Title: Create Waterfall Charts using 'ggplot2' Simply
Description: A not uncommon task for quants is to create 'waterfall charts'. There seems to be no simple way to do this in 'ggplot2' currently. This package contains a single function (waterfall) that simply draws a waterfall chart in a 'ggplot2' object. Some flexibility is provided, though often the object created will need to be modified through a theme.
Author: Hugh Parsonage
Maintainer: Hugh Parsonage <hugh.parsonage+waterfall@gmail.com>
Diff between waterfalls versions 0.1.1 dated 2017-02-02 and 0.1.2 dated 2018-01-25
DESCRIPTION | 12 +++--- MD5 | 6 +-- R/waterfall.R | 110 +++++++++++++++++++++++++++++++++++++++---------------- man/waterfall.Rd | 22 ++++++----- 4 files changed, 99 insertions(+), 51 deletions(-)
Title: Parallel Runs of Reverse Depends
Description: Reverse depends for a given package are queued such that multiple
workers can run the tests in parallel.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between prrd versions 0.0.1 dated 2018-01-16 and 0.0.2 dated 2018-01-25
ChangeLog | 54 ++++++++++++++++++++++++++++++++++ DESCRIPTION | 10 ++---- MD5 | 24 +++++++-------- NAMESPACE | 7 ++-- R/checks.R | 36 +++++++++++++++++++++-- R/dequeue.R | 70 ++++++++++++++++++++++++++++++++++++++------- R/enqueue.R | 57 ++++++++++++++++++++++++++++++++++-- build/partial.rdb |binary inst/NEWS.Rd | 18 +++++++++++ inst/scripts/xvfb-run-safe | 6 +++ man/dequeueJobs.Rd | 3 + man/enqueueJobs.Rd | 3 + man/getDataDirectory.Rd | 3 + 13 files changed, 254 insertions(+), 37 deletions(-)
Title: R Interface to 'Kokudo Suuchi' API
Description: Provides an interface to 'Kokudo Suuchi' API, the GIS data service of the Japanese government.
See <http://nlftp.mlit.go.jp/ksj-e/index.html> for more information.
Author: Hiroaki Yutani [aut, cre]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between kokudosuuchi versions 0.4.1 dated 2017-10-28 and 0.4.2 dated 2018-01-25
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/getKSJSummary.R | 3 ++- R/getKSJURL.R | 3 ++- 5 files changed, 17 insertions(+), 11 deletions(-)
Title: Encoding Coordinates into 'Google' Polylines
Description: Encodes simple feature ('sf') objects and coordinates using the 'Google' polyline encoding algorithm (<https://developers.google.com/maps/documentation/utilities/polylinealgorithm>).
Author: David Cooley [aut, cre]
Maintainer: David Cooley <dcooley@symbolix.com.au>
Diff between googlePolylines versions 0.2.0 dated 2018-01-09 and 0.4.0 dated 2018-01-25
DESCRIPTION | 6 +++--- MD5 | 22 ++++++++++++---------- NAMESPACE | 7 +++++++ R/Encode.R | 36 +++++++++++++++++++++++++++++++----- R/googlePolylines-package.R | 10 +--------- R/sfencoded.R |only R/wkt.R | 3 +++ README.md | 30 +++++++++++++++++------------- inst/doc/sfencode.html | 40 ++++++++++++++++++++++------------------ man/encode.Rd | 23 ++++++++++++++++++++++- tests/testthat/test-Encode.R | 26 ++++++++++++++++++++++++++ tests/testthat/test-sfencoded.R |only tests/testthat/test-wkt.R | 12 ++++++------ 13 files changed, 150 insertions(+), 65 deletions(-)
More information about googlePolylines at CRAN
Permanent link
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles,
random deviates and densities.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb],
Martin Maechler [ctb],
Torsten Hothorn <https://orcid.org/0000-0001-8301-0471> [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.0-6 dated 2017-03-02 and 1.0-7 dated 2018-01-25
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ R/mvt.R | 5 ++++- build/vignette.rds |binary inst/NEWS | 4 ++++ inst/doc/MVT_Rnews.pdf |binary man/pmvt.Rd | 2 +- 7 files changed, 21 insertions(+), 14 deletions(-)
Title: Spatial Modeling on Stream Networks
Description: Spatial statistical modeling and prediction for data on stream networks, including models based on in-stream distance (Ver Hoef, J.M. and Peterson, E.E., 2010. <DOI:10.1198/jasa.2009.ap08248>.) Models are created using moving average constructions. Spatial linear models, including explanatory variables, can be fit with (restricted) maximum likelihood. Mapping and other graphical functions are included.
Author: Jay Ver Hoef [aut, cre],
Erin Peterson [aut]
Maintainer: Jay Ver Hoef <ver.hoef@SpatialStreamNetworks.com>
Diff between SSN versions 1.1.11 dated 2018-01-16 and 1.1.12 dated 2018-01-25
DESCRIPTION | 15 ++-- MD5 | 90 ++++++++++++++-------------- R/copyLSN2temp.R | 2 R/plot.glmssn.predict.R | 3 R/plot.influenceSSN.R | 2 data/mf04.rda |binary data/mf04p.rda |binary data/modelFits.rda |binary man/AIC.glmssn.Rd | 22 ++++-- man/BLUP.Rd | 28 ++++++-- man/BlockPredict.Rd | 14 ++-- man/CrossValidationSSN.Rd | 17 +++-- man/CrossValidationStatsSSN.Rd | 20 ++++-- man/EmpiricalSemivariogram.Rd | 22 ++++-- man/GR2.Rd | 22 ++++-- man/InfoCritCompare.Rd | 12 +++ man/MiddleFork04.ssn.Rd | 6 + man/SSN-package.Rd | 42 +++++-------- man/Torgegram.Rd | 26 ++++++-- man/additive.function.Rd | 11 ++- man/as.SpatialLines.SpatialStreamNetwork.rd | 16 +++- man/boxplot.SpatialStreamNetwork.Rd | 14 +++- man/covparms.Rd | 58 +++++++++--------- man/createDistMat.Rd | 22 +++--- man/getConfusionMat.Rd | 19 ++++- man/getPreds.Rd | 14 ++-- man/getSSNdata.frame.rd | 19 +++-- man/getStreamDistMat.rd | 14 ++-- man/glmssn.Rd | 62 +++++++++++++------ man/importPredpts.Rd | 20 +++--- man/importSSN.Rd | 10 +-- man/mf04.Rd | 4 - man/mf04p.Rd | 6 + man/plot.SpatialStreamNetwork.Rd | 8 +- man/plot.Torgegram.Rd | 12 +++ man/plot.glmssn.predict.Rd | 31 +++++++-- man/plot.influenceSSN.Rd | 13 +++- man/predict.glmssn.Rd | 14 +++- man/print.summary.glmssn.Rd | 6 + man/putSSNdata.frame.Rd | 12 +++ man/residuals.glmssn.Rd | 14 +++- man/subsetSSN.Rd | 7 +- man/summary.glmssn.Rd | 12 +++ man/updatePath.Rd | 26 ++++---- man/varcomp.Rd | 22 ++++-- man/writeSSN.Rd | 11 ++- 46 files changed, 519 insertions(+), 301 deletions(-)
Title: Statistical Methods for the Analysis of Case-Control Point Data
Description: Various statistical methods for analyzing case-control point data.
Author: Joshua French
Maintainer: Joshua French <joshua.french@ucdenver.edu>
Diff between smacpod versions 1.4.1 dated 2015-09-22 and 2.0 dated 2018-01-25
DESCRIPTION | 13 - MD5 | 81 +++++---- NAMESPACE | 51 +++--- NEWS |only R/Kdest.R | 163 +++++++++++-------- R/circles.intersect.R | 85 ++++++---- R/circles.plot.R |only R/grave.R | 24 +- R/kd.R | 81 +++++---- R/kdplus.test.R | 66 ++++---- R/logrr.R | 312 +++++++++++++++++++++++--------------- R/logrr.test.R | 78 +++++---- R/nn.R | 155 +++++++++++------- R/noc.R | 84 +++++----- R/plot.kdenv.R | 95 ++++++----- R/plot.logrrenv.R | 110 +++++++------ R/plot.scan.R | 107 +++++++------ R/qnn.test.R | 198 +++++++++++++----------- R/spdensity.R | 74 ++++----- R/spscan.test.R | 126 +++++++++------ R/tolenv.R | 76 ++++----- man/circles.intersect.Rd | 89 ++++++---- man/circles.plot.Rd |only man/grave.Rd | 49 +++-- man/kd.Rd | 146 ++++++++++++----- man/kdest.Rd | 171 +++++++++++++------- man/kdplus.test.Rd | 63 +++---- man/logrr.Rd | 264 +++++++++++++++++++++++--------- man/logrr.test.Rd | 71 +++++--- man/nn.Rd | 106 +++++++----- man/noc.Rd | 66 ++++---- man/plot.kdenv.Rd | 83 +++++----- man/plot.logrrenv.Rd | 85 +++++----- man/plot.scan.Rd | 84 +++++----- man/qnn.test.Rd | 98 +++++++---- man/spdensity.Rd | 170 ++++++++++++++------ man/spscan.test.Rd | 151 +++++++++++------- tests/satscangravecases.txt | 286 +++++++++++++++++----------------- tests/satscangravecontrols.txt | 286 +++++++++++++++++----------------- tests/satscangravecoords.txt | 286 +++++++++++++++++----------------- tests/satscangraveout.txt | 254 +++++++++++++++--------------- tests/test-all.R | 2 tests/testthat/test-spscan.test.R | 50 +++--- 43 files changed, 2794 insertions(+), 2045 deletions(-)
Title: R Bindings for Gtk 2.8.0 and Above
Description: Facilities in the R language for programming
graphical interfaces using Gtk, the Gimp Tool Kit.
Author: Michael Lawrence <michafla@gene.com> and Duncan Temple Lang <duncan@wald.ucdavis.edu>
Maintainer: Michael Lawrence <michafla@gene.com>
Diff between RGtk2 versions 2.20.33 dated 2017-05-10 and 2.20.34 dated 2018-01-25
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NAMESPACE | 2 ++ R/gobject.R | 6 +++++- inst/doc/overview2.pdf |binary src/gobject.c | 11 +++++++++++ 6 files changed, 26 insertions(+), 9 deletions(-)
Title: A System of Plotting Optimized for Speed and Modularity
Description: A high-level plotting system, built using 'grid' graphics, that is
optimized for speed and modularity. This has great utility for quick
visualizations when testing code, with the key benefit that visualizations
are updated independently of one another.
Author: Eliot J B McIntire [aut, cre],
Alex M Chubaty [aut],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between quickPlot versions 0.1.2 dated 2017-10-05 and 0.1.3 dated 2018-01-25
quickPlot-0.1.2/quickPlot/vignettes/iii-plotting_files |only quickPlot-0.1.3/quickPlot/.aspell/defaults.R | 12 quickPlot-0.1.3/quickPlot/DESCRIPTION | 10 quickPlot-0.1.3/quickPlot/MD5 | 166 quickPlot-0.1.3/quickPlot/NAMESPACE | 257 quickPlot-0.1.3/quickPlot/NEWS.md | 43 quickPlot-0.1.3/quickPlot/R/environment.R | 187 quickPlot-0.1.3/quickPlot/R/plotting-classes.R | 654 - quickPlot-0.1.3/quickPlot/R/plotting-colours.R | 1152 +- quickPlot-0.1.3/quickPlot/R/plotting-helpers.R | 5013 ++++------ quickPlot-0.1.3/quickPlot/R/plotting-other.R | 1014 +- quickPlot-0.1.3/quickPlot/R/plotting.R | 1433 +- quickPlot-0.1.3/quickPlot/R/quickPlot-classes.R | 54 quickPlot-0.1.3/quickPlot/R/quickPlot-package.R | 108 quickPlot-0.1.3/quickPlot/R/zzz.R | 20 quickPlot-0.1.3/quickPlot/README.md | 92 quickPlot-0.1.3/quickPlot/build/vignette.rds |binary quickPlot-0.1.3/quickPlot/inst/doc/iii-plotting.R | 343 quickPlot-0.1.3/quickPlot/inst/doc/iii-plotting.Rmd | 942 - quickPlot-0.1.3/quickPlot/inst/doc/iii-plotting.html | 868 - quickPlot-0.1.3/quickPlot/inst/examples/example_Plot.R | 202 quickPlot-0.1.3/quickPlot/inst/examples/example_makeLines.R | 52 quickPlot-0.1.3/quickPlot/inst/examples/example_setColors.R | 112 quickPlot-0.1.3/quickPlot/man/Plot-internal.Rd | 248 quickPlot-0.1.3/quickPlot/man/Plot.Rd | 730 - quickPlot-0.1.3/quickPlot/man/arrangeViewports.Rd | 58 quickPlot-0.1.3/quickPlot/man/arrangement-class.Rd | 146 quickPlot-0.1.3/quickPlot/man/assignQuickPlot.Rd | 72 quickPlot-0.1.3/quickPlot/man/clearPlot.Rd | 298 quickPlot-0.1.3/quickPlot/man/dev.Rd | 78 quickPlot-0.1.3/quickPlot/man/divergentColors.Rd | 106 quickPlot-0.1.3/quickPlot/man/equalExtent.Rd | 70 quickPlot-0.1.3/quickPlot/man/existsQuickPlot.Rd | 52 quickPlot-0.1.3/quickPlot/man/getQuickPlot.Rd | 48 quickPlot-0.1.3/quickPlot/man/getSetColors.Rd | 270 quickPlot-0.1.3/quickPlot/man/grid-functions.Rd | 44 quickPlot-0.1.3/quickPlot/man/griddedClasses-class.Rd | 52 quickPlot-0.1.3/quickPlot/man/hasBbox.Rd | 40 quickPlot-0.1.3/quickPlot/man/identifyGrobToPlot.Rd | 72 quickPlot-0.1.3/quickPlot/man/layerNames.Rd | 150 quickPlot-0.1.3/quickPlot/man/makeColorMatrix.Rd | 106 quickPlot-0.1.3/quickPlot/man/makeLayout.Rd | 64 quickPlot-0.1.3/quickPlot/man/makeLines.Rd | 114 quickPlot-0.1.3/quickPlot/man/makeList.Rd | 56 quickPlot-0.1.3/quickPlot/man/makeQuickPlot.Rd | 88 quickPlot-0.1.3/quickPlot/man/makeViewports.Rd | 54 quickPlot-0.1.3/quickPlot/man/newPlot.Rd | 96 quickPlot-0.1.3/quickPlot/man/numLayers.Rd | 110 quickPlot-0.1.3/quickPlot/man/objectNames.Rd | 62 quickPlot-0.1.3/quickPlot/man/parOrig.Rd | 18 quickPlot-0.1.3/quickPlot/man/parseArgs.Rd | 56 quickPlot-0.1.3/quickPlot/man/parseElems.Rd | 58 quickPlot-0.1.3/quickPlot/man/plotGrob.Rd | 220 quickPlot-0.1.3/quickPlot/man/prepareRaster.Rd | 68 quickPlot-0.1.3/quickPlot/man/quickPlot-class.Rd | 98 quickPlot-0.1.3/quickPlot/man/quickPlot-classes.Rd | 68 quickPlot-0.1.3/quickPlot/man/quickPlot-package.Rd | 80 quickPlot-0.1.3/quickPlot/man/quickPlotEnv.Rd | 28 quickPlot-0.1.3/quickPlot/man/quickPlotGrob-class.Rd | 100 quickPlot-0.1.3/quickPlot/man/quickPlotMouseClicks.Rd | 172 quickPlot-0.1.3/quickPlot/man/quickPlotObjects-class.Rd | 38 quickPlot-0.1.3/quickPlot/man/quickPlottables-class.Rd | 40 quickPlot-0.1.3/quickPlot/man/sample-maps.Rd | 54 quickPlot-0.1.3/quickPlot/man/sp2sl.Rd | 64 quickPlot-0.1.3/quickPlot/man/spatialObjects-class.Rd | 60 quickPlot-0.1.3/quickPlot/man/unittrim.Rd | 42 quickPlot-0.1.3/quickPlot/man/updateQuickPlot.Rd | 62 quickPlot-0.1.3/quickPlot/man/whereInStack.Rd |only quickPlot-0.1.3/quickPlot/tests/test-all.R | 4 quickPlot-0.1.3/quickPlot/tests/testthat/test-Plot-nonVisual.R | 120 quickPlot-0.1.3/quickPlot/tests/testthat/test-Plot.R | 2109 ++-- quickPlot-0.1.3/quickPlot/tests/testthat/test-examples.R | 24 quickPlot-0.1.3/quickPlot/tests/testthat/test-spelling.R | 58 quickPlot-0.1.3/quickPlot/vignettes/iii-plotting.Rmd | 942 - 74 files changed, 10376 insertions(+), 10225 deletions(-)
Title: Tools for Quantitative Risk Management
Description: Functions and data sets for reproducing selected results from
the book "Quantitative Risk Management: Concepts, Techniques and Tools".
Furthermore, new developments and auxiliary functions for Quantitative
Risk Management practice.
Author: Marius Hofert [aut, cre],
Kurt Hornik [aut],
Alexander J. McNeil [aut]
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between qrmtools versions 0.0-7 dated 2017-06-16 and 0.0-8 dated 2018-01-25
DESCRIPTION | 12 MD5 | 34 +- NAMESPACE | 5 R/VaR_ES_bounds.R | 2 R/nested_matrix.R |only R/returns.R | 1 build/vignette.rds |binary inst/doc/ARMA_GARCH_VaR.R | 8 inst/doc/ARMA_GARCH_VaR.Rmd | 8 inst/doc/ARMA_GARCH_VaR.html | 94 ++--- inst/doc/VaR_bounds.R | 22 - inst/doc/VaR_bounds.Rmd | 22 - inst/doc/VaR_bounds.html | 545 ++++++++++++++++------------------ inst/doc/geometric_risk_measures.html | 68 ++-- man/VaR_ES_bounds.Rd | 14 man/nested_matrix.Rd |only man/returns.Rd | 9 vignettes/ARMA_GARCH_VaR.Rmd | 8 vignettes/VaR_bounds.Rmd | 22 - 19 files changed, 443 insertions(+), 431 deletions(-)
Title: FDR Power
Description: This is a package for calculating power and sample size
in multiple testing situations using the Benjamini-Hochberg (BH)
false discovery rate (FDR) procedure. The package computes power
and sample size in one of either two ways, using the average
power or the lambda-power. See Izmirlian, G. (2018) <arXiv:1801.03989>.
Author: Grant Izmirlian Jr <izmirlig@mail.nih.gov>
Maintainer: Grant Izmirlian Jr <izmirlig@mail.nih.gov>
Diff between pwrFDR versions 1.80 dated 2018-01-17 and 1.85 dated 2018-01-25
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/pwrFDR.R | 2 ++ man/Ch01-pwrFDR.Rd | 36 ++++++++++++++++++------------------ 4 files changed, 26 insertions(+), 24 deletions(-)
Title: p-Value Aggregation Methods
Description: Contains functionality for performing the following methods of p-value aggregation: Fisher's method [Fisher, RA (1932, ISBN: 9780028447308)], the Lancaster method (weighted Fisher's method) [Lancaster, HO (1961, <doi:10.1111/j.1467-842X.1961.tb00058.x>)], and Sidak correction [Sidak, Z (1967, <doi:10.1080/01621459.1967.10482935>)]. Please cite Yi et al., the manuscript corresponding to this package [Yi, L et al., (2017), <doi:10.1101/190199>].
Author: Lynn Yi, Lior Pachter
Maintainer: Lynn Yi <lynnyi@caltech.edu>
Diff between aggregation versions 1.0 dated 2017-12-03 and 1.0.1 dated 2018-01-25
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-16 0.1.8
2017-03-26 0.1.7
2016-08-02 0.1.5
2016-02-20 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-28 0.2.2
2017-01-22 0.2.1
2015-12-22 0.2.0
Title: Utility Functions to Execute Standard Extract/Transform/Load
Operations (using Package 'ff') on Large Data
Description: Provides functions to facilitate the use of the 'ff' package
in interaction with big data in 'SQL' databases (e.g. in 'Oracle', 'MySQL',
'PostgreSQL', 'Hive') by allowing easy importing directly into 'ffdf' objects
using 'DBI', 'RODBC' and 'RJDBC'. Also contains some basic utility functions to
do fast left outer join merging based on 'match', factorisation of data and a
basic function for re-coding vectors.
Author: Jan Wijffels
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between ETLUtils versions 1.4 dated 2018-01-17 and 1.4.1 dated 2018-01-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 3 +++ R/ffsql.R | 10 ++++++---- man/write.dbi.ffdf.Rd | 10 ++++++---- 5 files changed, 23 insertions(+), 16 deletions(-)
Title: Genome Interval Arithmetic in R
Description: Read and manipulate genome intervals and signals. Provides
functionality similar to command-line tool suites within R,
enabling interactive analysis and visualization of genome-scale data.
Author: Jay Hesselberth <https://orcid.org/0000-0002-6299-179X> [aut, cre],
Kent Riemondy <https://orcid.org/0000-0003-0750-1273> [aut]
Maintainer: Jay Hesselberth <jay.hesselberth@gmail.com>
Diff between valr versions 0.3.1 dated 2017-07-21 and 0.4.0 dated 2018-01-25
valr-0.3.1/valr/inst/include/dplyr/DataFrameAble.h |only valr-0.3.1/valr/inst/include/dplyr/DataFrameVisitorsIndexSet.h |only valr-0.3.1/valr/inst/include/dplyr/Result/DelayedReducer.h |only valr-0.3.1/valr/inst/include/dplyr/Result/Everything.h |only valr-0.3.1/valr/inst/include/dplyr/Result/ResultSet.h |only valr-0.3.1/valr/inst/include/dplyr/Result/factories.h |only valr-0.3.1/valr/inst/include/dplyr/Result/max.h |only valr-0.3.1/valr/inst/include/dplyr/Result/min.h |only valr-0.3.1/valr/inst/include/dplyr/check_supported_type.h |only valr-0.3.1/valr/inst/include/dplyr/comparisons_different.h |only valr-0.3.1/valr/inst/include/dplyr/visitor_set/VisitorSetGreaterPredicate.h |only valr-0.3.1/valr/inst/include/dplyr/visitor_set/VisitorSetLessPredicate.h |only valr-0.3.1/valr/inst/include/tools/DotsOf.h |only valr-0.3.1/valr/inst/include/tools/Encoding.h |only valr-0.3.1/valr/inst/include/tools/FilteredListOf.h |only valr-0.3.1/valr/inst/include/tools/LazyDots.h |only valr-0.3.1/valr/inst/include/tools/StringUTF8.h |only valr-0.3.1/valr/inst/include/tools/complex.h |only valr-0.3.1/valr/inst/include/tools/delete_all.h |only valr-0.3.1/valr/inst/include/tools/get_all_second.h |only valr-0.3.1/valr/inst/include/tools/get_single_class.h |only valr-0.4.0/valr/DESCRIPTION | 20 valr-0.4.0/valr/MD5 | 431 ++-- valr-0.4.0/valr/NAMESPACE | 1 valr-0.4.0/valr/NEWS.md | 26 valr-0.4.0/valr/R/RcppExports.R | 8 valr-0.4.0/valr/R/bed12_to_exons.r | 4 valr-0.4.0/valr/R/bed_absdist.r | 7 valr-0.4.0/valr/R/bed_closest.r | 5 valr-0.4.0/valr/R/bed_cluster.r | 6 valr-0.4.0/valr/R/bed_complement.r | 1 valr-0.4.0/valr/R/bed_coverage.R | 1 valr-0.4.0/valr/R/bed_fisher.r | 20 valr-0.4.0/valr/R/bed_flank.r | 16 valr-0.4.0/valr/R/bed_glyph.r | 51 valr-0.4.0/valr/R/bed_intersect.r | 27 valr-0.4.0/valr/R/bed_jaccard.r | 80 valr-0.4.0/valr/R/bed_makewindows.r | 49 valr-0.4.0/valr/R/bed_map.r | 150 - valr-0.4.0/valr/R/bed_merge.r | 41 valr-0.4.0/valr/R/bed_projection.r | 90 valr-0.4.0/valr/R/bed_random.r | 6 valr-0.4.0/valr/R/bed_reldist.r | 11 valr-0.4.0/valr/R/bed_shift.r | 55 valr-0.4.0/valr/R/bed_shuffle.r | 16 valr-0.4.0/valr/R/bed_slop.r | 93 valr-0.4.0/valr/R/bed_sort.r | 60 valr-0.4.0/valr/R/bed_subtract.r | 7 valr-0.4.0/valr/R/bed_window.r | 13 valr-0.4.0/valr/R/features.r | 35 valr-0.4.0/valr/R/globals.r | 42 valr-0.4.0/valr/R/read_bed.r | 17 valr-0.4.0/valr/R/read_genome.r | 26 valr-0.4.0/valr/R/read_vcf.r | 17 valr-0.4.0/valr/R/spacing.r | 11 valr-0.4.0/valr/R/strands.r | 6 valr-0.4.0/valr/R/tbls.r | 30 valr-0.4.0/valr/R/utils.r | 6 valr-0.4.0/valr/R/valr-package.r | 2 valr-0.4.0/valr/README.md | 26 valr-0.4.0/valr/build/vignette.rds |binary valr-0.4.0/valr/inst/doc/valr.R | 2 valr-0.4.0/valr/inst/doc/valr.Rmd | 2 valr-0.4.0/valr/inst/doc/valr.html | 134 - valr-0.4.0/valr/inst/example |only valr-0.4.0/valr/inst/extdata/bug254_e.bed |only valr-0.4.0/valr/inst/include/dplyr.h | 202 -- valr-0.4.0/valr/inst/include/dplyr/BoolResult.h | 78 valr-0.4.0/valr/inst/include/dplyr/CharacterVectorOrderer.h | 24 valr-0.4.0/valr/inst/include/dplyr/Collecter.h | 989 ++++++---- valr-0.4.0/valr/inst/include/dplyr/Column.h |only valr-0.4.0/valr/inst/include/dplyr/DataFrameColumnSubsetVisitor.h | 86 valr-0.4.0/valr/inst/include/dplyr/DataFrameColumnVisitor.h | 86 valr-0.4.0/valr/inst/include/dplyr/DataFrameJoinVisitors.h | 127 - valr-0.4.0/valr/inst/include/dplyr/DataFrameSubsetVisitors.h | 218 +- valr-0.4.0/valr/inst/include/dplyr/DataFrameVisitors.h | 57 valr-0.4.0/valr/inst/include/dplyr/DataFrameVisitorsIndexMap.h | 5 valr-0.4.0/valr/inst/include/dplyr/EmptySubset.h | 7 valr-0.4.0/valr/inst/include/dplyr/FullDataFrame.h | 34 valr-0.4.0/valr/inst/include/dplyr/Gatherer.h | 579 ++--- valr-0.4.0/valr/inst/include/dplyr/GroupedDataFrame.h | 277 +- valr-0.4.0/valr/inst/include/dplyr/Groups.h |only valr-0.4.0/valr/inst/include/dplyr/Hybrid.h |only valr-0.4.0/valr/inst/include/dplyr/HybridHandler.h |only valr-0.4.0/valr/inst/include/dplyr/HybridHandlerMap.h |only valr-0.4.0/valr/inst/include/dplyr/JoinVisitor.h | 25 valr-0.4.0/valr/inst/include/dplyr/JoinVisitorImpl.h | 734 ++----- valr-0.4.0/valr/inst/include/dplyr/MatrixColumnSubsetVectorVisitor.h | 166 - valr-0.4.0/valr/inst/include/dplyr/MatrixColumnVisitor.h | 226 +- valr-0.4.0/valr/inst/include/dplyr/MultipleVectorVisitors.h | 97 valr-0.4.0/valr/inst/include/dplyr/NamedListAccumulator.h | 89 valr-0.4.0/valr/inst/include/dplyr/Order.h | 137 - valr-0.4.0/valr/inst/include/dplyr/OrderVisitor.h | 14 valr-0.4.0/valr/inst/include/dplyr/OrderVisitorImpl.h | 496 ++--- valr-0.4.0/valr/inst/include/dplyr/Replicator.h | 97 valr-0.4.0/valr/inst/include/dplyr/Result/CallElementProxy.h | 26 valr-0.4.0/valr/inst/include/dplyr/Result/CallProxy.h | 66 valr-0.4.0/valr/inst/include/dplyr/Result/CallbackProcessor.h | 194 + valr-0.4.0/valr/inst/include/dplyr/Result/ConstantResult.h | 202 +- valr-0.4.0/valr/inst/include/dplyr/Result/Count.h | 20 valr-0.4.0/valr/inst/include/dplyr/Result/Count_Distinct.h | 112 - valr-0.4.0/valr/inst/include/dplyr/Result/CumMax.h | 66 valr-0.4.0/valr/inst/include/dplyr/Result/CumMin.h | 66 valr-0.4.0/valr/inst/include/dplyr/Result/CumSum.h | 82 valr-0.4.0/valr/inst/include/dplyr/Result/DelayedProcessor.h | 517 ++--- valr-0.4.0/valr/inst/include/dplyr/Result/GroupedCallProxy.h | 288 -- valr-0.4.0/valr/inst/include/dplyr/Result/GroupedCallReducer.h | 45 valr-0.4.0/valr/inst/include/dplyr/Result/GroupedHybridCall.h | 339 ++- valr-0.4.0/valr/inst/include/dplyr/Result/GroupedSubset.h | 254 +- valr-0.4.0/valr/inst/include/dplyr/Result/GroupedSubsetBase.h |only valr-0.4.0/valr/inst/include/dplyr/Result/ILazySubsets.h |only valr-0.4.0/valr/inst/include/dplyr/Result/In.h | 59 valr-0.4.0/valr/inst/include/dplyr/Result/Lag.h | 164 - valr-0.4.0/valr/inst/include/dplyr/Result/LazyGroupedSubsets.h | 214 +- valr-0.4.0/valr/inst/include/dplyr/Result/LazyRowwiseSubsets.h | 88 valr-0.4.0/valr/inst/include/dplyr/Result/LazySubsets.h | 136 - valr-0.4.0/valr/inst/include/dplyr/Result/Lead.h | 168 - valr-0.4.0/valr/inst/include/dplyr/Result/Mean.h | 204 +- valr-0.4.0/valr/inst/include/dplyr/Result/MinMax.h |only valr-0.4.0/valr/inst/include/dplyr/Result/Mutater.h | 84 valr-0.4.0/valr/inst/include/dplyr/Result/Processor.h | 199 +- valr-0.4.0/valr/inst/include/dplyr/Result/Rank.h | 792 ++++---- valr-0.4.0/valr/inst/include/dplyr/Result/Result.h | 27 valr-0.4.0/valr/inst/include/dplyr/Result/RowwiseSubset.h | 158 - valr-0.4.0/valr/inst/include/dplyr/Result/Sd.h | 38 valr-0.4.0/valr/inst/include/dplyr/Result/Sum.h | 178 - valr-0.4.0/valr/inst/include/dplyr/Result/Var.h | 158 - valr-0.4.0/valr/inst/include/dplyr/Result/VectorSliceVisitor.h | 60 valr-0.4.0/valr/inst/include/dplyr/Result/all.h | 14 valr-0.4.0/valr/inst/include/dplyr/Result/is_smaller.h | 16 valr-0.4.0/valr/inst/include/dplyr/RowwiseDataFrame.h | 164 - valr-0.4.0/valr/inst/include/dplyr/SubsetVectorVisitor.h | 60 valr-0.4.0/valr/inst/include/dplyr/SubsetVectorVisitorImpl.h | 454 ++-- valr-0.4.0/valr/inst/include/dplyr/SummarisedVariable.h | 18 valr-0.4.0/valr/inst/include/dplyr/VectorVisitor.h | 47 valr-0.4.0/valr/inst/include/dplyr/VectorVisitorImpl.h | 366 +-- valr-0.4.0/valr/inst/include/dplyr/bad.h |only valr-0.4.0/valr/inst/include/dplyr/checks.h |only valr-0.4.0/valr/inst/include/dplyr/comparisons.h | 239 +- valr-0.4.0/valr/inst/include/dplyr/dplyr.h |only valr-0.4.0/valr/inst/include/dplyr/get_column.h |only valr-0.4.0/valr/inst/include/dplyr/join_match.h |only valr-0.4.0/valr/inst/include/dplyr/main.h |only valr-0.4.0/valr/inst/include/dplyr/registration.h | 35 valr-0.4.0/valr/inst/include/dplyr/subset_visitor.h | 62 valr-0.4.0/valr/inst/include/dplyr/subset_visitor_impl.h |only valr-0.4.0/valr/inst/include/dplyr/tbl_cpp.h | 40 valr-0.4.0/valr/inst/include/dplyr/train.h | 92 valr-0.4.0/valr/inst/include/dplyr/vector_class.h | 52 valr-0.4.0/valr/inst/include/dplyr/visitor.h | 59 valr-0.4.0/valr/inst/include/dplyr/visitor_impl.h |only valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorEqualPredicate.h | 22 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorHash.h | 22 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorSetEqual.h | 36 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorSetEqualPredicate.h | 28 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorSetGreater.h | 30 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorSetHash.h | 36 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorSetHasher.h | 28 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorSetIndexMap.h | 51 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorSetIndexSet.h | 41 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorSetLess.h | 30 valr-0.4.0/valr/inst/include/dplyr/visitor_set/VisitorSetMixin.h |only valr-0.4.0/valr/inst/include/dplyr/visitor_set/visitor_set.h | 13 valr-0.4.0/valr/inst/include/dplyr/white_list.h | 46 valr-0.4.0/valr/inst/include/dplyr/workarounds.h | 4 valr-0.4.0/valr/inst/include/dplyr/workarounds/static_assert.h | 4 valr-0.4.0/valr/inst/include/dplyr/workarounds/xlen.h |only valr-0.4.0/valr/inst/include/dplyr_RcppExports.h |only valr-0.4.0/valr/inst/include/dplyr_types.h |only valr-0.4.0/valr/inst/include/group_apply.h | 8 valr-0.4.0/valr/inst/include/intervals.h | 2 valr-0.4.0/valr/inst/include/solaris/solaris.h | 16 valr-0.4.0/valr/inst/include/tools/Call.h | 82 valr-0.4.0/valr/inst/include/tools/Quosure.h |only valr-0.4.0/valr/inst/include/tools/ShrinkableVector.h | 91 valr-0.4.0/valr/inst/include/tools/SlicingIndex.h | 134 + valr-0.4.0/valr/inst/include/tools/SymbolMap.h | 222 +- valr-0.4.0/valr/inst/include/tools/SymbolString.h |only valr-0.4.0/valr/inst/include/tools/SymbolVector.h |only valr-0.4.0/valr/inst/include/tools/all_na.h | 12 valr-0.4.0/valr/inst/include/tools/collapse.h | 38 valr-0.4.0/valr/inst/include/tools/debug.h |only valr-0.4.0/valr/inst/include/tools/encoding.h |only valr-0.4.0/valr/inst/include/tools/hash.h | 30 valr-0.4.0/valr/inst/include/tools/match.h | 27 valr-0.4.0/valr/inst/include/tools/pointer_vector.h | 75 valr-0.4.0/valr/inst/include/tools/rlang-export.h |only valr-0.4.0/valr/inst/include/tools/scalar_type.h |only valr-0.4.0/valr/inst/include/tools/tools.h | 19 valr-0.4.0/valr/inst/include/tools/utils.h |only valr-0.4.0/valr/inst/include/tools/wrap_subset.h | 31 valr-0.4.0/valr/man/bed_jaccard.Rd | 17 valr-0.4.0/valr/man/bed_makewindows.Rd | 23 valr-0.4.0/valr/man/bed_map.Rd | 61 valr-0.4.0/valr/man/bed_sort.Rd | 34 valr-0.4.0/valr/man/figures/README-intersect_glyph-1.png |binary valr-0.4.0/valr/man/interval_spacing.Rd | 4 valr-0.4.0/valr/src/RcppExports.cpp | 15 valr-0.4.0/valr/src/bed12toexons.cpp | 5 valr-0.4.0/valr/src/closest.cpp | 10 valr-0.4.0/valr/src/complement.cpp | 2 valr-0.4.0/valr/src/coverage.cpp | 4 valr-0.4.0/valr/src/dist.cpp | 12 valr-0.4.0/valr/src/flank.cpp | 2 valr-0.4.0/valr/src/init.c | 28 valr-0.4.0/valr/src/intersect.cpp | 63 valr-0.4.0/valr/src/makewindows.cpp | 37 valr-0.4.0/valr/src/merge.cpp | 6 valr-0.4.0/valr/src/random.cpp | 8 valr-0.4.0/valr/src/subtract.cpp | 6 valr-0.4.0/valr/tests/testthat/helper-astyle.r | 1 valr-0.4.0/valr/tests/testthat/test-db.r | 2 valr-0.4.0/valr/tests/testthat/test_absdist.r | 62 valr-0.4.0/valr/tests/testthat/test_closest.r | 468 ++-- valr-0.4.0/valr/tests/testthat/test_cluster.r | 42 valr-0.4.0/valr/tests/testthat/test_complement.r | 194 + valr-0.4.0/valr/tests/testthat/test_coverage.r | 202 +- valr-0.4.0/valr/tests/testthat/test_features.r | 18 valr-0.4.0/valr/tests/testthat/test_fisher.r | 16 valr-0.4.0/valr/tests/testthat/test_flank.r | 73 valr-0.4.0/valr/tests/testthat/test_genome.r | 22 valr-0.4.0/valr/tests/testthat/test_glyph.r | 24 valr-0.4.0/valr/tests/testthat/test_intersect.r | 276 +- valr-0.4.0/valr/tests/testthat/test_jaccard.r | 63 valr-0.4.0/valr/tests/testthat/test_makewindows.r | 61 valr-0.4.0/valr/tests/testthat/test_map.r | 157 + valr-0.4.0/valr/tests/testthat/test_merge.r | 153 - valr-0.4.0/valr/tests/testthat/test_projection.r | 86 valr-0.4.0/valr/tests/testthat/test_random.r | 5 valr-0.4.0/valr/tests/testthat/test_read_vcf.r | 6 valr-0.4.0/valr/tests/testthat/test_reldist.r | 169 + valr-0.4.0/valr/tests/testthat/test_shift.r | 154 + valr-0.4.0/valr/tests/testthat/test_shuffle.r | 91 valr-0.4.0/valr/tests/testthat/test_slop.r | 187 + valr-0.4.0/valr/tests/testthat/test_sort.r | 253 ++ valr-0.4.0/valr/tests/testthat/test_spacing.r | 45 valr-0.4.0/valr/tests/testthat/test_strands.r | 12 valr-0.4.0/valr/tests/testthat/test_subtract.r | 174 + valr-0.4.0/valr/tests/testthat/test_tbls.r | 78 valr-0.4.0/valr/tests/testthat/test_utils.r | 34 valr-0.4.0/valr/tests/testthat/test_window.r | 20 valr-0.4.0/valr/vignettes/valr.Rmd | 2 242 files changed, 9560 insertions(+), 8328 deletions(-)
Title: Parse Darwin Core Files
Description: Parse and create Darwin Core (<http://rs.tdwg.org/dwc/>) Simple
and Archives. Functionality includes reading and parsing all the
files in a Darwin Core Archive, including the datasets and metadata;
read and parse simple Darwin Core files; and validation of Darwin
Core Archives.
Author: Scott Chamberlain <https://orcid.org/0000-0003-1444-9135> [aut, cre]
Maintainer: Scott Chamberlain <myrmecocystus@gmail.com>
Diff between finch versions 0.1.0 dated 2016-12-23 and 0.2.0 dated 2018-01-25
DESCRIPTION | 28 ++++--- LICENSE | 2 MD5 | 41 ++++++----- NAMESPACE | 2 NEWS.md | 21 +++++ R/cache.R | 124 +++++++++-------------------------- R/defunct.R |only R/dwca.R | 42 +++++++---- R/dwca_validate.R | 18 +++-- R/on_load.R |only R/simple.R | 6 + README.md | 17 ++-- man/as.location.Rd | 1 man/dwca_cache.Rd | 75 ++++++++------------- man/dwca_cache_delete-defunct.Rd |only man/dwca_cache_delete_all-defunct.Rd |only man/dwca_cache_details-defunct.Rd |only man/dwca_cache_list-defunct.Rd |only man/dwca_read.Rd | 10 +- man/dwca_validate.Rd | 3 man/finch-defunct.Rd |only man/finch-package.Rd | 3 man/simple_read.Rd | 3 tests/testthat/helper-finch.R | 6 - tests/testthat/test-dwca_get.R | 18 +++-- 25 files changed, 199 insertions(+), 221 deletions(-)
Title: Testing 'DBI' Back Ends
Description: A helper that tests 'DBI' back ends for conformity
to the interface.
Author: Kirill Müller [aut, cre],
RStudio [cph],
R Consortium [fnd]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between DBItest versions 1.5-1 dated 2017-12-11 and 1.5-2 dated 2018-01-25
DESCRIPTION | 19 +++++++++++-------- MD5 | 12 ++++++------ NAMESPACE | 1 + NEWS.md | 6 ++++++ R/spec-getting-started.R | 3 ++- R/spec-result-roundtrip.R | 15 +++++++++++---- inst/doc/test.html | 4 ++-- 7 files changed, 39 insertions(+), 21 deletions(-)
Title: R Bayesian Evidence Synthesis Tools
Description: Tool-set to support Bayesian evidence synthesis.
This includes meta-analysis, (robust) prior derivation
from historical data, operating characteristics
and analysis (1 and 2 sample cases).
Author: Novartis Pharma AG [cph],
Sebastian Weber [aut, cre],
Beat Neuenschwander [ctb],
Heinz Schmidli [ctb],
Baldur Magnusson [ctb],
Yue Li [ctb],
Satrajit Roychoudhury [ctb],
Trustees of Columbia University [cph] (src/init.cpp, tools/make_cpp.R,
R/stanmodels.R)
Maintainer: Sebastian Weber <sebastian.weber@novartis.com>
Diff between RBesT versions 1.3-1 dated 2017-12-21 and 1.3-2 dated 2018-01-25
DESCRIPTION | 14 +++++++------- MD5 | 22 +++++++++++----------- R/RBesT-package.R | 4 ++-- R/integrate_logit_log.R | 2 +- R/mixdiff.R | 2 +- inst/NEWS | 9 +++++++++ inst/doc/RBesT.pdf |binary inst/doc/customizing_plots.html | 6 +++--- inst/doc/introduction.html | 6 +++--- inst/doc/introduction_normal.html | 6 +++--- inst/doc/robustMAP.html | 6 +++--- man/RBesT-package.Rd | 4 ++-- 12 files changed, 45 insertions(+), 36 deletions(-)
Title: Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Description: Fast functions for effective sample size, weighted multivariate mean and variance computation,
and weight diagnostic plot for generic importance sampling type results.
Author: Jouni Helske
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between diagis versions 0.1.3 dated 2017-07-27 and 0.1.3-1 dated 2018-01-25
diagis-0.1.3-1/diagis/DESCRIPTION | 8 ++++---- diagis-0.1.3-1/diagis/MD5 | 18 +++++++++--------- diagis-0.1.3-1/diagis/NEWS | 5 +++++ diagis-0.1.3-1/diagis/R/means.R | 14 +++++++++++--- diagis-0.1.3-1/diagis/R/ses.R | 4 ++-- diagis-0.1.3-1/diagis/R/vars.R | 9 +++++---- diagis-0.1.3-1/diagis/build/vignette.rds |binary diagis-0.1.3-1/diagis/inst/doc/diagis.pdf |only diagis-0.1.3-1/diagis/tests/testthat/test-mean.R | 6 +++--- diagis-0.1.3-1/diagis/vignettes/diagis.bib | 15 +++++++-------- diagis-0.1.3/diagis/inst/doc/diagis.html |only 11 files changed, 46 insertions(+), 33 deletions(-)
Title: Bayesian Neural Network for High-Dimensional Nonlinear Variable
Selection
Description: Perform Bayesian variable selection for high-dimensional nonlinear systems and also can be used to test nonlinearity for a general regression problem. The computation can be accelerated using multiple CPUs. You can refer to Liang, F., Li, Q. and Zhou, L. (2017) at <doi:10.1080/01621459.2017.1409122> for more detail.
Author: Bochao Jia [aut, cre, cph],
Faming Liang [ctb],
Robert Gentleman [cph],
Ross Ihaka [cph],
The R Core Team [cph]
Maintainer: Bochao Jia <jbc409@ufl.edu>
Diff between BNN versions 1.0.0 dated 2018-01-13 and 1.0.1 dated 2018-01-25
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- R/BNN.R | 5 +---- data/Topotecan.rda |binary man/BNN-package.Rd | 10 +++++----- man/BNNprior.Rd | 2 +- man/BNNsel.Rd | 17 ++++++++--------- man/Topotecan.Rd | 2 +- src/BNN.c | 10 ++++------ 9 files changed, 33 insertions(+), 39 deletions(-)
Title: AUC Maximization
Description: Implements methods for identifying linear and nonlinear marker combinations that maximizes the Area Under the AUC Curve (AUC).
Author: Youyi Fong [cre],
Krisztian Sebestyen [aut],
Shuxin Yin [aut],
Ying Huang [aut],
Alexandros Karatzoglou [ctb],
Alex Smola [ctb],
Kurt Hornik [ctb]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between aucm versions 2017.3-2 dated 2017-03-02 and 2018.1-24 dated 2018-01-25
DESCRIPTION | 15 +++++++++++---- MD5 | 10 +++++----- R/auc.R | 4 +--- R/roc.R | 5 +++-- man/roc.Rd | 15 ++++++++------- tests/doRUnit.R | 4 ++-- 6 files changed, 30 insertions(+), 23 deletions(-)
Title: Collect Data from the Census API
Description: Use the US Census API to collect summary data tables
for SF1 and ACS datasets at arbitrary geographies.
Author: Greg Macfarlane [cre, aut],
Josie Kressner [aut]
Maintainer: Greg Macfarlane <greg@transportfoundry.com>
Diff between censusr versions 0.0.3 dated 2017-06-14 and 0.0.4 dated 2018-01-25
DESCRIPTION | 10 +++++----- MD5 | 13 +++++++------ R/geolocator.R | 6 ++++++ R/zzz.R |only README.md | 5 +++++ build/vignette.rds |binary inst/doc/censusr.html | 4 ++-- man/append_geoid.Rd | 6 ++++++ 8 files changed, 31 insertions(+), 13 deletions(-)
Title: Regression Discontinuity Design Application
Description: Estimation of both single- and multiple-assignment Regression Discontinuity Designs
(RDDs). Provides both parametric (global) and non-parametric (local) estimation choices for
both sharp and fuzzy designs, along with power analysis and assumption checks.
Introductions to the underlying logic and analysis of RDDs are in
Thistlethwaite, D. L., Campbell, D. T. (1960) <doi:10.1037/h0044319> and
Lee, D. S., Lemieux, T. (2010) <doi:10.1257/jel.48.2.281>.
Author: Ze Jin [aut],
Wang Liao [aut],
Felix Thoemmes [aut, cre],
Drew Dimmery [ctb] (Implementation of functions in R package rdd),
Bastiaan Quast [ctb] (Implementation of functions in R package
rddtools),
Matthieu Stigler [ctb] (Implementation of functions in R package
rddtools)
Maintainer: Felix Thoemmes <fjt36@cornell.edu>
Diff between rddapp versions 0.1.0 dated 2017-12-12 and 1.0.0 dated 2018-01-25
DESCRIPTION | 15 MD5 | 174 +++-- NAMESPACE | 150 ++--- NEWS.md | 24 R/attr_check.R | 108 +-- R/bw_ik09.R | 232 +++---- R/bw_ik12.R | 314 +++++----- R/data.R | 40 - R/dc_test.R | 510 ++++++++--------- R/mfrd_est.R | 830 ++++++++++++++-------------- R/mrd_est.R | 630 ++++++++++----------- R/mrd_impute.R | 738 ++++++++++++------------- R/mrd_power.R | 548 +++++++++--------- R/mrd_sens_bw.R | 181 +++--- R/mrd_sens_cutoff.R | 238 ++++---- R/plot.mfrd.R | 298 +++++----- R/plot.rd.R | 776 +++++++++++++------------- R/predict.rd.R | 474 ++++++++-------- R/print.mfrd.R | 50 - R/print.rd.R | 50 - R/rd_est.R | 1016 +++++++++++++++++------------------ R/rd_impute.R | 338 +++++------ R/rd_power.R | 428 +++++++------- R/rd_sens_bw.R | 100 +-- R/rd_sens_cutoff.R | 114 +-- R/rd_type.R | 486 ++++++++-------- R/rddapp-package.R | 82 +- R/sens_plot.R | 230 ++++--- R/shiny_run.R |only R/summary.rd.R | 298 +++++----- R/treat_assign.R | 60 +- R/var_center.R | 138 ++-- R/wt_kern.R | 84 +- README.md | 96 +-- build/vignette.rds |binary inst/CITATION | 32 - inst/doc/rddapp.Rmd | 24 inst/doc/rddapp.html | 406 ++++++++----- inst/shinyrdd |only man/CARE.Rd | 58 - man/attr_check.Rd | 54 - man/bw_ik09.Rd | 72 +- man/bw_ik12.Rd | 72 +- man/dc_test.Rd | 140 ++-- man/mfrd_est.Rd | 126 ++-- man/mrd_est.Rd | 218 +++---- man/mrd_impute.Rd | 212 +++---- man/mrd_power.Rd | 214 +++---- man/mrd_sens_bw.Rd | 64 +- man/mrd_sens_cutoff.Rd | 62 +- man/plot.mfrd.Rd | 70 +- man/plot.rd.Rd | 114 +-- man/predict.rd.Rd | 52 - man/print.mfrd.Rd | 38 - man/print.rd.Rd | 38 - man/rd_est.Rd | 260 ++++---- man/rd_impute.Rd | 172 ++--- man/rd_power.Rd | 142 ++-- man/rd_sens_bw.Rd | 56 - man/rd_sens_cutoff.Rd | 60 +- man/rd_type.Rd | 70 +- man/rddapp-package.Rd | 96 +-- man/sens_plot.Rd | 76 +- man/shiny_run.Rd |only man/summary.rd.Rd | 48 - man/treat_assign.Rd | 56 - man/var_center.Rd | 62 +- man/wt_kern.Rd | 58 - tests/testthat.R | 22 tests/testthat/test-bw-ik-09.R | 242 ++++---- tests/testthat/test-bw-ik-12.R | 72 +- tests/testthat/test-dc-test.R | 154 ++--- tests/testthat/test-mfrd-est-sharp.R | 396 ++++++------- tests/testthat/test-mrd-est-fuzzy.R | 376 ++++++------ tests/testthat/test-mrd-est-sharp.R | 490 ++++++++-------- tests/testthat/test-predict-rd.R | 220 +++---- tests/testthat/test-rd-est-fuzzy.R | 318 +++++----- tests/testthat/test-rd-est-sharp.R | 316 +++++----- vignettes/rddapp.Rmd | 24 79 files changed, 7902 insertions(+), 7800 deletions(-)
Title: I/O Tools for Streaming
Description: Basic I/O tools for streaming and data parsing.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>, Taylor Arnold <taylor.arnold@acm.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between iotools versions 0.1-12 dated 2015-07-31 and 0.2-5 dated 2018-01-25
DESCRIPTION | 8 - MD5 | 25 ++- NAMESPACE | 4 R/chunk.R | 4 R/local.R | 44 +++++ R/output.R | 49 ++---- R/rbind.R |only man/chunk.Rd | 17 +- man/chunk.map.Rd |only man/fdrbind.Rd |only man/write.csv.raw.Rd | 2 src/as_output.c | 380 ++++++++++++++++++++++++++++----------------------- src/lnchunk.c | 60 ++++++-- src/rbind.c |only src/split.c | 1 src/stdio.c |only 16 files changed, 363 insertions(+), 231 deletions(-)
Title: Nonlinear Cointegrating Autoregressive Distributed Lag Model
Description: Computes the nonlinear cointegrating autoregressive distributed lag model with p lags of the dependent variables and q lags of independent variables proposed by (Shin, Yu & Greenwood-Nimmo, 2014 <doi:10.1007/978-1-4899-8008-3_9>).
Author: Taha Zaghdoudi
Maintainer: Taha Zaghdoudi <zedtaha@gmail.com>
Diff between nardl versions 0.1.0 dated 2017-07-08 and 0.1.1 dated 2018-01-25
nardl-0.1.0/nardl/R/modsel.R |only nardl-0.1.0/nardl/man/nardl.formula.Rd |only nardl-0.1.1/nardl/DESCRIPTION | 9 nardl-0.1.1/nardl/MD5 | 16 - nardl-0.1.1/nardl/NAMESPACE | 20 + nardl-0.1.1/nardl/R/boundstest.R | 2 nardl-0.1.1/nardl/R/nardl.R | 395 +++++++++++++++++++++++++-------- nardl-0.1.1/nardl/man/Nardl-package.Rd | 8 nardl-0.1.1/nardl/man/nardl.Rd | 21 + nardl-0.1.1/nardl/man/summary.nardl.Rd | 4 10 files changed, 350 insertions(+), 125 deletions(-)
Title: High Throughput Sequencing of Stable Isotope Probing Data
Analysis
Description: Functions for analyzing high throughput sequencing
stable isotope probing (HTS-SIP) data.
Analyses include high resolution stable isotope probing (HR-SIP),
multi-window high resolution stable isotope probing (MW-HR-SIP),
and quantitative stable isotope probing (q-SIP).
Author: Nicholas Youngblut [aut],
Samuel Barnett [cre, ctb]
Maintainer: Samuel Barnett <seb369@cornell.edu>
Diff between HTSSIP versions 1.3.1 dated 2018-01-11 and 1.3.2 dated 2018-01-25
DESCRIPTION | 16 ++++----- MD5 | 34 +++++++++---------- NEWS.md | 4 ++ README.md | 2 - inst/doc/BD_shifts.html | 54 +++++++++++++++---------------- inst/doc/HTSSIP_intro.html | 12 +++--- inst/doc/HTSSIP_sim.html | 16 ++++----- inst/doc/MW_HR_SIP.html | 20 +++++------ inst/doc/beta_diversity_ordinations.html | 14 ++++---- inst/doc/heavy_SIP.html | 12 +++--- inst/doc/qSIP.html | 14 ++++---- inst/doc/quant_incorp.html | 16 ++++----- tests/testthat/test-DESeq2_l2fc.R | 1 tests/testthat/test-Util.R | 2 - tests/testthat/test-delta_BD.R | 3 - tests/testthat/test-heavy_SIP.R | 5 -- tests/testthat/test-qSIP_atom_excess.R | 6 +-- tests/testthat/test-stringterpolate.R | 6 +-- 18 files changed, 116 insertions(+), 121 deletions(-)
Title: Mathematical Modeling of Infectious Disease Dynamics
Description: Tools for simulating mathematical models of infectious disease dynamics.
Epidemic model classes include deterministic compartmental models, stochastic
agent-based models, and stochastic network models. Network models use the
robust statistical methods of exponential-family random graph models (ERGMs)
from the Statnet suite of software packages in R. Standard templates for epidemic
modeling include SI, SIR, and SIS disease types. EpiModel features
an easy API for extending these templates to address novel scientific research aims.
Author: Samuel Jenness [cre, aut],
Steven M. Goodreau [aut],
Martina Morris [aut],
Emily Beylerian [ctb],
Skye Bender-deMoll [ctb],
Kevin Weiss [ctb]
Maintainer: Samuel Jenness <samuel.m.jenness@emory.edu>
Diff between EpiModel versions 1.6.0 dated 2018-01-24 and 1.6.1 dated 2018-01-25
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS | 8 ++++++++ R/EpiModel-package.r | 2 +- inst/doc/Intro.html | 4 ++-- man/EpiModel-package.Rd | 2 +- tests/testthat/test-netest.R | 4 ++-- tests/testthat/test-utils.R | 2 +- 8 files changed, 25 insertions(+), 17 deletions(-)
Title: Extra Functions to Cut, Label and Colour Dendrogram Clusters
Description: Provides extra functions to manipulate dendrograms
that build on the base functions provided by the 'stats' package. The main
functionality it is designed to add is the ability to colour all the edges
in an object of class 'dendrogram' according to cluster membership i.e. each
subtree is coloured, not just the terminal leaves. In addition it provides
some utility functions to cut 'dendrogram' and 'hclust' objects and to
set/get labels.
Author: Gregory Jefferis [aut, cre]
Maintainer: Gregory Jefferis <jefferis@gmail.com>
Diff between dendroextras versions 0.2.2 dated 2017-05-20 and 0.2.3 dated 2018-01-25
dendroextras-0.2.2/dendroextras/inst |only dendroextras-0.2.3/dendroextras/DESCRIPTION | 11 ++++++----- dendroextras-0.2.3/dendroextras/MD5 | 12 ++++++------ dendroextras-0.2.3/dendroextras/NEWS | 4 ++++ dendroextras-0.2.3/dendroextras/tests/test-all.R | 3 ++- dendroextras-0.2.3/dendroextras/tests/testthat |only 6 files changed, 18 insertions(+), 12 deletions(-)
Title: Rank Preserving Structural Failure Time Models
Description: Implements methods described by the paper Robins and Tsiatis (1991) <DOI:10.1080/03610929108830654>. These use g-estimation to estimate the causal effect of a treatment in a two-armed randomised control trial where non-compliance exists and is measured, under an assumption of an accelerated failure time model and no unmeasured confounders.
Author: Simon Bond [aut, cre] (primary author of code, secondary author of
vignette),
Annabel Allison [aut] (primary author of vignette, secondary author of
code)
Maintainer: Simon Bond <simon.bond@addenbrookes.nhs.uk>
Diff between rpsftm versions 1.2.1 dated 2017-10-27 and 1.2.2 dated 2018-01-25
DESCRIPTION | 8 MD5 | 100 - NAMESPACE | 44 NEWS.md | 121 - R/data.R | 42 R/est_eqn.R | 80 - R/extract_z.R | 118 - R/plot.rpsftm.R | 78 - R/print.rpsftm.R | 322 ++-- R/rand.R | 70 R/residuals.rpsftm.R | 32 R/rpsftm-package.R | 36 R/rpsftm.R | 694 ++++----- R/summary.rpsftm.R | 302 ++-- R/survfit.rpsftm.R | 46 R/terms.inner.R | 56 R/untreated.R | 96 - README.md | 92 - build/vignette.rds |binary inst/doc/rpsftm_vignette.R | 143 - inst/doc/rpsftm_vignette.Rmd | 589 +++---- inst/doc/rpsftm_vignette.html | 729 ++++----- man/est_eqn.Rd | 80 - man/extract_z.Rd | 90 - man/immdef.Rd | 60 man/plot.rpsftm.Rd | 78 - man/print.coxph.Rd | 38 man/print.rand.Rd | 50 man/print.rpsftm.Rd | 44 man/print.summary.coxph.Rd | 44 man/print.summary.survreg.Rd | 38 man/print.survreg.Rd | 34 man/rand.Rd | 66 man/residuals.rpsftm.Rd | 50 man/rpsftm-package.Rd | 50 man/rpsftm.Rd | 198 +- man/summary.rpsftm.Rd | 44 man/survfit.rpsftm.Rd | 50 man/terms.inner.Rd | 40 man/untreated.Rd | 70 tests/testthat.R | 8 tests/testthat/test_errors.R | 526 +++---- tests/testthat/test_rpsftm.R | 746 +++++----- vignettes/dev/adjustedHR.Rmd | 216 +- vignettes/dev/rpsftm_vignette_v1.Rmd | 574 +++---- vignettes/dev/rpsftm_vignette_v2.Rmd | 744 ++++----- vignettes/rpsftm_vignette.Rmd | 589 +++---- vignettes/rpsftm_vignette_files/figure-html/unnamed-chunk-12-1.png |binary vignettes/rpsftm_vignette_files/figure-html/unnamed-chunk-5-1.png |binary vignettes/rpsftm_vignette_files/figure-html/unnamed-chunk-7-1.png |binary vignettes/rpsftm_vignette_files/figure-html/unnamed-chunk-9-1.png |binary 51 files changed, 4172 insertions(+), 4153 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<http://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Arni Magnusson [aut, cre],
Colin Millar [aut]
Maintainer: Arni Magnusson <arni.magnusson@ices.dk>
Diff between icesTAF versions 1.4-1 dated 2017-12-05 and 1.5-0 dated 2018-01-25
DESCRIPTION | 8 ++--- MD5 | 78 +++++++++++++++++++++++++------------------------ NAMESPACE | 2 + NEWS | 15 +++++++++ R/catage.long.R | 4 +- R/catage.taf.R | 4 +- R/catage.xtab.R | 4 +- R/cp.R | 6 +-- R/flr2taf.R | 3 - R/icesTAF-package.R | 4 +- R/lim.R | 3 - R/long2taf.R | 3 - R/make.R | 55 +++++++++++++++++++++++++--------- R/makeAll.R |only R/makeTAF.R |only R/mkdir.R | 3 - R/read.taf.R | 3 - R/sourceAll.R | 38 +++++++++-------------- R/sourceTAF.R | 28 ++++++++--------- R/summary.taf.R | 4 +- R/taf.colors.R | 3 - R/taf.skeleton.R | 3 - R/taf2long.R | 3 - R/taf2xtab.R | 3 - R/tt.R | 3 - R/write.dls.R | 3 - R/xtab2taf.R | 3 - data/catage.long.rda |binary data/catage.taf.rda |binary data/catage.xtab.rda |binary data/summary.taf.rda |binary data/taf.colors.rda |binary man/catage.long.Rd | 4 +- man/catage.taf.Rd | 4 +- man/catage.xtab.Rd | 4 +- man/icesTAF-package.Rd | 4 +- man/make.Rd | 46 ++++++++++++++++++++++------ man/makeAll.Rd |only man/makeTAF.Rd |only man/sourceAll.Rd | 28 +++++------------ man/sourceTAF.Rd | 23 ++++++-------- man/summary.taf.Rd | 4 +- 42 files changed, 222 insertions(+), 181 deletions(-)
Title: Gradient Descent for Regression Tasks
Description: An implementation of various learning algorithms based on Gradient Descent for dealing with regression tasks.
The variants of gradient descent algorithm are :
Mini-Batch Gradient Descent (MBGD), which is an optimization to use training data partially to reduce the computation load.
Stochastic Gradient Descent (SGD), which is an optimization to use a random data in learning to reduce the computation load drastically.
Stochastic Average Gradient (SAG), which is a SGD-based algorithm to minimize stochastic step to average.
Momentum Gradient Descent (MGD), which is an optimization to speed-up gradient descent learning.
Accelerated Gradient Descent (AGD), which is an optimization to accelerate gradient descent learning.
Adagrad, which is a gradient-descent-based algorithm that accumulate previous cost to do adaptive learning.
Adadelta, which is a gradient-descent-based algorithm that use hessian approximation to do adaptive learning.
RMSprop, which is a gradient-descent-based algorithm that combine Adagrad and Adadelta adaptive learning ability.
Adam, which is a gradient-descent-based algorithm that mean and variance moment to do adaptive learning.
Stochastic Variance Reduce Gradient (SVRG), which is an optimization SGD-based algorithm to accelerates the process toward converging by reducing the gradient.
Semi Stochastic Gradient Descent (SSGD),which is a SGD-based algorithm that combine GD and SGD to accelerates the process toward converging by choosing one of the gradients at a time.
Stochastic Recursive Gradient Algorithm (SARAH), which is an optimization algorithm similarly SVRG to accelerates the process toward converging by accumulated stochastic information.
Stochastic Recursive Gradient Algorithm+ (SARAHPlus), which is a SARAH practical variant algorithm to accelerates the process toward converging provides a possibility of earlier termination.
Author: Galih Praja Wijaya, Dendi Handian, Imam Fachmi Nasrulloh, Lala Septem Riza, Rani Megasari, Enjun Junaeti
Maintainer: Lala Septem Riza <lala.s.riza@upi.edu>
Diff between gradDescent versions 2.0.1 dated 2017-03-12 and 3.0 dated 2018-01-25
DESCRIPTION | 14 LICENSE | 34 MD5 | 58 NAMESPACE | 49 R/docData.R | 60 R/gradDescentR.Methods.R | 2315 ++++++++++++++++++++++--------------- R/gradDescentR.SupportFunctions.R | 891 +++++++------- R/gradDescentR.TopLevelFunctions.R | 488 ++++--- man/ADADELTA.Rd | 119 - man/ADAGRAD.Rd | 113 - man/ADAM.Rd | 113 - man/AGD.Rd | 117 - man/GD.Rd | 125 - man/MBGD.Rd | 119 - man/MGD.Rd | 117 - man/RMSE.Rd | 107 - man/RMSPROP.Rd | 123 - man/SAGD.Rd | 119 - man/SARAH.Rd |only man/SARAHPlus.Rd |only man/SGD.Rd | 115 - man/SSGD.Rd |only man/SVRG.Rd |only man/gradDescentR.learn.Rd | 150 +- man/gradDescentRData.Rd | 32 man/minmaxDescaling.Rd | 95 - man/minmaxScaling.Rd | 85 - man/predict.gradDescentRObject.Rd | 108 + man/prediction.Rd | 136 +- man/splitData.Rd | 103 - man/varianceDescaling.Rd | 95 - man/varianceScaling.Rd | 85 - 32 files changed, 3355 insertions(+), 2730 deletions(-)
Title: Bayesian Inference of Non-Linear and Non-Gaussian State Space
Models
Description: Efficient methods for Bayesian inference of state space models
via particle Markov chain Monte Carlo and parallel importance sampling type weighted
Markov chain Monte Carlo (Vihola, Helske, and Franks, 2017, <arXiv:1609.02541>).
Gaussian, Poisson, binomial, or negative binomial
observation densities and basic stochastic volatility models with Gaussian state
dynamics, as well as general non-linear Gaussian models and discretised diffusion models
are supported.
Author: Jouni Helske, Matti Vihola
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between bssm versions 0.1.2 dated 2017-11-22 and 0.1.3 dated 2018-01-25
bssm-0.1.2/bssm/R/auxiliary_filter.R |only bssm-0.1.2/bssm/R/backwards_sampling.R |only bssm-0.1.2/bssm/inst/doc/bssm.pdf |only bssm-0.1.2/bssm/man/auxiliary_filter.Rd |only bssm-0.1.2/bssm/src/R_auxiliary_filter.cpp |only bssm-0.1.2/bssm/src/gg_abc.h |only bssm-0.1.2/bssm/src/invlink.cpp |only bssm-0.1.2/bssm/src/invlink.h |only bssm-0.1.2/bssm/src/mng_ssm.h |only bssm-0.1.2/bssm/src/mnn_abc.h |only bssm-0.1.2/bssm/src/unn_abc.h |only bssm-0.1.2/bssm/tests/testthat/bsf_reference |only bssm-0.1.2/bssm/tests/testthat/mcmc_reference |only bssm-0.1.2/bssm/tests/testthat/test_particle_filters.R |only bssm-0.1.2/bssm/vignettes/growth_model_functions.cpp |only bssm-0.1.2/bssm/vignettes/sde_functions.cpp |only bssm-0.1.3/bssm/DESCRIPTION | 15 bssm-0.1.3/bssm/MD5 | 209 +-- bssm-0.1.3/bssm/NAMESPACE | 8 bssm-0.1.3/bssm/NEWS | 11 bssm-0.1.3/bssm/R/RcppExports.R | 72 - bssm-0.1.3/bssm/R/approx.R | 46 bssm-0.1.3/bssm/R/check_arguments.R | 2 bssm-0.1.3/bssm/R/ekpf_filter.R | 3 bssm-0.1.3/bssm/R/kfilter.R | 7 bssm-0.1.3/bssm/R/loglik.R | 16 bssm-0.1.3/bssm/R/models.R | 261 +++- bssm-0.1.3/bssm/R/particle_smoother.R | 114 -- bssm-0.1.3/bssm/R/predict.R | 39 bssm-0.1.3/bssm/R/print_mcmc.R | 129 +- bssm-0.1.3/bssm/R/priors.R | 29 bssm-0.1.3/bssm/R/run_mcmc.R | 336 +++--- bssm-0.1.3/bssm/R/sim_smoother.R | 8 bssm-0.1.3/bssm/R/smoother.R | 31 bssm-0.1.3/bssm/build/vignette.rds |binary bssm-0.1.3/bssm/inst/CITATION | 7 bssm-0.1.3/bssm/inst/doc/bssm.R | 81 + bssm-0.1.3/bssm/inst/doc/bssm.Rmd | 401 ++++--- bssm-0.1.3/bssm/inst/doc/bssm.html |only bssm-0.1.3/bssm/inst/doc/growth_model.R | 4 bssm-0.1.3/bssm/inst/doc/growth_model.Rmd | 156 -- bssm-0.1.3/bssm/inst/doc/growth_model.pdf |binary bssm-0.1.3/bssm/man/ar1.Rd |only bssm-0.1.3/bssm/man/bsm.Rd | 6 bssm-0.1.3/bssm/man/ekpf_filter.Rd | 5 bssm-0.1.3/bssm/man/expand_sample.Rd | 5 bssm-0.1.3/bssm/man/gssm.Rd | 3 bssm-0.1.3/bssm/man/lgg_ssm.Rd | 30 bssm-0.1.3/bssm/man/logLik.Rd | 3 bssm-0.1.3/bssm/man/ng_ar1.Rd | 4 bssm-0.1.3/bssm/man/ng_bsm.Rd | 8 bssm-0.1.3/bssm/man/nlg_ssm.Rd | 2 bssm-0.1.3/bssm/man/particle_smoother.Rd | 27 bssm-0.1.3/bssm/man/predict.Rd | 8 bssm-0.1.3/bssm/man/print.mcmc_output.Rd | 5 bssm-0.1.3/bssm/man/run_mcmc_g.Rd | 20 bssm-0.1.3/bssm/man/run_mcmc_ng.Rd | 13 bssm-0.1.3/bssm/man/sde_ssm.Rd | 2 bssm-0.1.3/bssm/src/R_bootstrap_filter.cpp | 150 +- bssm-0.1.3/bssm/src/R_ekf.cpp | 6 bssm-0.1.3/bssm/src/R_ekpf.cpp | 30 bssm-0.1.3/bssm/src/R_kfilter.cpp | 6 bssm-0.1.3/bssm/src/R_loglik.cpp | 12 bssm-0.1.3/bssm/src/R_mcmc.cpp | 43 bssm-0.1.3/bssm/src/R_predict.cpp | 35 bssm-0.1.3/bssm/src/R_psi.cpp | 77 - bssm-0.1.3/bssm/src/R_sde.cpp | 77 - bssm-0.1.3/bssm/src/R_sde_state_sampler.cpp | 10 bssm-0.1.3/bssm/src/R_smoother.cpp | 26 bssm-0.1.3/bssm/src/RcppExports.cpp | 238 +--- bssm-0.1.3/bssm/src/interval.cpp | 35 bssm-0.1.3/bssm/src/lgg_ssm.cpp | 57 - bssm-0.1.3/bssm/src/lgg_ssm.h | 10 bssm-0.1.3/bssm/src/mcmc.cpp | 912 ++++++++--------- bssm-0.1.3/bssm/src/mcmc.h | 13 bssm-0.1.3/bssm/src/mgg_ssm.cpp | 288 +---- bssm-0.1.3/bssm/src/mgg_ssm.h | 37 bssm-0.1.3/bssm/src/ng_loglik.cpp | 12 bssm-0.1.3/bssm/src/nlg_amcmc.cpp | 45 bssm-0.1.3/bssm/src/nlg_amcmc.h | 3 bssm-0.1.3/bssm/src/nlg_ssm.cpp | 150 -- bssm-0.1.3/bssm/src/nlg_ssm.h | 4 bssm-0.1.3/bssm/src/running_summary.cpp | 13 bssm-0.1.3/bssm/src/sde_amcmc.cpp | 29 bssm-0.1.3/bssm/src/sde_amcmc.h | 2 bssm-0.1.3/bssm/src/sde_ssm.cpp | 70 - bssm-0.1.3/bssm/src/sde_ssm.h | 5 bssm-0.1.3/bssm/src/ugg_ar1.cpp |only bssm-0.1.3/bssm/src/ugg_ar1.h |only bssm-0.1.3/bssm/src/ugg_bsm.cpp | 80 - bssm-0.1.3/bssm/src/ugg_bsm.h | 6 bssm-0.1.3/bssm/src/ugg_ssm.cpp | 455 +------- bssm-0.1.3/bssm/src/ugg_ssm.h | 46 bssm-0.1.3/bssm/src/ung_amcmc.cpp | 63 - bssm-0.1.3/bssm/src/ung_amcmc.h | 3 bssm-0.1.3/bssm/src/ung_ar1.cpp | 59 - bssm-0.1.3/bssm/src/ung_ar1.h | 6 bssm-0.1.3/bssm/src/ung_bsm.cpp | 79 - bssm-0.1.3/bssm/src/ung_bsm.h | 8 bssm-0.1.3/bssm/src/ung_ssm.cpp | 211 ++- bssm-0.1.3/bssm/src/ung_ssm.h | 21 bssm-0.1.3/bssm/src/ung_svm.cpp | 58 - bssm-0.1.3/bssm/src/ung_svm.h | 6 bssm-0.1.3/bssm/tests/testthat/test_approx.R | 1 bssm-0.1.3/bssm/tests/testthat/test_bootstrap_filter.R | 42 bssm-0.1.3/bssm/tests/testthat/test_is.R | 12 bssm-0.1.3/bssm/tests/testthat/test_mcmc.R | 38 bssm-0.1.3/bssm/vignettes/bssm.Rmd | 401 ++++--- bssm-0.1.3/bssm/vignettes/bssm.bib | 110 ++ bssm-0.1.3/bssm/vignettes/growth_model.Rmd | 156 -- bssm-0.1.3/bssm/vignettes/lgg_ssm_template.cpp |only bssm-0.1.3/bssm/vignettes/nlg_ssm_template.cpp |only bssm-0.1.3/bssm/vignettes/sde_ssm_template.cpp |only bssm-0.1.3/bssm/vignettes/stan_ar1.stan |only 114 files changed, 2997 insertions(+), 3385 deletions(-)
Title: A Set of Tools that Enhance Reproducibility Beyond Package
Management
Description: Built on top of 'git2r' and 'archivist', this package aims at
making high-level, robust, machine and OS independent tools for making
deeply reproducible and reusable content in R. This includes light weight
package management (similar to 'packrat' and 'checkpoint', but more flexible,
lightweight and simpler than both), plus it includes
tools for caching, and accessing GitHub repositories.
Author: Eliot J B McIntire [aut, cre],
Alex M Chubaty [aut],
Her Majesty the Queen in Right of Canada, as represented by the
Minister of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between reproducible versions 0.1.3 dated 2017-08-10 and 0.1.4 dated 2018-01-25
reproducible-0.1.3/reproducible/inst/dict |only reproducible-0.1.4/reproducible/.aspell/defaults.R | 10 reproducible-0.1.4/reproducible/.aspell/reproducible.rds |only reproducible-0.1.4/reproducible/DESCRIPTION | 34 reproducible-0.1.4/reproducible/MD5 | 114 reproducible-0.1.4/reproducible/NAMESPACE | 242 - reproducible-0.1.4/reproducible/NEWS.md | 66 reproducible-0.1.4/reproducible/R/RcppExports.R |only reproducible-0.1.4/reproducible/R/cache-helpers.R | 1775 +++++----- reproducible-0.1.4/reproducible/R/cache-tools.R | 335 - reproducible-0.1.4/reproducible/R/cache.R | 1108 +++--- reproducible-0.1.4/reproducible/R/consistentPaths.R | 280 - reproducible-0.1.4/reproducible/R/git.R | 288 - reproducible-0.1.4/reproducible/R/helpers.R |only reproducible-0.1.4/reproducible/R/packages.R |only reproducible-0.1.4/reproducible/R/pipe.R |only reproducible-0.1.4/reproducible/R/reproducible-package.R | 20 reproducible-0.1.4/reproducible/R/robustDigest.R | 513 +- reproducible-0.1.4/reproducible/R/search.R |only reproducible-0.1.4/reproducible/README.md | 50 reproducible-0.1.4/reproducible/inst/examples/example_Cache.R | 249 - reproducible-0.1.4/reproducible/inst/examples/example_checkPath.R | 44 reproducible-0.1.4/reproducible/man/Copy.Rd | 148 reproducible-0.1.4/reproducible/man/Path-class.Rd | 98 reproducible-0.1.4/reproducible/man/Require.Rd |only reproducible-0.1.4/reproducible/man/addTagsToOutput.Rd | 64 reproducible-0.1.4/reproducible/man/available.packagesMem.Rd |only reproducible-0.1.4/reproducible/man/cache.Rd | 637 +-- reproducible-0.1.4/reproducible/man/cacheHelper.Rd | 63 reproducible-0.1.4/reproducible/man/cacheMessage.Rd | 57 reproducible-0.1.4/reproducible/man/checkCacheRepo.Rd | 59 reproducible-0.1.4/reproducible/man/checkGitConfig.Rd | 32 reproducible-0.1.4/reproducible/man/checkPath.Rd | 122 reproducible-0.1.4/reproducible/man/checkoutVersion.Rd | 128 reproducible-0.1.4/reproducible/man/clearStubArtifacts.Rd | 95 reproducible-0.1.4/reproducible/man/compareNA.Rd |only reproducible-0.1.4/reproducible/man/copyFile.Rd | 109 reproducible-0.1.4/reproducible/man/debugCache.Rd | 50 reproducible-0.1.4/reproducible/man/installPackages.Rd |only reproducible-0.1.4/reproducible/man/installVersions.Rd |only reproducible-0.1.4/reproducible/man/installedVersions.Rd |only reproducible-0.1.4/reproducible/man/newLibPaths.Rd |only reproducible-0.1.4/reproducible/man/normPath.Rd | 114 reproducible-0.1.4/reproducible/man/objSizeInclEnviros.Rd | 61 reproducible-0.1.4/reproducible/man/package_dependenciesMem.Rd |only reproducible-0.1.4/reproducible/man/pipe.Rd |only reproducible-0.1.4/reproducible/man/pipe2.Rd |only reproducible-0.1.4/reproducible/man/pkgDep.Rd |only reproducible-0.1.4/reproducible/man/pkgSnapshot.Rd |only reproducible-0.1.4/reproducible/man/preDigestByClass.Rd | 55 reproducible-0.1.4/reproducible/man/prepareFileBackedRaster.Rd | 85 reproducible-0.1.4/reproducible/man/prepareOutput.Rd | 83 reproducible-0.1.4/reproducible/man/readLinesRcpp.Rd |only reproducible-0.1.4/reproducible/man/readLinesRcppInternal.Rd |only reproducible-0.1.4/reproducible/man/reproducible-deprecated.Rd | 83 reproducible-0.1.4/reproducible/man/reproducible-package.Rd | 73 reproducible-0.1.4/reproducible/man/robustDigest.Rd | 302 - reproducible-0.1.4/reproducible/man/search.Rd |only reproducible-0.1.4/reproducible/man/sortDotsUnderscoreFirst.Rd | 66 reproducible-0.1.4/reproducible/man/tagsByClass.Rd | 52 reproducible-0.1.4/reproducible/man/viewCache.Rd | 522 +- reproducible-0.1.4/reproducible/src |only reproducible-0.1.4/reproducible/tests/test-all.R | 4 reproducible-0.1.4/reproducible/tests/testthat/test-cache.R | 884 +++- reproducible-0.1.4/reproducible/tests/testthat/test-cacheArguments.R | 130 reproducible-0.1.4/reproducible/tests/testthat/test-checkPath.R | 142 reproducible-0.1.4/reproducible/tests/testthat/test-copy.R | 178 - reproducible-0.1.4/reproducible/tests/testthat/test-examples.R | 24 reproducible-0.1.4/reproducible/tests/testthat/test-git.R | 118 reproducible-0.1.4/reproducible/tests/testthat/test-packages.R |only reproducible-0.1.4/reproducible/tests/testthat/test-spelling.R | 64 71 files changed, 5273 insertions(+), 4557 deletions(-)
Title: LaTeX Wrappers for R Users
Description: Provides the functionality to write LaTeX code from within R
without having to learn LaTeX. Functionality also exists to create HTML
and Markdown code. While the functionality still exists to write
complete documents with lazyWeave, it is generally easier to do so with
with markdown and knitr. lazyWeave's main strength now is the ability
to design custom and complex tables for reporting results.
Author: Benjamin Nutter [aut, cre]
Maintainer: Benjamin Nutter <benjamin.nutter@gmail.com>
Diff between lazyWeave versions 3.0.1 dated 2016-01-09 and 3.0.2 dated 2018-01-25
DESCRIPTION | 17 MD5 | 162 +++--- NAMESPACE | 82 +-- NEWS | 119 ++-- R/catconttable.R | 411 +++++++-------- R/cattable.R | 460 ++++++++--------- R/conttable.R | 395 +++++++------- R/is.significant.R | 74 +- R/lazy.build.R | 286 +++++----- R/lazy.citation.R | 116 ++-- R/lazy.counter.R | 276 +++++----- R/lazy.figure.R | 324 ++++++------ R/lazy.file.end.R | 44 - R/lazy.file.start.R | 262 ++++----- R/lazy.footnote.R | 154 ++--- R/lazy.insert.code.R | 80 +-- R/lazy.label.R | 54 +- R/lazy.landscape.R | 70 +- R/lazy.link.R | 118 ++-- R/lazy.list.R | 344 ++++++------- R/lazy.matrix.R | 282 +++++----- R/lazy.page.break.R | 68 +- R/lazy.page.number.R | 70 +- R/lazy.ref.R | 108 ++-- R/lazy.section.R | 352 ++++++------- R/lazy.table.R | 924 +++++++++++++++++------------------ R/lazy.text.R | 298 +++++------ R/lazy.text.format.R | 126 ++-- R/lazy.toc.R | 152 ++--- R/lazy.verbatim.end.R | 28 - R/lazy.verbatim.start.R | 78 +- R/lazy.write.R | 148 ++--- R/lazyWeave.R | 80 +-- R/mantel.test.R | 291 +++++------ R/map.size.R | 114 ++-- R/print.ctable.R | 242 ++++----- R/pvalString.R | 166 +++--- R/setHtmlOptions.R | 114 ++-- R/split_ctable.R | 56 +- R/univ.R | 348 ++++++------- R/write.ctable.r | 678 ++++++++++++------------- R/write.univ.R | 221 ++++---- R/zzz.R | 36 - README.md | 54 +- man/ComparisonTable.Rd | 397 +++++++-------- man/Delivery.rd | 68 +- man/Scout.rd | 48 - man/WritePrintCtable.Rd | 240 ++++----- man/is_significant.Rd | 76 +- man/lazy.build.Rd | 91 +-- man/lazy.citation.Rd | 85 +-- man/lazy.counter.Rd | 153 ++--- man/lazy.figure.Rd | 163 +++--- man/lazy.file.end.Rd | 36 - man/lazy.file.start.Rd | 157 ++--- man/lazy.footnote.Rd | 101 +-- man/lazy.insert.code.Rd | 71 +- man/lazy.landscape.Rd | 61 +- man/lazy.link.Rd | 68 +- man/lazy.list.Rd | 148 ++--- man/lazy.matrix.Rd | 174 +++--- man/lazy.page.break.Rd | 63 +- man/lazy.page.number.Rd | 58 +- man/lazy.ref.Rd | 78 +- man/lazy.section.Rd | 160 +++--- man/lazy.table.Rd | 366 ++++++------- man/lazy.text.Rd | 155 +++-- man/lazy.text.format.Rd | 94 +-- man/lazy.toc.Rd | 104 +-- man/lazy.verbatim.start.Rd | 72 +- man/lazy.write.Rd | 71 +- man/lazyWeave.Rd | 87 +-- man/mantel.test.Rd | 125 ++-- man/map.size.Rd | 81 +-- man/pvalString.Rd | 103 +-- man/setHtmlOptions.Rd | 121 ++-- man/univ.Rd | 187 +++---- man/write.univ.Rd | 227 ++++---- tests/testthat.R | 6 tests/testthat/test-is.significant.R | 28 - tests/testthat/test-lazy.citation.R | 48 - tests/testthat/test-lazy.counter.R | 4 82 files changed, 6634 insertions(+), 6623 deletions(-)
Title: Fitting Frailty Models with the EM Algorithm
Description: Contains functions for fitting shared frailty models with a semi-parametric
baseline hazard with the Expectation-Maximization algorithm. Supported data formats
include clustered failures with left truncation and recurrent events in gap-time
or Andersen-Gill format. Several frailty distributions, such as the the gamma, positive stable
and the Power Variance Family are supported.
Author: Theodor Adrian Balan, Hein Putter
Maintainer: Theodor Adrian Balan <t.a.balan@lumc.nl>
Diff between frailtyEM versions 0.7.9 dated 2017-10-24 and 0.8.1 dated 2018-01-25
frailtyEM-0.7.9/frailtyEM/src/inf_mat_match.cpp |only frailtyEM-0.8.1/frailtyEM/DESCRIPTION | 9 frailtyEM-0.8.1/frailtyEM/MD5 | 55 - frailtyEM-0.8.1/frailtyEM/NAMESPACE | 1 frailtyEM-0.8.1/frailtyEM/NEWS.md | 20 frailtyEM-0.8.1/frailtyEM/R/RcppExports.R | 12 frailtyEM-0.8.1/frailtyEM/R/autoplot.emfrail.R | 23 frailtyEM-0.8.1/frailtyEM/R/ca_test_cph.R | 5 frailtyEM-0.8.1/frailtyEM/R/em_fit.R | 424 +++++++-- frailtyEM-0.8.1/frailtyEM/R/emfrail.R | 682 +++++++++------- frailtyEM-0.8.1/frailtyEM/R/emfrail_arguments.R | 40 frailtyEM-0.8.1/frailtyEM/R/emfrail_aux.R | 53 + frailtyEM-0.8.1/frailtyEM/R/plot.emfrail.R | 6 frailtyEM-0.8.1/frailtyEM/R/predict.emfrail.R | 70 + frailtyEM-0.8.1/frailtyEM/R/print.emfrail.R | 8 frailtyEM-0.8.1/frailtyEM/R/print.emfrail_summary.R | 61 - frailtyEM-0.8.1/frailtyEM/R/summary.emfrail.R | 49 - frailtyEM-0.8.1/frailtyEM/README.md | 34 frailtyEM-0.8.1/frailtyEM/build/vignette.rds |binary frailtyEM-0.8.1/frailtyEM/inst/doc/frailtyEM_manual.pdf |binary frailtyEM-0.8.1/frailtyEM/man/autoplot.emfrail.Rd | 15 frailtyEM-0.8.1/frailtyEM/man/emfrail.Rd | 318 ++----- frailtyEM-0.8.1/frailtyEM/man/emfrail_control.Rd | 20 frailtyEM-0.8.1/frailtyEM/man/emfrail_pll.Rd | 52 + frailtyEM-0.8.1/frailtyEM/man/plot.emfrail.Rd | 10 frailtyEM-0.8.1/frailtyEM/man/predict.emfrail.Rd | 7 frailtyEM-0.8.1/frailtyEM/man/summary.emfrail.Rd | 6 frailtyEM-0.8.1/frailtyEM/src/RcppExports.cpp | 36 frailtyEM-0.8.1/frailtyEM/src/sumxxt.cpp | 107 ++ 29 files changed, 1338 insertions(+), 785 deletions(-)
Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie <https://orcid.org/0000-0003-0645-5666> [aut, cre],
JJ Allaire [ctb],
Albert Kim [ctb],
Alessandro Samuel-Rosa [ctb],
Andrzej Oles [ctb],
Bastiaan Quast [ctb],
Ben Marwick [ctb],
Chester Ismay [ctb],
Christophe Dervieux [ctb],
Daniel Emaasit [ctb],
David Shuman [ctb],
Dean Attali [ctb],
Drew Tyre [ctb],
Frans van Dunne [ctb],
Hadley Wickham [ctb],
Jeff Allen [ctb],
Jennifer Bryan [ctb],
Jonathan McPhers [ctb],
Junwen Huang [ctb],
Kevin Cheung [ctb],
Kevin Ushey [ctb],
Kim Seonghyun [ctb],
Kirill Muller [ctb],
Luciano Selzer [ctb],
Matthew Lincoln [ctb],
Maximilian Held [ctb],
Michael Sachs [ctb],
Michal Bojanowski [ctb],
Peter Hickey [ctb],
Sahir Bhatnagar [ctb],
Steve Simpson [ctb],
Vincent Fulco [ctb],
Yixuan Qiu [ctb],
Zhuoer Dong [ctb],
RStudio Inc [cph],
Bartek Szopka [ctb] (The jQuery Highlight plugin),
jQuery Foundation [cph] (jQuery library),
jQuery contributors [ctb, cph] (jQuery library; authors listed in
inst/resources/AUTHORS),
MathQuill contributors [ctb] (The MathQuill library; authors listed in
inst/resources/AUTHORS),
FriendCode Inc [cph, ctb] (The gitbook style, with modifications)
Maintainer: Yihui Xie <xie@yihui.name>
Diff between bookdown versions 0.5 dated 2017-08-20 and 0.6 dated 2018-01-25
DESCRIPTION | 13 - MD5 | 50 +++---- NAMESPACE | 6 NEWS.md | 14 ++ R/ebook.R | 12 - R/gitbook.R | 20 ++ R/html.R | 62 ++++++--- R/latex.R | 12 + R/render.R | 21 ++- R/skeleton.R | 6 R/utils.R | 68 ++-------- R/zzz.R | 3 README.md | 2 inst/resources/gitbook/css/fontawesome/fontawesome-webfont.ttf |binary inst/rstudio/templates/project/resources/06-references.Rmd | 4 inst/rstudio/templates/project/resources/_bookdown.yml | 1 inst/rstudio/templates/project/resources/_output.yml | 15 +- inst/rstudio/templates/project/resources/index.Rmd | 2 inst/scripts/render_one.R | 2 inst/templates/gitbook.html | 8 - man/gitbook.Rd | 14 +- man/html_chapters.Rd | 4 man/html_document2.Rd | 6 man/render_book.Rd | 4 tests/rmd |only tests/test-rmd.R |only 26 files changed, 200 insertions(+), 149 deletions(-)
Title: Lightning Fast Serialization of Data Frames for R
Description: Multithreaded serialization of compressed data frames using the
'fst' format. The 'fst' format allows for random access of stored data and
compression with the LZ4 and ZSTD compressors created by Yann Collet. The ZSTD
compression library is owned by Facebook Inc.
Author: Mark Klik [aut, cre, cph],
Yann Collet [ctb, cph] (Yann Collet is author of the bundled LZ4 and
ZSTD code and copyright holder of LZ4),
Facebook, Inc. [cph] (Bundled ZSTD code)
Maintainer: Mark Klik <markklik@gmail.com>
Diff between fst versions 0.8.2 dated 2017-12-18 and 0.8.4 dated 2018-01-25
fst-0.8.2/fst/tests/testthat/some_fst_file.fst |only fst-0.8.4/fst/DESCRIPTION | 16 - fst-0.8.4/fst/MD5 | 62 ++--- fst-0.8.4/fst/NAMESPACE | 13 + fst-0.8.4/fst/R/fst.R | 11 fst-0.8.4/fst/R/fst_table.R |only fst-0.8.4/fst/R/package.R | 6 fst-0.8.4/fst/man/fst-package.Rd | 19 - fst-0.8.4/fst/man/fst.Rd |only fst-0.8.4/fst/man/write_fst.Rd | 5 fst-0.8.4/fst/src/flex_store.cpp | 1 fst-0.8.4/fst/src/flex_store.h | 2 fst-0.8.4/fst/src/fst_column.h | 27 ++ fst-0.8.4/fst/src/fstcore/LZ4/lz4.cpp | 192 +++++++++++----- fst-0.8.4/fst/src/fstcore/LZ4/lz4.h | 156 +++++++------ fst-0.8.4/fst/src/fstcore/LZ4/xxhash.c | 32 +- fst-0.8.4/fst/src/fstcore/compression/compression.cpp | 23 - fst-0.8.4/fst/src/fstcore/compression/compressor.cpp | 1 fst-0.8.4/fst/src/fstcore/factor/factor_v7.cpp | 5 fst-0.8.4/fst/src/fstcore/interface/fstcompressor.h | 141 +++++------ fst-0.8.4/fst/src/fstcore/interface/fstdefines.h | 9 fst-0.8.4/fst/src/fstcore/interface/fststore.cpp | 80 +++--- fst-0.8.4/fst/src/fstcore/interface/openmphelper.cpp | 10 fst-0.8.4/fst/src/fstcore/interface/openmphelper.h | 25 ++ fst-0.8.4/fst/src/fstcore_v1/character/character_v1.cpp | 2 fst-0.8.4/fst/src/openmp.cpp | 5 fst-0.8.4/fst/tests/testthat/FactorStore/data1.fst |binary fst-0.8.4/fst/tests/testthat/test_factor.R | 15 + fst-0.8.4/fst/tests/testthat/test_fst.R | 4 fst-0.8.4/fst/tests/testthat/test_fst_table.R |only fst-0.8.4/fst/tests/testthat/test_legacy.R | 2 fst-0.8.4/fst/tests/testthat/test_lintr.R | 9 fst-0.8.4/fst/tests/testthat/test_meta.R | 17 - fst-0.8.4/fst/tests/testthat/test_roundtrip.R | 13 + 34 files changed, 549 insertions(+), 354 deletions(-)
Title: Decode and Validate HEIMS Data from Department of Education,
Australia
Description: Decode elements of the Australian Higher Education Information Management System (HEIMS) data for clarity and performance. HEIMS is the record system of the Department of Education, Australia to record enrolments and completions in Australia's higher education system, as well as a range of relevant information. For more information, including the source of the data dictionary, see <http://heimshelp.education.gov.au/sites/heimshelp/dictionary/pages/data-element-dictionary>.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>
Diff between heims versions 0.3.2 dated 2018-01-08 and 0.4.0 dated 2018-01-25
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- R/read_heims_fst.R | 12 ++++++++---- tests/testthat.R | 12 +++++++----- tests/testthat/test_read_heims_fst.R | 3 +++ 5 files changed, 28 insertions(+), 19 deletions(-)
Title: Quantify the Relationship Between Development Rate and
Temperature in Ectotherms
Description: A set of functions to quantify the relationship between development
rate and temperature. The package comprises a set of models and estimated parameters
borrowed from a literature review in ectotherms (mostly arthropods).
Author: Francois Rebaudo [aut, cre],
Quentin Struelens [aut]
Maintainer: Francois Rebaudo <francois.rebaudo@ird.fr>
Diff between devRate versions 0.1.5 dated 2017-11-06 and 0.1.6 dated 2018-01-25
DESCRIPTION | 8 - MD5 | 96 ++++++++-------- NEWS.md | 11 + R/devRate.R | 5 R/devRate_info.R | 9 - README.md | 5 build/vignette.rds |binary data/analytis_77.RData |binary data/bayoh_03.RData |binary data/beta_16.RData |binary data/beta_95.RData |binary data/bieri1_83.RData |binary data/briere1_99.RData |binary data/briere2_99.RData |binary data/campbell_74.RData |binary data/damos_08.RData |binary data/damos_11.RData |binary data/davidson_44.RData |binary data/devRateEqList.RData |binary data/harcourtYee_82.RData |binary data/hilbertLogan_83.RData |binary data/janisch_32.RData |binary data/kontodimas_04.RData |binary data/lactin1_95.RData |binary data/lactin2_95.RData |binary data/lamb_92.RData |binary data/logan10_76.RData |binary data/logan6_76.RData |binary data/perf2_11.RData |binary data/poly2.RData |binary data/poly4.RData |binary data/ratkowsky_82.RData |binary data/ratkowsky_83.RData |binary data/regniere_12.RData |binary data/rootsq_82.RData |binary data/schoolfieldHigh_81.RData |binary data/schoolfieldLow_81.RData |binary data/schoolfield_81.RData |binary data/sharpeDeMichele_77.RData |binary data/shi_11.RData |binary data/stinner_74.RData |binary data/taylor_81.RData |binary data/wagner_88.RData |binary data/wang_82.RData |binary data/wangengel_98.RData |binary inst/doc/modelEvaluation.html | 156 +++++++++++++-------------- inst/doc/quickUserGuide.html | 238 +++++++++++++++++++++--------------------- man/devRate.Rd | 5 man/devRatePlotInfo.Rd | 1 49 files changed, 276 insertions(+), 258 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-06 0.6
2017-02-11 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-17 0.8.1
2015-11-11 0.7.3
2015-10-25 0.7.2
2015-08-12 0.7.1
2015-08-10 0.7.0
2014-12-29 0.6.3
2014-06-02 0.6.2
2014-06-01 0.6.0
2014-04-23 0.5.0
2014-03-30 0.4.0
2014-03-20 0.3.5
2014-03-07 0.3.4
2014-02-25 0.3.3
2014-02-18 0.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-02 1.9.0
2017-11-02 1.9.1
2017-04-07 1.7.5
2017-03-21 1.5.5
2017-03-07 1.5.1
2017-01-12 1.5.0
2016-12-05 1.4.9
2016-11-08 1.4.5
2016-10-12 1.4.0
2016-08-18 1.3.0
2016-05-06 1.2.7
2016-04-03 1.2.5
2016-03-31 1.2.0
2016-03-06 1.1.5
2016-02-07 1.1.1
2015-12-10 1.1.0
2015-10-27 1.0.0
2015-08-27 0.50
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-28 0.0.1
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2017-09-29 1.0
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2017-05-02 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-19 0.16
2017-11-26 0.15
2017-10-02 0.14
2016-12-29 0.13
2016-11-01 0.12
2016-05-12 0.11
2015-09-21 0.10
2014-08-13 0.9
2014-03-08 0.8
2013-07-24 0.7
2013-06-07 0.6
2013-05-08 0.5
2013-04-03 0.4
2013-01-31 0.3
2012-09-29 0.2
2012-07-19 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-30 0.6-3
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2016-12-27 1.1.0
2016-09-02 1.0.3
2016-05-13 1.0.2
2014-08-29 1.0
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2017-10-31 0.8.1
2017-02-08 0.7.1
2017-01-05 0.7.0
2016-10-06 0.6.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-28 0.0-3
2017-09-10 0.0-2
2017-08-14 0.0-1