch/tests/testthat/test.rank.mahal.R | 72 ++- optmatch-0.9-8/optmatch/tests/testthat/test.utilities.R | 31 + 96 files changed, 1253 insertions(+), 448 deletions(-)
Title: Model Based Diagnostics for Multivariate Cluster Analysis
Description: Assessment and diagnostics for comparing competing
clustering solutions, using predictive models. The main intended
use is for comparing clustering/classification solutions of
ecological data (e.g. presence/absence, counts, ordinal scores) to
1) find an optimal partitioning solution, 2) identify
characteristic species and 3) refine a classification by merging
clusters that increase predictive performance. However, in a more
general sense, this package can do the above for any set of
clustering solutions for i observations of j variables.
Author: Mitchell Lyons [aut, cre]
Maintainer: Mitchell Lyons <mitchell.lyons@gmail.com>
Diff between optimus versions 0.1.0 dated 2017-03-24 and 0.2.0 dated 2018-01-16
DESCRIPTION | 8 - MD5 | 30 +++--- NEWS.md | 9 + R/find_optimal.R | 10 +- R/get_characteristic.R | 19 ++- R/merge_clusters.R | 10 +- R/plot.aicsums.R | 120 ++++++++++++------------ README.md | 39 ++++--- build/vignette.rds |binary inst/doc/optimus-workflow.html | 29 +++-- man/find_optimal.Rd | 10 +- man/get_characteristic.Rd | 12 +- man/merge_clusters.Rd | 10 +- man/plot.aicsums.Rd | 2 man/points.aicsums.Rd | 2 tests/testthat/test-find_optimal.R | 181 +++++++++++++++++++++++-------------- 16 files changed, 279 insertions(+), 212 deletions(-)
Title: Text Processing for Small or Big Data Files
Description: Processes big text data files in batches efficiently. For this purpose, it offers functions for splitting, parsing, tokenizing and creating a vocabulary. Moreover, it includes functions for building either a document-term matrix or a term-document matrix and extracting information from those (term-associations, most frequent terms). Lastly, it embodies functions for calculating token statistics (collocations, look-up tables, string dissimilarities) and functions to work with sparse matrices. The source code is based on 'C++11' and exported in R through the 'Rcpp', 'RcppArmadillo' and 'BH' packages.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between textTinyR versions 1.0.8 dated 2017-10-31 and 1.0.9 dated 2018-01-16
textTinyR-1.0.8/textTinyR/tests/testthat/test-term_matrix_triplet_data.R |only textTinyR-1.0.9/textTinyR/DESCRIPTION | 8 - textTinyR-1.0.9/textTinyR/MD5 | 26 ++-- textTinyR-1.0.9/textTinyR/NEWS.md | 6 - textTinyR-1.0.9/textTinyR/R/RcppExports.R | 8 + textTinyR-1.0.9/textTinyR/R/utils.R | 59 +++++++++- textTinyR-1.0.9/textTinyR/build/vignette.rds |binary textTinyR-1.0.9/textTinyR/configure | 14 ++ textTinyR-1.0.9/textTinyR/inst/doc/functionality_of_textTinyR_package.html | 4 textTinyR-1.0.9/textTinyR/man/sparse_term_matrix.Rd | 14 ++ textTinyR-1.0.9/textTinyR/src/RcppExports.cpp | 23 +++ textTinyR-1.0.9/textTinyR/src/export_all_funcs.cpp | 38 ++++++ textTinyR-1.0.9/textTinyR/src/init.c | 4 textTinyR-1.0.9/textTinyR/src/token_stats.h | 8 + textTinyR-1.0.9/textTinyR/tests/testthat/test-term_matrix_triplet_data_global_term_weights.R |only 15 files changed, 187 insertions(+), 25 deletions(-)
Title: Discriminant Analysis with Additional Information
Description: In applications it is usual that some additional information is available. This package dawai (an acronym for Discriminant Analysis With Additional Information) performs linear and quadratic discriminant analysis with additional information expressed as inequality restrictions among the populations means. It also computes several estimations of the true error rate.
Author: David Conde, Miguel A. Fernandez, Bonifacio Salvador
Maintainer: David Conde <dconde@eio.uva.es>
Diff between dawai versions 1.2.2 dated 2017-10-12 and 1.2.3 dated 2018-01-16
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/checks.R | 13 +++++++++---- R/rlda.R | 2 +- R/rqda.R | 2 +- inst/doc/dawai.pdf |binary man/dawai-package.Rd | 4 ++-- 7 files changed, 23 insertions(+), 18 deletions(-)
Title: Spatial Modeling on Stream Networks
Description: Spatial statistical modeling and prediction for data on stream networks, including models based on in-stream distance. Models are created using moving average constructions. Spatial linear models, including explanatory variables, can be fit with (restricted) maximum likelihood. Mapping and other graphical functions are included.
Author: Jay Ver Hoef and Erin Peterson
Maintainer: Jay Ver Hoef <ver.hoef@SpatialStreamNetworks.com>
Diff between SSN versions 1.1.10 dated 2017-04-12 and 1.1.11 dated 2018-01-16
SSN-1.1.10/SSN/inst/vignRnw |only SSN-1.1.11/SSN/DESCRIPTION | 10 ++--- SSN-1.1.11/SSN/MD5 | 34 +++++++++---------- SSN-1.1.11/SSN/R/additive.function.R | 57 ++++++++++++++++----------------- SSN-1.1.11/SSN/R/amongPredsDistMat.R | 2 - SSN-1.1.11/SSN/R/copyLSN2temp.R | 10 ++--- SSN-1.1.11/SSN/R/importPredpts.R | 5 ++ SSN-1.1.11/SSN/R/importSSN.R | 12 ++++++ SSN-1.1.11/SSN/R/varcomp.glmssn.R | 2 - SSN-1.1.11/SSN/data/mf04.rda |binary SSN-1.1.11/SSN/data/mf04p.rda |binary SSN-1.1.11/SSN/data/modelFits.rda |binary SSN-1.1.11/SSN/inst/doc/STARS.pdf |binary SSN-1.1.11/SSN/man/copyLSN2temp.Rd | 6 +-- SSN-1.1.11/SSN/man/createSSN.Rd | 36 ++++++++++---------- SSN-1.1.11/SSN/man/splitPredictions.Rd | 14 ++++---- SSN-1.1.11/SSN/man/subsetSSN.Rd | 6 ++- SSN-1.1.11/SSN/vignettes/STARS.Rnw | 18 +++++++--- 18 files changed, 115 insertions(+), 97 deletions(-)
Title: Calculate Text Polarity Sentiment
Description: Calculate text polarity sentiment at the sentence level and optionally aggregate
by rows or grouping variable(s).
Author: Tyler Rinker [aut, cre]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between sentimentr versions 2.0.1 dated 2017-11-27 and 2.2.3 dated 2018-01-16
sentimentr-2.0.1/sentimentr/data/kotzias_reviews.rda |only sentimentr-2.0.1/sentimentr/inst/sentiment_testing/results_list.rds |only sentimentr-2.0.1/sentimentr/man/kotzias_reviews.Rd |only sentimentr-2.2.3/sentimentr/DESCRIPTION | 14 sentimentr-2.2.3/sentimentr/MD5 | 104 ++- sentimentr-2.2.3/sentimentr/NAMESPACE | 11 sentimentr-2.2.3/sentimentr/NEWS | 53 + sentimentr-2.2.3/sentimentr/R/as_key.R | 4 sentimentr-2.2.3/sentimentr/R/combine_data.R |only sentimentr-2.2.3/sentimentr/R/extract_sentiment_terms.R | 10 sentimentr-2.2.3/sentimentr/R/get_sentences.R | 6 sentimentr-2.2.3/sentimentr/R/highlight.R | 2 sentimentr-2.2.3/sentimentr/R/sentiment.R | 167 ++++- sentimentr-2.2.3/sentimentr/R/sentiment_attributes.R | 2 sentimentr-2.2.3/sentimentr/R/sentiment_by.R | 11 sentimentr-2.2.3/sentimentr/R/sentimentr-package.R | 292 +++++++++- sentimentr-2.2.3/sentimentr/R/textclean_reexports.R | 18 sentimentr-2.2.3/sentimentr/R/utils.R | 21 sentimentr-2.2.3/sentimentr/R/validate_sentiment.R | 12 sentimentr-2.2.3/sentimentr/README.md | 228 ++++--- sentimentr-2.2.3/sentimentr/data/cannon_reviews.rda |binary sentimentr-2.2.3/sentimentr/data/course_evaluations.rda |only sentimentr-2.2.3/sentimentr/data/crowdflower_deflategate.rda |only sentimentr-2.2.3/sentimentr/data/crowdflower_products.rda |only sentimentr-2.2.3/sentimentr/data/crowdflower_self_driving_cars.rda |only sentimentr-2.2.3/sentimentr/data/crowdflower_weather.rda |only sentimentr-2.2.3/sentimentr/data/datalist |only sentimentr-2.2.3/sentimentr/data/hotel_reviews.rda |only sentimentr-2.2.3/sentimentr/data/kaggle_movie_reviews.rda |only sentimentr-2.2.3/sentimentr/data/kotzias_reviews_amazon_cells.rda |only sentimentr-2.2.3/sentimentr/data/kotzias_reviews_imdb.rda |only sentimentr-2.2.3/sentimentr/data/kotzias_reviews_yelp.rda |only sentimentr-2.2.3/sentimentr/data/nyt_articles.rda |only sentimentr-2.2.3/sentimentr/data/presidential_debates_2012.rda |binary sentimentr-2.2.3/sentimentr/data/sam_i_am.rda |binary sentimentr-2.2.3/sentimentr/inst/CITATION | 9 sentimentr-2.2.3/sentimentr/inst/sentiment_testing/raw_results.R | 18 sentimentr-2.2.3/sentimentr/inst/sentiment_testing/sentiment_testing.R | 9 sentimentr-2.2.3/sentimentr/inst/sfp/sfp | 11 sentimentr-2.2.3/sentimentr/man/as_key.Rd | 3 sentimentr-2.2.3/sentimentr/man/cannon_reviews.Rd | 5 sentimentr-2.2.3/sentimentr/man/combine_data.Rd |only sentimentr-2.2.3/sentimentr/man/course_evaluations.Rd |only sentimentr-2.2.3/sentimentr/man/crowdflower_deflategate.Rd |only sentimentr-2.2.3/sentimentr/man/crowdflower_products.Rd |only sentimentr-2.2.3/sentimentr/man/crowdflower_self_driving_cars.Rd |only sentimentr-2.2.3/sentimentr/man/crowdflower_weather.Rd |only sentimentr-2.2.3/sentimentr/man/extract_sentiment_terms.Rd | 4 sentimentr-2.2.3/sentimentr/man/get_sentences.Rd | 6 sentimentr-2.2.3/sentimentr/man/highlight.Rd | 2 sentimentr-2.2.3/sentimentr/man/hotel_reviews.Rd |only sentimentr-2.2.3/sentimentr/man/kaggle_movie_reviews.Rd |only sentimentr-2.2.3/sentimentr/man/kotzias_reviews_amazon_cells.Rd |only sentimentr-2.2.3/sentimentr/man/kotzias_reviews_imdb.Rd |only sentimentr-2.2.3/sentimentr/man/kotzias_reviews_yelp.Rd |only sentimentr-2.2.3/sentimentr/man/nyt_articles.Rd |only sentimentr-2.2.3/sentimentr/man/reexports.Rd | 10 sentimentr-2.2.3/sentimentr/man/sentiment.Rd | 90 ++- sentimentr-2.2.3/sentimentr/man/sentiment_attributes.Rd | 3 sentimentr-2.2.3/sentimentr/man/sentiment_by.Rd | 9 sentimentr-2.2.3/sentimentr/man/validate_sentiment.Rd | 12 sentimentr-2.2.3/sentimentr/tests/testthat/test-extract_sentiment_terms.R | 2 sentimentr-2.2.3/sentimentr/tools/figure/comparisons_between_sentiment_detectors2.pdf |binary sentimentr-2.2.3/sentimentr/tools/figure/comparisons_between_sentiment_detectors2.png |binary sentimentr-2.2.3/sentimentr/tools/figure/comparisons_between_sentiment_detectors_b.png |binary sentimentr-2.2.3/sentimentr/tools/figure/unnamed-chunk-11-1.png |binary sentimentr-2.2.3/sentimentr/tools/figure/unnamed-chunk-12-1.png |binary 67 files changed, 850 insertions(+), 298 deletions(-)
Title: An Image Processing Toolkit
Description: Incorporates functions for image preprocessing, filtering and image recognition. The package takes advantage of 'RcppArmadillo' to speed up computationally intensive functions. The histogram of oriented gradients descriptor is a modification of the 'findHOGFeatures' function of the 'SimpleCV' computer vision platform and the average_hash(), dhash() and phash() functions are based on the 'ImageHash' python library.
Author: Lampros Mouselimis [aut, cre],
Sight Machine [cph] (findHOGFeatures function of the SimpleCV computer
vision platform),
Johannes Buchner [cph] (average_hash, dhash and phash functions of the
ImageHash python library)
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between OpenImageR versions 1.0.7 dated 2017-10-30 and 1.0.8 dated 2018-01-16
DESCRIPTION | 8 ++-- MD5 | 14 +++---- NEWS.md | 5 ++ build/vignette.rds |binary inst/doc/The_OpenImageR_package.html | 66 +++++++++++++++++------------------ src/Makevars | 2 - src/Makevars.win | 2 - src/image_hashing.cpp | 8 +++- 8 files changed, 58 insertions(+), 47 deletions(-)
Title: Linear Parametric Models Applied to Hydrological Series
Description: Apply Univariate Long Memory Models,
Apply Multivariate Short Memory Models To Hydrological Dataset,
Estimate Intensity Duration Frequency curve to rainfall series.
Author: Corrado Tallerini [aut, cre],
Salvatore Grimaldi [aut]
Maintainer: Corrado Tallerini <corrado.tallerini@vodafone.it>
Diff between LPM versions 2.6 dated 2015-11-05 and 2.7 dated 2018-01-16
LPM-2.6/LPM/INDEX |only LPM-2.6/LPM/build |only LPM-2.6/LPM/data/Hourly.rainfall.series.rda |only LPM-2.6/LPM/man/Hourly.rainfall.series.Rd |only LPM-2.6/LPM/man/LPM-package.Rd |only LPM-2.7/LPM/DESCRIPTION | 17 +- LPM-2.7/LPM/MD5 | 23 +-- LPM-2.7/LPM/NAMESPACE | 2 LPM-2.7/LPM/R/IDFcurve.R | 188 +++++++++------------------- LPM-2.7/LPM/R/IDFcurve2.R |only LPM-2.7/LPM/R/LPM-internal.R | 170 ++++++++++++++++++++++++- LPM-2.7/LPM/data/hourly.rainfall.series.rda |only LPM-2.7/LPM/data/milano.rda |only LPM-2.7/LPM/man/IDFcurve.Rd | 21 +-- LPM-2.7/LPM/man/IDFcurve2.Rd |only LPM-2.7/LPM/man/hourly.rainfall.series.Rd |only LPM-2.7/LPM/man/milano.Rd |only LPM-2.7/LPM/man/restrict.Rd | 6 18 files changed, 266 insertions(+), 161 deletions(-)
Title: Kernel Smoothing
Description: Kernel smoothers for univariate and multivariate data, including density functions, density derivatives, cumulative distributions, modal clustering, classification (discriminant analysis), significant modal regions and two-sample hypothesis testing.
Author: Tarn Duong <tarn.duong@gmail.com>
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between ks versions 1.10.7 dated 2017-07-02 and 1.11.0 dated 2018-01-16
ks-1.10.7/ks/man/kde.1d.Rd |only ks-1.11.0/ks/CHANGELOG | 24 + ks-1.11.0/ks/DESCRIPTION | 17 - ks-1.11.0/ks/MD5 | 115 +++++--- ks-1.11.0/ks/NAMESPACE | 32 ++ ks-1.11.0/ks/R/binning.R | 12 ks-1.11.0/ks/R/deconv-kde.R |only ks-1.11.0/ks/R/hist.R |only ks-1.11.0/ks/R/integrate-kde.R | 23 + ks-1.11.0/ks/R/kcde.R | 72 +---- ks-1.11.0/ks/R/kcopula.R | 475 +------------------------------------ ks-1.11.0/ks/R/kda.R | 130 ++++------ ks-1.11.0/ks/R/kdde.R | 172 ++++++++----- ks-1.11.0/ks/R/kde-boundary.R |only ks-1.11.0/ks/R/kde-test.R | 44 ++- ks-1.11.0/ks/R/kde.R | 370 ++++++++++++++++++---------- ks-1.11.0/ks/R/kdr.R |only ks-1.11.0/ks/R/kfe.R | 11 ks-1.11.0/ks/R/kfs.R | 45 +-- ks-1.11.0/ks/R/kms.R | 49 +++ ks-1.11.0/ks/R/kr.R |only ks-1.11.0/ks/R/ksupp.R |only ks-1.11.0/ks/R/normal.R | 113 +++++++- ks-1.11.0/ks/R/prelim.R | 62 ++++ ks-1.11.0/ks/R/selector.R | 154 ++++++++--- ks-1.11.0/ks/R/vkde.R |only ks-1.11.0/ks/build/vignette.rds |binary ks-1.11.0/ks/data/grevillea.RData |only ks-1.11.0/ks/data/worldbank.RData |only ks-1.11.0/ks/inst/doc/kde.pdf |binary ks-1.11.0/ks/man/Hbcv.Rd | 2 ks-1.11.0/ks/man/Hlscv.Rd | 12 ks-1.11.0/ks/man/Hnm.Rd |only ks-1.11.0/ks/man/Hns.Rd | 8 ks-1.11.0/ks/man/Hpi.Rd | 12 ks-1.11.0/ks/man/Hscv.Rd | 19 - ks-1.11.0/ks/man/binning.Rd | 5 ks-1.11.0/ks/man/contour.Rd | 4 ks-1.11.0/ks/man/grevillea.Rd |only ks-1.11.0/ks/man/histde.Rd |only ks-1.11.0/ks/man/ise.mixt.Rd | 4 ks-1.11.0/ks/man/kcde.Rd | 12 ks-1.11.0/ks/man/kcopula.Rd | 6 ks-1.11.0/ks/man/kda.Rd | 11 ks-1.11.0/ks/man/kdde.Rd | 27 +- ks-1.11.0/ks/man/kde.Rd | 44 ++- ks-1.11.0/ks/man/kde.boundary.Rd |only ks-1.11.0/ks/man/kde.local.test.Rd | 10 ks-1.11.0/ks/man/kde.test.Rd | 4 ks-1.11.0/ks/man/kde.truncate.Rd |only ks-1.11.0/ks/man/kfe.Rd | 8 ks-1.11.0/ks/man/kfs.Rd | 6 ks-1.11.0/ks/man/kms.Rd | 11 ks-1.11.0/ks/man/kroc.Rd | 8 ks-1.11.0/ks/man/ks-internal.Rd | 11 ks-1.11.0/ks/man/ks-package.Rd | 54 ++++ ks-1.11.0/ks/man/ksupp.Rd |only ks-1.11.0/ks/man/mixt.Rd | 19 + ks-1.11.0/ks/man/plot.histde.Rd |only ks-1.11.0/ks/man/plot.kda.Rd | 8 ks-1.11.0/ks/man/plot.kdde.Rd | 17 + ks-1.11.0/ks/man/plot.kde.Rd | 2 ks-1.11.0/ks/man/plot.kde.part.Rd |only ks-1.11.0/ks/man/plot.kfs.Rd | 6 ks-1.11.0/ks/man/plotmixt.Rd | 4 ks-1.11.0/ks/man/rkde.Rd |only ks-1.11.0/ks/man/vkde.Rd |only ks-1.11.0/ks/man/worldbank.Rd |only ks-1.11.0/ks/src/ks.c | 4 69 files changed, 1177 insertions(+), 1081 deletions(-)
Title: Kernel k Nearest Neighbors
Description: Extends the simple k-nearest neighbors algorithm by incorporating numerous kernel functions and a variety of distance metrics. The package takes advantage of 'RcppArmadillo' to speed up the calculation of distances between observations.
Author: Lampros Mouselimis <mouselimislampros@gmail.com>
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between KernelKnn versions 1.0.7 dated 2017-11-30 and 1.0.8 dated 2018-01-16
DESCRIPTION | 8 - MD5 | 16 +-- NEWS.md | 4 build/vignette.rds |binary inst/doc/binary_classification_using_the_ionosphere_data.html | 44 +++++----- inst/doc/image_classification_using_MNIST_CIFAR_data.html | 4 inst/doc/regression_using_the_housing_data.html | 4 src/Makevars | 2 src/Makevars.win | 2 9 files changed, 44 insertions(+), 40 deletions(-)
Title: A Test Environment for HTTP Requests
Description: Testing and documenting code that communicates with remote servers
can be painful. Dealing with authentication, server state,
and other complications can make testing seem too costly to
bother with. But it doesn't need to be that hard. This package enables one
to test all of the logic on the R sides of the API in your package without
requiring access to the remote service. Importantly, it provides three
contexts that mock the network connection in different ways, as well as
testing functions to assert that HTTP requests were---or were
not---made. It also allows one to safely record real API responses to use as
test fixture. The ability to save responses and load them offline also
enables one to write vignettes and other dynamic documents that can be
distributed without access to a live server.
Author: Neal Richardson [aut, cre]
Maintainer: Neal Richardson <neal.p.richardson@gmail.com>
Diff between httptest versions 2.3.4 dated 2017-11-13 and 3.0.0 dated 2018-01-16
httptest-2.3.4/httptest/man/buildMockURL.Rd |only httptest-2.3.4/httptest/man/expect-verb.Rd |only httptest-2.3.4/httptest/man/fakeResponse.Rd |only httptest-2.3.4/httptest/man/with_fake_HTTP.Rd |only httptest-2.3.4/httptest/man/with_mock_API.Rd |only httptest-3.0.0/httptest/DESCRIPTION | 32 - httptest-3.0.0/httptest/MD5 | 111 +++-- httptest-3.0.0/httptest/NAMESPACE | 26 + httptest-3.0.0/httptest/NEWS.md | 39 + httptest-3.0.0/httptest/R/capture-requests.R | 166 ++++--- httptest-3.0.0/httptest/R/expect-header.R | 26 - httptest-3.0.0/httptest/R/expect-request.R | 29 - httptest-3.0.0/httptest/R/fake-http.R | 49 +- httptest-3.0.0/httptest/R/find-redactor.R |only httptest-3.0.0/httptest/R/find-requester.R |only httptest-3.0.0/httptest/R/httptest.R | 32 + httptest-3.0.0/httptest/R/mock-api.R | 101 +++- httptest-3.0.0/httptest/R/mock-paths.R | 22 - httptest-3.0.0/httptest/R/offline.R | 4 httptest-3.0.0/httptest/R/redact.R | 213 +++++++--- httptest-3.0.0/httptest/R/trace.R |only httptest-3.0.0/httptest/R/vignette.R |only httptest-3.0.0/httptest/R/without-internet.R | 34 + httptest-3.0.0/httptest/README.md | 88 +++- httptest-3.0.0/httptest/build/vignette.rds |binary httptest-3.0.0/httptest/inst/WORDLIST |only httptest-3.0.0/httptest/inst/doc/httptest.Rmd | 34 - httptest-3.0.0/httptest/inst/doc/httptest.html | 30 - httptest-3.0.0/httptest/inst/doc/redacting.Rmd | 122 +++-- httptest-3.0.0/httptest/inst/doc/redacting.html | 105 +++- httptest-3.0.0/httptest/inst/doc/vignettes.Rmd |only httptest-3.0.0/httptest/inst/doc/vignettes.html |only httptest-3.0.0/httptest/man/as-redactor.Rd |only httptest-3.0.0/httptest/man/block_requests.Rd |only httptest-3.0.0/httptest/man/build_mock_url.Rd |only httptest-3.0.0/httptest/man/capture_requests.Rd | 24 - httptest-3.0.0/httptest/man/change_state.Rd |only httptest-3.0.0/httptest/man/expect_header.Rd | 2 httptest-3.0.0/httptest/man/expect_verb.Rd |only httptest-3.0.0/httptest/man/fake_response.Rd |only httptest-3.0.0/httptest/man/find_mock_file.Rd |only httptest-3.0.0/httptest/man/get_current_redactor.Rd |only httptest-3.0.0/httptest/man/gsub_response.Rd |only httptest-3.0.0/httptest/man/httptest.Rd | 32 + httptest-3.0.0/httptest/man/mockPaths.Rd | 13 httptest-3.0.0/httptest/man/redact.Rd | 33 - httptest-3.0.0/httptest/man/save_response.Rd |only httptest-3.0.0/httptest/man/set_redactor.Rd |only httptest-3.0.0/httptest/man/set_requester.Rd |only httptest-3.0.0/httptest/man/skip_if_disconnected.Rd | 2 httptest-3.0.0/httptest/man/start_vignette.Rd |only httptest-3.0.0/httptest/man/stop_mocking.Rd |only httptest-3.0.0/httptest/man/use_mock_api.Rd |only httptest-3.0.0/httptest/man/with_fake_http.Rd |only httptest-3.0.0/httptest/man/with_mock_api.Rd |only httptest-3.0.0/httptest/man/with_trace.Rd | 5 httptest-3.0.0/httptest/man/without_internet.Rd | 9 httptest-3.0.0/httptest/tests/spelling.R |only httptest-3.0.0/httptest/tests/testthat/helper.R | 29 + httptest-3.0.0/httptest/tests/testthat/test-capture-requests.R | 96 ++-- httptest-3.0.0/httptest/tests/testthat/test-expect-header.R | 4 httptest-3.0.0/httptest/tests/testthat/test-fake-http.R | 18 httptest-3.0.0/httptest/tests/testthat/test-find-redactor.R |only httptest-3.0.0/httptest/tests/testthat/test-mock-api.R | 35 + httptest-3.0.0/httptest/tests/testthat/test-mock-paths.R | 5 httptest-3.0.0/httptest/tests/testthat/test-offline.R | 4 httptest-3.0.0/httptest/tests/testthat/test-redact.R | 146 ++++-- httptest-3.0.0/httptest/tests/testthat/test-trace.R |only httptest-3.0.0/httptest/tests/testthat/test-vignette.R |only httptest-3.0.0/httptest/tests/testthat/testpkg |only httptest-3.0.0/httptest/vignettes/httptest.Rmd | 34 - httptest-3.0.0/httptest/vignettes/redacting.Rmd | 122 +++-- httptest-3.0.0/httptest/vignettes/vignettes.Rmd |only 73 files changed, 1227 insertions(+), 649 deletions(-)
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Author: Stéphane Dray, Guillaume Blanchet, Daniel Borcard, Sylvie Clappe, Guillaume Guenard,
Thibaut Jombart, Guillaume Larocque, Pierre Legendre, Naima Madi, Helene H Wagner
Maintainer: Stéphane Dray <stephane.dray@univ-lyon1.fr>
Diff between adespatial versions 0.1-0 dated 2017-12-18 and 0.1-1 dated 2018-01-16
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- R/msr.mantelrtest.R | 10 +++++----- build/vignette.rds |binary inst/doc/tutorial.html | 6 +++--- man/msr.mantelrtest.Rd | 10 +++++----- 6 files changed, 24 insertions(+), 24 deletions(-)
Title: Statistical Analysis of Chemistry, Histopathology, and
Reproduction Endpoints Including Repeated Measures and
Multi-Generation Studies
Description: A front end for the statistical analyses involved in the tier II endocrine
disruptor screening program. The analyses available to this package are:
Rao-Scott adjusted Cochran-Armitage test for trend By Slices (RSCABS),
a Standard Cochran-Armitage test for trend By Slices (SCABS),
mixed effects Cox proportional model, Jonckheere-Terpstra step down trend test
Dunn test, one way ANOVA, weighted ANOVA, mixed effects ANOVA, repeated
measures ANOVA, and Dunnett test.
Author: Joe Swintek [aut, cre],
Kevin Flynn [ctb],
Jon Haselman [ctb]
Maintainer: Joe Swintek <swintek.joe@epa.gov>
Diff between StatCharrms versions 0.90.6 dated 2017-11-08 and 0.90.7 dated 2018-01-16
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/Run.StatCharrms.R | 2 +- R/ShowChangeLog.R | 6 +++++- R/forceStdAnalysis.R | 15 ++++++++++----- inst/doc/StatCharrms.Rnw | 12 ++++++------ inst/doc/StatCharrms.pdf |binary vignettes/StatCharrms.Rnw | 12 ++++++------ vignettes/StatCharrms.tex | 12 ++++++------ 9 files changed, 46 insertions(+), 37 deletions(-)
Title: Multiple Mediation Analysis
Description: Used for general multiple mediation analysis.
The analysis method is described in Yu et al. (2014) <doi:10.4172/2155-6180.1000189> "General Multiple Mediation Analysis With an Application to Explore Racial Disparity in Breast Cancer Survival", published on Journal of Biometrics & Biostatistics, 5(2):189; and Yu et al.(2017) <DOI:10.1016/j.sste.2017.02.001> "Exploring racial disparity in obesity: a mediation analysis considering geo-coded environmental factors", published on Spatial and Spatio-temporal Epidemiology, 21, 13-23.
Author: Qingzhao Yu and Bin Li
Maintainer: Qingzhao Yu <qyu@lsuhsc.edu>
Diff between mma versions 5.0-1 dated 2017-09-22 and 6.0-0 dated 2018-01-16
mma-5.0-1/mma/man/med.par.Rd |only mma-6.0-0/mma/DESCRIPTION | 10 mma-6.0-0/mma/MD5 | 31 mma-6.0-0/mma/R/mma.r | 5562 ++++++++++++++++++---------------- mma-6.0-0/mma/man/boot.med.Rd | 113 mma-6.0-0/mma/man/boot.med.par.Rd | 34 mma-6.0-0/mma/man/data.org.Rd | 107 mma-6.0-0/mma/man/med.Rd | 95 mma-6.0-0/mma/man/mma-package.Rd | 35 mma-6.0-0/mma/man/mma.Rd | 72 mma-6.0-0/mma/man/mma.par.Rd | 48 mma-6.0-0/mma/man/plot.med.Rd | 12 mma-6.0-0/mma/man/plot.mma.Rd | 10 mma-6.0-0/mma/man/print.med.Rd | 17 mma-6.0-0/mma/man/print.mma.Rd | 13 mma-6.0-0/mma/man/summary.med_iden.Rd | 12 mma-6.0-0/mma/man/summary.mma.Rd | 9 17 files changed, 3462 insertions(+), 2718 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-09 1.1
Title: 'lp_solve' Plugin for the 'R' Optimization Infrastructure
Description: Enhances the 'R' Optimization Infrastructure ('ROI') package
with the 'lp_solve' solver.
Author: Florian Schwendinger [aut, cre]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between ROI.plugin.lpsolve versions 0.3-0 dated 2017-10-22 and 0.3-1 dated 2018-01-16
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/plugin.R | 44 +++++++++++++++++++++++++------------------- 3 files changed, 30 insertions(+), 24 deletions(-)
More information about ROI.plugin.lpsolve at CRAN
Permanent link
Title: Combine and Export Data Frames
Description: Functions to combine data.frames in ways that require additional effort in
base R, and to add metadata (id, title, ...) that can be used for printing and
xlsx export. The 'Tatoo_report' class is provided as a
convenient helper to write several such tables to a workbook, one table per
worksheet.
Author: Stefan Fleck [aut, cre]
Maintainer: Stefan Fleck <stefan.b.fleck@gmail.com>
Diff between tatoo versions 1.0.8 dated 2017-10-10 and 1.0.9 dated 2018-01-16
tatoo-1.0.8/tatoo/tests/testthat/manual_tests/test_xlsx_output.R |only tatoo-1.0.9/tatoo/DESCRIPTION | 16 tatoo-1.0.9/tatoo/LICENSE | 4 tatoo-1.0.9/tatoo/MD5 | 160 - tatoo-1.0.9/tatoo/NAMESPACE | 177 - tatoo-1.0.9/tatoo/NEWS.md | 68 tatoo-1.0.9/tatoo/R/Composite_table.R | 1252 ++++---- tatoo-1.0.9/tatoo/R/Mashed_table.R | 1518 +++++----- tatoo-1.0.9/tatoo/R/Stacked_table.R | 390 +- tatoo-1.0.9/tatoo/R/Tagged_table.R | 878 ++--- tatoo-1.0.9/tatoo/R/Tatoo_report.R | 186 - tatoo-1.0.9/tatoo/R/Tatoo_table.R | 94 tatoo-1.0.9/tatoo/R/as_latex.R |only tatoo-1.0.9/tatoo/R/as_lines.R | 792 ++--- tatoo-1.0.9/tatoo/R/as_workbook.R | 1051 +++--- tatoo-1.0.9/tatoo/R/styles.R | 12 tatoo-1.0.9/tatoo/R/tatoo-package.R | 5 tatoo-1.0.9/tatoo/R/utils-hammr.R | 806 ++--- tatoo-1.0.9/tatoo/R/utils.R | 216 - tatoo-1.0.9/tatoo/README.md | 82 tatoo-1.0.9/tatoo/build/vignette.rds |binary tatoo-1.0.9/tatoo/inst/doc/tatoo.R | 308 +- tatoo-1.0.9/tatoo/inst/doc/tatoo.Rmd | 604 +-- tatoo-1.0.9/tatoo/inst/doc/tatoo.html | 958 +++--- tatoo-1.0.9/tatoo/inst/templates |only tatoo-1.0.9/tatoo/man/Composite_table.Rd | 148 tatoo-1.0.9/tatoo/man/Mashed_table.Rd | 246 - tatoo-1.0.9/tatoo/man/Stacked_table.Rd | 134 tatoo-1.0.9/tatoo/man/Tagged_table.Rd | 142 tatoo-1.0.9/tatoo/man/Tatoo_report.Rd | 60 tatoo-1.0.9/tatoo/man/as.data.table.Composite_table.Rd | 84 tatoo-1.0.9/tatoo/man/as.data.table.Mashed_table.Rd | 102 tatoo-1.0.9/tatoo/man/as_Composite_table.Rd | 142 tatoo-1.0.9/tatoo/man/as_Mashed_table.Rd | 54 tatoo-1.0.9/tatoo/man/as_latex.Composite_table.Rd |only tatoo-1.0.9/tatoo/man/as_latex.Mashed_table.Rd |only tatoo-1.0.9/tatoo/man/as_latex.Rd |only tatoo-1.0.9/tatoo/man/as_latex.Tagged_table.Rd |only tatoo-1.0.9/tatoo/man/as_latex.Tatoo_report.Rd |only tatoo-1.0.9/tatoo/man/as_latex.data.frame.Rd |only tatoo-1.0.9/tatoo/man/as_lines.Rd | 112 tatoo-1.0.9/tatoo/man/as_multinames.Rd | 72 tatoo-1.0.9/tatoo/man/as_workbook.Rd | 151 tatoo-1.0.9/tatoo/man/assign_tt_meta.Rd | 34 tatoo-1.0.9/tatoo/man/cmash.Rd | 162 - tatoo-1.0.9/tatoo/man/default_kable_options.Rd |only tatoo-1.0.9/tatoo/man/df_typecast_all.Rd | 44 tatoo-1.0.9/tatoo/man/flip_names.Rd | 72 tatoo-1.0.9/tatoo/man/is_Stacked_table.Rd | 36 tatoo-1.0.9/tatoo/man/is_Tagged_table.Rd | 28 tatoo-1.0.9/tatoo/man/is_Tatoo_report.Rd | 36 tatoo-1.0.9/tatoo/man/is_Tatoo_table.Rd | 36 tatoo-1.0.9/tatoo/man/is_any_class.Rd | 38 tatoo-1.0.9/tatoo/man/is_class.Rd | 64 tatoo-1.0.9/tatoo/man/is_col_classes.Rd | 42 tatoo-1.0.9/tatoo/man/mashed_set.Rd | 58 tatoo-1.0.9/tatoo/man/multinames.Rd | 84 tatoo-1.0.9/tatoo/man/multinames_to_colspans.Rd |only tatoo-1.0.9/tatoo/man/open_file.Rd |only tatoo-1.0.9/tatoo/man/print.Composite_table.Rd | 44 tatoo-1.0.9/tatoo/man/print.Mashed_table.Rd | 64 tatoo-1.0.9/tatoo/man/print.Stacked_table.Rd | 38 tatoo-1.0.9/tatoo/man/print.TT_meta.Rd | 38 tatoo-1.0.9/tatoo/man/print.Tagged_table.Rd | 38 tatoo-1.0.9/tatoo/man/print.Tatoo_report.Rd | 38 tatoo-1.0.9/tatoo/man/sanitize_excel_sheet_names.Rd | 70 tatoo-1.0.9/tatoo/man/spacing-set.Rd | 38 tatoo-1.0.9/tatoo/man/str_nobreak.Rd | 34 tatoo-1.0.9/tatoo/man/tagged_set.Rd | 76 tatoo-1.0.9/tatoo/man/tatoo.Rd | 84 tatoo-1.0.9/tatoo/man/tatoo_table.Rd | 74 tatoo-1.0.9/tatoo/man/tt_meta.Rd | 70 tatoo-1.0.9/tatoo/man/vec_prioritise.Rd | 44 tatoo-1.0.9/tatoo/man/write_worksheet.Rd | 144 tatoo-1.0.9/tatoo/tests/testthat.R | 8 tatoo-1.0.9/tatoo/tests/testthat/manual_tests/test_as_lines.R | 56 tatoo-1.0.9/tatoo/tests/testthat/manual_tests/test_output_formats.R |only tatoo-1.0.9/tatoo/tests/testthat/manual_tests/test_print_methods.R | 64 tatoo-1.0.9/tatoo/tests/testthat/test_Composite_table.R | 381 +- tatoo-1.0.9/tatoo/tests/testthat/test_Mashed_table.R | 572 +-- tatoo-1.0.9/tatoo/tests/testthat/test_Stacked_table.R | 46 tatoo-1.0.9/tatoo/tests/testthat/test_Tagged_table.R | 304 +- tatoo-1.0.9/tatoo/tests/testthat/test_as_workbook.R | 56 tatoo-1.0.9/tatoo/tests/testthat/test_save_xlsx.R | 64 tatoo-1.0.9/tatoo/tests/testthat/test_utils.R | 74 tatoo-1.0.9/tatoo/tests/testthat/testdata/testdata.R | 318 +- tatoo-1.0.9/tatoo/vignettes/Thumbs.db |only tatoo-1.0.9/tatoo/vignettes/tatoo.Rmd | 604 +-- 88 files changed, 7663 insertions(+), 7536 deletions(-)
Title: Nonparametric and Stochastic Efficiency and Productivity
Analysis
Description: Provides a variety of tools for nonparametric and parametric efficiency measurement.
Author: Oleg Badunenko [aut, cre],
Yaryna Kolomiytseva [aut],
Pavlo Mozharovskyi [aut]
Maintainer: Oleg Badunenko <oleg.badunenko@port.ac.uk>
Diff between npsf versions 0.2.0 dated 2017-01-19 and 0.3.0 dated 2018-01-16
npsf-0.2.0/npsf/LICENSE |only npsf-0.2.0/npsf/data/banks05.txt.gz |only npsf-0.2.0/npsf/data/ccr81.txt.gz |only npsf-0.2.0/npsf/data/mroz.txt.gz |only npsf-0.2.0/npsf/data/pwt56.txt.gz |only npsf-0.2.0/npsf/data/usmanuf.txt.gz |only npsf-0.2.0/npsf/src/libglpk |only npsf-0.2.0/npsf/src/libqhull |only npsf-0.2.0/npsf/src/nonradial.c |only npsf-0.2.0/npsf/src/qhAdapter.c |only npsf-0.2.0/npsf/src/qhAdapter.h |only npsf-0.2.0/npsf/src/radial.c |only npsf-0.3.0/npsf/ChangeLog | 14 + npsf-0.3.0/npsf/DESCRIPTION | 11 - npsf-0.3.0/npsf/MD5 | 320 +++--------------------------------- npsf-0.3.0/npsf/NAMESPACE | 2 npsf-0.3.0/npsf/R/npsf-internal.R | 15 - npsf-0.3.0/npsf/R/nptestind.R | 2 npsf-0.3.0/npsf/R/nptestrts.R | 6 npsf-0.3.0/npsf/R/sf.R | 19 +- npsf-0.3.0/npsf/R/tenonradial.R | 2 npsf-0.3.0/npsf/R/teradial.R | 6 npsf-0.3.0/npsf/R/teradialbc.R | 10 - npsf-0.3.0/npsf/data/banks05.txt |only npsf-0.3.0/npsf/data/ccr81.txt |only npsf-0.3.0/npsf/data/mroz.txt |only npsf-0.3.0/npsf/data/pwt56.txt |only npsf-0.3.0/npsf/data/usmanuf.txt |only npsf-0.3.0/npsf/man/mroz.Rd | 4 npsf-0.3.0/npsf/man/nptestrts.Rd | 8 npsf-0.3.0/npsf/man/teradial.Rd | 5 npsf-0.3.0/npsf/man/teradialbc.Rd | 6 npsf-0.3.0/npsf/src/Makevars | 7 npsf-0.3.0/npsf/src/Makevars.win |only npsf-0.3.0/npsf/src/init.c |only npsf-0.3.0/npsf/src/nllpk |only npsf-0.3.0/npsf/src/nonradial.cpp |only npsf-0.3.0/npsf/src/radial.cpp |only 38 files changed, 101 insertions(+), 336 deletions(-)
Title: Calling Copy Number Alterations in Amplicon Sequencing Data
Description: Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.
Author: Jan Budczies, Eva Romanovsky
Maintainer: Jan Budczies <jan.budczies@charite.de>
Diff between ioncopy versions 2.0 dated 2017-12-05 and 2.0.1 dated 2018-01-16
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/call.CNA.R | 24 ++---------------------- 3 files changed, 9 insertions(+), 29 deletions(-)
Title: Segmentation and Classification of Accelerometer Data
Description: Segmentation and classification procedures for data from the 'Activinsights GENEActiv' <https://www.activinsights.com/products/geneactiv/> accelerometer that provides the user with a model to guess behaviour from test data where behaviour is missing.
Includes a step counting algorithm, a function to create segmented data with custom features and a function to use recursive partitioning provided in the function rpart() of the 'rpart' package to create classification models.
Author: Chris Campbell [aut],
Aimee Gott [aut],
Joss Langford [aut],
Charles Sweetland [aut, cre],
Activinsights Ltd [cph]
Maintainer: Charles Sweetland <charles@sweetland-solutions.co.uk>
Diff between GENEAclassify versions 1.4.7 dated 2018-01-08 and 1.4.8 dated 2018-01-16
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/getGENEAsegments.R | 6 +++--- R/segmentation.R | 8 ++++---- R/stepCounter.R | 19 +++++++------------ man/getGENEAsegments.Rd | 6 +++--- man/segmentation.Rd | 6 +++--- man/stepCounter.Rd | 3 ++- 8 files changed, 33 insertions(+), 37 deletions(-)
Title: An Amphibian Systematics Tool
Description: Provides a workflow for combining amphibian taxonomic data sets from different sources that use different taxonomic nomenclature, by suggesting the most current nomenclature used by the Amphibian Species of the World: an Online Reference, Frost (2017) <http://research.amnh.org/herpetology/amphibia/index.html> for a given input query of species names. It can also be used to extract specific systematic information (e.g. species downstream of a given taxonomic level).
Author: H. Christoph Liedtke
Maintainer: H. Christoph Liedtke <christoph.liedtke@ebd.csic.es>
Diff between defrostR versions 1.0.0 dated 2017-08-09 and 1.1.0 dated 2018-01-16
DESCRIPTION | 10 MD5 | 24 NAMESPACE | 1 R/defrost.R | 9 R/getSynonyms.R | 16 R/searchASW.R |only build/vignette.rds |binary data/asw_synonyms.rda |binary data/asw_taxonomy.rda |binary inst/doc/defrostR_tutorial.R | 4 inst/doc/defrostR_tutorial.Rmd | 4 inst/doc/defrostR_tutorial.html | 1272 ++++++++++++++++++++-------------------- man/searchASW.Rd |only vignettes/defrostR_tutorial.Rmd | 4 14 files changed, 706 insertions(+), 638 deletions(-)
Title: Data-Driven Identification of SVAR Models
Description: Implements data-driven identification methods for structural vector autoregressive (SVAR) models.
Based on an existing VAR model object (provided by e.g. VAR() from the 'vars' package), the structural
impact matrix is obtained via data-driven identification techniques (i.e. changes in volatility (Rigobon, R. (2003) <doi:10.1162/003465303772815727>),
least dependent innovations (Herwartz, H., Ploedt, M., (2016) <doi:10.1016/j.jimonfin.2015.11.001>) or non-Gaussian maximum likelihood (Lanne, M., Meitz, M., Saikkonen, P. (2017) <doi:10.1016/j.jeconom.2016.06.002>).
Author: Alexander Lange [aut, cre],
Bernhard Dalheimer [aut],
Helmut Herwartz [aut],
Simone Maxand [aut],
Hannes Riebl [ctb]
Maintainer: Alexander Lange <alexander.lange@uni-goettingen.de>
Diff between svars versions 1.0.1 dated 2017-12-13 and 1.1.0 dated 2018-01-16
svars-1.0.1/svars/R/plot.boot.R |only svars-1.1.0/svars/DESCRIPTION | 8 +- svars-1.1.0/svars/MD5 | 26 ++++--- svars-1.1.0/svars/NAMESPACE | 6 + svars-1.1.0/svars/R/bootstrap_mb.R | 4 - svars-1.1.0/svars/R/bootstrap_wild.R | 2 svars-1.1.0/svars/R/fev.R |only svars-1.1.0/svars/R/hd.R |only svars-1.1.0/svars/R/id.cvm.R | 12 +-- svars-1.1.0/svars/R/id.ngml.R | 114 +++++++++++++++++------------------ svars-1.1.0/svars/R/ld.dc.R | 4 - svars-1.1.0/svars/R/plot.sboot.R |only svars-1.1.0/svars/R/plot_fevd.R |only svars-1.1.0/svars/R/plot_hd.R |only svars-1.1.0/svars/man/fev.Rd |only svars-1.1.0/svars/man/hd.Rd |only svars-1.1.0/svars/man/id.cvm.Rd | 4 - svars-1.1.0/svars/man/mb.boot.Rd | 2 18 files changed, 95 insertions(+), 87 deletions(-)
Title: Sparse Principal Component Analysis via Random Projections
(SPCAvRP)
Description: Implements the SPCAvRP algorithm, developed and analysed in "Sparse principal component analysis via random projections" Gataric, M., Wang, T. and Samworth, R. J. (2017) <arXiv:1712.05630>. The algorithm is based on the aggregation of eigenvector information from carefully-selected random projections of the sample covariance matrix.
Author: Milana Gataric, Tengyao Wang and Richard J. Samworth
Maintainer: Milana Gataric <m.gataric@statslab.cam.ac.uk>
Diff between SPCAvRP versions 0.1 dated 2017-12-20 and 0.2 dated 2018-01-16
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++++----- NAMESPACE | 3 ++- R/SPCAvRP.R | 1 - R/SPCAvRP_deflation.R |only R/SPCAvRP_subspace.R |only R/select_projections_subspace.R |only man/SPCAvRP.Rd | 4 ++-- man/SPCAvRP_deflation.Rd |only man/SPCAvRP_parallel.Rd | 4 ++-- man/SPCAvRP_subspace.Rd |only man/select_projections_subspace.Rd |only 12 files changed, 21 insertions(+), 15 deletions(-)
Title: Interface to the OpenCage API
Description: Tool for accessing the OpenCage API, which provides forward
geocoding (from placename to longitude and latitude) and reverse geocoding (from
longitude and latitude to placename).
Author: Maëlle Salmon [aut, cre],
Noam Ross [ctb],
Julia Silge [rev] (Julia Silge reviewed the package for rOpenSci, see
https://github.com/ropensci/onboarding/issues/36.),
Jake Russ [ctb],
Daniel Possenriede [ctb]
Maintainer: Maëlle Salmon <maelle.salmon@yahoo.se>
Diff between opencage versions 0.1.2 dated 2017-05-12 and 0.1.4 dated 2018-01-16
DESCRIPTION | 19 MD5 | 32 NEWS.md | 8 R/forward_geocoding.R | 11 R/globalVariables.R | 2 R/reverse_geocoding.R | 17 R/utils.R | 450 ++-- build/vignette.rds |binary data/code_message.RData |binary data/countrycodes.RData |binary data/languagecodes.RData |binary inst/doc/opencage.Rmd | 270 +- inst/doc/opencage.html | 2882 ++++++++++++++++------------- man/opencage_forward.Rd | 6 man/opencage_reverse.Rd | 6 tests/testthat/test-opencage_query_check.R | 292 +- vignettes/opencage.Rmd | 270 +- 17 files changed, 2409 insertions(+), 1856 deletions(-)
Title: Monte Carlo Option Pricing Algorithm for Jump Diffusion Models
with Correlational Companies
Description: Black-Scholes model [Black (1973) <doi:10.1086/260062>] is important to calculate option premiums in the stock market, and variety of improved models are studied. In this package, I propose methods in order to calculate both Black-Scholes model and Jump diffusion model [Kou (2002) <doi:10.1287/mnsc.48.8.1086.166>] by Monte Carlo methods. This package can be used for computational finance.
Author: Masashi Okada [aut, cre]
Maintainer: Masashi Okada <okadaalgorithm@gmail.com>
Diff between Jdmbs versions 1.0 dated 2017-02-15 and 1.1 dated 2018-01-16
DESCRIPTION | 24 +++---- MD5 | 27 ++++---- R/Jdmbs.R | 4 - R/JdmbsJump.R | 4 - R/JdmbsNewJump.R | 4 - build/vignette.rds |binary inst/doc/Jdmbs-vignette.R | 30 +------- inst/doc/Jdmbs-vignette.Rmd | 144 ++++++++++++++++++------------------------- inst/doc/Jdmbs-vignette.pdf |binary man/data.Rd | 1 man/jdm_bs.Rd | 5 - man/jdm_new_bs.Rd | 5 - man/normal_bs.Rd | 5 - vignettes/Jdmbs-vignette.Rmd | 144 ++++++++++++++++++------------------------- vignettes/companies.png |only 15 files changed, 169 insertions(+), 228 deletions(-)
Title: Computation of the Sparse Inverse Subset
Description: Creates a wrapper for the 'SuiteSparse' routines
that execute the Takahashi equations. These equations compute the
elements of the inverse of a sparse matrix at locations where the
its Cholesky factor is non-zero. The resulting matrix is known as a
sparse inverse subset. Some helper functions are also implemented.
Support for spam matrices is currently limited and will be implemented
in the future. See Rue and Martino (2007) <doi:10.1016/j.jspi.2006.07.016>
and Zammit-Mangion and Rougier (2017) <arXiv:1707.00892> for the
application of these equations to statistics.
Author: Andrew Zammit-Mangion [aut, cre],
Timothy Davis [ctb],
Patrick Amestoy [ctb],
Iain Duff [ctb],
John K. Reid [ctb]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between sparseinv versions 0.1 dated 2018-01-15 and 0.1.1 dated 2018-01-16
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/amd_order_wrapper.c | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Simple Peak Alignment for Gas-Chromatography Data
Description: Aligns peak based on peak retention times and matches homologous peaks
across samples. The underlying alignment procedure comprises three sequential steps.
(1) Full alignment of samples by linear transformation of retention times to
maximise similarity among homologous peaks (2) Partial alignment of peaks within
a user-defined retention time window to cluster homologous peaks (3) Merging rows
that are likely representing homologous substances (i.e. no sample shows peaks in
both rows and the rows have similar retention time means). The algorithm is described in detail
in Ottensmann et al. submitted <doi:10.1101/110494>.
Author: Meinolf Ottensmann [aut, cre],
Martin Stoffel [aut],
Hazel J. Nichols [aut],
Joseph I. Hoffman [aut]
Maintainer: Meinolf Ottensmann <meinolf.ottensmann@web.de>
Diff between GCalignR versions 1.0.0 dated 2017-09-14 and 1.0.1 dated 2018-01-16
DESCRIPTION | 8 ++--- MD5 | 24 ++++++++-------- R/align_chromatograms.R | 18 ++++-------- R/align_peaks.R | 6 ++-- R/choose_optimal_reference.R | 2 - R/formatting_filtering_gc_data.R | 27 ++++++++++++++++-- R/linear_transformation.R | 2 - R/remove_blanks.R | 20 ++++++++----- README.md | 19 ++---------- build/vignette.rds |binary inst/doc/GCalignR_How_does_the_Algorithm_works.html | 26 ++++++++--------- inst/doc/GCalignR_step_by_step.html | 30 ++++++++++---------- tests/testthat/test-norm_peaks.R | 2 - 13 files changed, 99 insertions(+), 85 deletions(-)
Title: 'MsgPack' C++ Header Files and Interface Functions for R
Description: 'MsgPack' header files are provided for use by R packages, along
with the ability to access, create and alter 'MsgPack' objects directly from R.
'MsgPack' is an efficient binary serialization format. It lets you exchange
data among multiple languages like 'JSON' but it is faster and smaller.
Small integers are encoded into a single byte, and typical short strings
require only one extra byte in addition to the strings themselves. This
package provides headers from the 'msgpack-c' implementation for C and
C++(11) for use by R, particularly 'Rcpp'. The included 'msgpack-c' headers
are licensed under the Boost Software License (Version 1.0); the code added
by this package as well the R integration are licensed under the GPL (>= 2).
See the files 'COPYRIGHTS' and 'AUTHORS' for a full list of copyright holders
and contributors to 'msgpack-c'.
Author: Travers Ching and Dirk Eddelbuettel; the authors and contributors of MsgPack
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppMsgPack versions 0.2.0 dated 2017-09-07 and 0.2.1 dated 2018-01-16
RcppMsgPack-0.2.0/RcppMsgPack/src/c_pack.cpp |only RcppMsgPack-0.2.0/RcppMsgPack/src/c_unpack.cpp |only RcppMsgPack-0.2.1/RcppMsgPack/ChangeLog | 82 +++++++++ RcppMsgPack-0.2.1/RcppMsgPack/DESCRIPTION | 32 ++- RcppMsgPack-0.2.1/RcppMsgPack/MD5 | 56 +++--- RcppMsgPack-0.2.1/RcppMsgPack/NAMESPACE | 1 RcppMsgPack-0.2.1/RcppMsgPack/R/RcppExports.R | 24 +- RcppMsgPack-0.2.1/RcppMsgPack/R/functions.r | 59 ++++++- RcppMsgPack-0.2.1/RcppMsgPack/README.md | 28 +++ RcppMsgPack-0.2.1/RcppMsgPack/build/partial.rdb |binary RcppMsgPack-0.2.1/RcppMsgPack/build/vignette.rds |binary RcppMsgPack-0.2.1/RcppMsgPack/inst/AUTHORS | 3 RcppMsgPack-0.2.1/RcppMsgPack/inst/COPYRIGHTS | 2 RcppMsgPack-0.2.1/RcppMsgPack/inst/NEWS.Rd | 18 +- RcppMsgPack-0.2.1/RcppMsgPack/inst/doc/vignette.R | 2 RcppMsgPack-0.2.1/RcppMsgPack/inst/doc/vignette.html | 17 -- RcppMsgPack-0.2.1/RcppMsgPack/inst/doc/vignette.rmd | 9 - RcppMsgPack-0.2.1/RcppMsgPack/inst/include/msgpack/v1/adaptor/array_ref.hpp | 14 - RcppMsgPack-0.2.1/RcppMsgPack/inst/include/msgpack/v1/adaptor/boost/optional.hpp | 14 - RcppMsgPack-0.2.1/RcppMsgPack/inst/include/msgpack/v1/adaptor/map.hpp | 14 - RcppMsgPack-0.2.1/RcppMsgPack/inst/include/msgpack/v1/adaptor/vector.hpp | 14 - RcppMsgPack-0.2.1/RcppMsgPack/inst/include/msgpack/v1/adaptor/vector_char.hpp | 28 +-- RcppMsgPack-0.2.1/RcppMsgPack/inst/include/msgpack/v1/adaptor/vector_unsigned_char.hpp | 28 +-- RcppMsgPack-0.2.1/RcppMsgPack/inst/include/msgpack/v2/x3_parse.hpp | 8 RcppMsgPack-0.2.1/RcppMsgPack/man/msgpack_timestamp_decode.Rd |only RcppMsgPack-0.2.1/RcppMsgPack/man/msgpack_timestamp_encode.Rd |only RcppMsgPack-0.2.1/RcppMsgPack/man/msgpack_unpack.Rd | 6 RcppMsgPack-0.2.1/RcppMsgPack/src/RcppExports.cpp | 52 ++++-- RcppMsgPack-0.2.1/RcppMsgPack/src/anyvector.h |only RcppMsgPack-0.2.1/RcppMsgPack/src/rcppmsgpack_c_functions.cpp |only RcppMsgPack-0.2.1/RcppMsgPack/tests/tests.r | 84 ++++++++-- RcppMsgPack-0.2.1/RcppMsgPack/vignettes/vignette.rmd | 9 - 32 files changed, 438 insertions(+), 166 deletions(-)
Title: Loading Fonts into R
Description: Loading system fonts and Google Fonts
<https://fonts.google.com/> into R, in order to
support other packages such as 'R2SWF' and 'showtext'.
Author: Yixuan Qiu and authors/contributors of the
included fonts. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between sysfonts versions 0.7.1 dated 2017-09-09 and 0.7.2 dated 2018-01-16
DESCRIPTION | 8 - MD5 | 20 +-- inst/NEWS.Rd | 203 +++++++++++++++++++----------------- inst/fonts/webfonts.bz2 |binary man/font_add.Rd | 242 ++++++++++++++++++++++---------------------- man/font_add_google.Rd | 150 +++++++++++++-------------- man/font_families.Rd | 80 +++++++------- man/font_families_google.Rd | 70 ++++++------ man/font_files.Rd | 64 +++++------ man/font_paths.Rd | 90 ++++++++-------- src/Makevars.win | 2 11 files changed, 471 insertions(+), 458 deletions(-)
Title: Using Fonts More Easily in R Graphs
Description: Making it easy to use various types of fonts ('TrueType',
'OpenType', Type 1, web fonts, etc.) in R graphs, and supporting most output
formats of R graphics including PNG, PDF and SVG. Text glyphs will be converted
into polygons or raster images, hence after the plot has been created, it no
longer relies on the font files. No external software such as 'Ghostscript' is
needed to use this package.
Author: Yixuan Qiu and authors/contributors of the
included software. See file AUTHORS for details.
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between showtext versions 0.5 dated 2017-09-22 and 0.5-1 dated 2018-01-16
DESCRIPTION | 12 - MD5 | 16 - build/vignette.rds |binary inst/NEWS.Rd | 7 inst/doc/introduction.R | 62 +++--- inst/doc/introduction.Rmd | 416 ++++++++++++++++++++++----------------------- inst/doc/introduction.html | 404 +++++++++++++++++++++---------------------- src/Makevars.win | 2 vignettes/introduction.Rmd | 416 ++++++++++++++++++++++----------------------- 9 files changed, 671 insertions(+), 664 deletions(-)
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://www.asprs.org/committee-general/laser-las-file-format-exchange-activities.html>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.3 <https://www.laszip.org/>.
Author: Jean-Romain Roussel [aut, cre, cph],
Martin Isenburg [cph] (Is the author of the LASlib and LASzip
libraries),
David Auty [ctb] (Reviewed the documentation),
Pierrick Marie [ctb] (Helped to compile LASlib code in R),
Florian De Boissieu [ctb] (Enable support of .lax file and extra byte
attributes)
Maintainer: Jean-Romain Roussel <jean-romain.roussel.1@ulaval.ca>
Diff between rlas versions 1.1.5 dated 2017-09-22 and 1.1.8 dated 2018-01-16
DESCRIPTION | 16 - MD5 | 39 +-- NEWS.md | 11 R/RcppExports.R | 8 R/readLAS.r | 64 +++-- README.md | 50 +++- inst/extdata/extra_byte.laz |only inst/include/lasreadermerged.hpp | 6 inst/include/rlasstreamer.h |only man/readlasdata.Rd | 12 - src/LASlib/lasreadermerged.cpp | 231 ++++++++++--------- src/LASlib/laswriter_las.cpp | 2 src/LASzip/lasreadpoint.cpp | 2 src/LASzip/laszip.cpp | 2 src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 32 +- src/init.c | 18 - src/readLAS.cpp | 389 +++++---------------------------- src/readheader.cpp | 453 ++++++++++++++++++++++++--------------- src/rlasstreamer.cpp |only tests |only 22 files changed, 641 insertions(+), 696 deletions(-)
Title: Creating Pretty Documents from R Markdown
Description: Creating tiny yet beautiful documents and vignettes from R
Markdown. The package provides the 'html_pretty' output format as an
alternative to the 'html_document' and 'html_vignette' engines that
convert R Markdown into HTML pages. Various themes and syntax highlight
styles are supported.
Author: Yixuan Qiu [aut, cre],
Jason Long [ctb] (the Cayman, Tactile and Architect themes),
Renyuan Zou [ctb] (the Leonids theme),
Michael Rose [ctb] (the HPSTR theme),
JJ Allaire [ctb] (pandoc template for rmarkdown),
Hadley Wickham [ctb] (the html_vignette() function),
Yihui Xie [ctb] (the html_vignette() function),
Steve Matteson [ctb] (the Open Sans fonts)
Maintainer: Yixuan Qiu <yixuan.qiu@cos.name>
Diff between prettydoc versions 0.2.0 dated 2016-09-01 and 0.2.1 dated 2018-01-16
DESCRIPTION | 14 +++++++------- MD5 | 18 +++++++++--------- build/vignette.rds |binary inst/NEWS.Rd | 8 ++++++++ inst/doc/architect.html | 40 ++++++++++++++++++++-------------------- inst/doc/cayman.html | 40 ++++++++++++++++++++-------------------- inst/doc/hpstr.html | 40 ++++++++++++++++++++-------------------- inst/doc/leonids.html | 40 ++++++++++++++++++++-------------------- inst/doc/tactile.html | 40 ++++++++++++++++++++-------------------- man/html_pretty.Rd | 1 - 10 files changed, 124 insertions(+), 117 deletions(-)
Title: Kernel for 'Jupyter'
Description: Provides a full implementation of the 'Jupyter' <http://jupyter.org/> messaging protocol in C++ by leveraging 'Rcpp' and 'Xeus' <https://github.com/QuantStack/xeus>.
'Jupyter' supplies an interactive computing environment and a messaging protocol defined over 'ZeroMQ' for multiple programming languages. This package implements
the 'Jupyter' kernel interface so that 'R' is exposed to this interactive computing environment. 'ZeroMQ' functionality is provided by the 'pbdZMQ' package.
'Xeus' is a C++ library that facilitates the implementation of kernels for 'Jupyter'. Additionally, 'Xeus' provides an interface to libraries that exist in the 'Jupyter' ecosystem for building widgets,
plotting, and more <https://blog.jupyter.org/interactive-workflows-for-c-with-jupyter-fe9b54227d92>. 'JuniperKernel' uses 'Xeus' as a library for the 'Jupyter' messaging protocol.
Author: Spencer Aiello [aut, cre, cph],
Wei-Chen Chen [ctb],
Stephan Brumme [cph],
Jake Luciani [cph],
Tony Plate [cph],
Matthieu Decorde [cph],
RStudio (Hadley Wickham) [cph],
Sylvain Corlay [cph],
Johan Mabille [cph],
Niels Lohmann [cph]
Maintainer: Spencer Aiello <spnrpa@gmail.com>
Diff between JuniperKernel versions 1.2.1.0 dated 2018-01-05 and 1.2.2.0 dated 2018-01-16
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NEWS.md | 13 ++++++++++--- R/comm_close.R | 15 +++++---------- R/comm_info_request.R | 2 +- R/comm_msg.R | 15 +++++---------- R/comm_open.R | 15 +++++---------- R/history_request.R | 2 +- R/is_complete_request.R | 2 +- configure | 23 ++++++++++++++++++----- man/comm_close.Rd | 15 ++++----------- man/comm_info_request.Rd | 2 +- man/comm_msg.Rd | 15 ++++----------- man/comm_open.Rd | 15 ++++----------- man/history_request.Rd | 2 +- man/is_complete_request.Rd | 2 +- 16 files changed, 81 insertions(+), 97 deletions(-)
Title: Easy Management of File Names
Description: Create descriptive file names with ease. New file names are
automatically (but optionally) time stamped and placed in date stamped
directories. Streamline your analysis pipeline with input and output file
names that have informative tags and proper file extensions.
Author: David J. H. Shih
Maintainer: David J. H. Shih <djh.shih@gmail.com>
Diff between filenamer versions 0.2.1 dated 2016-04-04 and 0.2.2 dated 2018-01-16
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- R/filename.R | 17 +++++++++++------ R/set.R | 16 +++++++++++----- man/as.character.filename.Rd | 1 - man/as.filename.Rd | 3 +-- man/filename.Rd | 2 +- man/insert.Rd | 3 +-- man/is.filename.Rd | 1 - man/make_path.Rd | 3 +-- man/set_fdate.Rd | 1 - man/set_fext.Rd | 5 +++-- man/set_fpath.Rd | 1 - man/set_ftime.Rd | 1 - man/tag.Rd | 1 - man/trim_ext.Rd | 1 - 16 files changed, 49 insertions(+), 47 deletions(-)