Title: Mock the Unix Make Utility
Description: Use R as a minimal build system. This might come in handy
if you are developing R packages and can not use a proper build
system. Stay away if you can (use a proper build system).
Author: Andreas Dominik Cullmann [aut, cre]
Maintainer: Andreas Dominik Cullmann <fvafrcu@arcor.de>
Diff between fakemake versions 1.0.2 dated 2017-11-27 and 1.1.0 dated 2018-01-26
DESCRIPTION | 8 ++--- MD5 | 18 +++++------ NEWS.md | 8 +++++ R/main.R | 20 +++++++------ R/package_makelist.R | 15 +++++---- build/vignette.rds |binary inst/doc/An_Introduction_to_fakemake.html | 46 +++++++++++++++--------------- man/make.Rd | 6 ++- man/read_makefile.Rd | 9 +++-- man/write_makefile.Rd | 5 +-- 10 files changed, 77 insertions(+), 58 deletions(-)
Title: Multilevel Networks Analysis
Description: Analyze multilevel networks as described in Lazega et al (2008)
<doi:10.1016/j.socnet.2008.02.001> and in Lazega and Snijders
(2016, ISBN:978-3-319-24520-1). The package was developed essentially as an
extension to 'igraph'.
Author: Neylson Crepalde [aut, cre]
Maintainer: Neylson Crepalde <neylsoncrepalde@gmail.com>
Diff between multinets versions 0.1.0 dated 2017-11-21 and 0.2.0 dated 2018-01-26
DESCRIPTION | 15 +++++---- MD5 | 28 +++++++++++------- NAMESPACE | 2 + NEWS.md |only R/RcppExports.R |only R/layout_multilevel.R | 18 ----------- R/mode_transformation.R | 16 +++------- R/rcpp_roxy.R |only R/set_color_multilevel.R | 39 +++++++++++++------------ R/set_shape_multilevel.R | 6 ++- R/zzz.R | 4 ++ README.md | 46 +++++++++++++++++++++++------- man/set_shape_multilevel.Rd | 1 src |only tests/testthat/test-mode_transformation.R | 17 +++++++++-- 15 files changed, 113 insertions(+), 79 deletions(-)
Title: Algorithms using Alternating Direction Method of Multipliers
Description: Provides algorithms to solve popular optimization problems in statistics such as regression or denoising based on Alternating Direction Method of Multipliers (ADMM).
See Boyd et al (2010) <doi:10.1561/2200000016> for complete introduction to the method.
Author: Kisung You <https://orcid.org/0000-0002-8584-459X> [aut, cre]
Maintainer: Kisung You <kyou@nd.edu>
Diff between ADMM versions 0.1.0 dated 2017-11-02 and 0.2.0 dated 2018-01-26
ADMM-0.1.0/ADMM/man/ADMM-package.Rd |only ADMM-0.2.0/ADMM/DESCRIPTION | 14 ++++++++------ ADMM-0.2.0/ADMM/MD5 | 34 ++++++++++++++++++---------------- ADMM-0.2.0/ADMM/NAMESPACE | 1 + ADMM-0.2.0/ADMM/R/admm-package.R | 5 +++-- ADMM-0.2.0/ADMM/R/admm.bp.R | 10 +++++----- ADMM-0.2.0/ADMM/R/admm.lad.R | 10 +++++----- ADMM-0.2.0/ADMM/R/admm.lasso.R | 15 +++++++++------ ADMM-0.2.0/ADMM/R/admm.tv.R | 12 ++++++------ ADMM-0.2.0/ADMM/build |only ADMM-0.2.0/ADMM/inst |only ADMM-0.2.0/ADMM/man/ADMM.Rd |only ADMM-0.2.0/ADMM/man/BP.Rd | 10 +++++----- ADMM-0.2.0/ADMM/man/LAD.Rd | 10 +++++----- ADMM-0.2.0/ADMM/man/LASSO.Rd | 15 +++++++++------ ADMM-0.2.0/ADMM/man/TV.Rd | 12 ++++++------ ADMM-0.2.0/ADMM/src/admm_bp.cpp | 2 +- ADMM-0.2.0/ADMM/src/admm_lad.cpp | 4 ++-- ADMM-0.2.0/ADMM/src/admm_lasso.cpp | 2 +- ADMM-0.2.0/ADMM/src/admm_tv.cpp | 2 +- 20 files changed, 85 insertions(+), 73 deletions(-)
Title: Multiobjective Genetic Algorithm for Variable Selection in
Regression
Description: Functions for exploring the best subsets in regression with a genetic algorithm. The package is much faster than methods relying on complete enumeration, and is suitable for data sets with large number of variables. For more information, see Sinha, Malo & Kuosmanen (2015) <doi:10.1080/10618600.2014.899236>.
Author: Tommi Pajala [aut, cre],
Pekka Malo [aut],
Ankur Sinha [aut],
Timo Kuosmanen [ctb]
Maintainer: Tommi Pajala <tommi.pajala@aalto.fi>
Diff between mogavs versions 1.0.1 dated 2015-11-06 and 1.1.0 dated 2018-01-26
DESCRIPTION | 15 +++--- MD5 | 12 ++--- R/createAdditionalPlots.R | 12 ++++- data/crimeData.rda |binary data/sampleData.rda |binary man/createAdditionalPlots.Rd | 102 +++++++++++++++++++++---------------------- man/mogavs-package.Rd | 70 ++++++++++++++--------------- 7 files changed, 111 insertions(+), 100 deletions(-)
Title: Matching Algorithms in R and C++
Description: Computes matching algorithms quickly using Rcpp.
Implements the Gale-Shapley Algorithm to compute the stable
matching for two-sided markets, such as the stable marriage
problem and the college-admissions problem. Implements Irving's
Algorithm for the stable roommate problem. Implements the top
trading cycle algorithm for the indivisible goods trading problem.
Author: Jan Tilly, Nick Janetos
Maintainer: Jan Tilly <jantilly@gmail.com>
Diff between matchingR versions 1.2.1 dated 2015-11-01 and 1.3.0 dated 2018-01-26
matchingR-1.2.1/matchingR/README.md |only matchingR-1.2.1/matchingR/inst/doc/matchingR-performance.R |only matchingR-1.2.1/matchingR/inst/doc/matchingR-performance.Rmd |only matchingR-1.2.1/matchingR/inst/doc/matchingR-performance.html |only matchingR-1.2.1/matchingR/vignettes/matchingR-performance.Rmd |only matchingR-1.3.0/matchingR/DESCRIPTION | 13 matchingR-1.3.0/matchingR/MD5 | 95 - matchingR-1.3.0/matchingR/NAMESPACE | 23 matchingR-1.3.0/matchingR/NEWS.md | 13 matchingR-1.3.0/matchingR/R/RcppExports.R | 21 matchingR-1.3.0/matchingR/R/galeshapley.R | 139 + matchingR-1.3.0/matchingR/R/matchingR.R | 3 matchingR-1.3.0/matchingR/R/roommate.R | 139 - matchingR-1.3.0/matchingR/R/toptradingcycle.R | 12 matchingR-1.3.0/matchingR/R/utils.R | 18 matchingR-1.3.0/matchingR/build/vignette.rds |binary matchingR-1.3.0/matchingR/inst/doc/matchingR-intro.R | 4 matchingR-1.3.0/matchingR/inst/doc/matchingR-intro.Rmd | 4 matchingR-1.3.0/matchingR/inst/doc/matchingR-intro.html | 718 ++++++---- matchingR-1.3.0/matchingR/man/cpp_wrapper_galeshapley.Rd | 19 matchingR-1.3.0/matchingR/man/cpp_wrapper_galeshapley_check_stability.Rd | 3 matchingR-1.3.0/matchingR/man/cpp_wrapper_irving.Rd | 4 matchingR-1.3.0/matchingR/man/cpp_wrapper_irving_check_stability.Rd | 4 matchingR-1.3.0/matchingR/man/cpp_wrapper_ttc.Rd | 3 matchingR-1.3.0/matchingR/man/cpp_wrapper_ttc_check_stability.Rd | 3 matchingR-1.3.0/matchingR/man/galeShapley.checkPreferences.Rd | 3 matchingR-1.3.0/matchingR/man/galeShapley.checkStability.Rd | 3 matchingR-1.3.0/matchingR/man/galeShapley.collegeAdmissions.Rd | 13 matchingR-1.3.0/matchingR/man/galeShapley.marriageMarket.Rd | 5 matchingR-1.3.0/matchingR/man/galeShapley.validate.Rd | 3 matchingR-1.3.0/matchingR/man/matchingR-deprecated.Rd | 24 matchingR-1.3.0/matchingR/man/matchingR-package.Rd | 16 matchingR-1.3.0/matchingR/man/rankIndex.Rd | 3 matchingR-1.3.0/matchingR/man/repcol.Rd | 5 matchingR-1.3.0/matchingR/man/reprow.Rd | 5 matchingR-1.3.0/matchingR/man/roommate.Rd | 3 matchingR-1.3.0/matchingR/man/roommate.checkPreferences.Rd | 3 matchingR-1.3.0/matchingR/man/roommate.checkStability.Rd | 3 matchingR-1.3.0/matchingR/man/roommate.validate.Rd | 3 matchingR-1.3.0/matchingR/man/sortIndex.Rd | 3 matchingR-1.3.0/matchingR/man/sortIndexOneSided.Rd | 3 matchingR-1.3.0/matchingR/man/toptrading.Rd | 3 matchingR-1.3.0/matchingR/man/toptrading.checkStability.Rd | 3 matchingR-1.3.0/matchingR/src/RcppExports.cpp | 92 - matchingR-1.3.0/matchingR/src/galeshapley.cpp | 12 matchingR-1.3.0/matchingR/src/roommate.cpp | 2 matchingR-1.3.0/matchingR/src/toptradingcycle.cpp | 2 matchingR-1.3.0/matchingR/src/utils.cpp | 3 matchingR-1.3.0/matchingR/tests/testthat/test_galeshapley.R | 72 - matchingR-1.3.0/matchingR/tests/testthat/test_helper.R | 30 matchingR-1.3.0/matchingR/vignettes/matchingR-intro.Rmd | 4 51 files changed, 1018 insertions(+), 541 deletions(-)
Title: Inequality Constrained Inference in Linear Normal Situations
Description: Implements inequality constrained inference. This includes parameter estimation in normal (linear) models under linear equality and inequality constraints, as well as normal likelihood ratio tests involving inequality-constrained hypotheses. For inequality-constrained linear models, averaging over R-squared for different orderings of regressors is also included.
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <groemping@beuth-hochschule.de>
Diff between ic.infer versions 1.1-5 dated 2014-08-01 and 1.1-6 dated 2018-01-26
DESCRIPTION | 12 ++++++------ MD5 | 17 +++++++++-------- NAMESPACE | 23 ++++++++++++++++++----- R/sysdata.rda |binary build |only inst/NEWS | 7 +++++++ inst/doc/ic.infer.R | 1 + inst/doc/ic.infer.pdf |binary man/ic.weights.rd | 6 +++--- man/internal.functions.rd | 6 +++--- 10 files changed, 47 insertions(+), 25 deletions(-)
Title: Tools for Reading AIDA Files
Description: Read objects from the AIDA (<http://aida.freehep.org/>) file and make them available as dataframes in R.
Author: Andreas Pfeiffer <apfeiffer1@gmail.com>
Maintainer: Andreas Pfeiffer <apfeiffer1@gmail.com>
Diff between aidar versions 1.0.0 dated 2013-12-11 and 1.0.5 dated 2018-01-26
aidar-1.0.0/aidar/inst/tests |only aidar-1.0.5/aidar/DESCRIPTION | 14 +++---- aidar-1.0.5/aidar/MD5 | 32 ++++++++-------- aidar-1.0.5/aidar/NAMESPACE | 1 aidar-1.0.5/aidar/R/aidar.R | 34 ++++++++++++----- aidar-1.0.5/aidar/inst/extdata/partialEmptyBins.xml.gz |only aidar-1.0.5/aidar/inst/extdata/tuple.xml.gz |binary aidar-1.0.5/aidar/tests/run-all.R | 4 -- aidar-1.0.5/aidar/tests/testthat |only 9 files changed, 50 insertions(+), 35 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to help safely and efficiently organize Monte Carlo simulations in R.
The package controls the structure and back-end of Monte Carlo simulations
by utilizing a general generate-analyse-summarise strategy. The functions provided control
common simulation issues such as re-simulating non-convergent results, support parallel
back-end and MPI distributed computations, save and restore temporary files,
aggregate results across independent nodes, and provide native support for debugging.
For a pedagogical introduction to the package refer to
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>.
Author: Phil Chalmers [aut, cre],
Matthew Sigal [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 1.8 dated 2017-10-29 and 1.9 dated 2018-01-26
DESCRIPTION | 8 MD5 | 136 ++++---- NAMESPACE | 6 R/Attach.R | 2 R/Serlin2000.R |only R/SimAnova.R | 2 R/SimBoot.R |only R/SimClean.R | 2 R/SimDesign.R | 8 R/SimFunctions.R | 4 R/SimResults.R | 2 R/SimShiny.R | 2 R/add_missing.R | 2 R/aggregate_simulations.R | 2 R/analysis.R | 54 +-- R/boot_predict.R |only R/functions.R | 8 R/rejectionSampling.R |only R/rgenerate.R | 69 +++- R/rtruncate.R | 2 R/runSimulation.R | 187 +++++++---- R/subset.SimDesign.R | 2 R/summary_functions.R | 68 ++-- build/partial.rdb |only build/vignette.rds |binary inst/doc/Catch_errors.Rmd | 18 - inst/doc/Catch_errors.html | 389 +++++++++++++++-------- inst/doc/Fixed_obj_fun.Rmd | 10 inst/doc/Fixed_obj_fun.html | 387 +++++++++++++++-------- inst/doc/Saving-results.R | 6 inst/doc/Saving-results.Rmd | 24 + inst/doc/Saving-results.html | 556 +++++++++++++++++++++++---------- inst/doc/SimDesign-intro.Rmd | 84 ++--- inst/doc/SimDesign-intro.html | 697 +++++++++++++++++++++++++++++------------- man/Analyse.Rd | 2 man/Attach.Rd | 2 man/BF_sim.Rd | 2 man/BF_sim_alternative.Rd | 2 man/ECR.Rd | 20 - man/EDR.Rd | 2 man/Generate.Rd | 2 man/MAE.Rd | 2 man/RD.Rd | 2 man/RE.Rd | 2 man/RMSE.Rd | 2 man/Serlin2000.Rd |only man/SimAnova.Rd | 2 man/SimBoot.Rd |only man/SimClean.Rd | 2 man/SimDesign.Rd | 4 man/SimFunctions.Rd | 4 man/SimResults.Rd | 2 man/SimShiny.Rd | 2 man/Summarise.Rd | 2 man/add_missing.Rd | 2 man/aggregate_simulations.Rd | 2 man/bias.Rd | 22 - man/boot_predict.Rd |only man/rHeadrick.Rd | 4 man/rValeMaurelli.Rd | 4 man/rejectionSampling.Rd |only man/rint.Rd |only man/rinvWishart.Rd | 2 man/rmgh.Rd | 4 man/rmvnorm.Rd | 2 man/rmvt.Rd | 2 man/rtruncate.Rd | 2 man/runSimulation.Rd | 95 ++++- man/subset.SimDesign.Rd | 2 tests/tests/test-SimDesign.R | 10 vignettes/Catch_errors.Rmd | 18 - vignettes/Fixed_obj_fun.Rmd | 10 vignettes/Saving-results.Rmd | 24 + vignettes/SimDesign-intro.Rmd | 84 ++--- 74 files changed, 2071 insertions(+), 1013 deletions(-)
Title: A GUI for the UNU.RAN Random Variate Generators
Description: A GUI (Graphical User Interface) for the UNU.RAN random variate
generators. Thus it allows to build non-uniform random number
generators interactively for quite arbitrary distributions.
In addition, R code for the required calls from package Runuran can
be displayed and stored for later use. Some basic analysis like
goodness-of-fit tests can be performed.
Author: Josef Leydold
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between RunuranGUI versions 0.1 dated 2010-10-26 and 0.2 dated 2018-01-26
DESCRIPTION | 31 ++++++++++++++++--------------- MD5 |only NAMESPACE | 10 +++++++++- NEWS | 5 +++++ R/common.R | 13 +++++++++---- R/stage1.R | 5 +++-- R/stage2.R | 14 ++++++++------ R/stage3.R | 10 +++++----- R/utils.R |only inst/tests/test.R | 11 ++++++++--- man/RunuranGUI-package.Rd | 4 ++-- 11 files changed, 65 insertions(+), 38 deletions(-)
Title: R Optimization Infrastructure
Description: The R Optimization Infrastructure ('ROI') is a
sophisticated framework for handling optimization problems in R.
Author: Kurt Hornik [aut],
David Meyer [aut],
Florian Schwendinger [aut],
Stefan Theussl [aut, cre],
Diethelm Wuertz [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI versions 0.3-0 dated 2017-10-20 and 0.3-1 dated 2018-01-26
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 2 ++ R/bounds.R | 4 ++++ R/objective.R | 2 +- 5 files changed, 15 insertions(+), 9 deletions(-)
Title: Cross-Platform File System Operations Based on 'libuv'
Description: A cross-platform interface to file system operations, built on
top of the 'libuv' C library.
Author: Jim Hester [aut, cre],
Hadley Wickham [aut],
libuv project contributors [cph] (libuv library),
Joyent, Inc. and other Node contributors [cph] (libuv library),
RStudio [cph, fnd]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between fs versions 1.0.0 dated 2018-01-19 and 1.1.0 dated 2018-01-26
fs-1.0.0/fs/R/file_move.R |only fs-1.0.0/fs/src/libuv/docs |only fs-1.0.0/fs/src/libuv/img |only fs-1.0.0/fs/src/libuv/samples |only fs-1.0.0/fs/src/libuv/test |only fs-1.0.0/fs/src/libuv/tools |only fs-1.0.0/fs/tests/testthat/test-dir.R |only fs-1.0.0/fs/tests/testthat/test-file_move.R |only fs-1.1.0/fs/DESCRIPTION | 6 fs-1.1.0/fs/MD5 | 380 - fs-1.1.0/fs/NEWS.md | 31 fs-1.1.0/fs/R/RcppExports.R | 4 fs-1.1.0/fs/R/access.R | 5 fs-1.1.0/fs/R/copy.R | 52 fs-1.1.0/fs/R/create.R | 15 fs-1.1.0/fs/R/delete.R | 11 fs-1.1.0/fs/R/file.R | 51 fs-1.1.0/fs/R/id.R | 8 fs-1.1.0/fs/R/is.R | 6 fs-1.1.0/fs/R/link.R | 2 fs-1.1.0/fs/R/list.R | 17 fs-1.1.0/fs/R/path.R | 12 fs-1.1.0/fs/R/temp.R | 8 fs-1.1.0/fs/R/utils.R | 44 fs-1.1.0/fs/README.md | 146 fs-1.1.0/fs/man/copy.Rd | 2 fs-1.1.0/fs/man/file_move.Rd | 2 fs-1.1.0/fs/man/id.Rd | 8 fs-1.1.0/fs/man/path_home.Rd | 2 fs-1.1.0/fs/man/path_tidy.Rd | 2 fs-1.1.0/fs/src/Makevars | 11 fs-1.1.0/fs/src/RcppExports.cpp | 12 fs-1.1.0/fs/src/dir.cc | 18 fs-1.1.0/fs/src/error.h | 6 fs-1.1.0/fs/src/file.cc | 17 fs-1.1.0/fs/src/libuv/Makefile.in | 55 fs-1.1.0/fs/src/libuv/aclocal.m4 | 67 fs-1.1.0/fs/src/libuv/ar-lib | 2 fs-1.1.0/fs/src/libuv/compile | 9 fs-1.1.0/fs/src/libuv/config.guess | 375 + fs-1.1.0/fs/src/libuv/config.sub | 105 fs-1.1.0/fs/src/libuv/configure | 2096 ++++------ fs-1.1.0/fs/src/libuv/depcomp | 6 fs-1.1.0/fs/src/libuv/install-sh | 364 + fs-1.1.0/fs/src/libuv/ltmain.sh | 5452 ++++++++++------------------ fs-1.1.0/fs/src/libuv/m4/libtool.m4 | 2546 +++++-------- fs-1.1.0/fs/src/libuv/m4/lt_obsolete.m4 |only fs-1.1.0/fs/src/libuv/m4/ltoptions.m4 | 127 fs-1.1.0/fs/src/libuv/m4/ltsugar.m4 | 7 fs-1.1.0/fs/src/libuv/m4/ltversion.m4 | 12 fs-1.1.0/fs/src/libuv/missing | 6 fs-1.1.0/fs/src/link.cc | 2 fs-1.1.0/fs/src/path.cc | 22 fs-1.1.0/fs/src/utils.h |only fs-1.1.0/fs/tests/testthat/test-access.R | 12 fs-1.1.0/fs/tests/testthat/test-copy.R | 43 fs-1.1.0/fs/tests/testthat/test-create.R | 5 fs-1.1.0/fs/tests/testthat/test-delete.R |only fs-1.1.0/fs/tests/testthat/test-file.R | 66 fs-1.1.0/fs/tests/testthat/test-link.R |only fs-1.1.0/fs/tests/testthat/test-list.R | 48 fs-1.1.0/fs/tests/testthat/test-path.R | 14 fs-1.1.0/fs/tests/testthat/test-temp.R | 4 63 files changed, 5095 insertions(+), 7228 deletions(-)
Title: Fast Probabilistic Record Linkage with Missing Data
Description: Implements a Fellegi-Sunter probabilistic record linkage model that allows for missing data
and the inclusion of auxiliary information. This includes functionalities to conduct a merge of two datasets under the Fellegi-Sunter model
using the Expectation-Maximization algorithm. In addition, tools for preparing, adjusting, and summarizing
data merges are included. The package implements methods described in Enamorado, Fifield,
and Imai (2017) ''Using a Probabilistic Model to Assist Merging of Large-scale Administrative
Records'', available at <http://imai.princeton.edu/research/linkage.html>.
Author: Ted Enamorado [aut, cre],
Ben Fifield [aut],
Kosuke Imai [aut]
Maintainer: Ted Enamorado <fastlinkr@gmail.com>
Diff between fastLink versions 0.2.0 dated 2017-09-01 and 0.3.0 dated 2018-01-26
DESCRIPTION | 10 +-- MD5 | 105 +++++++++++++++++++++-------------------- NAMESPACE | 3 + R/RcppExports.R | 6 +- R/confusion.R |only R/dedupeMatches.R | 30 +++++++++-- R/emlinkMARmov.R | 8 ++- R/fastLink-package.R | 4 - R/fastLink.R | 94 +++++++++++++++++++++++++++--------- R/gammaCKpar.R | 15 ++++- R/gammaNUMCK2par.R |only R/gammaNUMCKpar.R |only R/getPosterior.R | 30 +++++++++-- R/matchesLink.R | 2 R/nameReweight.R | 45 +++++++++++------ data/countyname_to_fips.RData |binary data/cps_statemovers.RData |binary data/irs_countymigration.RData |binary data/irs_statemigration.RData |binary data/samplematch.RData |binary data/statecode_to_fips.RData |binary man/aggregateEM.Rd | 1 man/calcMoversPriors.Rd | 1 man/clusterMatch.Rd | 1 man/confusion.Rd |only man/countyfips.Rd | 1 man/countyinflow.Rd | 1 man/countyoutflow.Rd | 1 man/dedupeMatches.Rd | 15 ++++- man/dfA.Rd | 1 man/dfB.Rd | 1 man/emlinkMARmov.Rd | 1 man/emlinkRS.Rd | 1 man/fastLink-package.Rd | 13 ++--- man/fastLink.Rd | 18 +++++-- man/gammaCK2par.Rd | 1 man/gammaCKpar.Rd | 1 man/gammaKpar.Rd | 1 man/gammaNUMCK2par.Rd |only man/gammaNUMCKpar.Rd |only man/getMatches.Rd | 1 man/getPosterior.Rd | 12 +++- man/inspectEM.Rd | 1 man/matchesLink.Rd | 1 man/nameReweight.Rd | 13 +++-- man/plot.fastLink.Rd | 1 man/preprocText.Rd | 1 man/print.inspectEM.Rd | 1 man/statefips.Rd | 1 man/stateinflow.Rd | 1 man/statemove.Rd | 1 man/stateoutflow.Rd | 1 man/summary.fastLink.Rd | 1 man/tableCounts.Rd | 1 src/RcppExports.cpp | 12 ++++ src/fastLink_init.c | 2 src/helpers.cpp |only 57 files changed, 303 insertions(+), 159 deletions(-)
Title: Amend, Augment and Aid Analysis of John Snow's Cholera Data
Description: Amends errors, augments data and aids analysis of John Snow's map
of the 1854 London cholera outbreak.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>
Diff between cholera versions 0.2.1 dated 2017-08-10 and 0.3.0 dated 2018-01-26
cholera-0.2.1/cholera/R/sysdata.rda |only cholera-0.2.1/cholera/R/walkingPath.R |only cholera-0.2.1/cholera/inst/doc/unstacking.fatalities.R |only cholera-0.2.1/cholera/inst/doc/unstacking.fatalities.Rmd |only cholera-0.2.1/cholera/inst/doc/unstacking.fatalities.html |only cholera-0.2.1/cholera/man/plot.time.series.Rd |only cholera-0.2.1/cholera/man/summary.voronoi.Rd |only cholera-0.2.1/cholera/man/summary.walking.Rd |only cholera-0.2.1/cholera/man/walkingPath.Rd |only cholera-0.2.1/cholera/vignettes/unstacking.fatalities.Rmd |only cholera-0.3.0/cholera/DESCRIPTION | 22 cholera-0.3.0/cholera/MD5 | 203 - cholera-0.3.0/cholera/NAMESPACE | 24 cholera-0.3.0/cholera/NEWS | 55 cholera-0.3.0/cholera/R/addIndexCase.R |only cholera-0.3.0/cholera/R/addKernelDensity.R | 3 cholera-0.3.0/cholera/R/addLandmarks.R | 6 cholera-0.3.0/cholera/R/addPlaguePit.R | 8 cholera-0.3.0/cholera/R/addSnow.R | 96 cholera-0.3.0/cholera/R/addVoronoi.R | 10 cholera-0.3.0/cholera/R/addWhitehead.R | 11 cholera-0.3.0/cholera/R/caseLocator.R | 36 cholera-0.3.0/cholera/R/cholera.R | 10 cholera-0.3.0/cholera/R/classifierAudit.R |only cholera-0.3.0/cholera/R/data.R | 18 cholera-0.3.0/cholera/R/euclideanDistance.R |only cholera-0.3.0/cholera/R/nearestPath.R |only cholera-0.3.0/cholera/R/nearestPump.R |only cholera-0.3.0/cholera/R/nodeData.R |only cholera-0.3.0/cholera/R/pumpCase.R | 17 cholera-0.3.0/cholera/R/pumpData.R | 6 cholera-0.3.0/cholera/R/pumpLocator.R | 3 cholera-0.3.0/cholera/R/roadSegments.R | 4 cholera-0.3.0/cholera/R/segmentLength.R |only cholera-0.3.0/cholera/R/segmentLocator.R | 85 cholera-0.3.0/cholera/R/simulateFatalities.R | 2 cholera-0.3.0/cholera/R/snowColors.R | 5 cholera-0.3.0/cholera/R/snowMap.R | 7 cholera-0.3.0/cholera/R/snowNeighborhood.R |only cholera-0.3.0/cholera/R/streetLength.R |only cholera-0.3.0/cholera/R/streetNameLocator.R | 77 cholera-0.3.0/cholera/R/streetNumberLocator.R | 89 cholera-0.3.0/cholera/R/timeSeries.R | 41 cholera-0.3.0/cholera/R/unitMeter.R |only cholera-0.3.0/cholera/R/unstack.R | 41 cholera-0.3.0/cholera/R/voronoi.R | 85 cholera-0.3.0/cholera/R/walking.R | 1516 ++++------- cholera-0.3.0/cholera/R/walkingDistance.R | 572 ++-- cholera-0.3.0/cholera/README.md | 71 cholera-0.3.0/cholera/build/vignette.rds |binary cholera-0.3.0/cholera/data/ortho.proj.RData |binary cholera-0.3.0/cholera/inst/doc/duplicate.missing.cases.Rmd | 10 cholera-0.3.0/cholera/inst/doc/duplicate.missing.cases.html | 82 cholera-0.3.0/cholera/inst/doc/pump.neighborhoods.R | 18 cholera-0.3.0/cholera/inst/doc/pump.neighborhoods.Rmd | 61 cholera-0.3.0/cholera/inst/doc/pump.neighborhoods.html | 97 cholera-0.3.0/cholera/inst/doc/roads.R | 3 cholera-0.3.0/cholera/inst/doc/roads.Rmd | 15 cholera-0.3.0/cholera/inst/doc/roads.html | 44 cholera-0.3.0/cholera/inst/doc/time.series.Rmd | 4 cholera-0.3.0/cholera/inst/doc/time.series.html | 10 cholera-0.3.0/cholera/inst/doc/unstacking.bars.R |only cholera-0.3.0/cholera/inst/doc/unstacking.bars.Rmd |only cholera-0.3.0/cholera/inst/doc/unstacking.bars.html |only cholera-0.3.0/cholera/man/addIndexCase.Rd |only cholera-0.3.0/cholera/man/addKernelDensity.Rd | 3 cholera-0.3.0/cholera/man/addLandmarks.Rd | 6 cholera-0.3.0/cholera/man/addPlaguePit.Rd | 7 cholera-0.3.0/cholera/man/addSnow.Rd | 21 cholera-0.3.0/cholera/man/addVoronoi.Rd | 9 cholera-0.3.0/cholera/man/addWhitehead.Rd | 9 cholera-0.3.0/cholera/man/caseLocator.Rd | 3 cholera-0.3.0/cholera/man/cholera-package.Rd | 10 cholera-0.3.0/cholera/man/classifierAudit.Rd |only cholera-0.3.0/cholera/man/euclideanDistance.Rd |only cholera-0.3.0/cholera/man/figures/README-expected-1.png |only cholera-0.3.0/cholera/man/figures/README-expected_area-1.png |only cholera-0.3.0/cholera/man/figures/README-voronoi-1.png |binary cholera-0.3.0/cholera/man/figures/README-walk-1.png |binary cholera-0.3.0/cholera/man/figures/README-walk7-1.png |only cholera-0.3.0/cholera/man/fixFatalities.Rd | 4 cholera-0.3.0/cholera/man/nearestPath.Rd |only cholera-0.3.0/cholera/man/nearestPump.Rd |only cholera-0.3.0/cholera/man/neighborhoodVoronoi.Rd | 12 cholera-0.3.0/cholera/man/neighborhoodWalking.Rd | 49 cholera-0.3.0/cholera/man/nodeData.Rd |only cholera-0.3.0/cholera/man/ortho.proj.Rd | 2 cholera-0.3.0/cholera/man/ortho.proj.pump.Rd | 2 cholera-0.3.0/cholera/man/ortho.proj.pump.vestry.Rd | 2 cholera-0.3.0/cholera/man/plot.classifier_audit.Rd |only cholera-0.3.0/cholera/man/plot.euclidean_distance.Rd |only cholera-0.3.0/cholera/man/plot.time_series.Rd |only cholera-0.3.0/cholera/man/plot.walking.Rd | 16 cholera-0.3.0/cholera/man/plot.walking_distance.Rd |only cholera-0.3.0/cholera/man/print.classifier_audit.Rd |only cholera-0.3.0/cholera/man/print.euclidean_distance.Rd |only cholera-0.3.0/cholera/man/print.time_series.Rd |only cholera-0.3.0/cholera/man/print.voronoi.Rd |only cholera-0.3.0/cholera/man/print.walking.Rd |only cholera-0.3.0/cholera/man/print.walking_distance.Rd |only cholera-0.3.0/cholera/man/pump.case.Rd | 6 cholera-0.3.0/cholera/man/pumpCase.Rd | 10 cholera-0.3.0/cholera/man/pumpData.Rd | 4 cholera-0.3.0/cholera/man/pumpLocator.Rd | 3 cholera-0.3.0/cholera/man/pumps.vestry.Rd | 2 cholera-0.3.0/cholera/man/roadSegments.Rd | 4 cholera-0.3.0/cholera/man/segmentLength.Rd |only cholera-0.3.0/cholera/man/segmentLocator.Rd | 25 cholera-0.3.0/cholera/man/sim.ortho.proj.Rd | 2 cholera-0.3.0/cholera/man/sim.pump.case.Rd | 6 cholera-0.3.0/cholera/man/simulateFatalities.Rd | 2 cholera-0.3.0/cholera/man/snowColors.Rd | 4 cholera-0.3.0/cholera/man/snowMap.Rd | 7 cholera-0.3.0/cholera/man/snowNeighborhood.Rd |only cholera-0.3.0/cholera/man/streetLength.Rd |only cholera-0.3.0/cholera/man/streetNameLocator.Rd | 12 cholera-0.3.0/cholera/man/streetNumberLocator.Rd | 14 cholera-0.3.0/cholera/man/timeSeries.Rd | 11 cholera-0.3.0/cholera/man/unitMeter.Rd |only cholera-0.3.0/cholera/man/unstackFatalities.Rd | 4 cholera-0.3.0/cholera/man/walkingDistance.Rd | 51 cholera-0.3.0/cholera/vignettes/duplicate.missing.cases.Rmd | 10 cholera-0.3.0/cholera/vignettes/pump.neighborhoods.Rmd | 61 cholera-0.3.0/cholera/vignettes/roads.Rmd | 15 cholera-0.3.0/cholera/vignettes/time.series.Rmd | 4 cholera-0.3.0/cholera/vignettes/unstacking.bars.Rmd |only 126 files changed, 2098 insertions(+), 1781 deletions(-)
Title: Tumor Mutation Detection in Plasma
Description: Aims at detecting single nucleotide variation
(SNV) and insertion/deletion (INDEL) in circulating tumor DNA (ctDNA), used
as a surrogate marker for tumor, at each base position of an Next Generation
Sequencing (NGS) analysis. Mutations are assessed by comparing the minor-allele
frequency at each position to the measured PER in control samples.
Author: Yves Rozenholc, Nicolas Pécuchet, Pierre Laurent-Puig
Maintainer: Yves Rozenholc <yves.rozenholc@parisdescartes.fr>
Diff between PlasmaMutationDetector versions 1.6.2 dated 2017-11-15 and 1.6.10 dated 2018-01-26
PlasmaMutationDetector-1.6.10/PlasmaMutationDetector/DESCRIPTION | 18 - PlasmaMutationDetector-1.6.10/PlasmaMutationDetector/MD5 | 19 - PlasmaMutationDetector-1.6.10/PlasmaMutationDetector/NAMESPACE | 2 PlasmaMutationDetector-1.6.10/PlasmaMutationDetector/R/functions.R | 158 +++++++--- PlasmaMutationDetector-1.6.10/PlasmaMutationDetector/man/BuildCtrlErrorRate.Rd | 9 PlasmaMutationDetector-1.6.10/PlasmaMutationDetector/man/DetectPlasmaMutation.Rd | 12 PlasmaMutationDetector-1.6.10/PlasmaMutationDetector/man/MAF_from_BAM.Rd | 11 PlasmaMutationDetector-1.6.10/PlasmaMutationDetector/man/PrepareLibrary.Rd | 11 PlasmaMutationDetector-1.6.10/PlasmaMutationDetector/man/hotspot.Rd | 4 PlasmaMutationDetector-1.6.2/PlasmaMutationDetector/inst/extdata/4test_only/case/Results |only 10 files changed, 161 insertions(+), 83 deletions(-)
More information about PlasmaMutationDetector at CRAN
Permanent link
Title: Robust Geostatistical Analysis of Spatial Data
Description: Provides functions for efficiently fitting linear models with
spatially correlated errors by robust and Gaussian (Restricted)
Maximum Likelihood and for computing robust and customary point
and block external-drift Kriging predictions, along with utility
functions for variogram modelling in ad hoc geostatistical analyses,
model building, model evaluation by cross-validation, (conditional)
simulation of Gaussian processes, unbiased back-transformation of
Kriging predictions of log-transformed data.
Author: Andreas Papritz [cre, aut],
Cornelia Schwierz [ctb]
Maintainer: Andreas Papritz <andreas.papritz@env.ethz.ch>
Diff between georob versions 0.3-5 dated 2017-10-20 and 0.3-6 dated 2018-01-26
georob-0.3-5/georob/man/S3methods.georob.Rd |only georob-0.3-5/georob/man/georob-package.Rd |only georob-0.3-6/georob/ChangeLog | 23 georob-0.3-6/georob/DESCRIPTION | 22 georob-0.3-6/georob/MD5 | 64 - georob-0.3-6/georob/NAMESPACE | 27 georob-0.3-6/georob/NEWS | 3 georob-0.3-6/georob/R/georob.S3methods.R | 400 ++++--- georob-0.3-6/georob/R/georob.cv.R | 1119 +++++++++++++++------- georob-0.3-6/georob/R/georob.exported.functions.R | 66 - georob-0.3-6/georob/R/georob.lgnpp.R | 490 ++++++--- georob-0.3-6/georob/R/georob.predict.R | 1026 ++++++++++++++++++-- georob-0.3-6/georob/R/georob.private.functions.R | 70 - georob-0.3-6/georob/R/georob.simulation.R |only georob-0.3-6/georob/build/vignette.rds |binary georob-0.3-6/georob/inst/doc/georob_vignette.pdf |binary georob-0.3-6/georob/man/control.georob.Rd | 53 - georob-0.3-6/georob/man/cv.Rd | 1 georob-0.3-6/georob/man/cv.georob.Rd | 37 georob-0.3-6/georob/man/fit.variogram.model.Rd | 27 georob-0.3-6/georob/man/georob.Rd | 26 georob-0.3-6/georob/man/georobModelBuilding.Rd | 34 georob-0.3-6/georob/man/georobObject.Rd | 29 georob-0.3-6/georob/man/georobPackage.Rd |only georob-0.3-6/georob/man/georobS3methods.Rd |only georob-0.3-6/georob/man/georobSimulation.Rd |only georob-0.3-6/georob/man/internal.functions.Rd | 21 georob-0.3-6/georob/man/lgnpp.Rd | 2 georob-0.3-6/georob/man/param.defaults.Rd | 7 georob-0.3-6/georob/man/param.names.Rd | 1 georob-0.3-6/georob/man/plot.georob.Rd | 26 georob-0.3-6/georob/man/pmm.Rd | 17 georob-0.3-6/georob/man/predict.georob.Rd | 80 + georob-0.3-6/georob/man/profilelogLik.Rd | 41 georob-0.3-6/georob/man/sample.variogram.Rd | 30 georob-0.3-6/georob/man/validate.predictions.Rd | 2 36 files changed, 2859 insertions(+), 885 deletions(-)
Title: Permutation Tests for Nonparametric Statistics
Description: Performs a permutation test on the difference between two location parameters, a permutation correlation test, a permutation F-test, the Siegel-Tukey test, a ratio mean deviance test. Also performs some graphing techniques, such as for confidence intervals, vector addition, and Fourier analysis; and includes functions related to the Laplace (double exponential) and triangular distributions. Performs power calculations for the binomial test.
Author: Steven T. Garren [aut, cre]
Maintainer: Steven T. Garren <GARRENST@JMU.EDU>
Diff between jmuOutlier versions 1.3 dated 2017-02-17 and 1.4 dated 2018-01-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/qlaplace.R | 2 +- R/qtriang.R | 3 +-- build/partial.rdb |binary man/jmuOutlier-package.Rd | 3 --- 6 files changed, 11 insertions(+), 15 deletions(-)
Title: Estimate Kinship and FST under Arbitrary Population Structure
Description: Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2016) <doi:10.1101/083923>.
Author: Alejandro Ochoa [aut, cre],
John D. Storey [aut]
Maintainer: Alejandro Ochoa <ochoa@princeton.edu>
Diff between popkin versions 1.0.4 dated 2018-01-15 and 1.0.5 dated 2018-01-26
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ inst/doc/popkin.R | 9 +++++++++ inst/doc/popkin.Rmd | 16 +++++++++++++++- inst/doc/popkin.pdf |binary vignettes/popkin.Rmd | 16 +++++++++++++++- 7 files changed, 52 insertions(+), 11 deletions(-)
Title: Lots of Superior Depictions
Description: Create lots of colorful plots in a plethora of variations. Try the LSD demotour().
Author: Bjoern Schwalb [aut, cre],
Achim Tresch [aut],
Phillipp Torkler [ctb],
Sebastian Duemcke [ctb],
Carina Demel [ctb],
Brian Ripley [ctb],
Bill Venables [ctb]
Maintainer: Bjoern Schwalb <schwalb.bjoern@gmail.com>
Diff between LSD versions 3.0 dated 2015-01-09 and 4.0-0 dated 2018-01-26
DESCRIPTION | 20 - MD5 | 72 ++--- NAMESPACE | 16 + R/LSD.heatscatter.R | 657 +++++++++++++++++++++++----------------------- man/LSD.pie.Rd | 2 man/align.Rd | 2 man/clusterplot.Rd | 2 man/colorpalette.Rd | 2 man/comparisonplot.Rd | 2 man/complementarycolor.Rd | 2 man/convertcolor.Rd | 2 man/convertgrey.Rd | 2 man/daltonize.Rd | 2 man/demotour.Rd | 2 man/densitylane.Rd | 2 man/disco.Rd | 2 man/distinctcolors.Rd | 2 man/ellipsescatter.Rd | 2 man/emptyplot.Rd | 2 man/fusionplot.Rd | 2 man/heatbarplot.Rd | 2 man/heatboxplot.Rd | 2 man/heathist.Rd | 2 man/heatpairs.Rd | 6 man/heatscatter.Rd | 2 man/heatscatterpoints.Rd | 2 man/intersphere.Rd | 2 man/linesplot.Rd | 2 man/makemovie.Rd | 2 man/msdplot.Rd | 2 man/plotit.Rd | 2 man/plotmatrix.Rd | 2 man/singleclusterplot.Rd | 2 man/singlefusionplot.Rd | 2 man/singlemsdplot.Rd | 2 man/webdesign.Rd | 2 man/windowxy.Rd | 2 37 files changed, 441 insertions(+), 394 deletions(-)
Title: Path Diagrams for Lavaan Models via DiagrammeR
Description: Plots path diagrams from models in lavaan using the plotting
functionality from the DiagrammeR package. DiagrammeR provides nice path diagrams
via Graphviz, and these functions make it easy to generate these diagrams from a
lavaan path model without having to write the DOT language graph specification.
Author: Alex Lishinski
Maintainer: Alex Lishinski <alexlishinski@gmail.com>
Diff between lavaanPlot versions 0.1.0 dated 2017-06-10 and 0.3.0 dated 2018-01-26
DESCRIPTION | 7 +- MD5 | 22 +++++---- NEWS.md |only R/lavaanPlot.R | 77 +++++++++++++++++++++++++++++--- build/vignette.rds |binary inst/doc/Intro_to_lavaanPlot.R | 30 +++++++++++- inst/doc/Intro_to_lavaanPlot.Rmd | 41 +++++++++++++++-- inst/doc/Intro_to_lavaanPlot.html | 90 ++++++++++++++++++++++++++++++++------ man/buildCall.Rd | 10 +++- man/buildPaths.Rd | 8 ++- man/getNodes.Rd |only man/lavaanPlot.Rd | 9 +++ vignettes/Intro_to_lavaanPlot.Rmd | 41 +++++++++++++++-- 13 files changed, 284 insertions(+), 51 deletions(-)
Title: Access the 'languagelayer' API
Description: Improve your text analysis with languagelayer
<https://languagelayer.com>, a powerful language detection
API.
Author: Colin FAY [aut, cre]
Maintainer: Colin FAY <contact@colinfay.me>
Diff between languagelayeR versions 1.2.1 dated 2018-01-05 and 1.2.3 dated 2018-01-26
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/get_lang.R | 2 +- R/get_supported_lang.R | 2 +- R/utils.R | 4 +--- inst/doc/Introduction.html | 40 ++++++++++++++++++++-------------------- 6 files changed, 32 insertions(+), 34 deletions(-)
Title: Statistical Disclosure Control Methods for Anonymization of
Microdata and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly
confidential. This package can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files. In
addition, various risk estimation methods are included. Note that the package
includes a graphical user interface that allows to use various methods of this
package.
Author: Matthias Templ, Alexander Kowarik, Bernhard Meindl
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between sdcMicro versions 5.0.4 dated 2017-10-20 and 5.1.0 dated 2018-01-26
DESCRIPTION | 8 MD5 | 57 NAMESPACE | 2 NEWS | 12 R/GUIfunctions.R | 3 R/freqCalc.r | 19 R/localSuppression.R | 164 - R/methods.r | 48 R/pram.R | 316 +-- R/riskyCells.R | 191 + README.md | 1 build/partial.rdb |binary build/vignette.rds |binary inst/doc/sdcApp.R |only inst/doc/sdcApp.Rmd | 7 inst/doc/sdcApp.html | 940 +++------ inst/doc/sdc_guidelines.R | 101 - inst/doc/sdc_guidelines.pdf |binary inst/doc/sdc_guidelines.rnw | 1684 +++-------------- inst/shiny/sdcApp/controllers/reactive_expressions.R | 4 inst/shiny/sdcApp/controllers/ui_categorical.R | 13 inst/shiny/sdcApp/controllers/ui_results_categorical.R | 10 inst/shiny/sdcApp/controllers/ui_sidebar_problemInfo.R | 2 inst/shiny/sdcApp/global.R | 24 inst/shiny/sdcApp/server.R | 4 man/kAnon_violations.Rd |only man/localSuppression.Rd | 4 man/riskyCells.Rd | 35 tests/testthat/test_pram.R |only vignettes/sdcApp.Rmd | 7 vignettes/sdc_guidelines.rnw | 1684 +++-------------- 31 files changed, 1606 insertions(+), 3734 deletions(-)
Title: Convenience Functions for Education Data
Description: Collection of convenience functions to make working with
administrative records easier and more consistent. Includes functions to
clean strings, and identify cut points. Also includes three example data
sets of administrative education records for learning how to process records
with errors.
Author: Jason P. Becker [ctb],
Jared E. Knowles [aut, cre]
Maintainer: Jared E. Knowles <jknowles@gmail.com>
Diff between eeptools versions 1.1.0 dated 2017-06-28 and 1.1.1 dated 2018-01-26
DESCRIPTION | 10 +++--- MD5 | 14 ++++---- NEWS.md | 4 ++ inst/doc/intro.R | 13 +------- inst/doc/intro.Rmd | 24 ++++----------- inst/doc/intro.html | 63 +++++++++++++++------------------------- tests/testthat/test-statamode.r | 8 ++--- vignettes/intro.Rmd | 24 ++++----------- 8 files changed, 61 insertions(+), 99 deletions(-)
Title: Bayesian Methods for Image Segmentation using a Potts Model
Description: Various algorithms for segmentation of 2D and 3D images, such
as computed tomography and satellite remote sensing. This package implements
Bayesian image analysis using the hidden Potts model with external field
prior of <doi:10.1016/j.csda.2014.12.001>.
Latent labels are sampled using chequerboard updating or Swendsen-Wang.
Algorithms for the smoothing parameter include pseudolikelihood, path sampling,
the exchange algorithm, approximate Bayesian computation (ABC-MCMC and ABC-SMC),
and Bayesian indirect likelihood (BIL). Refer to <doi:10.1007/s11222-014-9525-6>
and <arXiv:1503.08066> for further details.
Author: Matt Moores <https://orcid.org/0000-0003-4531-3572> [aut, cre],
Kerrie Mengersen <https://orcid.org/0000-0001-8625-9168> [aut, ths],
Dai Feng [ctb]
Maintainer: Matt Moores <M.T.Moores@warwick.ac.uk>
Diff between bayesImageS versions 0.4-1 dated 2017-10-19 and 0.5-0 dated 2018-01-26
DESCRIPTION | 21 ++++---- MD5 | 19 ++++--- NEWS.md | 21 +++++++- README.md | 12 ++-- build/vignette.rds |binary inst/CITATION |only inst/doc/introduction.pdf |binary src/Makevars | 4 - src/mcmcPotts.cpp | 104 +++++++++++++++++++++-------------------- vignettes/mcmcPotts.html |only vignettes/mcmcPottsNoData.html |only vignettes/refs.bib |only vignettes/swNoData.html |only 13 files changed, 105 insertions(+), 76 deletions(-)
Title: Epistemic Network Analysis
Description: ENA (Shaffer, D. W. (2017) Quantitative Ethnography. ISBN: 0578191687) is a method used to identify meaningful and quantifiable patterns in discourse or reasoning. ENA moves beyond the traditional frequency-based assessments by examining the structure of the co-occurrence, or connections in coded data. Moreover, compared to other methodological approaches, ENA has the novelty of (1) modeling whole networks of connections and (2) affording both quantitative and qualitative comparisons between different network models. Shaffer, D.W., Collier, W., & Ruis, A.R. (2016) <doi:10.18608/jla.2016.33.3>.
Author: Cody L Marquart [aut, cre],
Zachari Swiecki [aut],
Wesley Collier [aut],
Brendan Eagan [aut],
Roman Woodward [aut],
David Williamson Shaffer [aut]
Maintainer: Cody L Marquart <cody.marquart@wisc.edu>
Diff between rENA versions 0.1.2 dated 2018-01-09 and 0.1.3 dated 2018-01-26
DESCRIPTION | 13 +++++++++---- MD5 | 30 ++++++++++++++++++------------ NAMESPACE | 2 ++ R/ENAset.R | 23 ++++------------------- R/RcppExports.R | 6 +++++- R/ena.correlations.R |only R/ena.make.set.R | 2 +- R/ena.plot.network.R | 29 +++++++++++++++++++---------- R/ena.svd.R | 24 ++++++++++-------------- R/lws.positions.sq.R |only R/namesToAdjacencyKey.R |only man/ena.correlations.Rd |only man/ena.make.set.Rd | 2 +- man/ena.plot.network.Rd | 17 +++++++++++------ man/namesToAdjacencyKey.Rd |only src/RcppExports.cpp | 16 +++++++++++++++- src/ena.cpp | 17 +++++++++++------ src/lws_lsq_positions_c.cpp |only src/lws_positions_es_c.cpp | 2 +- 19 files changed, 107 insertions(+), 76 deletions(-)
Title: Wraps the API for the Brazilian Chamber of Deputies
Description: Provides propositions, votings, deputies and parties data from
Brazilian Chamber of Deputies <https://dadosabertos.camara.leg.br> in data frames.
Author: Paulo Vinícius Soares [aut, cre],
Nazareno Andrade [aut],
Laboratório Analytics (UFCG) [cph, fnd]
Maintainer: Paulo Vinícius Soares <paulo.soares@ccc.ufcg.edu.br>
Diff between rcongresso versions 0.3.1 dated 2017-12-13 and 0.3.2 dated 2018-01-26
DESCRIPTION | 6 +-- MD5 | 10 ++--- inst/doc/introducao-rcongresso.html | 12 +++--- inst/doc/purrr-e-rcongresso.html | 4 +- inst/doc/utilizando-fetch-proposicao.html | 58 +++++++++++++++--------------- tests/testthat/test_votacoes.R | 32 ++++++++-------- 6 files changed, 61 insertions(+), 61 deletions(-)
Title: Help for Writing Unit Tests Based on Function Examples
Description: Take the examples written in your documentation of functions and
use them to create shells (skeletons which must be manually completed by
the user) of test files to be tested with the 'testthat' package.
Author: Rory Nolan [aut, cre],
Sergi Padilla-Parra [ths]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between exampletestr versions 1.1.1 dated 2017-12-12 and 1.2.0 dated 2018-01-26
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Title: Open Source OCR Engine
Description: Bindings to 'Tesseract': An OCR engine with unicode (UTF-8) support
that can recognize over 100 languages out of the box.
Author: Jeroen Ooms
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between tesseract versions 1.6 dated 2017-08-14 and 1.8 dated 2018-01-26
DESCRIPTION | 11 ++++++----- MD5 | 26 +++++++++++++------------- NEWS | 8 ++++++++ R/RcppExports.R | 8 ++++---- R/onload.R | 4 +++- R/tessdata.R | 4 +++- R/tesseract.R | 12 ++++++++---- configure | 8 +++++++- man/tessdata.Rd | 1 + man/tesseract.Rd | 11 ++++++++--- src/Makevars.in | 5 +++++ src/RcppExports.cpp | 18 ++++++++++-------- src/tesseract.cpp | 29 ++++++++--------------------- src/tesseract_types.h | 2 ++ 14 files changed, 86 insertions(+), 61 deletions(-)
Title: Hypergeometric Tests
Description: Performs (exact) hypergeometric tests on IxJ and 2x2x2 contingency tables using parallelized C code.
Author: Markus Boenn
Maintainer: Markus Boenn <markus.boenn.sf@googlemail.com>
Diff between hypergea versions 1.3.3 dated 2016-09-10 and 1.3.6 dated 2018-01-26
DESCRIPTION | 10 +++---- MD5 | 13 +++++----- R/hypergea-internal.R | 3 +- R/hypergeom.test.R | 2 + inst/NEWS.Rd | 8 ++++++ src/hypergea_init.c |only src/hypergeom_IxJ.cpp | 64 ++++++-------------------------------------------- tests/runTests.R | 8 ++---- 8 files changed, 35 insertions(+), 73 deletions(-)
Title: Get WHO Tuberculosis Data
Description: Facilitates easy import of analysis ready World Health Organisation Tuberculosis data and provides plotting functions for exploratory data analysis.
Author: Sam Abbott [aut, cre]
Maintainer: Sam Abbott <contact@samabbott.co.uk>
Diff between getTBinR versions 0.5.0 dated 2018-01-05 and 0.5.1 dated 2018-01-26
DESCRIPTION | 11 +-- MD5 | 74 +++++++++++--------- NAMESPACE | 11 +++ NEWS.md | 20 +++++ R/get_data.R | 34 ++++++--- R/get_data_dict.R | 12 +-- R/get_tb_burden.R | 12 ++- R/map_tb_burden.R | 38 ++++++---- R/plot_tb_burden.R | 38 +++++++--- R/plot_tb_burden_overview.R | 50 +++++++++---- R/prepare_df_plot.R | 45 +++++++++++- R/run_tb_dashboard.R |only R/search_data_dict.R | 4 - README.md | 59 ++++++++++++---- build/vignette.rds |binary inst/doc/case_study_global_trends.R |only inst/doc/case_study_global_trends.Rmd |only inst/doc/case_study_global_trends.html |only inst/doc/intro.R | 19 ++++- inst/doc/intro.Rmd | 24 +++++- inst/doc/intro.html | 95 ++++++++++++++------------ inst/shiny |only man/figure/plot-tb-incidence-eur-per-1.png |only man/get_data.Rd | 16 ++-- man/get_data_dict.Rd | 13 ++- man/get_tb_burden.Rd | 13 ++- man/img |only man/map_tb_burden.Rd | 25 ++++-- man/plot_tb_burden.Rd | 32 ++++++-- man/plot_tb_burden_overview.Rd | 24 ++++-- man/prepare_df_plot.Rd | 22 ++++-- man/run_tb_dashboard.Rd |only man/search_data_dict.Rd | 8 +- tests/testthat/test-get_data.R | 32 ++++---- tests/testthat/test-get_data_dict.R | 10 ++ tests/testthat/test-get_tb_burden.R | 8 ++ tests/testthat/test-map_tb_burden.R | 11 ++- tests/testthat/test-plot_tb_burden.R | 14 +++ tests/testthat/test-plot_tb_burden_overview.R | 17 ++++ tests/testthat/test-prepare_df_plot.R | 52 +++++++++++++- vignettes/case_study_global_trends.Rmd |only vignettes/intro.Rmd | 24 +++++- 42 files changed, 630 insertions(+), 237 deletions(-)
Title: Animal Social Network Inference and Permutations for Ecologists
Description: Implements several tools that are used in animal social network analysis. In particular, this package provides the tools to infer groups and generate networks from observation data, perform permutation tests on the data, calculate lagged association rates, and performed multiple regression analysis on social network data.
Author: Damien R. Farine <dfarine@orn.mpg.de>
Maintainer: Damien R. Farine <dfarine@orn.mpg.de>
Diff between asnipe versions 1.1.7 dated 2017-12-06 and 1.1.8 dated 2018-01-26
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ R/get_network.R | 37 +++++++++++++++++++++++++++++++++--- R/get_sampling_periods.R | 45 +++++++++++++++++++++++++++++++++++--------- man/asnipe-package.Rd | 4 +-- man/get_network.Rd | 12 ++++++++--- man/get_sampling_periods.Rd | 11 ++++++++-- 7 files changed, 100 insertions(+), 29 deletions(-)
Title: Download and Process Public Domain Works from Project Gutenberg
Description: Download and process public domain works in the Project
Gutenberg collection <http://www.gutenberg.org/>. Includes metadata for
all Project Gutenberg works, so that they can be searched and retrieved.
Author: David Robinson [aut, cre]
Maintainer: David Robinson <admiral.david@gmail.com>
Diff between gutenbergr versions 0.1.3 dated 2017-06-19 and 0.1.4 dated 2018-01-26
DESCRIPTION | 10 - MD5 | 8 - NEWS.md | 4 README.md | 123 +++++++++++------- inst/doc/intro.html | 339 +++++++++++++++++++++++++--------------------------- 5 files changed, 254 insertions(+), 230 deletions(-)
Title: Create and Investigate Magic Squares
Description: A collection of efficient, vectorized algorithms for the
creation and investigation of magic squares and hypercubes, including
a variety of functions for the manipulation and analysis of
arbitrarily dimensioned arrays. The package includes methods for
creating normal magic squares of any order greater than 2. The
ultimate intention is for the package to be a computerized embodiment
all magic square knowledge, including direct numerical verification
of properties of magic squares (such as recent results on the
determinant of odd-ordered semimagic squares). Some antimagic
functionality is included. The package also
serves as a rebuttal to the often-heard comment "I thought R
was just for statistics".
Author: Robin K. S. Hankin
Maintainer: "Robin K. S. Hankin" <hankin.robin@gmail.com>
Diff between magic versions 1.5-6 dated 2013-11-19 and 1.5-8 dated 2018-01-26
DESCRIPTION | 13 +++++++------ MD5 | 44 ++++++++++++++++++++++---------------------- NAMESPACE | 6 ++++++ R/magic.R | 2 +- build/vignette.rds |binary data/Frankenstein.rda |binary data/Ollerenshaw.rda |binary data/cube2.rda |binary data/hendricks.rda |binary data/magiccubes.rda |binary data/perfectcube5.rda |binary data/perfectcube6.rda |binary inst/CITATION | 7 +++---- inst/doc/magicpaper.Rnw | 10 +++++----- inst/doc/magicpaper.pdf |binary man/arot.Rd | 1 - man/hadamard.Rd | 2 +- man/hendricks.Rd | 1 - man/is.magichypercube.Rd | 30 ++++++++++++++++++------------ man/magiccubes.Rd | 3 --- man/shift.Rd | 2 +- tests/aaa.R | 9 +++++++++ vignettes/magicpaper.Rnw | 10 +++++----- 23 files changed, 78 insertions(+), 62 deletions(-)
Title: Data Frames in R for Make
Description: An R-focused pipeline toolkit
for reproducible code and high-performance computing.
Author: William Michael Landau [aut, cre],
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 4.4.0 dated 2017-11-05 and 5.0.0 dated 2018-01-26
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-08 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-21 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-10-02 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-28 1.2
2014-07-13 1.1
Title: Prepare Reproducible Example Code for Sharing
Description: Convenience wrapper that uses the 'rmarkdown' package to render
small snippets of code to target formats that include both code and output.
The goal is to encourage the sharing of small, reproducible, and runnable
examples on code-oriented websites, such as <http://stackoverflow.com> and
<https://github.com>, or in email. 'reprex' also extracts clean, runnable R
code from various common formats, such as copy/paste from an R session.
Author: Jennifer Bryan [aut, cre],
David Robinson [aut]
Maintainer: ORPHANED
Diff between reprex versions 0.1.1 dated 2017-01-12 and 0.1.2 dated 2018-01-26
DESCRIPTION | 14 ++++++++------ MD5 | 12 ++++++------ R/reprex-undo.R | 6 +++--- R/reprex.R | 9 +++++---- R/utils.R | 10 +++++----- man/reprex.Rd | 4 ++-- tests/testthat/test-input.R | 12 ++++++------ 7 files changed, 35 insertions(+), 32 deletions(-)