Title: Linkage Using Diagnosis Codes
Description: Probabilistic record linkage without direct identifiers using only diagnosis codes.
Author: Boris Hejblum, Tianxi Cai
Maintainer: Boris Hejblum <bhejblum@hsph.harvard.edu>
Diff between ludic versions 0.1.5 dated 2016-12-29 and 0.1.6 dated 2018-01-28
ludic-0.1.5/ludic/NEWS |only ludic-0.1.5/ludic/README |only ludic-0.1.6/ludic/DESCRIPTION | 14 +++-- ludic-0.1.6/ludic/MD5 | 63 ++++++++++++++---------- ludic-0.1.6/ludic/NAMESPACE | 10 +++ ludic-0.1.6/ludic/NEWS.md |only ludic-0.1.6/ludic/R/RA.R |only ludic-0.1.6/ludic/R/RcppExports.R | 28 +++++----- ludic-0.1.6/ludic/R/comb_pvals.R |only ludic-0.1.6/ludic/R/em_winkler.R | 62 +++++++++++++++++------ ludic-0.1.6/ludic/R/logit.R |only ludic-0.1.6/ludic/R/ludic-package.R | 12 ++-- ludic-0.1.6/ludic/R/pval_zscore.R |only ludic-0.1.6/ludic/R/recordLink.R | 49 ++++++++++-------- ludic-0.1.6/ludic/README.md |only ludic-0.1.6/ludic/data |only ludic-0.1.6/ludic/inst/CITATION | 8 +-- ludic-0.1.6/ludic/man/EMstep_C_sparse_big.Rd | 1 ludic-0.1.6/ludic/man/RA.Rd |only ludic-0.1.6/ludic/man/agree_C.Rd | 2 ludic-0.1.6/ludic/man/comb_pvals.Rd |only ludic-0.1.6/ludic/man/em_winkler.Rd | 43 ++++++++++------ ludic-0.1.6/ludic/man/estep_C_vect.Rd | 1 ludic-0.1.6/ludic/man/logit.Rd |only ludic-0.1.6/ludic/man/loglikC_bin.Rd | 5 - ludic-0.1.6/ludic/man/ludic-package.Rd | 17 +++--- ludic-0.1.6/ludic/man/matchProbs_rank_full_C.Rd | 1 ludic-0.1.6/ludic/man/matchingScore_C.Rd | 3 - ludic-0.1.6/ludic/man/matching_score.Rd | 5 - ludic-0.1.6/ludic/man/pval_zscore.Rd |only ludic-0.1.6/ludic/man/recordLink.Rd | 25 ++++----- ludic-0.1.6/ludic/man/strsplitC.Rd | 1 ludic-0.1.6/ludic/src/Makevars | 7 ++ ludic-0.1.6/ludic/src/Makevars.win | 3 - ludic-0.1.6/ludic/src/RcppExports.cpp | 42 +++++++++++----- ludic-0.1.6/ludic/src/loglik_FUN_C.cpp | 4 - ludic-0.1.6/ludic/src/matchingScore_C.cpp | 2 ludic-0.1.6/ludic/tests |only 38 files changed, 247 insertions(+), 161 deletions(-)
Title: Dynamic Model Averaging and Dynamic Model Selection for
Continuous Outcomes
Description: Allows to estimate dynamic model averaging, dynamic model selection and median probability model. The original methods are implemented, as well as, selected further modifications of these methods. In particular the user might choose between recursive moment estimation and exponentially moving average for variance updating. Inclusion probabilities might be modified in a way using 'Google Trends'. The code is written in a way which minimises the computational burden (which is quite an obstacle for dynamic model averaging if many variables are used). For example, this package allows for parallel computations and Occam's window approach. The package is designed in a way that is hoped to be especially useful in economics and finance. Main reference: Raftery, A.E., Karny, M., Ettler, P. (2010) <doi:10.1198/TECH.2009.08104>.
Author: Krzysztof Drachal [aut, cre] (Faculty of Economic Sciences, University
of Warsaw, Poland)
Maintainer: Krzysztof Drachal <kdrachal@wne.uw.edu.pl>
Diff between fDMA versions 2.2.2 dated 2018-01-21 and 2.2.3 dated 2018-01-28
DESCRIPTION | 13 ++++++++----- MD5 | 12 ++++++++---- NEWS | 9 +++++++++ R/altf4.R | 2 +- R/fDMA.R | 4 ++-- build |only inst/doc |only vignettes |only 8 files changed, 28 insertions(+), 12 deletions(-)
Title: R Interface to the Vowpal Wabbit
Description: The 'Vowpal Wabbit' project is a fast out-of-core learning
system sponsored by Microsoft Research (having started at Yahoo! Research)
and written by John Langford along with a number of contributors. This R
package does not include the distributed computing implementation of the
cluster/ directory of the upstream sources. Use of the software as a network
service is also not directly supported as the aim is a simpler direct call
from R for validation and comparison. Note that this package contains an
embedded older version of 'Vowpal Wabbit'. The package 'rvw' at the GitHub
repo <https://github.com/eddelbuettel/rvw> can provide an alternative using
an external 'Vowpal Wabbit' library installation.
Author: Dirk Eddelbuettel <edd@debian.org>
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RVowpalWabbit versions 0.0.10 dated 2017-12-13 and 0.0.11 dated 2018-01-28
ChangeLog | 26 ++++++++++++++++++++------ DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- demo/vw.R | 11 ++++++++--- man/vw.Rd | 3 ++- tests/test1.r | 2 ++ tests/test2.r | 1 + tests/test5.r | 1 + tests/test6.r | 1 + tests/test7.r | 1 + tests/test8.r | 1 + 11 files changed, 51 insertions(+), 24 deletions(-)
Title: Ridge Regression and Other Kernels for Genomic Selection
Description: Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.
Author: Jeffrey Endelman
Maintainer: Jeffrey Endelman <endelman@wisc.edu>
Diff between rrBLUP versions 4.5 dated 2017-06-12 and 4.6 dated 2018-01-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 4 ++++ R/A.mat.R | 10 +++++----- man/A.mat.Rd | 2 +- 5 files changed, 18 insertions(+), 14 deletions(-)
Title: Excursion Sets and Contour Credibility Regions for Random Fields
Description: Functions that compute probabilistic excursion sets, contour credibility regions, contour avoiding regions, and simultaneous confidence bands for latent Gaussian random processes and fields. The package also contains functions that calculate these quantities for models estimated with the INLA package. The main references for excursions are Bolin and Lindgren (2015) <doi:10.1111/rssb.12055> and Bolin and Lindgren (2017) <doi:10.1080/10618600.2016.1228537>. These can be generated by the citation function in R.
Author: David Bolin <davidbolin@gmail.com> and Finn Lindgren <finn.lindgren@gmail.com>
Maintainer: David Bolin <davidbolin@gmail.com>
Diff between excursions versions 2.3.0 dated 2018-01-27 and 2.3.2 dated 2018-01-28
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- inst/CITATION | 42 +++++++++++++++++++++++++++++++++++++----- src/Makevars | 10 ++++++---- 4 files changed, 51 insertions(+), 17 deletions(-)
Title: Call R from R
Description: It is sometimes useful to perform a computation in a
separate R process, without affecting the current R process at all.
This packages does exactly that.
Author: Gábor Csárdi, Winston Chang
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between callr versions 1.0.0 dated 2016-06-18 and 2.0.0 dated 2018-01-28
callr-1.0.0/callr/R/internal.R |only callr-1.0.0/callr/R/system.R |only callr-1.0.0/callr/man/r_safe.Rd |only callr-2.0.0/callr/DESCRIPTION | 22 +-- callr-2.0.0/callr/LICENSE | 2 callr-2.0.0/callr/MD5 | 136 +++++++++++++++---- callr-2.0.0/callr/NAMESPACE | 25 +++ callr-2.0.0/callr/NEWS.md | 32 ++++ callr-2.0.0/callr/R/check.R |only callr-2.0.0/callr/R/error.R |only callr-2.0.0/callr/R/eval-bg.R |only callr-2.0.0/callr/R/eval.R | 132 ++++++++++++------ callr-2.0.0/callr/R/options.R |only callr-2.0.0/callr/R/package.R | 1 callr-2.0.0/callr/R/presets.R | 58 +++----- callr-2.0.0/callr/R/process-assertions.R |only callr-2.0.0/callr/R/process-initialize.R |only callr-2.0.0/callr/R/process-io.R |only callr-2.0.0/callr/R/process-named_pipe.R |only callr-2.0.0/callr/R/process-on-load.R |only callr-2.0.0/callr/R/process-poll.R |only callr-2.0.0/callr/R/process-print.R |only callr-2.0.0/callr/R/process-process-helpers.R |only callr-2.0.0/callr/R/process-process.R |only callr-2.0.0/callr/R/process-run.R |only callr-2.0.0/callr/R/process-supervisor.R |only callr-2.0.0/callr/R/process-utils.R |only callr-2.0.0/callr/R/r-process.R |only callr-2.0.0/callr/R/rcmd-bg.R |only callr-2.0.0/callr/R/rcmd-process.R |only callr-2.0.0/callr/R/rcmd.R | 133 ++++++++++++------ callr-2.0.0/callr/R/result.R |only callr-2.0.0/callr/R/run.R | 62 ++------ callr-2.0.0/callr/R/setup.R |only callr-2.0.0/callr/R/utils.R | 45 ++++-- callr-2.0.0/callr/README.md | 38 ++--- callr-2.0.0/callr/inst |only callr-2.0.0/callr/man/callr.Rd | 1 callr-2.0.0/callr/man/convert_and_check_my_args.Rd |only callr-2.0.0/callr/man/get_result.Rd | 14 + callr-2.0.0/callr/man/make_error.Rd |only callr-2.0.0/callr/man/poll.Rd |only callr-2.0.0/callr/man/process.Rd |only callr-2.0.0/callr/man/process_initialize.Rd |only callr-2.0.0/callr/man/r.Rd | 116 +++++++++++----- callr-2.0.0/callr/man/r_bg.Rd |only callr-2.0.0/callr/man/r_copycat.Rd |only callr-2.0.0/callr/man/r_process.Rd |only callr-2.0.0/callr/man/r_process_options.Rd |only callr-2.0.0/callr/man/r_vanilla.Rd | 32 ++-- callr-2.0.0/callr/man/rcmd.Rd | 69 +++++++-- callr-2.0.0/callr/man/rcmd_bg.Rd |only callr-2.0.0/callr/man/rcmd_copycat.Rd |only callr-2.0.0/callr/man/rcmd_process.Rd |only callr-2.0.0/callr/man/rcmd_process_options.Rd |only callr-2.0.0/callr/man/rcmd_safe.Rd | 68 ++++----- callr-2.0.0/callr/man/run.Rd |only callr-2.0.0/callr/src |only callr-2.0.0/callr/tests/testthat.R | 1 callr-2.0.0/callr/tests/testthat/fixtures |only callr-2.0.0/callr/tests/testthat/helper.R |only callr-2.0.0/callr/tests/testthat/test-assertions.R |only callr-2.0.0/callr/tests/testthat/test-chr-io.R |only callr-2.0.0/callr/tests/testthat/test-cleanup.R |only callr-2.0.0/callr/tests/testthat/test-connections.R |only callr-2.0.0/callr/tests/testthat/test-cpp.R |only callr-2.0.0/callr/tests/testthat/test-error.R | 14 - callr-2.0.0/callr/tests/testthat/test-eval.R | 30 ++++ callr-2.0.0/callr/tests/testthat/test-io.R |only callr-2.0.0/callr/tests/testthat/test-options.R |only callr-2.0.0/callr/tests/testthat/test-poll.R |only callr-2.0.0/callr/tests/testthat/test-poll2.R |only callr-2.0.0/callr/tests/testthat/test-presets.R | 5 callr-2.0.0/callr/tests/testthat/test-print.R |only callr-2.0.0/callr/tests/testthat/test-process.R |only callr-2.0.0/callr/tests/testthat/test-r-bg.R |only callr-2.0.0/callr/tests/testthat/test-r-process.R |only callr-2.0.0/callr/tests/testthat/test-rcmd-bg.R |only callr-2.0.0/callr/tests/testthat/test-rcmd-process.R |only callr-2.0.0/callr/tests/testthat/test-rcmd.R | 45 ++++-- callr-2.0.0/callr/tests/testthat/test-run.R |only callr-2.0.0/callr/tests/testthat/test-stress.R |only callr-2.0.0/callr/tests/testthat/test-timeout.R |only callr-2.0.0/callr/tests/testthat/test-utils.R | 101 +++++++++++++- callr-2.0.0/callr/tests/testthat/test-wait.R |only 85 files changed, 811 insertions(+), 371 deletions(-)
Title: Estimation of the Structural Topic Model
Description: The Structural Topic Model (STM) allows researchers
to estimate topic models with document-level covariates.
The package also includes tools for model selection, visualization,
and estimation of topic-covariate regressions. Methods developed in
Roberts et al (2014) <doi:10.1111/ajps.12103> and
Roberts et al (2016) <doi:10.1080/01621459.2016.1141684>.
Author: Margaret Roberts [aut, cre],
Brandon Stewart [aut, cre],
Dustin Tingley [aut, cre],
Kenneth Benoit [ctb]
Maintainer: Brandon Stewart <bms4@princeton.edu>
Diff between stm versions 1.3.0 dated 2017-09-09 and 1.3.3 dated 2018-01-28
DESCRIPTION | 12 +++--- MD5 | 76 +++++++++++++++++++------------------- NAMESPACE | 1 R/RcppExports.R | 6 +-- R/STMfunctions.R | 2 - R/STMinit.R | 4 +- R/asSTMCorpus.R | 2 - R/estimateEffect.R | 8 ++++ R/heldout.R | 14 +++++-- R/prepDocuments.R | 7 +++ R/produce_cmatrix.R | 11 ++++- R/residuals.R | 5 ++ R/searchK.R | 58 +++++++++++++++++------------ R/semanticCoherence.R | 8 +++- R/spectral.R | 55 ++++++++++++++++++--------- R/stm.R | 29 ++++++++++++-- R/stm.control.R | 4 +- R/thetaPosterior.R | 6 ++- R/toLDAvis.R | 6 ++- R/topicCorr.R | 6 ++- R/topicQuality.R | 6 ++- R/zzz.R | 2 - build/vignette.rds |binary data/gadarian.RData |binary data/gadarianFit.RData |binary data/poliblog5k.RData |binary inst/NEWS.Rd | 17 ++++++++ inst/doc/stmVignette.pdf |binary man/make.heldout.Rd | 2 - man/plot.topicCorr.Rd | 4 +- man/prepDocuments.Rd | 7 +++ man/searchK.Rd | 11 +++++ man/semanticCoherence.Rd | 2 - man/stm.Rd | 22 +++++++++-- man/toLDAvis.Rd | 5 ++ man/topicQuality.Rd | 2 - src/RcppExports.cpp | 12 +++--- src/STMCfuns.cpp | 3 + tests/testthat/test-stm-options.R | 11 +++++ 39 files changed, 299 insertions(+), 127 deletions(-)
Title: Succinct and Correct Statistical Summaries for Reports
Description: Succinctly and correctly format statistical summaries of
various models and tests (F-test, Chi-Sq-test, Fisher-test, T-test, and rank-significance). The main purpose is unified reporting and planning
of experimental results, working around issue such as the difficulty of
extracting model summary facts (such as with 'lm'/'glm'). This package also
includes empirical tests, such as bootstrap estimates.
Author: John Mount [aut, cre],
Nina Zumel [aut],
Win-Vector LLC [cph]
Maintainer: John Mount <jmount@win-vector.com>
Diff between sigr versions 0.2.2 dated 2017-10-22 and 0.2.3 dated 2018-01-28
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/sigr.R | 5 ++++- build/vignette.rds |binary inst/doc/lmExample.html | 4 ++-- inst/doc/sigrFormatting.html | 4 ++-- 8 files changed, 24 insertions(+), 16 deletions(-)
Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including 'ADCP'
measurements, measurements made with 'argo' floats, 'CTD' measurements,
sectional data, sea-level time series, coastline and topographic data, etc.
Provides specialized functions for calculating seawater properties such as
potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state.
Produces graphical displays that conform to the conventions of the Oceanographic
literature.
Author: Dan Kelley [aut, cre],
Clark Richards [aut],
Chantelle Layton [ctb] (curl() coauthor),
British Geological Survey [ctb, cph] (magnetic-field subroutine)
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>
Diff between oce versions 0.9-22 dated 2017-08-28 and 0.9-23 dated 2018-01-28
oce-0.9-22/oce/src/bisect.c |only oce-0.9-23/oce/DESCRIPTION | 6 oce-0.9-23/oce/MD5 | 509 +++++++------- oce-0.9-23/oce/NAMESPACE | 1 oce-0.9-23/oce/NEWS | 6 oce-0.9-23/oce/R/AllClass.R | 5 oce-0.9-23/oce/R/adp.R | 66 - oce-0.9-23/oce/R/adp.nortek.R | 3 oce-0.9-23/oce/R/adp.rdi.R | 62 + oce-0.9-23/oce/R/adp.sontek.R | 8 oce-0.9-23/oce/R/adv.R | 44 - oce-0.9-23/oce/R/adv.nortek.R | 4 oce-0.9-23/oce/R/adv.sontek.R | 26 oce-0.9-23/oce/R/air.R | 2 oce-0.9-23/oce/R/amsr.R | 21 oce-0.9-23/oce/R/argo.R | 89 +- oce-0.9-23/oce/R/bremen.R | 9 oce-0.9-23/oce/R/cm.R | 18 oce-0.9-23/oce/R/coastline.R | 44 - oce-0.9-23/oce/R/ctd.R | 395 ++++++---- oce-0.9-23/oce/R/ctd.sbe.R | 92 +- oce-0.9-23/oce/R/echosounder.R | 32 oce-0.9-23/oce/R/g1sst.R | 2 oce-0.9-23/oce/R/geod.R | 4 oce-0.9-23/oce/R/gps.R | 3 oce-0.9-23/oce/R/imagep.R | 47 - oce-0.9-23/oce/R/index.R | 6 oce-0.9-23/oce/R/ladp.R | 3 oce-0.9-23/oce/R/landsat.R | 13 oce-0.9-23/oce/R/lisst.R | 5 oce-0.9-23/oce/R/lobo.R | 34 oce-0.9-23/oce/R/map.R | 524 ++++++++++---- oce-0.9-23/oce/R/met.R | 78 +- oce-0.9-23/oce/R/misc.R | 49 - oce-0.9-23/oce/R/moon.R | 2 oce-0.9-23/oce/R/oce.R | 375 +++++----- oce-0.9-23/oce/R/odf.R | 122 ++- oce-0.9-23/oce/R/rsk.R | 51 - oce-0.9-23/oce/R/satellite.R | 3 oce-0.9-23/oce/R/sealevel.R | 30 oce-0.9-23/oce/R/section.R | 193 +++-- oce-0.9-23/oce/R/sw.R | 286 ++++--- oce-0.9-23/oce/R/tides.R | 618 +++++++++++++---- oce-0.9-23/oce/R/topo.R | 22 oce-0.9-23/oce/R/windrose.R | 5 oce-0.9-23/oce/build/vignette.rds |binary oce-0.9-23/oce/data/coastlineWorld.rda |binary oce-0.9-23/oce/data/ctd.rda |binary oce-0.9-23/oce/data/ctdRaw.rda |binary oce-0.9-23/oce/data/sealevelTuktoyaktuk.rda |binary oce-0.9-23/oce/inst/doc/oce.R | 130 +++ oce-0.9-23/oce/inst/doc/oce.Rmd | 227 +++++- oce-0.9-23/oce/inst/doc/oce.html | 400 ++++++++--- oce-0.9-23/oce/man/ODFNames2oceNames.Rd | 6 oce-0.9-23/oce/man/adp-class.Rd | 2 oce-0.9-23/oce/man/adpEnsembleAverage.Rd | 9 oce-0.9-23/oce/man/adv-class.Rd | 2 oce-0.9-23/oce/man/amsr-class.Rd | 4 oce-0.9-23/oce/man/argo-class.Rd | 3 oce-0.9-23/oce/man/as.cm.Rd | 2 oce-0.9-23/oce/man/as.ctd.Rd | 57 + oce-0.9-23/oce/man/as.echosounder.Rd | 2 oce-0.9-23/oce/man/as.lobo.Rd | 2 oce-0.9-23/oce/man/as.section.Rd | 15 oce-0.9-23/oce/man/beamToXyzAdp.Rd | 2 oce-0.9-23/oce/man/beamUnspreadAdp.Rd | 2 oce-0.9-23/oce/man/cnvName2oceName.Rd | 22 oce-0.9-23/oce/man/coastlineWorld.Rd | 5 oce-0.9-23/oce/man/ctdAddColumn.Rd | 2 oce-0.9-23/oce/man/ctdDecimate.Rd | 2 oce-0.9-23/oce/man/ctdFindProfiles.Rd | 19 oce-0.9-23/oce/man/decimate.Rd | 2 oce-0.9-23/oce/man/decodeHeaderNortek.Rd | 2 oce-0.9-23/oce/man/download.amsr.Rd | 18 oce-0.9-23/oce/man/download.coastline.Rd | 14 oce-0.9-23/oce/man/download.met.Rd | 14 oce-0.9-23/oce/man/download.topo.Rd | 19 oce-0.9-23/oce/man/echosounder-class.Rd | 2 oce-0.9-23/oce/man/echosounder.Rd | 2 oce-0.9-23/oce/man/eclipticalToEquatorial.Rd | 2 oce-0.9-23/oce/man/findInOrdered.Rd | 14 oce-0.9-23/oce/man/formatCI.Rd | 2 oce-0.9-23/oce/man/geodDist.Rd | 2 oce-0.9-23/oce/man/geodXyInverse.Rd | 2 oce-0.9-23/oce/man/handleFlags-argo-method.Rd | 10 oce-0.9-23/oce/man/handleFlags-ctd-method.Rd | 10 oce-0.9-23/oce/man/handleFlags-section-method.Rd | 10 oce-0.9-23/oce/man/handleFlags.Rd | 13 oce-0.9-23/oce/man/imagep.Rd | 26 oce-0.9-23/oce/man/integrateTrapezoid.Rd | 4 oce-0.9-23/oce/man/interpBarnes.Rd | 2 oce-0.9-23/oce/man/landsat-class.Rd | 2 oce-0.9-23/oce/man/landsat.Rd | 4 oce-0.9-23/oce/man/lisst.Rd | 2 oce-0.9-23/oce/man/lonlat2map.Rd | 13 oce-0.9-23/oce/man/lonlat2utm.Rd | 2 oce-0.9-23/oce/man/map2lonlat.Rd | 2 oce-0.9-23/oce/man/mapArrows.Rd | 2 oce-0.9-23/oce/man/mapAxis.Rd | 4 oce-0.9-23/oce/man/mapContour.Rd | 2 oce-0.9-23/oce/man/mapCoordinateSystem.Rd | 6 oce-0.9-23/oce/man/mapDirectionField.Rd | 2 oce-0.9-23/oce/man/mapGrid.Rd | 2 oce-0.9-23/oce/man/mapImage.Rd | 17 oce-0.9-23/oce/man/mapLines.Rd | 2 oce-0.9-23/oce/man/mapLocator.Rd | 2 oce-0.9-23/oce/man/mapLongitudeLatitudeXY.Rd | 3 oce-0.9-23/oce/man/mapPlot.Rd | 63 + oce-0.9-23/oce/man/mapPoints.Rd | 3 oce-0.9-23/oce/man/mapPolygon.Rd | 3 oce-0.9-23/oce/man/mapScalebar.Rd | 3 oce-0.9-23/oce/man/mapText.Rd | 3 oce-0.9-23/oce/man/mapTissot.Rd | 3 oce-0.9-23/oce/man/numberAsPOSIXct.Rd | 7 oce-0.9-23/oce/man/oce-deprecated.Rd | 38 - oce-0.9-23/oce/man/oce.colorsTwo.Rd | 2 oce-0.9-23/oce/man/oce.grid.Rd | 2 oce-0.9-23/oce/man/oce.plot.ts.Rd | 24 oce-0.9-23/oce/man/oceApprox.Rd | 2 oce-0.9-23/oce/man/oceCRS.Rd | 3 oce-0.9-23/oce/man/oceEdit.Rd | 44 - oce-0.9-23/oce/man/plot-adp-method.Rd | 21 oce-0.9-23/oce/man/plot-adv-method.Rd | 34 oce-0.9-23/oce/man/plot-amsr-method.Rd | 3 oce-0.9-23/oce/man/plot-argo-method.Rd | 36 oce-0.9-23/oce/man/plot-bremen-method.Rd | 5 oce-0.9-23/oce/man/plot-cm-method.Rd | 1 oce-0.9-23/oce/man/plot-coastline-method.Rd | 8 oce-0.9-23/oce/man/plot-ctd-method.Rd | 34 oce-0.9-23/oce/man/plot-echosounder-method.Rd | 27 oce-0.9-23/oce/man/plot-gps-method.Rd | 1 oce-0.9-23/oce/man/plot-ladp-method.Rd | 1 oce-0.9-23/oce/man/plot-landsat-method.Rd | 1 oce-0.9-23/oce/man/plot-lisst-method.Rd | 1 oce-0.9-23/oce/man/plot-lobo-method.Rd | 25 oce-0.9-23/oce/man/plot-met-method.Rd | 1 oce-0.9-23/oce/man/plot-oce-method.Rd | 1 oce-0.9-23/oce/man/plot-odf-method.Rd | 32 oce-0.9-23/oce/man/plot-rsk-method.Rd | 23 oce-0.9-23/oce/man/plot-satellite-method.Rd | 1 oce-0.9-23/oce/man/plot-sealevel-method.Rd | 21 oce-0.9-23/oce/man/plot-section-method.Rd | 38 - oce-0.9-23/oce/man/plot-tidem-method.Rd | 1 oce-0.9-23/oce/man/plot-topo-method.Rd | 1 oce-0.9-23/oce/man/plot-windrose-method.Rd | 3 oce-0.9-23/oce/man/plotProfile.Rd | 37 - oce-0.9-23/oce/man/plotSticks.Rd | 6 oce-0.9-23/oce/man/plotTS.Rd | 14 oce-0.9-23/oce/man/read.adp.rdi.Rd | 6 oce-0.9-23/oce/man/read.adp.sontek.Rd | 2 oce-0.9-23/oce/man/read.adp.sontek.serial.Rd | 6 oce-0.9-23/oce/man/read.adv.Rd | 6 oce-0.9-23/oce/man/read.adv.nortek.Rd | 4 oce-0.9-23/oce/man/read.adv.sontek.adr.Rd | 4 oce-0.9-23/oce/man/read.adv.sontek.serial.Rd | 7 oce-0.9-23/oce/man/read.adv.sontek.text.Rd | 4 oce-0.9-23/oce/man/read.bremen.Rd | 2 oce-0.9-23/oce/man/read.ctd.sbe.Rd | 27 oce-0.9-23/oce/man/read.echosounder.Rd | 4 oce-0.9-23/oce/man/read.g1sst.Rd | 2 oce-0.9-23/oce/man/read.index.Rd | 6 oce-0.9-23/oce/man/read.landsat.Rd | 4 oce-0.9-23/oce/man/read.odf.Rd | 7 oce-0.9-23/oce/man/read.topo.Rd | 2 oce-0.9-23/oce/man/rsk2ctd.Rd | 17 oce-0.9-23/oce/man/sealevelTuktoyaktuk.Rd | 8 oce-0.9-23/oce/man/section-class.Rd | 2 oce-0.9-23/oce/man/sectionSmooth.Rd | 2 oce-0.9-23/oce/man/shiftLongitude.Rd | 5 oce-0.9-23/oce/man/sub-sub-adp-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-adv-method.Rd | 20 oce-0.9-23/oce/man/sub-sub-amsr-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-argo-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-bremen-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-cm-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-coastline-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-ctd-method.Rd | 22 oce-0.9-23/oce/man/sub-sub-echosounder-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-g1sst-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-gps-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-ladp-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-lisst-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-lobo-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-met-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-odf-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-rsk-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-sealevel-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-section-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-tidem-method.Rd | 28 oce-0.9-23/oce/man/sub-sub-topo-method.Rd | 18 oce-0.9-23/oce/man/sub-sub-windrose-method.Rd | 18 oce-0.9-23/oce/man/sub-subset-adp-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-adv-method.Rd | 18 oce-0.9-23/oce/man/sub-subset-amsr-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-argo-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-bremen-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-cm-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-coastline-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-ctd-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-echosounder-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-g1sst-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-gps-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-lisst-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-lobo-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-met-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-oce-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-odf-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-rsk-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-sealevel-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-section-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-tidem-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-topo-method.Rd | 2 oce-0.9-23/oce/man/sub-subset-windrose-method.Rd | 2 oce-0.9-23/oce/man/swAlphaOverBeta.Rd | 2 oce-0.9-23/oce/man/swCSTp.Rd | 12 oce-0.9-23/oce/man/swSCTp.Rd | 2 oce-0.9-23/oce/man/swSigmaTheta.Rd | 2 oce-0.9-23/oce/man/swSpice.Rd | 2 oce-0.9-23/oce/man/swTheta.Rd | 2 oce-0.9-23/oce/man/swViscosity.Rd | 2 oce-0.9-23/oce/man/tidem.Rd | 119 ++- oce-0.9-23/oce/man/tidemAstron.Rd | 6 oce-0.9-23/oce/man/tidemVuf.Rd | 2 oce-0.9-23/oce/man/usrLonLat.Rd |only oce-0.9-23/oce/man/utm2lonlat.Rd | 3 oce-0.9-23/oce/man/wind.Rd | 2 oce-0.9-23/oce/man/xyzToEnuAdv.Rd | 2 oce-0.9-23/oce/src/amsr.c | 12 oce-0.9-23/oce/src/map.c | 220 ++++++ oce-0.9-23/oce/tests/testthat/test_accessors.R | 17 oce-0.9-23/oce/tests/testthat/test_allclass.R | 11 oce-0.9-23/oce/tests/testthat/test_coastline.R | 2 oce-0.9-23/oce/tests/testthat/test_ctd.R | 84 +- oce-0.9-23/oce/tests/testthat/test_datasets.R | 2 oce-0.9-23/oce/tests/testthat/test_landsat.R | 12 oce-0.9-23/oce/tests/testthat/test_lisst.R | 2 oce-0.9-23/oce/tests/testthat/test_local_adp.R | 6 oce-0.9-23/oce/tests/testthat/test_local_adv.R | 12 oce-0.9-23/oce/tests/testthat/test_local_cm.R | 4 oce-0.9-23/oce/tests/testthat/test_local_ctd.R | 18 oce-0.9-23/oce/tests/testthat/test_local_echosounder.R | 2 oce-0.9-23/oce/tests/testthat/test_local_gps.R | 4 oce-0.9-23/oce/tests/testthat/test_local_odf.R | 2 oce-0.9-23/oce/tests/testthat/test_local_plotProfile.R |only oce-0.9-23/oce/tests/testthat/test_local_satellite.R | 2 oce-0.9-23/oce/tests/testthat/test_map.R | 2 oce-0.9-23/oce/tests/testthat/test_met.R | 23 oce-0.9-23/oce/tests/testthat/test_misc.R | 46 + oce-0.9-23/oce/tests/testthat/test_oce.R | 4 oce-0.9-23/oce/tests/testthat/test_rsk.R | 2 oce-0.9-23/oce/tests/testthat/test_section.R | 49 + oce-0.9-23/oce/tests/testthat/test_sw.R | 41 - oce-0.9-23/oce/tests/testthat/test_tidem.R | 152 +++- oce-0.9-23/oce/tests/testthat/test_webtide.R | 15 oce-0.9-23/oce/tests/testthat/tide_foreman.dat.gz |only oce-0.9-23/oce/tests/testthat/tide_ttide.dat.gz |only oce-0.9-23/oce/tests/tide3.dat.gz |binary oce-0.9-23/oce/vignettes/oce.Rmd | 227 +++++- 258 files changed, 4817 insertions(+), 2559 deletions(-)
Title: Subset- And Name-Aware Array Utility Functions
Description: Stacking arrays according to dimension names, subset-aware
splitting and mapping of functions, intersecting along arbitrary
dimensions, converting to and from data.frames, and many other helper
functions.
Author: Michael Schubert <mschu.dev@gmail.com>
Maintainer: Michael Schubert <mschu.dev@gmail.com>
Diff between narray versions 0.3.2 dated 2017-11-12 and 0.4.0 dated 2018-01-28
narray-0.3.2/narray/R/map_simple.r |only narray-0.3.2/narray/R/summarize.r |only narray-0.3.2/narray/R/vectors_to_row_or_col.r |only narray-0.3.2/narray/man/summarize.Rd |only narray-0.3.2/narray/tests/testthat/test-summarize.r |only narray-0.4.0/narray/DESCRIPTION | 8 narray-0.4.0/narray/MD5 | 70 +-- narray-0.4.0/narray/NAMESPACE | 3 narray-0.4.0/narray/R/bind.r | 42 +- narray-0.4.0/narray/R/construct.r | 41 - narray-0.4.0/narray/R/flatten.r | 11 narray-0.4.0/narray/R/intersect.r | 2 narray-0.4.0/narray/R/lambda.r |only narray-0.4.0/narray/R/map.r | 45 +- narray-0.4.0/narray/R/match.r | 22 - narray-0.4.0/narray/R/stack.r | 13 narray-0.4.0/narray/R/subset.r | 4 narray-0.4.0/narray/R/translate.r |only narray-0.4.0/narray/R/util.r |only narray-0.4.0/narray/build/vignette.rds |binary narray-0.4.0/narray/inst/doc/narray.R | 20 narray-0.4.0/narray/inst/doc/narray.Rmd | 48 +- narray-0.4.0/narray/inst/doc/narray.html | 416 +++++++++++++++----- narray-0.4.0/narray/man/bind.Rd | 6 narray-0.4.0/narray/man/construct.Rd | 7 narray-0.4.0/narray/man/drop_if.Rd |only narray-0.4.0/narray/man/flatten.Rd | 6 narray-0.4.0/narray/man/grapes-or-grapes.Rd | 6 narray-0.4.0/narray/man/guess_structure.Rd |only narray-0.4.0/narray/man/lambda.Rd |only narray-0.4.0/narray/man/map.Rd | 2 narray-0.4.0/narray/man/map_simple.Rd | 2 narray-0.4.0/narray/man/named_dots.Rd |only narray-0.4.0/narray/man/restore_null_dimnames.Rd |only narray-0.4.0/narray/man/stack.Rd | 4 narray-0.4.0/narray/man/subset.Rd | 2 narray-0.4.0/narray/man/translate.Rd |only narray-0.4.0/narray/man/vectors_to_row_or_col.Rd | 2 narray-0.4.0/narray/tests/testthat/test-construct.r | 24 - narray-0.4.0/narray/tests/testthat/test-lambda.r |only narray-0.4.0/narray/tests/testthat/test-map.r | 15 narray-0.4.0/narray/tests/testthat/test-stack.r | 12 narray-0.4.0/narray/tests/testthat/test-translate.r |only narray-0.4.0/narray/vignettes/narray.Rmd | 48 +- 44 files changed, 587 insertions(+), 294 deletions(-)
Title: Create Compact Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation
of hash digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256',
'crc32', 'xxhash' and 'murmurhash' algorithms) permitting easy comparison of R
language objects, as well as a function 'hmac()' to create hash-based
message authentication code. Please note that this package is not meant to
be deployed for cryptographic purposes for which more comprehensive (and
widely tested) libraries such as 'OpenSSL' should be used.
Author: Dirk Eddelbuettel <edd@debian.org> with contributions
by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek,
Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen,
Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx,
Michel Lang, Viliam Simko and Kurt Hornik.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between digest versions 0.6.14 dated 2018-01-14 and 0.6.15 dated 2018-01-28
ChangeLog | 15 +++ DESCRIPTION | 10 +- MD5 | 20 ++-- NAMESPACE | 1 R/sha1.R | 250 ++++++++++++++++++++++++----------------------------- inst/doc/sha1.R | 8 - inst/doc/sha1.Rmd | 8 - inst/doc/sha1.html | 12 +- man/sha1.rd | 53 ++++++----- tests/sha1Test.R | 22 ++++ vignettes/sha1.Rmd | 8 - 11 files changed, 221 insertions(+), 186 deletions(-)
Title: Bayesian Continual Reassessment Method for Phase I
Dose-Escalation Trials
Description: Implements a wide variety of one and two-parameter Bayesian CRM
designs. The program can run interactively, allowing the user to enter outcomes
after each cohort has been recruited, or via simulation to assess operating
characteristics.
Author: Michael Sweeting
Maintainer: Michael Sweeting <mjs212@medschl.cam.ac.uk>
Diff between bcrm versions 0.4.6 dated 2015-11-20 and 0.4.7 dated 2018-01-28
bcrm-0.4.6/bcrm/R/bcrm_0.4.6.R |only bcrm-0.4.7/bcrm/DESCRIPTION | 10 +++++----- bcrm-0.4.7/bcrm/MD5 | 14 +++++++------- bcrm-0.4.7/bcrm/NEWS | 8 ++++++++ bcrm-0.4.7/bcrm/R/bcrm_0.4.7.R |only bcrm-0.4.7/bcrm/man/bcrm-package.Rd | 4 ++-- bcrm-0.4.7/bcrm/man/bcrm.Rd | 23 +++++++++++++++-------- bcrm-0.4.7/bcrm/man/plot.bcrm.Rd | 2 +- bcrm-0.4.7/bcrm/man/threep3.Rd | 2 +- 9 files changed, 39 insertions(+), 24 deletions(-)
Title: Easy Interface for Clustering a Set of Documents and Exploring
Group- Based Patterns
Description: Provides an interface to perform cluster analysis on a corpus of
text. Interfaces to Quanteda to assemble text corpuses easily. Deviationalizes
text vectors prior to clustering using technique described by Sherin (Sherin,
B. [2013]. A computational study of commonsense science: An exploration in the
automated analysis of clinical interview data. Journal of the Learning Sciences,
22(4), 600-638. Chicago. <doi:10.1080/10508406.2013.836654>). Uses
cosine similarity as distance metric for two stage clustering process, involving
Ward's algorithm hierarchical agglomerative clustering, and k-means clustering.
Selects optimal number of clusters to maximize "variance explained" by clusters,
adjusted by the number of clusters. Provides plotted output of clustering
results as well as printed output. Assesses "model fit" of clustering solution
to a set of preexisting groups in dataset.
Author: Joshua Rosenberg, Alex Lishinski
Maintainer: Alex Lishinski <alexlishinski@gmail.com>
Diff between clustRcompaR versions 0.1.0 dated 2017-01-06 and 0.2.0 dated 2018-01-28
DESCRIPTION | 36 +++++---- MD5 | 37 ++++++---- NAMESPACE | 1 NEWS.md |only R/clustRcompaR.R | 70 ++++++++++++++++-- R/clustRcompaR_background.R | 22 ++++- README.md | 98 +++++++++++++++++++++----- build/vignette.rds |binary data |only inst/doc/introduction-to-clustRcompaR.R |only inst/doc/introduction-to-clustRcompaR.Rmd | 31 ++++++++ inst/doc/introduction-to-clustRcompaR.html | 107 +++++++++++++++++++++++++++-- man/assemble_corpus.Rd | 4 - man/clean_dfm.Rd | 2 man/cluster.Rd | 22 +++++ man/compare.Rd | 19 ++++- man/extract_terms.Rd |only man/figures |only man/inaugural_addresses.Rd |only tests |only vignettes/1-11-2018.Rdata |only vignettes/introduction-to-clustRcompaR.Rmd | 31 ++++++++ vignettes/rsconnect |only 23 files changed, 410 insertions(+), 70 deletions(-)
Title: Create Interactive Chart with the JavaScript 'Billboard' Library
Description: Provides an 'htmlwidgets' interface to 'billboard.js',
a re-usable easy interface JavaScript chart library, based on D3 v4+.
Chart types include line charts, scatterplots, bar/lollipop charts, histogram/density plots, pie/donut charts and gauge charts.
All charts are interactive, and a proxy method is implemented to smoothly update a chart without rendering it again in 'shiny' apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
NAVER Corp [cph] (billboard library)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between billboarder versions 0.1.0 dated 2017-10-20 and 0.2.1 dated 2018-01-28
DESCRIPTION | 10 - MD5 | 47 ++--- NAMESPACE | 4 NEWS.md | 9 R/bb_helpers.R | 75 +++++++- R/bb_utils.R | 27 ++ R/billboard-mapping.R | 15 + R/billboarder-shiny.R | 165 ++++++++++++++++++ build/vignette.rds |binary inst/doc/billboarder-intro.html | 102 +++++------ inst/doc/billboarder-mapping.Rmd | 2 inst/doc/billboarder-mapping.html | 48 ++--- inst/doc/billboarder-options.html | 88 ++++----- inst/htmlwidgets/billboarder.js | 65 ++++++- inst/htmlwidgets/billboarder.yaml | 8 inst/htmlwidgets/lib/D3-4.10.0/d3.v4.min.js | 2 inst/htmlwidgets/lib/D3-4.12.2 |only inst/htmlwidgets/lib/billboard-1.0.1/LICENSE.txt | 42 ++-- inst/htmlwidgets/lib/billboard-1.0.1/billboard.min.js | 20 +- inst/htmlwidgets/lib/billboard-1.1.1/billboard.min.js | 20 +- inst/htmlwidgets/lib/billboard-1.2.0 |only man/bb_bubble.Rd |only man/bb_proxy_data_colors.Rd |only man/bb_proxy_data_names.Rd |only man/billboard-aes.Rd | 10 - vignettes/billboarder-mapping.Rmd | 2 26 files changed, 556 insertions(+), 205 deletions(-)
Title: Analysis and Presentation of Social Scientific Data
Description: This is a collection of tools that the author (Jacob) has written
for the purpose of more efficiently understanding and sharing the results of
(primarily) regression analyses. There are a number of functions focused
specifically on the interpretation and presentation of interactions in linear
models. Just about everything supports models from the survey package.
Author: Jacob A. Long [aut, cre] (<https://orcid.org/0000-0002-1582-6214>)
Maintainer: Jacob A. Long <long.1377@osu.edu>
Diff between jtools versions 0.9.1 dated 2018-01-05 and 0.9.3 dated 2018-01-28
DESCRIPTION | 8 MD5 | 58 +- NEWS.md | 23 R/export_summ.R | 6 R/ggplot2-exts.R | 10 R/gscale.R | 6 R/johnson_neyman.R | 35 + R/simple_slopes.R | 7 README.md | 336 +++++++------- inst/CITATION | 2 inst/doc/categorical.html | 366 ++++++++++++--- inst/doc/interactions.html | 496 ++++++++++++++------- inst/doc/summ.Rmd | 2 inst/doc/summ.html | 460 ++++++++++++++----- inst/doc/svycor.html | 340 +++++++++++--- man/export_summs.Rd | 5 man/ggplot2-exts.Rd | 9 tests/testthat/Rplots.pdf |binary tests/testthat/test-export-summs.R | 6 tests/testthat/test-gscale.R | 2 tests/testthat/test-jsumm.R | 15 tests/testthat/test-misc.R | 19 tools/README-interact_plot_continuous-1.png |binary tools/README-interact_plot_continuous_points-1.png |binary tools/README-interact_plot_factor-1.png |binary tools/README-j-n-plot-1.png |binary tools/README-theme_apa_ex-1.png |binary tools/README-unnamed-chunk-7-1.png |binary tools/README-unnamed-chunk-8-1.png |binary vignettes/summ.Rmd | 2 30 files changed, 1587 insertions(+), 626 deletions(-)
Title: Get the Category of Content Hosted by a Domain
Description: Get the category of content hosted by a domain. Use Shallalist <http://shalla.de/>,
Virustotal (which provides access to lots of services) <https://www.virustotal.com/>,
McAfee <https://www.trustedsource.org/>, Alexa <https://aws.amazon.com/awis/>,
DMOZ <http://www.dmoz.org/>, or validated machine learning classifiers based on
Shallalist data to learn about the kind of content hosted by a domain.
Author: Gaurav Sood [aut, cre]
Maintainer: Gaurav Sood <gsood07@gmail.com>
Diff between rdomains versions 0.1.5 dated 2016-11-02 and 0.1.7 dated 2018-01-28
DESCRIPTION | 12 ++--- MD5 | 69 ++++++++++++++++++---------------- NAMESPACE | 9 ++++ NEWS.md | 10 ++++ R/adult_ml1_cat.R | 69 +++++++++++++++++----------------- R/alexa_cat.R | 20 +++++---- R/brightcloud_cat.R |only R/data.R | 2 R/dmoz_cat.R | 70 +++++++++++++++++++++------------- R/get_alexa_data.R | 26 ++++++------ R/get_dmoz_data.R | 38 +++++++++++------- R/get_shalla_data.R | 79 ++++++++++++++++++++------------------- R/not_news.R |only R/rdomains.R | 6 +- R/shalla_cat.R | 52 +++++++++++++------------ R/trusted_cat.R | 48 ++++++++++++----------- R/virustotal_cat.R | 52 +++++++++++++------------ README.md | 15 +++---- build/vignette.rds |binary inst/doc/rdomains.html | 29 ++++++++------ man/adult_ml1_cat.Rd | 3 - man/alexa_cat.Rd | 3 - man/brightcloud_cat.Rd |only man/dmoz_cat.Rd | 5 -- man/get_alexa_data.Rd | 1 man/get_dmoz_data.Rd | 5 -- man/get_shalla_data.Rd | 4 - man/glm_shalla.Rd | 1 man/not_news.Rd |only man/rdomains-package.Rd | 7 +-- man/shalla_cat.Rd | 5 -- man/trusted_cat.Rd | 1 man/virustotal_cat.Rd | 1 tests/testthat.R | 2 tests/testthat/test-dmoz-cat.R | 7 +-- tests/testthat/test-ml-cat.R | 5 -- tests/testthat/test-pkg-style.R |only tests/testthat/test-shalla-cat.R | 7 +-- 38 files changed, 363 insertions(+), 300 deletions(-)
Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and ngrams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [aut, cre, cph],
Kohei Watanabe [ctb],
Paul Nulty [ctb],
Adam Obeng [ctb],
Haiyan Wang [ctb],
Stefan Müller [ctb],
Benjamin Lauderdale [ctb],
Will Lowe [ctb]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 0.99.22 dated 2017-11-13 and 1.0.0 dated 2018-01-28
quanteda-0.99.22/quanteda/R/textmodel-generics.R |only quanteda-0.99.22/quanteda/R/textmodel-internal.R |only quanteda-0.99.22/quanteda/R/textmodel_wordshoal.R |only quanteda-0.99.22/quanteda/data/data_char_stopwords.rda |only quanteda-0.99.22/quanteda/inst/doc/quickstart.R |only quanteda-0.99.22/quanteda/inst/doc/quickstart.Rmd |only quanteda-0.99.22/quanteda/inst/doc/quickstart.html |only quanteda-0.99.22/quanteda/man/coef.textmodel.Rd |only quanteda-0.99.22/quanteda/man/collocations.Rd |only quanteda-0.99.22/quanteda/man/predict.textmodel.Rd |only quanteda-0.99.22/quanteda/man/stopwords.Rd |only quanteda-0.99.22/quanteda/man/syllables.Rd |only quanteda-0.99.22/quanteda/man/textmodel-internal.Rd |only quanteda-0.99.22/quanteda/man/textmodel.Rd |only quanteda-0.99.22/quanteda/man/textmodel_fitted-class.Rd |only quanteda-0.99.22/quanteda/src/sequences_mt_.cpp |only quanteda-0.99.22/quanteda/src/tokens_kwic_mt.cpp |only quanteda-0.99.22/quanteda/tests/data/data_spacy_parsed.RData |only quanteda-0.99.22/quanteda/tests/testthat/test-plots.R |only quanteda-0.99.22/quanteda/vignettes/mystyle.css |only quanteda-0.99.22/quanteda/vignettes/quickstart.Rmd |only quanteda-1.0.0/quanteda/DESCRIPTION | 46 quanteda-1.0.0/quanteda/MD5 | 573 +++++---- quanteda-1.0.0/quanteda/NAMESPACE | 227 +++ quanteda-1.0.0/quanteda/NEWS.md | 34 quanteda-1.0.0/quanteda/R/RcppExports.R | 48 quanteda-1.0.0/quanteda/R/bootstrap_dfm.R | 10 quanteda-1.0.0/quanteda/R/casechange-functions.R | 70 - quanteda-1.0.0/quanteda/R/character-methods.R | 5 quanteda-1.0.0/quanteda/R/convert.R | 283 ++-- quanteda-1.0.0/quanteda/R/corpus-methods-base.R | 35 quanteda-1.0.0/quanteda/R/corpus-methods-quanteda.R | 27 quanteda-1.0.0/quanteda/R/corpus.R | 73 - quanteda-1.0.0/quanteda/R/corpus_reshape.R | 27 quanteda-1.0.0/quanteda/R/corpus_sample.R | 10 quanteda-1.0.0/quanteda/R/corpus_segment.R | 61 - quanteda-1.0.0/quanteda/R/corpus_subset.R | 11 quanteda-1.0.0/quanteda/R/corpus_trim.R | 35 quanteda-1.0.0/quanteda/R/corpuszip.R | 19 quanteda-1.0.0/quanteda/R/data-deprecated.R | 2 quanteda-1.0.0/quanteda/R/data-documentation.R | 45 quanteda-1.0.0/quanteda/R/defunct-functions.R |only quanteda-1.0.0/quanteda/R/dfm-classes.R | 80 - quanteda-1.0.0/quanteda/R/dfm-methods.R | 51 quanteda-1.0.0/quanteda/R/dfm-print.R | 83 - quanteda-1.0.0/quanteda/R/dfm.R | 75 - quanteda-1.0.0/quanteda/R/dfm_compress.R | 54 quanteda-1.0.0/quanteda/R/dfm_group.R | 36 quanteda-1.0.0/quanteda/R/dfm_lookup.R | 41 quanteda-1.0.0/quanteda/R/dfm_replace.R |only quanteda-1.0.0/quanteda/R/dfm_sample.R | 16 quanteda-1.0.0/quanteda/R/dfm_select.R | 103 - quanteda-1.0.0/quanteda/R/dfm_sort.R |only quanteda-1.0.0/quanteda/R/dfm_subset.R | 30 quanteda-1.0.0/quanteda/R/dfm_trim.R | 223 +-- quanteda-1.0.0/quanteda/R/dfm_weight.R | 577 ++++----- quanteda-1.0.0/quanteda/R/dictionaries.R | 101 + quanteda-1.0.0/quanteda/R/docnames.R | 13 quanteda-1.0.0/quanteda/R/docvars.R | 38 quanteda-1.0.0/quanteda/R/fcm-methods.R | 57 quanteda-1.0.0/quanteda/R/fcm.R | 92 - quanteda-1.0.0/quanteda/R/kwic.R | 74 - quanteda-1.0.0/quanteda/R/nfunctions.R | 96 - quanteda-1.0.0/quanteda/R/nscrabble.R | 11 quanteda-1.0.0/quanteda/R/nsyllable.R | 99 - quanteda-1.0.0/quanteda/R/phrases.R | 9 quanteda-1.0.0/quanteda/R/quanteda-documentation.R | 8 quanteda-1.0.0/quanteda/R/quanteda_options.R | 59 quanteda-1.0.0/quanteda/R/regex2fixed.R | 49 quanteda-1.0.0/quanteda/R/spacyr-methods.R | 4 quanteda-1.0.0/quanteda/R/stopwords.R | 77 - quanteda-1.0.0/quanteda/R/textmodel-methods.R |only quanteda-1.0.0/quanteda/R/textmodel_affinity.R |only quanteda-1.0.0/quanteda/R/textmodel_ca.R | 116 - quanteda-1.0.0/quanteda/R/textmodel_lsa.R |only quanteda-1.0.0/quanteda/R/textmodel_nb.R | 280 ++-- quanteda-1.0.0/quanteda/R/textmodel_wordfish.R | 350 +++-- quanteda-1.0.0/quanteda/R/textmodel_wordscores.R | 473 +++---- quanteda-1.0.0/quanteda/R/textplot_influence.R |only quanteda-1.0.0/quanteda/R/textplot_keyness.R | 113 + quanteda-1.0.0/quanteda/R/textplot_network.R |only quanteda-1.0.0/quanteda/R/textplot_scale1d.R | 194 ++- quanteda-1.0.0/quanteda/R/textplot_wordcloud.R | 33 quanteda-1.0.0/quanteda/R/textplot_xray.R | 47 quanteda-1.0.0/quanteda/R/textstat-methods.R |only quanteda-1.0.0/quanteda/R/textstat_collocations.R | 185 +-- quanteda-1.0.0/quanteda/R/textstat_dist.R | 357 +++-- quanteda-1.0.0/quanteda/R/textstat_frequency.R | 63 - quanteda-1.0.0/quanteda/R/textstat_keyness.R | 142 +- quanteda-1.0.0/quanteda/R/textstat_lexdiv.R | 115 - quanteda-1.0.0/quanteda/R/textstat_readability.R | 596 +++++----- quanteda-1.0.0/quanteda/R/textstat_simil.R | 392 +++--- quanteda-1.0.0/quanteda/R/tokens.R | 53 quanteda-1.0.0/quanteda/R/tokens_compound.R | 13 quanteda-1.0.0/quanteda/R/tokens_group.R | 27 quanteda-1.0.0/quanteda/R/tokens_lookup.R | 23 quanteda-1.0.0/quanteda/R/tokens_ngrams.R | 27 quanteda-1.0.0/quanteda/R/tokens_replace.R | 30 quanteda-1.0.0/quanteda/R/tokens_segment.R | 2 quanteda-1.0.0/quanteda/R/tokens_select.R | 18 quanteda-1.0.0/quanteda/R/tokens_subset.R |only quanteda-1.0.0/quanteda/R/utils.R | 40 quanteda-1.0.0/quanteda/R/wordstem.R | 21 quanteda-1.0.0/quanteda/README.md | 78 - quanteda-1.0.0/quanteda/build/vignette.rds |binary quanteda-1.0.0/quanteda/data/data_corpus_dailnoconf1991.rda |only quanteda-1.0.0/quanteda/data/data_dfm_LBGexample.rda |binary quanteda-1.0.0/quanteda/data/datalist |only quanteda-1.0.0/quanteda/inst/doc/design.R |only quanteda-1.0.0/quanteda/inst/doc/design.Rmd |only quanteda-1.0.0/quanteda/inst/doc/design.html |only quanteda-1.0.0/quanteda/man/affinity.Rd |only quanteda-1.0.0/quanteda/man/as.coefficients_textmodel.Rd |only quanteda-1.0.0/quanteda/man/as.corpus.Rd | 3 quanteda-1.0.0/quanteda/man/as.corpus.corpuszip.Rd | 5 quanteda-1.0.0/quanteda/man/as.dictionary.Rd | 10 quanteda-1.0.0/quanteda/man/as.dist.dist.Rd | 2 quanteda-1.0.0/quanteda/man/as.list.dist.Rd | 4 quanteda-1.0.0/quanteda/man/as.list.dist_selection.Rd | 2 quanteda-1.0.0/quanteda/man/as.matrix.dfm.Rd | 2 quanteda-1.0.0/quanteda/man/as.matrix.dist_selection.Rd | 2 quanteda-1.0.0/quanteda/man/as.statistics_textmodel.Rd |only quanteda-1.0.0/quanteda/man/as.summary.textmodel.Rd |only quanteda-1.0.0/quanteda/man/as.tokens.Rd | 2 quanteda-1.0.0/quanteda/man/as.yaml.Rd | 2 quanteda-1.0.0/quanteda/man/attributes-set.Rd | 4 quanteda-1.0.0/quanteda/man/bootstrap_dfm.Rd | 2 quanteda-1.0.0/quanteda/man/cbind.dfm.Rd | 20 quanteda-1.0.0/quanteda/man/char_tolower.Rd | 2 quanteda-1.0.0/quanteda/man/coef.textmodel_ca.Rd |only quanteda-1.0.0/quanteda/man/convert-wrappers.Rd | 25 quanteda-1.0.0/quanteda/man/convert.Rd | 23 quanteda-1.0.0/quanteda/man/corpus-class.Rd | 2 quanteda-1.0.0/quanteda/man/corpus.Rd | 2 quanteda-1.0.0/quanteda/man/corpus_reshape.Rd | 6 quanteda-1.0.0/quanteda/man/corpus_sample.Rd | 2 quanteda-1.0.0/quanteda/man/corpus_segment.Rd | 7 quanteda-1.0.0/quanteda/man/corpus_subset.Rd | 4 quanteda-1.0.0/quanteda/man/corpus_trim.Rd | 4 quanteda-1.0.0/quanteda/man/corpus_trimsentences.Rd | 10 quanteda-1.0.0/quanteda/man/create.Rd | 4 quanteda-1.0.0/quanteda/man/data-deprecated.Rd | 2 quanteda-1.0.0/quanteda/man/data-internal.Rd | 30 quanteda-1.0.0/quanteda/man/data_char_sampletext.Rd | 3 quanteda-1.0.0/quanteda/man/data_char_ukimmig2010.Rd | 2 quanteda-1.0.0/quanteda/man/data_corpus_dailnoconf1991.Rd |only quanteda-1.0.0/quanteda/man/dfm-class.Rd | 20 quanteda-1.0.0/quanteda/man/dfm-internal.Rd | 2 quanteda-1.0.0/quanteda/man/dfm.Rd | 5 quanteda-1.0.0/quanteda/man/dfm2lsa.Rd | 5 quanteda-1.0.0/quanteda/man/dfm_compress.Rd | 2 quanteda-1.0.0/quanteda/man/dfm_group.Rd | 2 quanteda-1.0.0/quanteda/man/dfm_lookup.Rd | 5 quanteda-1.0.0/quanteda/man/dfm_replace.Rd |only quanteda-1.0.0/quanteda/man/dfm_sample.Rd | 2 quanteda-1.0.0/quanteda/man/dfm_select.Rd | 54 quanteda-1.0.0/quanteda/man/dfm_sort.Rd | 8 quanteda-1.0.0/quanteda/man/dfm_subset.Rd | 14 quanteda-1.0.0/quanteda/man/dfm_tfidf.Rd |only quanteda-1.0.0/quanteda/man/dfm_tolower.Rd | 2 quanteda-1.0.0/quanteda/man/dfm_trim.Rd | 61 - quanteda-1.0.0/quanteda/man/dfm_weight.Rd | 86 - quanteda-1.0.0/quanteda/man/dictionary-class.Rd | 2 quanteda-1.0.0/quanteda/man/dictionary.Rd | 5 quanteda-1.0.0/quanteda/man/docfreq.Rd | 56 quanteda-1.0.0/quanteda/man/docnames.Rd | 2 quanteda-1.0.0/quanteda/man/docvars.Rd | 2 quanteda-1.0.0/quanteda/man/escape_regex.Rd | 2 quanteda-1.0.0/quanteda/man/fcm.Rd | 47 quanteda-1.0.0/quanteda/man/fcm_sort.Rd | 2 quanteda-1.0.0/quanteda/man/featnames.Rd | 2 quanteda-1.0.0/quanteda/man/friendly_class_undefined_message.Rd |only quanteda-1.0.0/quanteda/man/generate_groups.Rd |only quanteda-1.0.0/quanteda/man/groups.Rd | 2 quanteda-1.0.0/quanteda/man/head.corpus.Rd | 8 quanteda-1.0.0/quanteda/man/head.dfm.Rd | 24 quanteda-1.0.0/quanteda/man/influence.predict.textmodel_affinity.Rd |only quanteda-1.0.0/quanteda/man/is.dfm.Rd | 2 quanteda-1.0.0/quanteda/man/is_regex.Rd | 4 quanteda-1.0.0/quanteda/man/keyness.Rd | 15 quanteda-1.0.0/quanteda/man/kwic.Rd | 16 quanteda-1.0.0/quanteda/man/list2dictionary.Rd | 2 quanteda-1.0.0/quanteda/man/merge_dictionary_values.Rd | 4 quanteda-1.0.0/quanteda/man/metacorpus.Rd | 4 quanteda-1.0.0/quanteda/man/metadoc.Rd | 2 quanteda-1.0.0/quanteda/man/ndoc.Rd | 22 quanteda-1.0.0/quanteda/man/nest_dictionary.Rd | 4 quanteda-1.0.0/quanteda/man/nscrabble.Rd | 2 quanteda-1.0.0/quanteda/man/nsentence.Rd | 2 quanteda-1.0.0/quanteda/man/nsyllable.Rd | 2 quanteda-1.0.0/quanteda/man/ntoken.Rd | 2 quanteda-1.0.0/quanteda/man/pattern.Rd | 2 quanteda-1.0.0/quanteda/man/pattern2id.Rd | 4 quanteda-1.0.0/quanteda/man/phrase.Rd | 2 quanteda-1.0.0/quanteda/man/predict.textmodel_affinity.Rd |only quanteda-1.0.0/quanteda/man/predict.textmodel_nb.Rd |only quanteda-1.0.0/quanteda/man/predict.textmodel_wordfish.Rd |only quanteda-1.0.0/quanteda/man/predict.textmodel_wordscores.Rd |only quanteda-1.0.0/quanteda/man/print.coefficients_textmodel.Rd |only quanteda-1.0.0/quanteda/man/print.dfm.Rd | 14 quanteda-1.0.0/quanteda/man/print.dist_selection.Rd | 2 quanteda-1.0.0/quanteda/man/print.phrases.Rd | 2 quanteda-1.0.0/quanteda/man/print.statistics_textmodel.Rd |only quanteda-1.0.0/quanteda/man/print.summary.textmodel.Rd |only quanteda-1.0.0/quanteda/man/print.textmodel_wordfish.Rd |only quanteda-1.0.0/quanteda/man/quanteda-package.Rd | 5 quanteda-1.0.0/quanteda/man/quanteda_options.Rd | 47 quanteda-1.0.0/quanteda/man/reexports.Rd | 18 quanteda-1.0.0/quanteda/man/regex2id.Rd | 15 quanteda-1.0.0/quanteda/man/remove_empty_keys.Rd | 4 quanteda-1.0.0/quanteda/man/replace_dictionary_values.Rd | 4 quanteda-1.0.0/quanteda/man/scrabble.Rd | 2 quanteda-1.0.0/quanteda/man/slots-set.Rd | 4 quanteda-1.0.0/quanteda/man/spacyr-methods.Rd | 2 quanteda-1.0.0/quanteda/man/sparsity.Rd | 2 quanteda-1.0.0/quanteda/man/summary.character.Rd | 2 quanteda-1.0.0/quanteda/man/summary.corpus.Rd | 2 quanteda-1.0.0/quanteda/man/summary.textmodel_nb.Rd |only quanteda-1.0.0/quanteda/man/summary.textmodel_wordfish.Rd |only quanteda-1.0.0/quanteda/man/textmodel_affinity-internal.Rd |only quanteda-1.0.0/quanteda/man/textmodel_affinity.Rd |only quanteda-1.0.0/quanteda/man/textmodel_ca.Rd | 29 quanteda-1.0.0/quanteda/man/textmodel_lsa-postestimation.Rd |only quanteda-1.0.0/quanteda/man/textmodel_lsa.Rd |only quanteda-1.0.0/quanteda/man/textmodel_nb.Rd | 58 quanteda-1.0.0/quanteda/man/textmodel_wordfish.Rd | 43 quanteda-1.0.0/quanteda/man/textmodel_wordscores.Rd | 48 quanteda-1.0.0/quanteda/man/textmodel_wordshoal.Rd | 64 - quanteda-1.0.0/quanteda/man/textplot_influence.Rd |only quanteda-1.0.0/quanteda/man/textplot_keyness.Rd | 2 quanteda-1.0.0/quanteda/man/textplot_network.Rd |only quanteda-1.0.0/quanteda/man/textplot_scale1d.Rd | 25 quanteda-1.0.0/quanteda/man/textplot_wordcloud.Rd | 22 quanteda-1.0.0/quanteda/man/textplot_xray.Rd | 4 quanteda-1.0.0/quanteda/man/texts.Rd | 7 quanteda-1.0.0/quanteda/man/textstat_collocations.Rd | 21 quanteda-1.0.0/quanteda/man/textstat_frequency.Rd | 5 quanteda-1.0.0/quanteda/man/textstat_keyness.Rd | 5 quanteda-1.0.0/quanteda/man/textstat_lexdiv.Rd | 19 quanteda-1.0.0/quanteda/man/textstat_readability.Rd | 17 quanteda-1.0.0/quanteda/man/textstat_select.Rd |only quanteda-1.0.0/quanteda/man/textstat_simil.Rd | 22 quanteda-1.0.0/quanteda/man/tf.Rd | 52 quanteda-1.0.0/quanteda/man/tfidf.Rd | 65 - quanteda-1.0.0/quanteda/man/tokens.Rd | 2 quanteda-1.0.0/quanteda/man/tokens_compound.Rd | 2 quanteda-1.0.0/quanteda/man/tokens_group.Rd | 5 quanteda-1.0.0/quanteda/man/tokens_lookup.Rd | 8 quanteda-1.0.0/quanteda/man/tokens_ngrams.Rd | 2 quanteda-1.0.0/quanteda/man/tokens_replace.Rd | 2 quanteda-1.0.0/quanteda/man/tokens_segment.Rd | 2 quanteda-1.0.0/quanteda/man/tokens_select.Rd | 4 quanteda-1.0.0/quanteda/man/tokens_subset.Rd |only quanteda-1.0.0/quanteda/man/tokens_tolower.Rd | 2 quanteda-1.0.0/quanteda/man/tokens_wordstem.Rd | 2 quanteda-1.0.0/quanteda/man/topfeatures.Rd | 7 quanteda-1.0.0/quanteda/man/types.Rd | 2 quanteda-1.0.0/quanteda/man/valuetype.Rd | 2 quanteda-1.0.0/quanteda/src/Makevars | 5 quanteda-1.0.0/quanteda/src/Makevars.win | 8 quanteda-1.0.0/quanteda/src/RcppExports.cpp | 148 +- quanteda-1.0.0/quanteda/src/armadillo.h | 4 quanteda-1.0.0/quanteda/src/ca_mt.cpp | 93 - quanteda-1.0.0/quanteda/src/collocations_mt_.cpp |only quanteda-1.0.0/quanteda/src/dist_mt.cpp | 259 ++-- quanteda-1.0.0/quanteda/src/fcm_mt.cpp | 59 quanteda-1.0.0/quanteda/src/kwic_mt.cpp |only quanteda-1.0.0/quanteda/src/quanteda.h | 34 quanteda-1.0.0/quanteda/src/wordfish_dense.cpp | 105 - quanteda-1.0.0/quanteda/src/wordfish_mt.cpp | 128 +- quanteda-1.0.0/quanteda/tests/cheatsheet |only quanteda-1.0.0/quanteda/tests/data/Dail_noconfidence.zip |only quanteda-1.0.0/quanteda/tests/data/data_char_stopwords.rda |only quanteda-1.0.0/quanteda/tests/data/data_spacy_parsed.rda |only quanteda-1.0.0/quanteda/tests/data_creation/create_data_dailnoconf.R |only quanteda-1.0.0/quanteda/tests/testthat/test-as.dictionary.R | 7 quanteda-1.0.0/quanteda/tests/testthat/test-bootstrap.R | 1 quanteda-1.0.0/quanteda/tests/testthat/test-casechanges.R | 11 quanteda-1.0.0/quanteda/tests/testthat/test-convert.R | 40 quanteda-1.0.0/quanteda/tests/testthat/test-corpus-compress.R | 7 quanteda-1.0.0/quanteda/tests/testthat/test-corpus.R | 2 quanteda-1.0.0/quanteda/tests/testthat/test-corpus_reshape.R | 15 quanteda-1.0.0/quanteda/tests/testthat/test-default-methods.R |only quanteda-1.0.0/quanteda/tests/testthat/test-dfm.R | 140 ++ quanteda-1.0.0/quanteda/tests/testthat/test-dfm_lookup.R | 57 quanteda-1.0.0/quanteda/tests/testthat/test-dfm_replace.R |only quanteda-1.0.0/quanteda/tests/testthat/test-dfm_subset.R | 2 quanteda-1.0.0/quanteda/tests/testthat/test-dfm_trim.R | 39 quanteda-1.0.0/quanteda/tests/testthat/test-dfm_weight.R | 204 ++- quanteda-1.0.0/quanteda/tests/testthat/test-dictionaries.R | 1 quanteda-1.0.0/quanteda/tests/testthat/test-docnames.R | 1 quanteda-1.0.0/quanteda/tests/testthat/test-docvars.R | 6 quanteda-1.0.0/quanteda/tests/testthat/test-fcm.R | 34 quanteda-1.0.0/quanteda/tests/testthat/test-kwic.R | 63 - quanteda-1.0.0/quanteda/tests/testthat/test-nfunctions.R | 7 quanteda-1.0.0/quanteda/tests/testthat/test-phrases.R | 4 quanteda-1.0.0/quanteda/tests/testthat/test-quanteda_options.R | 8 quanteda-1.0.0/quanteda/tests/testthat/test-regex2fixed.R | 20 quanteda-1.0.0/quanteda/tests/testthat/test-spacyr-methods.R | 4 quanteda-1.0.0/quanteda/tests/testthat/test-stopwords.R | 45 quanteda-1.0.0/quanteda/tests/testthat/test-textmodel_affinity.R |only quanteda-1.0.0/quanteda/tests/testthat/test-textmodel_ca.R | 34 quanteda-1.0.0/quanteda/tests/testthat/test-textmodel_lsa.R |only quanteda-1.0.0/quanteda/tests/testthat/test-textmodel_wordfish.R | 129 -- quanteda-1.0.0/quanteda/tests/testthat/test-textmodel_wordscores.R | 162 +- quanteda-1.0.0/quanteda/tests/testthat/test-textplot.R |only quanteda-1.0.0/quanteda/tests/testthat/test-textstat.R |only quanteda-1.0.0/quanteda/tests/testthat/test-textstat_collocations.R | 117 + quanteda-1.0.0/quanteda/tests/testthat/test-textstat_dist.R | 32 quanteda-1.0.0/quanteda/tests/testthat/test-textstat_frequency.R | 17 quanteda-1.0.0/quanteda/tests/testthat/test-textstat_keyness.R | 41 quanteda-1.0.0/quanteda/tests/testthat/test-textstat_lexdiv.R | 36 quanteda-1.0.0/quanteda/tests/testthat/test-textstat_readability.R | 41 quanteda-1.0.0/quanteda/tests/testthat/test-textstat_simil.R | 36 quanteda-1.0.0/quanteda/tests/testthat/test-tokens.R | 33 quanteda-1.0.0/quanteda/tests/testthat/test-tokens_compound.R | 8 quanteda-1.0.0/quanteda/tests/testthat/test-tokens_group.R | 15 quanteda-1.0.0/quanteda/tests/testthat/test-tokens_lookup.R | 46 quanteda-1.0.0/quanteda/tests/testthat/test-tokens_ngrams.R | 8 quanteda-1.0.0/quanteda/tests/testthat/test-tokens_subset.R |only quanteda-1.0.0/quanteda/tests/testthat/test-utils.R | 95 - quanteda-1.0.0/quanteda/tests/testthat/test-wordstem.R | 2 quanteda-1.0.0/quanteda/vignettes/design.Rmd |only 323 files changed, 6064 insertions(+), 5310 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-19 1.55
2013-12-06 1.53
2013-11-13 1.41
2013-06-06 1.14
2013-04-23 1.8
Title: Multiple, Unpacking, and Destructuring Assignment
Description: Provides a %<-% operator to perform multiple,
unpacking, and destructuring assignment in R. The
operator unpacks the right-hand side of an assignment
into multiple values and assigns these values to
variables on the left-hand side of the assignment.
Author: Nathan Teetor [aut, cre],
Paul Teetor [ctb]
Maintainer: Nathan Teetor <nathanteetor@gmail.com>
Diff between zeallot versions 0.0.6 dated 2017-09-28 and 0.1.0 dated 2018-01-28
DESCRIPTION | 6 MD5 | 24 NEWS.md | 21 R/operator.R | 14 R/pair-off.R | 6 R/utils.R | 16 build/vignette.rds |binary inst/doc/unpacking-assignment.Rmd | 10 inst/doc/unpacking-assignment.html | 1007 ++++++++++++++++++++++--------------- tests/testthat/test-operator.R | 10 tests/testthat/test-pair-off.R | 6 tests/testthat/test-utils.R | 5 vignettes/unpacking-assignment.Rmd | 10 13 files changed, 686 insertions(+), 449 deletions(-)
Title: L2 Penalized Logistic Regression with Stepwise Variable
Selection
Description: L2 penalized logistic regression for both continuous and discrete predictors, with forward stagewise/forward stepwise variable selection procedure.
Author: Mee Young Park, Trevor Hastie
Maintainer: Mee Young Park <meeyoung@google.com>
Diff between stepPlr versions 0.92 dated 2009-12-20 and 0.93 dated 2018-01-28
DESCRIPTION | 18 +- MD5 |only NAMESPACE | 11 + R/internal.R | 6 R/step.plr.R | 18 +- man/cv.step.plr.Rd | 12 - man/plr-internal.Rd | 10 - man/plr.Rd | 14 +- man/predict.plr.Rd | 36 ++--- man/predict.stepplr.Rd | 24 +-- man/step.plr.Rd | 24 +-- src/cg_descent.f | 334 ++++++++++++++++++++++++------------------------- src/stepPlr_init.c |only 13 files changed, 256 insertions(+), 251 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Some custom inputs widgets to use in Shiny applications, like a toggle switch to replace checkboxes. And other components to pimp your apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Silvio Moreto [ctb, cph] (bootstrap-select),
Ana Carolina [ctb, cph] (bootstrap-select),
caseyjhol [ctb, cph] (bootstrap-select),
Matt Bryson [ctb, cph] (bootstrap-select),
t0xicCode [ctb, cph] (bootstrap-select),
Mattia Larentis [ctb, cph] (Bootstrap Switch),
Emanuele Marchi [ctb, cph] (Bootstrap Switch),
Mark Otto [ctb] (Bootstrap library),
Jacob Thornton [ctb] (Bootstrap library),
Bootstrap contributors [ctb] (Bootstrap library),
Twitter, Inc [cph] (Bootstrap library),
Flatlogic [cph] (Awesome Bootstrap Checkbox),
mouse0270 [ctb, cph] (Material Design Switch),
Tristan Edwards [ctb, cph] (SweetAlert),
Fabian Lindfors [ctb, cph] (multi.js),
David Granjon [ctb] (jQuery Knob shiny interface),
Anthony Terrien [ctb, cph] (jQuery Knob),
Daniel Eden [ctb, cph] (animate.css),
Ganapati V S [ctb, cph] (bttn.css),
Brian Grinstead [ctb, cph] (Spectrum),
Lokesh Rajendran [ctb, cph] (pretty-checkbox)
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.4.0 dated 2017-11-16 and 0.4.1 dated 2018-01-28
shinyWidgets-0.4.0/shinyWidgets/inst/www/circleButton/circle-button-old.css |only shinyWidgets-0.4.1/shinyWidgets/DESCRIPTION | 8 shinyWidgets-0.4.1/shinyWidgets/MD5 | 62 + shinyWidgets-0.4.1/shinyWidgets/NAMESPACE | 7 shinyWidgets-0.4.1/shinyWidgets/NEWS.md | 18 shinyWidgets-0.4.1/shinyWidgets/R/attachShinyWidgetsDep.R | 13 shinyWidgets-0.4.1/shinyWidgets/R/input-awesomeradio.R | 13 shinyWidgets-0.4.1/shinyWidgets/R/input-circlebutton.R | 2 shinyWidgets-0.4.1/shinyWidgets/R/input-dropdown.R | 60 + shinyWidgets-0.4.1/shinyWidgets/R/input-multi.R | 40 + shinyWidgets-0.4.1/shinyWidgets/R/input-pretty.R | 2 shinyWidgets-0.4.1/shinyWidgets/R/input-search.R | 19 shinyWidgets-0.4.1/shinyWidgets/R/input-sliderText.R | 2 shinyWidgets-0.4.1/shinyWidgets/R/sweetalert.R | 347 +++++++++- shinyWidgets-0.4.1/shinyWidgets/inst/examples/pretty |only shinyWidgets-0.4.1/shinyWidgets/inst/examples/shinyWidgets/server.R | 20 shinyWidgets-0.4.1/shinyWidgets/inst/examples/shinyWidgets/ui.R | 12 shinyWidgets-0.4.1/shinyWidgets/inst/www/circleButton/circle-button.css | 2 shinyWidgets-0.4.1/shinyWidgets/inst/www/dropdown/dropdown-click.js | 10 shinyWidgets-0.4.1/shinyWidgets/inst/www/multi/multi.min.css | 2 shinyWidgets-0.4.1/shinyWidgets/inst/www/multi/multi.min.js | 4 shinyWidgets-0.4.1/shinyWidgets/inst/www/shinyWidgets.css | 114 ++- shinyWidgets-0.4.1/shinyWidgets/inst/www/shinyWidgets.min.css | 2 shinyWidgets-0.4.1/shinyWidgets/inst/www/sweetAlert/sweetalert-bindings.js |only shinyWidgets-0.4.1/shinyWidgets/inst/www/sweetAlert/sweetalert.min.js |only shinyWidgets-0.4.1/shinyWidgets/inst/www/uglify.R | 4 shinyWidgets-0.4.1/shinyWidgets/man/awesomeRadio.Rd | 12 shinyWidgets-0.4.1/shinyWidgets/man/closeSweetAlert.Rd |only shinyWidgets-0.4.1/shinyWidgets/man/confirmSweetAlert.Rd |only shinyWidgets-0.4.1/shinyWidgets/man/dropdownButton.Rd | 8 shinyWidgets-0.4.1/shinyWidgets/man/inputSweetAlert.Rd |only shinyWidgets-0.4.1/shinyWidgets/man/multiInput.Rd | 40 + shinyWidgets-0.4.1/shinyWidgets/man/progressSweetAlert.Rd |only shinyWidgets-0.4.1/shinyWidgets/man/sendSweetAlert.Rd |only shinyWidgets-0.4.1/shinyWidgets/man/toggleDropdownButton.Rd |only shinyWidgets-0.4.1/shinyWidgets/man/updatePrettyRadioButtons.Rd | 2 shinyWidgets-0.4.1/shinyWidgets/man/useSweetAlert.Rd | 50 - 37 files changed, 662 insertions(+), 213 deletions(-)
Title: Project MOSAIC Data Sets
Description: Data sets from Project MOSAIC (<http://mosaic-web.org>) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel Kaplan
<kaplan@macalester.edu>, Nicholas Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaicData versions 0.14.0 dated 2016-06-17 and 0.16.0 dated 2018-01-28
DESCRIPTION | 12 MD5 | 81 ++- NEWS.md | 14 R/BirthsDoc.R | 2 R/GoosePermitsDoc.R | 4 R/Weather.R |only R/datasetsDoc.R | 1071 ++++++++++++++++++++++++++------------------------ data/Births2015.rda |only data/HELPmiss.rda |binary data/HELPrct.rda |binary data/RailTrail.rda |binary data/Weather.rda |only data/datalist | 2 man/Alcohol.Rd | 9 man/Birthdays.Rd | 1 man/Births.Rd | 4 man/Births2015.Rd |only man/Births78.Rd | 4 man/CPS85.Rd | 1 man/Cards.Rd | 1 man/CoolingWater.Rd | 1 man/Countries.Rd | 13 man/Dimes.Rd | 1 man/Galton.Rd | 1 man/Gestation.Rd | 18 man/GoosePermits.Rd | 2 man/HELPfull.Rd | 977 ++++++++++++++++++++++----------------------- man/HELPmiss.Rd | 7 man/HELPrct.Rd | 3 man/HeatX.Rd | 3 man/KidsFeet.Rd | 1 man/Marriage.Rd | 3 man/Mites.Rd | 1 man/RailTrail.Rd | 4 man/Riders.Rd | 1 man/SAT.Rd | 1 man/SaratogaHouses.Rd | 1 man/SnowGR.Rd | 1 man/SwimRecords.Rd | 1 man/TenMileRace.Rd | 1 man/Utilities.Rd | 3 man/Utilities2.Rd | 3 man/Weather.Rd |only man/Whickham.Rd | 1 44 files changed, 1149 insertions(+), 1105 deletions(-)
Title: Conducts Mokken Scale Analysis
Description: Contains functions for performing Mokken
scale analysis on test and questionnaire data (e.g., Sijtsma and Van der Ark, 2017, <doi:10.1111/bmsp.12078>).
It includes an automated item selection algorithm, and various checks of model assumptions.
Author: L. Andries van der Ark <L.A.vanderArk@uva.nl>
Maintainer: L. Andries van der Ark <L.A.vanderArk@uva.nl>
Diff between mokken versions 2.8.9 dated 2017-11-02 and 2.8.10 dated 2018-01-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/MLweight.R | 17 +++++++++-------- inst/doc/GettingStartedWithMokken.pdf |binary man/mokken-package.Rd | 6 +++--- 5 files changed, 20 insertions(+), 19 deletions(-)
Title: Bindings to Selected 'liblwgeom' Functions for Simple Features
Description: Access to selected functions found in 'liblwgeom' <https://github.com/postgis/postgis/tree/svn-trunk/liblwgeom>, the light-weight geometry library used by 'PostGIS' <http://postgis.net/>.
Author: Edzer Pebesma [aut, cre] (<https://orcid.org/0000-0001-8049-7069>),
Colin Rundel [ctb],
liblwgeom developers [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between lwgeom versions 0.1-3 dated 2018-01-21 and 0.1-4 dated 2018-01-28
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- tests/testthat/test_lwgeom.R | 1 + 3 files changed, 7 insertions(+), 6 deletions(-)
Title: L1 Regularization Path for Generalized Linear Models and Cox
Proportional Hazards Model
Description: A path-following algorithm for L1 regularized generalized linear models and Cox proportional hazards model.
Author: Mee Young Park, Trevor Hastie
Maintainer: Mee Young Park <meeyoung@google.com>
Diff between glmpath versions 0.97 dated 2013-02-06 and 0.98 dated 2018-01-28
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- NAMESPACE | 13 +++++++++++++ man/cv.coxpath.Rd | 2 +- man/plot.coxpath.Rd | 12 ++++++------ man/plot.glmpath.Rd | 12 ++++++------ src/glmpath_init.c |only 7 files changed, 38 insertions(+), 24 deletions(-)
Title: Diffs for R Objects
Description: Generate a colorized diff of two R objects for an intuitive
visualization of their differences.
Author: Brodie Gaslam [aut, cre],
Michael B. Allen [ctb, cph] (Original C implementation of Myers Diff
Algorithm)
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between diffobj versions 0.1.8 dated 2017-12-10 and 0.1.9 dated 2018-01-28
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/guides.R | 3 +-- build/vignette.rds |binary tests/testthat/testthat.diffPrint.R | 11 ++++++++--- tests/testthat/testthat.guide.R | 29 +++++++++++++++++------------ 7 files changed, 40 insertions(+), 27 deletions(-)
Title: A Compression Format Optimized for the Web
Description: A lossless compressed data format that uses a combination of the
LZ77 algorithm and Huffman coding. Brotli is similar in speed to deflate (gzip)
but offers more dense compression.
Author: Jeroen Ooms [aut, cre],
Google, Inc [aut, cph] (Brotli C++ library)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between brotli versions 1.0 dated 2017-03-18 and 1.1 dated 2018-01-28
brotli-1.0/brotli/src/common/port.h |only brotli-1.0/brotli/src/common/types.h |only brotli-1.0/brotli/src/dec/decode.h |only brotli-1.0/brotli/src/dec/port.h |only brotli-1.0/brotli/src/enc/compressor.h |only brotli-1.0/brotli/src/enc/encode.h |only brotli-1.0/brotli/src/enc/encode_parallel.h |only brotli-1.0/brotli/src/enc/port.h |only brotli-1.0/brotli/src/enc/streams.h |only brotli-1.0/brotli/src/tools/bro.c |only brotli-1.0/brotli/src/tools/version.h |only brotli-1.1/brotli/DESCRIPTION | 14 brotli-1.1/brotli/MD5 | 167 brotli-1.1/brotli/NEWS | 5 brotli-1.1/brotli/build/vignette.rds |binary brotli-1.1/brotli/inst/WORDLIST |only brotli-1.1/brotli/inst/doc/benchmarks.R | 7 brotli-1.1/brotli/inst/doc/benchmarks.Rmd | 15 brotli-1.1/brotli/inst/doc/benchmarks.html | 234 brotli-1.1/brotli/src/Makevars | 13 brotli-1.1/brotli/src/common/constants.h | 12 brotli-1.1/brotli/src/common/dictionary.bin |only brotli-1.1/brotli/src/common/dictionary.c |15341 ++++------- brotli-1.1/brotli/src/common/dictionary.h | 47 brotli-1.1/brotli/src/common/platform.h |only brotli-1.1/brotli/src/common/version.h |only brotli-1.1/brotli/src/dec/bit_reader.c | 6 brotli-1.1/brotli/src/dec/bit_reader.h | 129 brotli-1.1/brotli/src/dec/context.h | 2 brotli-1.1/brotli/src/dec/decode.c | 761 brotli-1.1/brotli/src/dec/huffman.c | 33 brotli-1.1/brotli/src/dec/huffman.h | 4 brotli-1.1/brotli/src/dec/prefix.h | 2 brotli-1.1/brotli/src/dec/state.c | 53 brotli-1.1/brotli/src/dec/state.h | 45 brotli-1.1/brotli/src/dec/transform.h | 8 brotli-1.1/brotli/src/enc/backward_references.c | 808 brotli-1.1/brotli/src/enc/backward_references.h | 78 brotli-1.1/brotli/src/enc/backward_references_hq.c |only brotli-1.1/brotli/src/enc/backward_references_hq.h |only brotli-1.1/brotli/src/enc/backward_references_inc.h | 69 brotli-1.1/brotli/src/enc/bit_cost.c | 4 brotli-1.1/brotli/src/enc/bit_cost.h | 4 brotli-1.1/brotli/src/enc/block_splitter.c | 9 brotli-1.1/brotli/src/enc/block_splitter.h | 4 brotli-1.1/brotli/src/enc/block_splitter_inc.h | 33 brotli-1.1/brotli/src/enc/brotli_bit_stream.c | 64 brotli-1.1/brotli/src/enc/brotli_bit_stream.h | 8 brotli-1.1/brotli/src/enc/cluster.c | 4 brotli-1.1/brotli/src/enc/cluster.h | 4 brotli-1.1/brotli/src/enc/cluster_inc.h | 2 brotli-1.1/brotli/src/enc/command.h | 51 brotli-1.1/brotli/src/enc/compress_fragment.c | 175 brotli-1.1/brotli/src/enc/compress_fragment.h | 9 brotli-1.1/brotli/src/enc/compress_fragment_two_pass.c | 180 brotli-1.1/brotli/src/enc/compress_fragment_two_pass.h | 9 brotli-1.1/brotli/src/enc/context.h | 6 brotli-1.1/brotli/src/enc/dictionary_hash.c |only brotli-1.1/brotli/src/enc/dictionary_hash.h | 4101 --- brotli-1.1/brotli/src/enc/encode.c | 720 brotli-1.1/brotli/src/enc/entropy_encode.c | 24 brotli-1.1/brotli/src/enc/entropy_encode.h | 10 brotli-1.1/brotli/src/enc/entropy_encode_static.h | 8 brotli-1.1/brotli/src/enc/fast_log.h | 6 brotli-1.1/brotli/src/enc/find_match_length.h | 22 brotli-1.1/brotli/src/enc/hash.h | 679 brotli-1.1/brotli/src/enc/hash_forgetful_chain_inc.h | 142 brotli-1.1/brotli/src/enc/hash_longest_match64_inc.h |only brotli-1.1/brotli/src/enc/hash_longest_match_inc.h | 225 brotli-1.1/brotli/src/enc/hash_longest_match_quickly_inc.h | 158 brotli-1.1/brotli/src/enc/hash_to_binary_tree_inc.h |only brotli-1.1/brotli/src/enc/histogram.c | 6 brotli-1.1/brotli/src/enc/histogram.h | 4 brotli-1.1/brotli/src/enc/literal_cost.c | 13 brotli-1.1/brotli/src/enc/literal_cost.h | 6 brotli-1.1/brotli/src/enc/memory.c | 9 brotli-1.1/brotli/src/enc/memory.h | 31 brotli-1.1/brotli/src/enc/metablock.c | 273 brotli-1.1/brotli/src/enc/metablock.h | 16 brotli-1.1/brotli/src/enc/metablock_inc.h | 2 brotli-1.1/brotli/src/enc/params.h |only brotli-1.1/brotli/src/enc/prefix.h | 6 brotli-1.1/brotli/src/enc/quality.h | 63 brotli-1.1/brotli/src/enc/ringbuffer.h | 14 brotli-1.1/brotli/src/enc/static_dict.c | 52 brotli-1.1/brotli/src/enc/static_dict.h | 6 brotli-1.1/brotli/src/enc/static_dict_lut.h |17033 ++++--------- brotli-1.1/brotli/src/enc/utf8_util.c | 2 brotli-1.1/brotli/src/enc/utf8_util.h | 6 brotli-1.1/brotli/src/enc/write_bits.h | 25 brotli-1.1/brotli/src/include |only brotli-1.1/brotli/src/tools/brotli.c |only brotli-1.1/brotli/src/wrapper.c | 41 brotli-1.1/brotli/tests |only brotli-1.1/brotli/vignettes/benchmarks.Rmd | 15 95 files changed, 14311 insertions(+), 27826 deletions(-)
Title: An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Description: Provides the 'ImageJ' 'Auto Threshold' plugin functionality to R users.
See <http://imagej.net/Auto_Threshold> and Landini et al. (2017) <DOI:10.1111/jmi.12474>.
Author: Rory Nolan [aut, cre, trl],
Luis Alvarez [ctb],
Sergi Padilla-Parra [ctb, ths],
Gabriel Landini [ctb, cph]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between autothresholdr versions 1.1.0 dated 2018-01-23 and 1.1.1 dated 2018-01-28
DESCRIPTION | 6 MD5 | 8 inst/doc/autothresholdr.html | 362 +++++++++++++++++++++++------- inst/include/autothresholdr_RcppExports.h | 8 src/AutoThreshold.cpp | 2 5 files changed, 298 insertions(+), 88 deletions(-)
More information about autothresholdr at CRAN
Permanent link
Title: Analysis of Animal Movements
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>
Diff between adehabitatLT versions 0.3.22 dated 2017-11-28 and 0.3.23 dated 2018-01-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/gdltraj.r | 2 +- inst/doc/adehabitatLT.pdf |binary man/indmove.Rd | 3 +-- 5 files changed, 10 insertions(+), 11 deletions(-)
Title: Analysis of Habitat Selection by Animals
Description: A collection of tools for the analysis of habitat selection by animals.
Author: Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe
Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>
Diff between adehabitat versions 1.8.19 dated 2017-11-28 and 1.8.20 dated 2018-01-28
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/gdltraj.r | 2 +- man/indmove.Rd | 3 ++- 4 files changed, 10 insertions(+), 9 deletions(-)
Title: Linking Geographic Information Systems, Remote Sensing and Other
Command Line Tools
Description: Functions to simplify the linking of open source GIS and remote sensing related command line interfaces.
Author: Tim Appelhans [aut, aut],
Chris Reudenbach [cre]
Maintainer: Chris Reudenbach <reudenbach@uni-marburg.de>
Diff between link2GI versions 0.1-0 dated 2017-01-22 and 0.2-0 dated 2018-01-28
link2GI-0.1-0/link2GI/man/getGrassParams4W.Rd |only link2GI-0.1-0/link2GI/man/getGrassParams4X.Rd |only link2GI-0.1-0/link2GI/man/setGrassEnv4W.Rd |only link2GI-0.1-0/link2GI/man/setOTBEnv.Rd |only link2GI-0.2-0/link2GI/DESCRIPTION | 26 - link2GI-0.2-0/link2GI/MD5 | 63 +-- link2GI-0.2-0/link2GI/NAMESPACE | 11 link2GI-0.2-0/link2GI/R/initControls.R | 492 ++++++++++++------------- link2GI-0.2-0/link2GI/R/initProj.R | 25 + link2GI-0.2-0/link2GI/R/link2GI-package.R | 3 link2GI-0.2-0/link2GI/R/linkGRASS.R | 257 +++++++++---- link2GI-0.2-0/link2GI/R/linkOTB.R | 50 +- link2GI-0.2-0/link2GI/R/linkSAGA.R | 73 +-- link2GI-0.2-0/link2GI/R/r_gvec.R |only link2GI-0.2-0/link2GI/R/w_gvec.R |only link2GI-0.2-0/link2GI/README.md | 2 link2GI-0.2-0/link2GI/build |only link2GI-0.2-0/link2GI/inst |only link2GI-0.2-0/link2GI/man/add2Path.Rd | 1 link2GI-0.2-0/link2GI/man/checkPCDomain.Rd | 1 link2GI-0.2-0/link2GI/man/getSpatialClass.Rd | 3 link2GI-0.2-0/link2GI/man/getparams_GRASS4W.Rd |only link2GI-0.2-0/link2GI/man/getparams_GRASS4X.Rd |only link2GI-0.2-0/link2GI/man/initProj.Rd | 7 link2GI-0.2-0/link2GI/man/link2GI.Rd | 3 link2GI-0.2-0/link2GI/man/linkGRASS7.Rd | 125 ++++-- link2GI-0.2-0/link2GI/man/linkOTB.Rd | 17 link2GI-0.2-0/link2GI/man/linkSAGA.Rd | 19 link2GI-0.2-0/link2GI/man/linkgdalUtils.Rd | 1 link2GI-0.2-0/link2GI/man/makGlobalVar.Rd | 1 link2GI-0.2-0/link2GI/man/r_gvec.Rd |only link2GI-0.2-0/link2GI/man/searchGRASSW.Rd | 3 link2GI-0.2-0/link2GI/man/searchGRASSX.Rd | 3 link2GI-0.2-0/link2GI/man/searchOTBW.Rd | 1 link2GI-0.2-0/link2GI/man/searchSAGAW.Rd | 5 link2GI-0.2-0/link2GI/man/setenv_GRASS4W.Rd |only link2GI-0.2-0/link2GI/man/setenv_OTB.Rd |only link2GI-0.2-0/link2GI/man/w_gvec.Rd |only link2GI-0.2-0/link2GI/vignettes |only 39 files changed, 694 insertions(+), 498 deletions(-)